Query 037337
Match_columns 247
No_of_seqs 232 out of 1987
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 19:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.3E-25 8E-30 201.1 15.4 143 97-246 131-289 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-21 5E-26 190.3 14.9 152 88-246 118-281 (1249)
3 1vt4_I APAF-1 related killer D 99.8 8.7E-22 3E-26 184.5 7.6 135 95-236 129-279 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.8 2.2E-20 7.5E-25 169.9 13.5 141 89-237 119-272 (591)
5 1w5s_A Origin recognition comp 99.5 4.7E-13 1.6E-17 116.0 12.0 143 92-234 20-191 (412)
6 2qen_A Walker-type ATPase; unk 99.4 1.6E-13 5.3E-18 116.2 8.5 138 87-234 5-176 (350)
7 2qby_A CDC6 homolog 1, cell di 99.4 1.4E-12 4.7E-17 111.8 10.7 144 92-235 18-176 (386)
8 2v1u_A Cell division control p 99.4 3.6E-12 1.2E-16 109.3 12.7 143 92-234 17-179 (387)
9 2qby_B CDC6 homolog 3, cell di 99.4 2.4E-12 8.4E-17 110.5 11.1 139 93-233 19-175 (384)
10 1fnn_A CDC6P, cell division co 99.4 1.2E-11 4E-16 106.3 14.4 143 92-235 15-172 (389)
11 2fna_A Conserved hypothetical 99.4 2.2E-12 7.4E-17 109.4 9.6 138 88-234 7-182 (357)
12 2chg_A Replication factor C sm 99.3 2.3E-11 7.9E-16 95.9 11.1 128 91-233 14-143 (226)
13 1njg_A DNA polymerase III subu 99.2 1.5E-10 5.2E-15 92.3 10.5 138 89-233 18-167 (250)
14 3te6_A Regulatory protein SIR3 99.2 3.5E-10 1.2E-14 94.6 12.8 114 94-207 20-145 (318)
15 1sxj_B Activator 1 37 kDa subu 99.1 1.2E-10 4E-15 97.5 7.7 129 90-232 17-147 (323)
16 1jbk_A CLPB protein; beta barr 99.1 5.4E-10 1.9E-14 85.9 9.9 51 91-141 19-69 (195)
17 1iqp_A RFCS; clamp loader, ext 99.0 5E-10 1.7E-14 93.8 5.5 127 90-233 21-151 (327)
18 2chq_A Replication factor C sm 98.9 2.7E-09 9.4E-14 88.9 8.9 126 91-233 14-143 (319)
19 2p65_A Hypothetical protein PF 98.9 3.9E-09 1.3E-13 80.8 7.7 51 91-141 19-69 (187)
20 3h4m_A Proteasome-activating n 98.8 1.3E-08 4.4E-13 83.8 8.3 96 91-206 14-122 (285)
21 1jr3_A DNA polymerase III subu 98.8 2.5E-08 8.5E-13 85.0 9.3 52 91-142 13-65 (373)
22 3u61_B DNA polymerase accessor 98.7 5.9E-08 2E-12 81.4 9.9 123 89-233 21-147 (324)
23 1sxj_D Activator 1 41 kDa subu 98.7 2.2E-08 7.7E-13 84.7 7.4 137 90-232 33-173 (353)
24 3n70_A Transport activator; si 98.7 1.1E-08 3.6E-13 76.0 3.9 110 95-231 2-115 (145)
25 1hqc_A RUVB; extended AAA-ATPa 98.7 4.1E-08 1.4E-12 82.2 7.5 63 91-158 9-76 (324)
26 3syl_A Protein CBBX; photosynt 98.7 2.7E-08 9.2E-13 82.8 6.2 48 95-142 32-94 (309)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3E-07 1E-11 74.5 11.9 94 93-206 5-110 (262)
28 3eie_A Vacuolar protein sortin 98.6 1.2E-07 3.9E-12 79.7 9.3 96 91-206 15-122 (322)
29 1d2n_A N-ethylmaleimide-sensit 98.6 2.2E-07 7.6E-12 75.9 9.9 47 94-140 33-89 (272)
30 1xwi_A SKD1 protein; VPS4B, AA 98.6 1.1E-06 3.6E-11 73.8 14.2 96 92-206 10-117 (322)
31 3pvs_A Replication-associated 98.6 3E-07 1E-11 80.6 11.0 52 90-141 22-76 (447)
32 3vfd_A Spastin; ATPase, microt 98.6 3.3E-07 1.1E-11 78.9 11.0 96 91-206 112-219 (389)
33 3d8b_A Fidgetin-like protein 1 98.6 2.9E-07 1E-11 78.4 10.2 94 92-205 82-187 (357)
34 3pxg_A Negative regulator of g 98.5 4.1E-07 1.4E-11 80.3 10.6 50 92-141 178-227 (468)
35 3ec2_A DNA replication protein 98.5 9.4E-08 3.2E-12 73.2 5.6 117 99-232 19-143 (180)
36 1sxj_E Activator 1 40 kDa subu 98.5 2.9E-07 9.9E-12 77.9 9.1 50 90-139 10-60 (354)
37 1sxj_C Activator 1 40 kDa subu 98.5 2.8E-07 9.5E-12 77.9 8.3 128 90-232 21-150 (340)
38 1sxj_A Activator 1 95 kDa subu 98.5 2.3E-07 7.7E-12 82.9 8.0 66 90-160 35-117 (516)
39 2w58_A DNAI, primosome compone 98.5 1.4E-07 4.7E-12 73.6 5.7 121 93-231 24-158 (202)
40 1qvr_A CLPB protein; coiled co 98.5 3.5E-07 1.2E-11 86.4 9.4 102 92-206 168-275 (854)
41 1r6b_X CLPA protein; AAA+, N-t 98.5 2.1E-06 7.3E-11 80.1 14.5 102 92-206 184-290 (758)
42 3b9p_A CG5977-PA, isoform A; A 98.5 1.3E-06 4.5E-11 72.1 11.5 95 92-206 19-125 (297)
43 2zan_A Vacuolar protein sortin 98.5 1.4E-06 4.9E-11 76.3 11.8 48 92-139 132-191 (444)
44 2z4s_A Chromosomal replication 98.4 6.4E-07 2.2E-11 78.4 8.7 124 93-231 104-236 (440)
45 3uk6_A RUVB-like 2; hexameric 98.4 7.1E-06 2.4E-10 69.7 14.4 50 93-142 43-97 (368)
46 2qp9_X Vacuolar protein sortin 98.4 2.5E-06 8.4E-11 72.6 11.4 95 92-206 49-155 (355)
47 3co5_A Putative two-component 98.4 8.6E-08 2.9E-12 70.8 1.8 46 94-139 4-51 (143)
48 1l8q_A Chromosomal replication 98.4 6.6E-07 2.3E-11 75.0 7.3 113 102-232 22-141 (324)
49 3pfi_A Holliday junction ATP-d 98.4 1.6E-06 5.5E-11 73.0 9.6 50 91-140 26-80 (338)
50 2gno_A DNA polymerase III, gam 98.3 2.4E-06 8.3E-11 71.1 9.9 117 98-232 1-122 (305)
51 3pxi_A Negative regulator of g 98.3 2.4E-06 8.4E-11 79.7 10.6 49 92-140 178-226 (758)
52 1a5t_A Delta prime, HOLB; zinc 98.3 5E-06 1.7E-10 70.1 10.9 42 100-141 8-50 (334)
53 4fcw_A Chaperone protein CLPB; 98.3 3.8E-07 1.3E-11 75.7 4.0 105 95-206 18-131 (311)
54 4b4t_L 26S protease subunit RP 98.3 7.6E-06 2.6E-10 71.2 11.4 94 93-206 180-286 (437)
55 3cf0_A Transitional endoplasmi 98.3 4.6E-06 1.6E-10 69.2 9.7 94 92-205 13-119 (301)
56 4b4t_J 26S protease regulatory 98.3 5.8E-06 2E-10 71.0 10.4 94 93-206 147-253 (405)
57 2bjv_A PSP operon transcriptio 98.2 6.8E-07 2.3E-11 72.7 3.6 61 94-156 6-68 (265)
58 4b4t_M 26S protease regulatory 98.2 5.9E-06 2E-10 71.8 9.4 94 92-205 179-285 (434)
59 2r62_A Cell division protease 98.2 8.4E-07 2.9E-11 72.2 3.8 50 92-141 9-70 (268)
60 4b4t_K 26S protease regulatory 98.2 1.1E-05 3.9E-10 69.9 10.4 93 93-205 171-276 (428)
61 1lv7_A FTSH; alpha/beta domain 98.2 1E-05 3.4E-10 65.4 9.5 50 91-140 9-70 (257)
62 3hu3_A Transitional endoplasmi 98.2 1.3E-05 4.6E-10 70.9 10.9 48 93-140 203-263 (489)
63 4b4t_H 26S protease regulatory 98.1 1.6E-05 5.4E-10 69.3 10.7 94 93-206 208-314 (467)
64 2ce7_A Cell division protein F 98.1 8.9E-06 3E-10 71.7 9.2 94 92-205 14-119 (476)
65 4b4t_I 26S protease regulatory 98.1 1.5E-05 5E-10 68.9 10.3 94 93-206 181-287 (437)
66 3bos_A Putative DNA replicatio 98.1 5.7E-06 1.9E-10 65.6 7.2 62 92-155 26-90 (242)
67 2kjq_A DNAA-related protein; s 98.1 5.6E-06 1.9E-10 61.5 6.6 40 114-155 35-74 (149)
68 1ojl_A Transcriptional regulat 98.1 1.8E-06 6.1E-11 71.9 3.9 61 94-156 2-64 (304)
69 1ofh_A ATP-dependent HSL prote 98.1 3.9E-06 1.3E-10 69.4 6.0 57 94-155 15-85 (310)
70 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.7E-05 6E-10 62.5 7.7 113 115-232 23-168 (235)
71 1n0w_A DNA repair protein RAD5 97.9 8.3E-05 2.8E-09 59.1 11.0 91 115-206 24-131 (243)
72 3io5_A Recombination and repai 97.9 9.2E-05 3.2E-09 61.5 11.2 85 117-206 30-123 (333)
73 3hr8_A Protein RECA; alpha and 97.9 6.2E-05 2.1E-09 63.8 10.4 85 115-206 61-151 (356)
74 3t15_A Ribulose bisphosphate c 97.9 1.9E-05 6.6E-10 65.2 7.1 29 114-142 35-63 (293)
75 2c9o_A RUVB-like 1; hexameric 97.9 3.4E-05 1.2E-09 67.7 8.9 49 93-141 36-89 (456)
76 2cvh_A DNA repair and recombin 97.9 6.7E-05 2.3E-09 58.7 9.7 85 115-206 20-117 (220)
77 3pxi_A Negative regulator of g 97.9 6.3E-06 2.1E-10 76.9 3.8 60 94-155 491-559 (758)
78 2qgz_A Helicase loader, putati 97.9 2.7E-05 9.2E-10 64.8 6.8 53 99-153 133-189 (308)
79 2vhj_A Ntpase P4, P4; non- hyd 97.8 3.8E-05 1.3E-09 64.0 7.5 69 116-206 124-194 (331)
80 3cf2_A TER ATPase, transitiona 97.8 3E-05 1E-09 72.2 7.6 94 93-206 203-309 (806)
81 2zr9_A Protein RECA, recombina 97.8 0.00011 3.7E-09 62.2 10.3 85 115-206 61-151 (349)
82 1xp8_A RECA protein, recombina 97.8 0.00013 4.4E-09 62.1 10.7 85 115-206 74-164 (366)
83 1v5w_A DMC1, meiotic recombina 97.8 0.00012 4.2E-09 61.8 10.3 91 115-206 122-231 (343)
84 1qvr_A CLPB protein; coiled co 97.8 1E-05 3.5E-10 76.4 3.6 61 94-156 558-627 (854)
85 3m6a_A ATP-dependent protease 97.8 0.00019 6.5E-09 64.4 11.6 48 94-141 81-134 (543)
86 2b8t_A Thymidine kinase; deoxy 97.7 1.7E-05 5.9E-10 62.8 3.5 112 115-234 12-128 (223)
87 1u94_A RECA protein, recombina 97.7 0.00017 5.8E-09 61.2 9.7 85 115-206 63-153 (356)
88 2i1q_A DNA repair and recombin 97.7 0.00014 4.9E-09 60.7 9.1 90 115-205 98-215 (322)
89 2x8a_A Nuclear valosin-contain 97.7 0.00012 4.2E-09 59.7 8.4 48 93-140 9-69 (274)
90 1r6b_X CLPA protein; AAA+, N-t 97.7 3.2E-05 1.1E-09 72.1 5.6 103 94-206 458-569 (758)
91 2ehv_A Hypothetical protein PH 97.7 2.7E-05 9.2E-10 62.2 4.3 38 115-154 30-68 (251)
92 2z43_A DNA repair and recombin 97.7 0.00028 9.6E-09 59.0 10.7 91 115-206 107-215 (324)
93 3bh0_A DNAB-like replicative h 97.7 0.00064 2.2E-08 56.6 12.4 60 102-167 57-116 (315)
94 3lw7_A Adenylate kinase relate 97.7 0.0004 1.4E-08 51.9 10.1 20 116-135 2-21 (179)
95 2r44_A Uncharacterized protein 97.6 9.4E-05 3.2E-09 61.9 6.7 61 94-161 27-87 (331)
96 3lda_A DNA repair protein RAD5 97.6 0.00019 6.4E-09 61.8 8.5 90 115-205 178-284 (400)
97 1ypw_A Transitional endoplasmi 97.6 5E-05 1.7E-09 71.3 5.2 48 93-140 203-263 (806)
98 4a74_A DNA repair and recombin 97.6 0.00044 1.5E-08 54.3 9.4 91 115-206 25-137 (231)
99 1in4_A RUVB, holliday junction 97.5 6.6E-05 2.3E-09 63.1 4.7 51 91-141 22-77 (334)
100 2dr3_A UPF0273 protein PH0284; 97.5 0.00058 2E-08 54.2 9.6 39 115-155 23-61 (247)
101 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00045 1.5E-08 61.2 9.6 50 91-140 28-89 (499)
102 2px0_A Flagellar biosynthesis 97.4 0.00087 3E-08 55.3 10.1 41 114-155 104-144 (296)
103 1g8p_A Magnesium-chelatase 38 97.4 9E-05 3.1E-09 62.3 3.7 49 92-140 22-70 (350)
104 1rz3_A Hypothetical protein rb 97.4 0.0002 7E-09 55.5 5.5 43 99-141 3-48 (201)
105 1g5t_A COB(I)alamin adenosyltr 97.4 0.00084 2.9E-08 51.8 8.4 116 115-232 28-163 (196)
106 2orw_A Thymidine kinase; TMTK, 97.4 1.2E-05 4.1E-10 61.9 -2.1 110 116-233 4-114 (184)
107 2r6a_A DNAB helicase, replicat 97.3 0.012 4E-07 51.5 16.6 60 102-166 192-251 (454)
108 3dm5_A SRP54, signal recogniti 97.3 0.0022 7.6E-08 55.7 11.7 29 114-142 99-127 (443)
109 1pzn_A RAD51, DNA repair and r 97.3 0.00059 2E-08 57.7 7.7 91 115-206 131-243 (349)
110 4a1f_A DNAB helicase, replicat 97.3 0.0023 8E-08 53.7 11.2 60 101-166 34-93 (338)
111 3fwy_A Light-independent proto 97.3 0.00034 1.2E-08 58.3 6.0 42 113-156 46-87 (314)
112 3kl4_A SRP54, signal recogniti 97.3 0.0027 9.3E-08 55.1 11.8 39 114-154 96-134 (433)
113 3c8u_A Fructokinase; YP_612366 97.3 0.00032 1.1E-08 54.7 5.4 41 101-141 6-48 (208)
114 3cmu_A Protein RECA, recombina 97.3 0.00091 3.1E-08 67.8 9.7 84 114-204 1426-1515(2050)
115 3jvv_A Twitching mobility prot 97.3 6.2E-05 2.1E-09 63.9 1.3 112 115-236 123-235 (356)
116 1qhx_A CPT, protein (chloramph 97.3 0.00017 6E-09 54.4 3.6 25 116-140 4-28 (178)
117 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00013 4.5E-09 64.6 3.2 46 94-141 22-67 (500)
118 3cf2_A TER ATPase, transitiona 97.3 0.00026 9E-09 66.0 5.3 94 93-206 476-582 (806)
119 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.2E-09 53.5 3.7 25 116-140 2-26 (173)
120 1vma_A Cell division protein F 97.2 0.0023 7.7E-08 53.1 10.0 89 114-205 103-197 (306)
121 1j8m_F SRP54, signal recogniti 97.2 0.0047 1.6E-07 50.9 11.9 39 115-155 98-136 (297)
122 2xxa_A Signal recognition part 97.2 0.0032 1.1E-07 54.7 11.1 41 114-155 99-139 (433)
123 1sky_E F1-ATPase, F1-ATP synth 97.2 0.001 3.5E-08 58.2 7.8 89 116-205 152-256 (473)
124 3hws_A ATP-dependent CLP prote 97.2 0.00051 1.7E-08 58.2 5.8 46 95-140 16-76 (363)
125 1ixz_A ATP-dependent metallopr 97.1 0.0009 3.1E-08 53.6 6.6 49 92-140 14-74 (254)
126 3trf_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 53.3 3.8 26 115-140 5-30 (185)
127 3cmw_A Protein RECA, recombina 97.1 0.0014 4.9E-08 65.5 9.2 85 115-206 732-822 (1706)
128 3bgw_A DNAB-like replicative h 97.1 0.0029 1E-07 55.2 10.3 51 102-156 186-236 (444)
129 3vaa_A Shikimate kinase, SK; s 97.1 0.00035 1.2E-08 54.0 4.0 26 115-140 25-50 (199)
130 1um8_A ATP-dependent CLP prote 97.1 0.00064 2.2E-08 57.9 5.9 26 115-140 72-97 (376)
131 2q6t_A DNAB replication FORK h 97.1 0.004 1.4E-07 54.3 11.1 61 102-167 189-249 (444)
132 2j37_W Signal recognition part 97.1 0.0089 3E-07 52.9 13.2 29 114-142 100-128 (504)
133 1ly1_A Polynucleotide kinase; 97.1 0.00032 1.1E-08 52.9 3.6 22 116-137 3-24 (181)
134 3uie_A Adenylyl-sulfate kinase 97.1 0.0004 1.4E-08 53.7 4.1 29 112-140 22-50 (200)
135 4eun_A Thermoresistant glucoki 97.1 0.0004 1.4E-08 53.7 4.0 27 113-139 27-53 (200)
136 2rhm_A Putative kinase; P-loop 97.1 0.00041 1.4E-08 52.9 4.0 26 115-140 5-30 (193)
137 1nks_A Adenylate kinase; therm 97.1 0.00036 1.2E-08 53.2 3.7 27 116-142 2-28 (194)
138 2yvu_A Probable adenylyl-sulfa 97.1 0.00046 1.6E-08 52.6 4.2 29 114-142 12-40 (186)
139 1kag_A SKI, shikimate kinase I 97.1 0.00031 1.1E-08 52.7 3.2 25 116-140 5-29 (173)
140 1ls1_A Signal recognition part 97.1 0.0038 1.3E-07 51.4 9.9 87 114-203 97-189 (295)
141 1kht_A Adenylate kinase; phosp 97.0 0.00041 1.4E-08 52.8 3.8 26 116-141 4-29 (192)
142 2hf9_A Probable hydrogenase ni 97.0 0.00062 2.1E-08 53.4 4.8 41 101-141 24-64 (226)
143 3t61_A Gluconokinase; PSI-biol 97.0 0.00039 1.3E-08 53.8 3.4 26 115-140 18-43 (202)
144 3iij_A Coilin-interacting nucl 97.0 0.00044 1.5E-08 52.4 3.6 26 115-140 11-36 (180)
145 3end_A Light-independent proto 97.0 0.001 3.5E-08 55.0 6.0 44 112-157 38-81 (307)
146 1q57_A DNA primase/helicase; d 97.0 0.0048 1.7E-07 54.6 10.7 49 115-166 242-290 (503)
147 1kgd_A CASK, peripheral plasma 97.0 0.00045 1.5E-08 52.5 3.5 25 116-140 6-30 (180)
148 1zp6_A Hypothetical protein AT 97.0 0.00048 1.6E-08 52.6 3.6 24 115-138 9-32 (191)
149 1tev_A UMP-CMP kinase; ploop, 97.0 0.00053 1.8E-08 52.3 3.8 26 115-140 3-28 (196)
150 3cmu_A Protein RECA, recombina 97.0 0.0029 9.8E-08 64.2 9.9 85 115-206 383-473 (2050)
151 2ffh_A Protein (FFH); SRP54, s 97.0 0.0058 2E-07 52.9 10.6 39 114-154 97-135 (425)
152 2c95_A Adenylate kinase 1; tra 97.0 0.00057 1.9E-08 52.3 3.9 26 115-140 9-34 (196)
153 3ice_A Transcription terminati 97.0 0.00082 2.8E-08 57.3 5.1 88 115-206 174-273 (422)
154 1iy2_A ATP-dependent metallopr 97.0 0.0015 5.2E-08 53.1 6.6 50 91-140 37-98 (278)
155 2z0h_A DTMP kinase, thymidylat 97.0 0.0019 6.4E-08 49.4 6.8 26 117-142 2-27 (197)
156 2zts_A Putative uncharacterize 96.9 0.0027 9.2E-08 50.3 7.9 48 115-165 30-77 (251)
157 1via_A Shikimate kinase; struc 96.9 0.00051 1.7E-08 51.8 3.3 25 116-140 5-29 (175)
158 2jaq_A Deoxyguanosine kinase; 96.9 0.0006 2E-08 52.5 3.8 25 117-141 2-26 (205)
159 2qor_A Guanylate kinase; phosp 96.9 0.0005 1.7E-08 53.3 3.3 26 115-140 12-37 (204)
160 2ze6_A Isopentenyl transferase 96.9 0.00059 2E-08 55.0 3.7 25 116-140 2-26 (253)
161 1tue_A Replication protein E1; 96.9 0.0008 2.8E-08 52.3 4.3 39 103-141 45-84 (212)
162 2plr_A DTMP kinase, probable t 96.9 0.00069 2.3E-08 52.5 4.0 27 116-142 5-31 (213)
163 1y63_A LMAJ004144AAA protein; 96.9 0.00078 2.7E-08 51.4 4.2 24 115-138 10-33 (184)
164 2bwj_A Adenylate kinase 5; pho 96.9 0.00065 2.2E-08 52.1 3.7 26 115-140 12-37 (199)
165 1ukz_A Uridylate kinase; trans 96.9 0.00073 2.5E-08 52.2 4.0 26 114-139 14-39 (203)
166 1qf9_A UMP/CMP kinase, protein 96.9 0.0008 2.7E-08 51.2 4.2 26 115-140 6-31 (194)
167 3tau_A Guanylate kinase, GMP k 96.9 0.00061 2.1E-08 53.1 3.6 27 114-140 7-33 (208)
168 1zuh_A Shikimate kinase; alpha 96.9 0.0007 2.4E-08 50.6 3.8 27 115-141 7-33 (168)
169 1ex7_A Guanylate kinase; subst 96.9 0.00056 1.9E-08 52.5 3.2 25 116-140 2-26 (186)
170 1knq_A Gluconate kinase; ALFA/ 96.9 0.0007 2.4E-08 50.9 3.8 25 115-139 8-32 (175)
171 2iyv_A Shikimate kinase, SK; t 96.9 0.00055 1.9E-08 52.0 3.2 25 116-140 3-27 (184)
172 3cm0_A Adenylate kinase; ATP-b 96.9 0.0007 2.4E-08 51.4 3.7 25 116-140 5-29 (186)
173 3k1j_A LON protease, ATP-depen 96.9 0.0012 4.1E-08 59.9 5.8 50 91-142 38-87 (604)
174 1gvn_B Zeta; postsegregational 96.9 0.0012 4E-08 54.3 5.2 26 114-139 32-57 (287)
175 2cdn_A Adenylate kinase; phosp 96.9 0.00088 3E-08 51.7 4.2 26 115-140 20-45 (201)
176 3e70_C DPA, signal recognition 96.9 0.017 6E-07 48.2 12.4 30 113-142 127-156 (328)
177 1aky_A Adenylate kinase; ATP:A 96.9 0.0008 2.7E-08 52.7 4.0 26 115-140 4-29 (220)
178 2wsm_A Hydrogenase expression/ 96.9 0.00083 2.8E-08 52.4 4.1 41 100-140 15-55 (221)
179 1odf_A YGR205W, hypothetical 3 96.9 0.0016 5.4E-08 53.6 5.9 29 113-141 29-57 (290)
180 2ck3_D ATP synthase subunit be 96.9 0.0085 2.9E-07 52.4 10.7 90 115-205 153-264 (482)
181 1e6c_A Shikimate kinase; phosp 96.9 0.00066 2.2E-08 50.9 3.3 25 116-140 3-27 (173)
182 2vli_A Antibiotic resistance p 96.8 0.00052 1.8E-08 52.0 2.7 26 115-140 5-30 (183)
183 1fx0_B ATP synthase beta chain 96.8 0.005 1.7E-07 54.0 9.1 90 115-205 165-277 (498)
184 3hjn_A DTMP kinase, thymidylat 96.8 0.004 1.4E-07 48.1 7.7 84 117-204 2-91 (197)
185 3tr0_A Guanylate kinase, GMP k 96.8 0.00079 2.7E-08 51.9 3.7 25 115-139 7-31 (205)
186 1uj2_A Uridine-cytidine kinase 96.8 0.00084 2.9E-08 53.9 3.9 28 113-140 20-47 (252)
187 1cke_A CK, MSSA, protein (cyti 96.8 0.00081 2.8E-08 52.8 3.7 24 116-139 6-29 (227)
188 2wwf_A Thymidilate kinase, put 96.8 0.00089 3E-08 51.9 3.9 32 115-147 10-41 (212)
189 3umf_A Adenylate kinase; rossm 96.8 0.00094 3.2E-08 52.6 4.0 27 114-140 28-54 (217)
190 3a00_A Guanylate kinase, GMP k 96.8 0.00068 2.3E-08 51.8 3.1 25 116-140 2-26 (186)
191 2j41_A Guanylate kinase; GMP, 96.8 0.00088 3E-08 51.7 3.8 25 115-139 6-30 (207)
192 2bbw_A Adenylate kinase 4, AK4 96.8 0.00094 3.2E-08 53.3 4.0 26 115-140 27-52 (246)
193 1nn5_A Similar to deoxythymidy 96.8 0.00096 3.3E-08 51.8 3.9 32 115-147 9-40 (215)
194 2pt5_A Shikimate kinase, SK; a 96.8 0.00095 3.2E-08 49.8 3.7 24 117-140 2-25 (168)
195 2pbr_A DTMP kinase, thymidylat 96.8 0.00094 3.2E-08 50.9 3.8 25 117-141 2-26 (195)
196 3tlx_A Adenylate kinase 2; str 96.8 0.0019 6.5E-08 51.6 5.7 27 114-140 28-54 (243)
197 3upu_A ATP-dependent DNA helic 96.8 0.0026 8.7E-08 55.8 6.9 42 100-142 31-72 (459)
198 1g41_A Heat shock protein HSLU 96.8 0.001 3.5E-08 57.9 4.2 48 94-141 15-76 (444)
199 1ye8_A Protein THEP1, hypothet 96.8 0.001 3.4E-08 50.7 3.7 25 117-141 2-26 (178)
200 3fb4_A Adenylate kinase; psych 96.8 0.00097 3.3E-08 52.0 3.8 24 117-140 2-25 (216)
201 2ga8_A Hypothetical 39.9 kDa p 96.8 0.0019 6.4E-08 54.5 5.6 42 100-141 5-50 (359)
202 2bdt_A BH3686; alpha-beta prot 96.8 0.00091 3.1E-08 51.0 3.5 22 116-137 3-24 (189)
203 3asz_A Uridine kinase; cytidin 96.7 0.0011 3.8E-08 51.4 4.0 27 114-140 5-31 (211)
204 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.7E-08 53.6 3.9 27 115-141 4-30 (260)
205 1zd8_A GTP:AMP phosphotransfer 96.7 0.00097 3.3E-08 52.5 3.5 26 115-140 7-32 (227)
206 1zak_A Adenylate kinase; ATP:A 96.7 0.001 3.5E-08 52.2 3.6 26 115-140 5-30 (222)
207 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.8E-08 50.9 3.8 25 114-138 7-31 (203)
208 1lvg_A Guanylate kinase, GMP k 96.7 0.00096 3.3E-08 51.6 3.3 25 116-140 5-29 (198)
209 3ney_A 55 kDa erythrocyte memb 96.7 0.0011 3.9E-08 51.2 3.7 27 114-140 18-44 (197)
210 3dl0_A Adenylate kinase; phosp 96.7 0.0011 3.7E-08 51.8 3.5 24 117-140 2-25 (216)
211 2if2_A Dephospho-COA kinase; a 96.7 0.0011 3.6E-08 51.3 3.4 22 116-137 2-23 (204)
212 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.8E-08 51.0 3.4 25 115-139 4-28 (204)
213 1xjc_A MOBB protein homolog; s 96.6 0.0019 6.6E-08 48.7 4.5 28 115-142 4-31 (169)
214 3p32_A Probable GTPase RV1496/ 96.6 0.0054 1.8E-07 51.8 7.7 40 103-142 65-106 (355)
215 3io3_A DEHA2D07832P; chaperone 96.6 0.0035 1.2E-07 52.9 6.4 46 110-157 13-60 (348)
216 2p5t_B PEZT; postsegregational 96.6 0.0017 5.9E-08 52.1 4.3 27 114-140 31-57 (253)
217 1rj9_A FTSY, signal recognitio 96.6 0.0025 8.7E-08 52.7 5.3 29 114-142 101-129 (304)
218 1jjv_A Dephospho-COA kinase; P 96.6 0.0013 4.3E-08 50.9 3.3 22 116-137 3-24 (206)
219 1m7g_A Adenylylsulfate kinase; 96.6 0.0021 7.1E-08 50.0 4.5 27 114-140 24-50 (211)
220 1gtv_A TMK, thymidylate kinase 96.6 0.00072 2.5E-08 52.5 1.8 25 117-141 2-26 (214)
221 4gp7_A Metallophosphoesterase; 96.6 0.0011 3.9E-08 49.9 2.8 21 115-135 9-29 (171)
222 3iqw_A Tail-anchored protein t 96.6 0.0038 1.3E-07 52.4 6.3 50 110-161 11-60 (334)
223 4b3f_X DNA-binding protein smu 96.6 0.0035 1.2E-07 57.3 6.5 63 101-168 193-255 (646)
224 2qt1_A Nicotinamide riboside k 96.5 0.0016 5.4E-08 50.5 3.6 25 115-139 21-45 (207)
225 4e22_A Cytidylate kinase; P-lo 96.5 0.0016 5.5E-08 52.3 3.6 27 114-140 26-52 (252)
226 2pez_A Bifunctional 3'-phospho 96.5 0.002 6.9E-08 48.6 4.0 27 115-141 5-31 (179)
227 3cmw_A Protein RECA, recombina 96.5 0.0083 2.8E-07 60.2 9.2 85 114-205 1430-1520(1706)
228 3sr0_A Adenylate kinase; phosp 96.5 0.0019 6.5E-08 50.4 3.8 24 117-140 2-25 (206)
229 2grj_A Dephospho-COA kinase; T 96.5 0.0018 6.3E-08 49.8 3.7 26 114-139 11-36 (192)
230 3be4_A Adenylate kinase; malar 96.5 0.0018 6.1E-08 50.7 3.6 25 116-140 6-30 (217)
231 2xb4_A Adenylate kinase; ATP-b 96.5 0.0019 6.3E-08 50.9 3.7 24 117-140 2-25 (223)
232 1znw_A Guanylate kinase, GMP k 96.5 0.0017 5.9E-08 50.4 3.5 25 115-139 20-44 (207)
233 1cr0_A DNA primase/helicase; R 96.5 0.0065 2.2E-07 49.8 7.2 39 115-154 35-73 (296)
234 1e4v_A Adenylate kinase; trans 96.5 0.0018 6.3E-08 50.4 3.7 24 117-140 2-25 (214)
235 3aez_A Pantothenate kinase; tr 96.5 0.0039 1.3E-07 51.8 5.8 42 113-154 88-129 (312)
236 3tqc_A Pantothenate kinase; bi 96.5 0.0031 1E-07 52.6 5.1 28 114-141 91-118 (321)
237 1u0j_A DNA replication protein 96.5 0.0035 1.2E-07 50.7 5.3 38 102-139 89-128 (267)
238 2jeo_A Uridine-cytidine kinase 96.5 0.0022 7.6E-08 51.2 4.1 26 114-139 24-49 (245)
239 1z6g_A Guanylate kinase; struc 96.5 0.0017 5.7E-08 51.0 3.3 25 115-139 23-47 (218)
240 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0041 1.4E-07 52.0 5.9 107 116-235 172-278 (330)
241 1ak2_A Adenylate kinase isoenz 96.5 0.0022 7.5E-08 50.7 4.0 26 115-140 16-41 (233)
242 1zu4_A FTSY; GTPase, signal re 96.5 0.0038 1.3E-07 52.1 5.5 39 114-154 104-142 (320)
243 2f1r_A Molybdopterin-guanine d 96.4 0.0014 4.8E-08 49.6 2.6 37 116-152 3-39 (171)
244 4gzl_A RAS-related C3 botulinu 96.4 0.0019 6.6E-08 49.8 3.5 40 99-138 14-53 (204)
245 3lv8_A DTMP kinase, thymidylat 96.4 0.0071 2.4E-07 48.1 6.8 37 115-152 27-63 (236)
246 3ake_A Cytidylate kinase; CMP 96.4 0.0022 7.6E-08 49.4 3.8 24 117-140 4-27 (208)
247 2fz4_A DNA repair protein RAD2 96.4 0.017 5.9E-07 45.8 9.0 41 96-139 92-132 (237)
248 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.3E-08 50.7 3.8 26 115-140 9-34 (233)
249 1s96_A Guanylate kinase, GMP k 96.4 0.0024 8.2E-08 50.3 3.7 26 115-140 16-41 (219)
250 3ch4_B Pmkase, phosphomevalona 96.4 0.026 9E-07 43.6 9.4 92 114-215 10-123 (202)
251 2r8r_A Sensor protein; KDPD, P 96.4 0.0064 2.2E-07 48.0 6.0 42 116-159 7-48 (228)
252 4tmk_A Protein (thymidylate ki 96.4 0.0082 2.8E-07 47.0 6.7 52 116-168 4-55 (213)
253 1vht_A Dephospho-COA kinase; s 96.3 0.0027 9.2E-08 49.6 3.9 23 115-137 4-26 (218)
254 3nwj_A ATSK2; P loop, shikimat 96.3 0.0022 7.4E-08 51.6 3.4 25 116-140 49-73 (250)
255 1cp2_A CP2, nitrogenase iron p 96.3 0.0056 1.9E-07 49.3 5.9 40 116-157 2-41 (269)
256 2yhs_A FTSY, cell division pro 96.3 0.032 1.1E-06 49.1 10.9 29 114-142 292-320 (503)
257 2eyu_A Twitching motility prot 96.3 0.0057 1.9E-07 49.4 5.7 110 114-235 24-136 (261)
258 1np6_A Molybdopterin-guanine d 96.3 0.0049 1.7E-07 46.7 5.0 28 115-142 6-33 (174)
259 1htw_A HI0065; nucleotide-bind 96.3 0.0027 9.2E-08 47.3 3.5 26 114-139 32-57 (158)
260 2i3b_A HCR-ntpase, human cance 96.3 0.0024 8.1E-08 49.1 3.2 25 116-140 2-26 (189)
261 3b9q_A Chloroplast SRP recepto 96.3 0.0044 1.5E-07 51.2 5.0 27 115-141 100-126 (302)
262 1a7j_A Phosphoribulokinase; tr 96.3 0.0016 5.6E-08 53.5 2.4 27 114-140 4-30 (290)
263 1g8f_A Sulfate adenylyltransfe 96.3 0.005 1.7E-07 54.6 5.6 47 95-141 373-421 (511)
264 3d3q_A TRNA delta(2)-isopenten 96.3 0.0026 9E-08 53.3 3.7 25 116-140 8-32 (340)
265 3llm_A ATP-dependent RNA helic 96.3 0.016 5.4E-07 45.8 8.1 23 116-138 77-99 (235)
266 2f6r_A COA synthase, bifunctio 96.3 0.0027 9.3E-08 51.9 3.7 24 114-137 74-97 (281)
267 4edh_A DTMP kinase, thymidylat 96.3 0.011 3.7E-07 46.3 7.0 32 115-147 6-37 (213)
268 3crm_A TRNA delta(2)-isopenten 96.3 0.0026 8.8E-08 53.0 3.5 25 116-140 6-30 (323)
269 3qfl_A MLA10; coiled-coil, (CC 96.3 0.0049 1.7E-07 43.3 4.5 38 9-46 3-40 (115)
270 3kjh_A CO dehydrogenase/acetyl 96.3 0.0052 1.8E-07 48.6 5.2 41 118-160 3-43 (254)
271 1yrb_A ATP(GTP)binding protein 96.2 0.0071 2.4E-07 48.4 5.9 27 114-140 13-39 (262)
272 4eaq_A DTMP kinase, thymidylat 96.2 0.006 2.1E-07 48.2 5.4 27 115-141 26-52 (229)
273 3lnc_A Guanylate kinase, GMP k 96.2 0.0019 6.4E-08 51.0 2.4 25 115-139 27-52 (231)
274 3exa_A TRNA delta(2)-isopenten 96.2 0.003 1E-07 52.4 3.5 26 115-140 3-28 (322)
275 3vr4_D V-type sodium ATPase su 96.2 0.0098 3.3E-07 51.7 6.8 90 116-205 152-259 (465)
276 3zvl_A Bifunctional polynucleo 96.2 0.0025 8.4E-08 55.2 3.1 27 113-139 256-282 (416)
277 2afh_E Nitrogenase iron protei 96.2 0.0068 2.3E-07 49.5 5.7 40 116-157 3-42 (289)
278 1ltq_A Polynucleotide kinase; 96.2 0.0032 1.1E-07 51.6 3.7 23 116-138 3-25 (301)
279 3a8t_A Adenylate isopentenyltr 96.2 0.0026 8.7E-08 53.3 2.9 26 115-140 40-65 (339)
280 3b85_A Phosphate starvation-in 96.2 0.0038 1.3E-07 48.7 3.8 23 116-138 23-45 (208)
281 3foz_A TRNA delta(2)-isopenten 96.1 0.0041 1.4E-07 51.4 4.0 26 115-140 10-35 (316)
282 2og2_A Putative signal recogni 96.1 0.0057 2E-07 51.8 5.0 27 115-141 157-183 (359)
283 1sq5_A Pantothenate kinase; P- 96.1 0.0042 1.4E-07 51.4 4.1 27 114-140 79-105 (308)
284 4dzz_A Plasmid partitioning pr 96.1 0.0082 2.8E-07 46.0 5.3 44 116-161 2-46 (206)
285 4akg_A Glutathione S-transfera 96.1 0.015 5.3E-07 60.8 8.7 80 116-205 1268-1347(2695)
286 3ld9_A DTMP kinase, thymidylat 96.1 0.0084 2.9E-07 47.3 5.4 56 112-168 18-74 (223)
287 2woj_A ATPase GET3; tail-ancho 96.1 0.013 4.6E-07 49.4 6.9 45 112-158 15-61 (354)
288 2onk_A Molybdate/tungstate ABC 96.0 0.0044 1.5E-07 49.5 3.6 25 116-140 25-49 (240)
289 3tif_A Uncharacterized ABC tra 96.0 0.0033 1.1E-07 50.0 2.8 25 115-139 31-55 (235)
290 2woo_A ATPase GET3; tail-ancho 96.0 0.012 4.1E-07 49.1 6.3 42 112-155 16-57 (329)
291 1oix_A RAS-related protein RAB 96.0 0.0044 1.5E-07 47.2 3.4 25 115-139 29-53 (191)
292 3l0o_A Transcription terminati 96.0 0.0027 9.4E-08 54.1 2.3 51 105-156 164-216 (427)
293 3fkq_A NTRC-like two-domain pr 96.0 0.01 3.4E-07 50.5 5.8 39 114-154 142-181 (373)
294 2ocp_A DGK, deoxyguanosine kin 96.0 0.0049 1.7E-07 48.9 3.6 26 115-140 2-27 (241)
295 1nlf_A Regulatory protein REPA 95.9 0.0042 1.5E-07 50.5 3.2 42 115-156 30-79 (279)
296 1q3t_A Cytidylate kinase; nucl 95.9 0.0062 2.1E-07 48.2 4.2 27 114-140 15-41 (236)
297 3f9v_A Minichromosome maintena 95.9 0.0025 8.4E-08 57.8 1.9 47 93-139 294-351 (595)
298 2f9l_A RAB11B, member RAS onco 95.9 0.0047 1.6E-07 47.3 3.3 23 116-138 6-28 (199)
299 2pcj_A ABC transporter, lipopr 95.9 0.0037 1.3E-07 49.3 2.7 25 115-139 30-54 (224)
300 1tf7_A KAIC; homohexamer, hexa 95.9 0.015 5.2E-07 51.7 7.0 37 115-153 281-317 (525)
301 2v3c_C SRP54, signal recogniti 95.9 0.0043 1.5E-07 53.9 3.2 38 115-154 99-136 (432)
302 2wji_A Ferrous iron transport 95.9 0.0057 1.9E-07 45.3 3.4 23 116-138 4-26 (165)
303 2qmh_A HPR kinase/phosphorylas 95.9 0.0039 1.3E-07 48.2 2.5 25 115-139 34-58 (205)
304 2v9p_A Replication protein E1; 95.9 0.0059 2E-07 50.5 3.8 26 114-139 125-150 (305)
305 1ihu_A Arsenical pump-driving 95.9 0.014 4.9E-07 52.6 6.6 44 113-158 6-49 (589)
306 2zej_A Dardarin, leucine-rich 95.8 0.0041 1.4E-07 47.0 2.6 21 117-137 4-24 (184)
307 2cbz_A Multidrug resistance-as 95.8 0.0044 1.5E-07 49.3 2.8 26 115-140 31-56 (237)
308 1zj6_A ADP-ribosylation factor 95.8 0.011 3.6E-07 44.7 4.9 34 104-138 6-39 (187)
309 1moz_A ARL1, ADP-ribosylation 95.8 0.0061 2.1E-07 45.6 3.5 34 104-137 6-40 (183)
310 3zq6_A Putative arsenical pump 95.8 0.017 5.8E-07 48.1 6.4 43 115-159 14-56 (324)
311 1svm_A Large T antigen; AAA+ f 95.8 0.0063 2.2E-07 51.9 3.9 28 113-140 167-194 (377)
312 3cr8_A Sulfate adenylyltranfer 95.8 0.0089 3E-07 53.6 4.9 46 97-142 349-396 (552)
313 3eph_A TRNA isopentenyltransfe 95.8 0.0064 2.2E-07 52.1 3.8 25 116-140 3-27 (409)
314 2dyk_A GTP-binding protein; GT 95.8 0.0065 2.2E-07 44.3 3.5 23 116-138 2-24 (161)
315 1b0u_A Histidine permease; ABC 95.8 0.0046 1.6E-07 50.0 2.8 25 115-139 32-56 (262)
316 2ged_A SR-beta, signal recogni 95.8 0.014 4.8E-07 44.1 5.4 26 114-139 47-72 (193)
317 3ug7_A Arsenical pump-driving 95.8 0.016 5.3E-07 48.9 6.2 41 114-156 25-65 (349)
318 3gfo_A Cobalt import ATP-bindi 95.8 0.0046 1.6E-07 50.4 2.8 25 115-139 34-58 (275)
319 2d2e_A SUFC protein; ABC-ATPas 95.8 0.0058 2E-07 49.0 3.3 24 115-138 29-52 (250)
320 2ce2_X GTPase HRAS; signaling 95.8 0.0061 2.1E-07 44.5 3.2 23 117-139 5-27 (166)
321 2zu0_C Probable ATP-dependent 95.7 0.0059 2E-07 49.5 3.3 24 115-138 46-69 (267)
322 1m8p_A Sulfate adenylyltransfe 95.7 0.013 4.6E-07 52.7 5.8 29 113-141 394-422 (573)
323 1ji0_A ABC transporter; ATP bi 95.7 0.0051 1.8E-07 49.0 2.8 25 115-139 32-56 (240)
324 4g1u_C Hemin import ATP-bindin 95.7 0.0051 1.7E-07 49.9 2.8 25 115-139 37-61 (266)
325 1g6h_A High-affinity branched- 95.7 0.0051 1.8E-07 49.5 2.8 25 115-139 33-57 (257)
326 1z2a_A RAS-related protein RAB 95.7 0.0067 2.3E-07 44.5 3.3 25 115-139 5-29 (168)
327 1fzq_A ADP-ribosylation factor 95.7 0.0095 3.2E-07 44.8 4.1 26 113-138 14-39 (181)
328 2ff7_A Alpha-hemolysin translo 95.7 0.0054 1.9E-07 49.1 2.8 26 115-140 35-60 (247)
329 2olj_A Amino acid ABC transpor 95.7 0.0054 1.9E-07 49.6 2.8 27 114-140 49-75 (263)
330 1mv5_A LMRA, multidrug resista 95.7 0.0055 1.9E-07 48.9 2.8 25 115-139 28-52 (243)
331 2pze_A Cystic fibrosis transme 95.7 0.0057 1.9E-07 48.4 2.8 26 115-140 34-59 (229)
332 1sgw_A Putative ABC transporte 95.6 0.0049 1.7E-07 48.3 2.4 26 115-140 35-60 (214)
333 3v9p_A DTMP kinase, thymidylat 95.6 0.021 7.3E-07 45.0 6.1 28 115-142 25-52 (227)
334 3gqb_B V-type ATP synthase bet 95.6 0.023 8E-07 49.3 6.7 90 116-205 148-262 (464)
335 2h92_A Cytidylate kinase; ross 95.6 0.0072 2.5E-07 47.0 3.3 25 116-140 4-28 (219)
336 1jr3_D DNA polymerase III, del 95.6 0.043 1.5E-06 45.8 8.3 97 114-231 17-116 (343)
337 2c61_A A-type ATP synthase non 95.6 0.014 4.7E-07 51.0 5.3 89 116-204 153-259 (469)
338 3sop_A Neuronal-specific septi 95.6 0.0082 2.8E-07 48.7 3.6 24 117-140 4-27 (270)
339 2ghi_A Transport protein; mult 95.6 0.006 2.1E-07 49.2 2.8 25 115-139 46-70 (260)
340 1vpl_A ABC transporter, ATP-bi 95.6 0.006 2.1E-07 49.2 2.8 25 115-139 41-65 (256)
341 2ixe_A Antigen peptide transpo 95.6 0.006 2.1E-07 49.6 2.8 27 114-140 44-70 (271)
342 2gks_A Bifunctional SAT/APS ki 95.6 0.018 6E-07 51.6 6.0 47 96-142 351-399 (546)
343 2wjg_A FEOB, ferrous iron tran 95.6 0.0083 2.8E-07 45.1 3.4 23 116-138 8-30 (188)
344 1nrj_B SR-beta, signal recogni 95.6 0.0097 3.3E-07 46.1 3.9 26 114-139 11-36 (218)
345 2axn_A 6-phosphofructo-2-kinas 95.6 0.0091 3.1E-07 53.1 4.1 29 114-142 34-62 (520)
346 2www_A Methylmalonic aciduria 95.6 0.016 5.4E-07 48.8 5.5 27 114-140 73-99 (349)
347 2yv5_A YJEQ protein; hydrolase 95.6 0.013 4.6E-07 48.2 4.9 34 103-140 156-189 (302)
348 4hlc_A DTMP kinase, thymidylat 95.6 0.028 9.7E-07 43.5 6.5 26 116-141 3-28 (205)
349 1r8s_A ADP-ribosylation factor 95.6 0.0087 3E-07 43.8 3.4 23 117-139 2-24 (164)
350 1u8z_A RAS-related protein RAL 95.6 0.0083 2.8E-07 43.9 3.3 24 116-139 5-28 (168)
351 3con_A GTPase NRAS; structural 95.6 0.0081 2.8E-07 45.3 3.3 24 116-139 22-45 (190)
352 2gk6_A Regulator of nonsense t 95.6 0.025 8.4E-07 51.5 7.0 50 116-167 196-245 (624)
353 1kao_A RAP2A; GTP-binding prot 95.5 0.0083 2.8E-07 43.8 3.2 24 116-139 4-27 (167)
354 3fvq_A Fe(3+) IONS import ATP- 95.5 0.0073 2.5E-07 51.1 3.2 26 115-140 30-55 (359)
355 2qi9_C Vitamin B12 import ATP- 95.5 0.0065 2.2E-07 48.7 2.8 25 115-139 26-50 (249)
356 2yz2_A Putative ABC transporte 95.5 0.0066 2.2E-07 49.2 2.8 25 115-139 33-57 (266)
357 3gmt_A Adenylate kinase; ssgci 95.5 0.0099 3.4E-07 47.0 3.7 26 115-140 8-33 (230)
358 2ihy_A ABC transporter, ATP-bi 95.5 0.0066 2.3E-07 49.6 2.8 25 115-139 47-71 (279)
359 1p9r_A General secretion pathw 95.5 0.027 9.1E-07 48.7 6.7 29 113-141 165-193 (418)
360 1z08_A RAS-related protein RAB 95.5 0.0088 3E-07 44.0 3.3 23 116-138 7-29 (170)
361 2oze_A ORF delta'; para, walke 95.5 0.027 9.1E-07 46.0 6.5 54 102-158 22-78 (298)
362 2lkc_A Translation initiation 95.5 0.0099 3.4E-07 44.2 3.5 25 114-138 7-31 (178)
363 1c1y_A RAS-related protein RAP 95.5 0.009 3.1E-07 43.8 3.3 23 116-138 4-26 (167)
364 2nq2_C Hypothetical ABC transp 95.5 0.0068 2.3E-07 48.7 2.7 26 115-140 31-56 (253)
365 1ek0_A Protein (GTP-binding pr 95.5 0.0091 3.1E-07 43.8 3.3 23 117-139 5-27 (170)
366 1ypw_A Transitional endoplasmi 95.5 0.0073 2.5E-07 56.7 3.3 49 93-141 476-537 (806)
367 2nzj_A GTP-binding protein REM 95.5 0.01 3.5E-07 43.9 3.6 24 115-138 4-27 (175)
368 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0087 3E-07 45.0 3.2 25 115-139 7-31 (184)
369 1z0j_A RAB-22, RAS-related pro 95.4 0.0094 3.2E-07 43.8 3.2 24 116-139 7-30 (170)
370 1ky3_A GTP-binding protein YPT 95.4 0.0093 3.2E-07 44.4 3.2 26 114-139 7-32 (182)
371 3tmk_A Thymidylate kinase; pho 95.4 0.032 1.1E-06 43.6 6.4 27 115-141 5-31 (216)
372 3q85_A GTP-binding protein REM 95.4 0.0089 3.1E-07 44.0 3.1 22 116-137 3-24 (169)
373 3ihw_A Centg3; RAS, centaurin, 95.4 0.0094 3.2E-07 45.0 3.3 25 115-139 20-44 (184)
374 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0096 3.3E-07 44.2 3.2 24 115-138 7-30 (177)
375 2j9r_A Thymidine kinase; TK1, 95.4 0.0097 3.3E-07 46.5 3.3 109 115-235 28-141 (214)
376 1svi_A GTP-binding protein YSX 95.4 0.011 3.8E-07 44.7 3.7 25 114-138 22-46 (195)
377 3k9g_A PF-32 protein; ssgcid, 95.4 0.059 2E-06 43.1 8.2 47 113-162 25-72 (267)
378 1g16_A RAS-related protein SEC 95.4 0.0097 3.3E-07 43.7 3.2 23 116-138 4-26 (170)
379 2qm8_A GTPase/ATPase; G protei 95.4 0.025 8.6E-07 47.4 6.0 29 113-141 53-81 (337)
380 1r2q_A RAS-related protein RAB 95.4 0.01 3.5E-07 43.5 3.3 23 116-138 7-29 (170)
381 3q72_A GTP-binding protein RAD 95.4 0.0086 2.9E-07 43.9 2.8 21 117-137 4-24 (166)
382 1f6b_A SAR1; gtpases, N-termin 95.4 0.015 5E-07 44.5 4.2 24 114-137 24-47 (198)
383 2erx_A GTP-binding protein DI- 95.4 0.0096 3.3E-07 43.8 3.1 23 116-138 4-26 (172)
384 1z47_A CYSA, putative ABC-tran 95.4 0.0097 3.3E-07 50.3 3.3 26 115-140 41-66 (355)
385 1p5z_B DCK, deoxycytidine kina 95.3 0.0044 1.5E-07 49.9 1.2 27 114-140 23-49 (263)
386 2fn4_A P23, RAS-related protei 95.3 0.01 3.5E-07 44.1 3.2 24 115-138 9-32 (181)
387 3c5c_A RAS-like protein 12; GD 95.3 0.011 3.6E-07 44.8 3.2 25 115-139 21-45 (187)
388 2ewv_A Twitching motility prot 95.3 0.017 5.7E-07 49.2 4.7 110 113-234 134-246 (372)
389 2p67_A LAO/AO transport system 95.3 0.029 9.8E-07 47.1 6.2 29 112-140 53-81 (341)
390 2gj8_A MNME, tRNA modification 95.3 0.0098 3.3E-07 44.4 3.0 23 116-138 5-27 (172)
391 2cjw_A GTP-binding protein GEM 95.3 0.011 3.9E-07 45.0 3.4 24 115-138 6-29 (192)
392 3rlf_A Maltose/maltodextrin im 95.3 0.0099 3.4E-07 50.7 3.3 26 115-140 29-54 (381)
393 2pjz_A Hypothetical protein ST 95.3 0.0086 3E-07 48.4 2.8 25 115-139 30-54 (263)
394 2vp4_A Deoxynucleoside kinase; 95.3 0.0075 2.6E-07 47.6 2.4 25 114-138 19-43 (230)
395 1upt_A ARL1, ADP-ribosylation 95.3 0.011 3.8E-07 43.5 3.3 25 115-139 7-31 (171)
396 2hxs_A RAB-26, RAS-related pro 95.3 0.0095 3.2E-07 44.3 2.8 24 115-138 6-29 (178)
397 1m2o_B GTP-binding protein SAR 95.3 0.011 3.7E-07 44.9 3.2 24 115-138 23-46 (190)
398 2atv_A RERG, RAS-like estrogen 95.3 0.013 4.5E-07 44.5 3.7 26 113-138 26-51 (196)
399 2yyz_A Sugar ABC transporter, 95.3 0.01 3.5E-07 50.2 3.3 26 115-140 29-54 (359)
400 1z0f_A RAB14, member RAS oncog 95.3 0.011 3.9E-07 43.7 3.3 25 115-139 15-39 (179)
401 2b6h_A ADP-ribosylation factor 95.3 0.0096 3.3E-07 45.3 2.9 26 112-137 26-51 (192)
402 3e1s_A Exodeoxyribonuclease V, 95.3 0.028 9.7E-07 50.6 6.3 39 102-142 193-231 (574)
403 3fdi_A Uncharacterized protein 95.3 0.013 4.5E-07 45.3 3.6 27 115-141 6-32 (201)
404 3bc1_A RAS-related protein RAB 95.3 0.011 3.9E-07 44.4 3.3 24 115-138 11-34 (195)
405 2qe7_A ATP synthase subunit al 95.3 0.023 7.8E-07 49.9 5.5 87 115-205 162-265 (502)
406 2it1_A 362AA long hypothetical 95.3 0.011 3.6E-07 50.2 3.3 26 115-140 29-54 (362)
407 2r9v_A ATP synthase subunit al 95.3 0.023 7.8E-07 50.0 5.4 86 116-205 176-278 (515)
408 1bif_A 6-phosphofructo-2-kinas 95.3 0.013 4.5E-07 51.4 4.0 29 114-142 38-66 (469)
409 3mfy_A V-type ATP synthase alp 95.2 0.07 2.4E-06 47.5 8.5 88 115-206 227-336 (588)
410 1wcv_1 SOJ, segregation protei 95.2 0.016 5.4E-07 46.4 4.2 42 114-157 5-47 (257)
411 1lw7_A Transcriptional regulat 95.2 0.011 3.8E-07 50.0 3.4 27 115-141 170-196 (365)
412 1g29_1 MALK, maltose transport 95.2 0.011 3.7E-07 50.3 3.3 26 115-140 29-54 (372)
413 1u0l_A Probable GTPase ENGC; p 95.2 0.019 6.4E-07 47.3 4.7 35 103-140 160-194 (301)
414 2iwr_A Centaurin gamma 1; ANK 95.2 0.0084 2.9E-07 44.7 2.3 24 115-138 7-30 (178)
415 4dsu_A GTPase KRAS, isoform 2B 95.2 0.012 4.2E-07 44.1 3.2 24 116-139 5-28 (189)
416 2y8e_A RAB-protein 6, GH09086P 95.2 0.012 4.1E-07 43.6 3.2 23 116-138 15-37 (179)
417 1v43_A Sugar-binding transport 95.2 0.011 3.8E-07 50.2 3.3 25 115-139 37-61 (372)
418 3kkq_A RAS-related protein M-R 95.2 0.012 4.2E-07 43.9 3.3 25 115-139 18-42 (183)
419 2oil_A CATX-8, RAS-related pro 95.2 0.012 4.2E-07 44.5 3.3 25 115-139 25-49 (193)
420 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.013 4.3E-07 43.9 3.3 23 116-138 6-28 (186)
421 3dz8_A RAS-related protein RAB 95.2 0.013 4.4E-07 44.4 3.3 24 116-139 24-47 (191)
422 3pqc_A Probable GTP-binding pr 95.2 0.013 4.4E-07 44.2 3.3 25 115-139 23-47 (195)
423 2bme_A RAB4A, RAS-related prot 95.2 0.012 4.2E-07 44.0 3.2 25 115-139 10-34 (186)
424 1nij_A Hypothetical protein YJ 95.2 0.011 3.7E-07 49.1 3.1 26 114-139 3-28 (318)
425 3bfv_A CAPA1, CAPB2, membrane 95.2 0.051 1.8E-06 44.0 7.0 53 101-155 64-121 (271)
426 2ck3_A ATP synthase subunit al 95.2 0.033 1.1E-06 49.0 6.2 91 115-205 162-273 (510)
427 2cxx_A Probable GTP-binding pr 95.2 0.011 3.9E-07 44.3 2.9 22 117-138 3-24 (190)
428 2a9k_A RAS-related protein RAL 95.2 0.013 4.5E-07 43.8 3.3 25 115-139 18-42 (187)
429 3bwd_D RAC-like GTP-binding pr 95.2 0.013 4.5E-07 43.6 3.3 24 115-138 8-31 (182)
430 3t1o_A Gliding protein MGLA; G 95.2 0.013 4.4E-07 44.2 3.3 24 115-138 14-37 (198)
431 3cwq_A Para family chromosome 95.2 0.039 1.3E-06 42.7 6.1 43 117-162 2-45 (209)
432 3tui_C Methionine import ATP-b 95.1 0.012 4.2E-07 49.8 3.3 27 114-140 53-79 (366)
433 2efe_B Small GTP-binding prote 95.1 0.013 4.5E-07 43.6 3.3 23 116-138 13-35 (181)
434 1ksh_A ARF-like protein 2; sma 95.1 0.014 4.8E-07 43.8 3.4 27 113-139 16-42 (186)
435 3clv_A RAB5 protein, putative; 95.1 0.017 6E-07 43.6 3.9 25 115-139 7-31 (208)
436 2orv_A Thymidine kinase; TP4A 95.1 0.028 9.7E-07 44.4 5.1 106 115-234 19-128 (234)
437 3t5g_A GTP-binding protein RHE 95.1 0.013 4.5E-07 43.7 3.2 25 115-139 6-30 (181)
438 2g6b_A RAS-related protein RAB 95.1 0.014 4.8E-07 43.4 3.3 25 115-139 10-34 (180)
439 3la6_A Tyrosine-protein kinase 95.1 0.09 3.1E-06 42.9 8.3 54 101-156 74-132 (286)
440 3cio_A ETK, tyrosine-protein k 95.1 0.079 2.7E-06 43.5 8.0 42 112-155 101-143 (299)
441 3nh6_A ATP-binding cassette SU 95.1 0.0077 2.6E-07 49.8 1.9 27 114-140 79-105 (306)
442 3kta_A Chromosome segregation 95.1 0.014 4.8E-07 43.9 3.2 24 116-139 27-50 (182)
443 3d31_A Sulfate/molybdate ABC t 95.1 0.0094 3.2E-07 50.2 2.4 26 115-140 26-51 (348)
444 3tw8_B RAS-related protein RAB 95.1 0.013 4.3E-07 43.6 2.9 24 115-138 9-32 (181)
445 2bov_A RAla, RAS-related prote 95.1 0.014 4.9E-07 44.5 3.3 25 115-139 14-38 (206)
446 1vg8_A RAS-related protein RAB 95.1 0.014 4.9E-07 44.6 3.2 25 115-139 8-32 (207)
447 3cbq_A GTP-binding protein REM 95.0 0.01 3.5E-07 45.3 2.4 22 115-136 23-44 (195)
448 3tqf_A HPR(Ser) kinase; transf 95.0 0.015 5.2E-07 43.8 3.2 23 116-138 17-39 (181)
449 2fh5_B SR-beta, signal recogni 95.0 0.014 4.9E-07 44.9 3.3 25 115-139 7-31 (214)
450 2bbs_A Cystic fibrosis transme 95.0 0.013 4.4E-07 48.1 3.1 26 115-140 64-89 (290)
451 1gwn_A RHO-related GTP-binding 95.0 0.014 4.8E-07 45.0 3.2 25 115-139 28-52 (205)
452 3oaa_A ATP synthase subunit al 95.0 0.11 3.7E-06 45.7 8.9 87 115-205 162-265 (513)
453 1zd9_A ADP-ribosylation factor 95.0 0.015 5.1E-07 43.9 3.3 25 115-139 22-46 (188)
454 3gd7_A Fusion complex of cysti 95.0 0.013 4.6E-07 50.1 3.2 26 114-139 46-71 (390)
455 2ew1_A RAS-related protein RAB 95.0 0.014 4.9E-07 44.8 3.2 25 115-139 26-50 (201)
456 3reg_A RHO-like small GTPase; 95.0 0.015 5.2E-07 44.0 3.3 25 115-139 23-47 (194)
457 3oes_A GTPase rhebl1; small GT 95.0 0.015 5E-07 44.5 3.2 26 114-139 23-48 (201)
458 1x6v_B Bifunctional 3'-phospho 95.0 0.017 5.8E-07 52.4 4.0 28 114-141 51-78 (630)
459 2fg5_A RAB-22B, RAS-related pr 95.0 0.015 5.1E-07 44.1 3.2 25 115-139 23-47 (192)
460 2gf9_A RAS-related protein RAB 95.0 0.016 5.4E-07 43.7 3.3 24 116-139 23-46 (189)
461 2a5j_A RAS-related protein RAB 95.0 0.016 5.4E-07 43.9 3.3 24 116-139 22-45 (191)
462 3tkl_A RAS-related protein RAB 94.9 0.016 5.6E-07 43.7 3.3 25 115-139 16-40 (196)
463 1pui_A ENGB, probable GTP-bind 94.9 0.0098 3.3E-07 45.7 2.0 26 113-138 24-49 (210)
464 1z06_A RAS-related protein RAB 94.9 0.017 5.7E-07 43.6 3.2 25 115-139 20-44 (189)
465 4dkx_A RAS-related protein RAB 94.9 0.016 5.6E-07 45.3 3.3 22 117-138 15-36 (216)
466 3ez2_A Plasmid partition prote 94.9 0.079 2.7E-06 45.2 7.8 46 114-159 107-157 (398)
467 2xj4_A MIPZ; replication, cell 94.9 0.037 1.3E-06 45.0 5.5 46 116-163 5-52 (286)
468 3igf_A ALL4481 protein; two-do 94.9 0.018 6.3E-07 48.9 3.8 40 116-158 3-42 (374)
469 2gf0_A GTP-binding protein DI- 94.9 0.016 5.5E-07 43.9 3.2 24 115-138 8-31 (199)
470 2g3y_A GTP-binding protein GEM 94.9 0.016 5.4E-07 45.2 3.1 23 115-137 37-59 (211)
471 1x3s_A RAS-related protein RAB 94.9 0.017 5.9E-07 43.5 3.3 24 116-139 16-39 (195)
472 2p5s_A RAS and EF-hand domain 94.9 0.017 6E-07 44.0 3.3 25 114-138 27-51 (199)
473 1oxx_K GLCV, glucose, ABC tran 94.9 0.0089 3.1E-07 50.5 1.7 25 115-139 31-55 (353)
474 2bcg_Y Protein YP2, GTP-bindin 94.8 0.017 6E-07 44.1 3.2 25 115-139 8-32 (206)
475 1zbd_A Rabphilin-3A; G protein 94.8 0.017 5.8E-07 44.0 3.1 24 116-139 9-32 (203)
476 2rcn_A Probable GTPase ENGC; Y 94.8 0.031 1E-06 47.2 4.9 25 116-140 216-240 (358)
477 1tq4_A IIGP1, interferon-induc 94.8 0.02 6.8E-07 49.4 3.8 24 115-138 69-92 (413)
478 2qnr_A Septin-2, protein NEDD5 94.8 0.014 4.8E-07 48.1 2.7 22 116-137 19-40 (301)
479 3vr4_A V-type sodium ATPase ca 94.8 0.098 3.3E-06 46.7 8.1 86 115-204 232-339 (600)
480 3q3j_B RHO-related GTP-binding 94.8 0.022 7.4E-07 44.2 3.6 25 115-139 27-51 (214)
481 3cph_A RAS-related protein SEC 94.7 0.02 6.9E-07 43.9 3.3 25 115-139 20-44 (213)
482 2j0v_A RAC-like GTP-binding pr 94.7 0.02 6.7E-07 44.1 3.2 25 115-139 9-33 (212)
483 2fv8_A H6, RHO-related GTP-bin 94.7 0.019 6.7E-07 44.0 3.2 24 115-138 25-48 (207)
484 2q3h_A RAS homolog gene family 94.7 0.019 6.6E-07 43.7 3.1 24 115-138 20-43 (201)
485 2xzl_A ATP-dependent helicase 94.7 0.048 1.6E-06 51.1 6.3 51 116-168 376-426 (802)
486 2atx_A Small GTP binding prote 94.7 0.02 6.8E-07 43.3 3.2 23 116-138 19-41 (194)
487 4bas_A ADP-ribosylation factor 94.7 0.021 7.1E-07 43.3 3.2 25 114-138 16-40 (199)
488 2xau_A PRE-mRNA-splicing facto 94.7 0.12 4.1E-06 48.2 8.9 23 116-138 110-132 (773)
489 2gza_A Type IV secretion syste 94.6 0.016 5.5E-07 49.0 2.8 26 116-141 176-201 (361)
490 2fu5_C RAS-related protein RAB 94.6 0.011 3.8E-07 44.2 1.6 24 115-138 8-31 (183)
491 2o52_A RAS-related protein RAB 94.6 0.019 6.6E-07 43.8 3.0 24 115-138 25-48 (200)
492 2wjy_A Regulator of nonsense t 94.6 0.06 2.1E-06 50.4 6.8 50 116-167 372-421 (800)
493 2hup_A RAS-related protein RAB 94.6 0.021 7.1E-07 43.7 3.2 24 115-138 29-52 (201)
494 3llu_A RAS-related GTP-binding 94.6 0.016 5.5E-07 44.1 2.5 24 115-138 20-43 (196)
495 3hdt_A Putative kinase; struct 94.6 0.028 9.5E-07 44.2 3.9 26 115-140 14-39 (223)
496 2gco_A H9, RHO-related GTP-bin 94.6 0.021 7.3E-07 43.6 3.2 25 115-139 25-49 (201)
497 2qu8_A Putative nucleolar GTP- 94.6 0.025 8.6E-07 44.2 3.6 25 114-138 28-52 (228)
498 3lxx_A GTPase IMAP family memb 94.6 0.023 7.8E-07 44.8 3.4 26 114-139 28-53 (239)
499 2obl_A ESCN; ATPase, hydrolase 94.6 0.023 7.9E-07 47.8 3.6 27 115-141 71-97 (347)
500 2j1l_A RHO-related GTP-binding 94.6 0.02 6.8E-07 44.3 3.0 24 115-138 34-57 (214)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=2.3e-25 Score=201.09 Aligned_cols=143 Identities=14% Similarity=0.140 Sum_probs=114.0
Q ss_pred ccchHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HhcccCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 037337 97 ESRMSTLNDILGALRNP---DISMLGICGMGGIGKTMLEKEVAR--KAKNHKLFDLVVFSEMSQSP--DIRKVQGEIADK 169 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~~~---~~~~v~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~ 169 (247)
+||+.++++|.++|... ..++|+|+||||+||||||+.+|+ +.+...+|++++|++++..+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999643 579999999999999999999998 45566679999999999885 789999999999
Q ss_pred hCCCCC--------CCChHHHHHHHHHHHcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhhccCC-
Q 037337 170 LGLTFR--------EESESGRARSLFSRLNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLSRKMD- 240 (247)
Q Consensus 170 l~~~~~--------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~~~~~- 240 (247)
++.... ..+.......+.+.|.+++|+||||||+|+..++ .+. ..+||+||||||++.|+.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~-~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA-ASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG-CCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH-cCC
Confidence 976421 1233456788888998744899999999998655 221 1269999999999999874 54
Q ss_pred Ccccee
Q 037337 241 SQQNFL 246 (247)
Q Consensus 241 ~~~~~~ 246 (247)
...+|+
T Consensus 284 ~~~~~~ 289 (549)
T 2a5y_B 284 TCEFIE 289 (549)
T ss_dssp CEEEEE
T ss_pred CCeEEE
Confidence 334454
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.5e-21 Score=190.33 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=114.9
Q ss_pred cccCCCcccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc--cCCCCEEEEEEeCCCCC--HHH
Q 037337 88 MSNKGYEAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKN--HKLFDLVVFSEMSQSPD--IRK 161 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~--~~~ 161 (247)
..|.++..|+||++++++|.++|. ++..++|+|+||||+||||||++++++.+. ..+++.++|++++...+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 345567789999999999999985 356789999999999999999999988543 22457899999988644 344
Q ss_pred HHHHHHHHhCCCCC-----CCChHHHHHHHHHHHcC-CCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 162 VQGEIADKLGLTFR-----EESESGRARSLFSRLNR-EKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 162 l~~~i~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
.+..++..+..... ..+.......+...+.. ++|+||||||+|+..+|..+ ++||+||+|||++.|+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 46667777754322 23456667777777765 24899999999998776654 5689999999999998
Q ss_pred hccCCCcccee
Q 037337 236 SRKMDSQQNFL 246 (247)
Q Consensus 236 ~~~~~~~~~~~ 246 (247)
...++....++
T Consensus 271 ~~~~~~~~~~~ 281 (1249)
T 3sfz_A 271 DSVMGPKHVVP 281 (1249)
T ss_dssp TTCCSCBCCEE
T ss_pred HhhcCCceEEE
Confidence 64455555544
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=8.7e-22 Score=184.46 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=104.8
Q ss_pred ccccchHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCC
Q 037337 95 AFESRMSTLNDILGALRN-PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL-VVFSEMSQSPDIRKVQGEIADKLGL 172 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l~~ 172 (247)
..+||+.+++.|.++|.+ ++.++|+|+||||+||||||+.++++.+...+|+. ++|++++..++...++..|+..++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 359999999999999875 45789999999999999999999987654445876 9999999999988888887775431
Q ss_pred ---CCC--CC-------ChHHHHHHHHHHH--cCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 173 ---TFR--EE-------SESGRARSLFSRL--NREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 173 ---~~~--~~-------~~~~~~~~l~~~l--~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
... .. +.......+.+.| ..++|+||||||+|+...|+.+. .||+||||||++.++.
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 111 00 1223445566655 13478999999999988887652 5899999999999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=169.87 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=104.8
Q ss_pred ccCCCcccccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcc-cCCC-CEEEEEEeCCCCCHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKN-HKLF-DLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~l~~ 164 (247)
.|+.+..|+||+.+++.|.++|.. ++.++|+|+|+||+||||||..++++... ..+| ++++|++++.. +...++.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 355678899999999999999973 45789999999999999999999987643 3347 57999999876 3333443
Q ss_pred H---HHHHhCCC-----CCCCChHHHHHHHHHHHcC-CCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 165 E---IADKLGLT-----FREESESGRARSLFSRLNR-EKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 165 ~---i~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
. ++..++.. ....+.......+.+.+.+ .+++||||||+|+...+..+ +.+++||+|||+..++
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~ 270 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVT 270 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHH
Confidence 3 34455421 1223455667777777754 25799999999987655433 4589999999999987
Q ss_pred hc
Q 037337 236 SR 237 (247)
Q Consensus 236 ~~ 237 (247)
..
T Consensus 271 ~~ 272 (591)
T 1z6t_A 271 DS 272 (591)
T ss_dssp TT
T ss_pred Hh
Confidence 63
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=4.7e-13 Score=115.99 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCcccccchHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHhccc---CCCC-EEEEEEeCCCCC
Q 037337 92 GYEAFESRMSTLNDILGAL-R----N--PDISMLGI--CGMGGIGKTMLEKEVARKAKNH---KLFD-LVVFSEMSQSPD 158 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L-~----~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~---~~f~-~~~wv~~~~~~~ 158 (247)
.|..|+||+.+++.|.+++ . . .....+.| +|++|+|||+|++.+++..... ..+. .++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4578999999999998888 3 2 24567778 9999999999999999887542 1123 368888877788
Q ss_pred HHHHHHHHHHHhCCCCC--CCChHHHHHHHHHHHc-CCCcEEEEEeCCCCccc--------hhhhcccCCC-C--C--CC
Q 037337 159 IRKVQGEIADKLGLTFR--EESESGRARSLFSRLN-REKRILVILDNIWEHLD--------LQVVGIPHGD-D--H--KG 222 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~~~--------~~~l~~~~~~-~--~--~~ 222 (247)
...++..++..++...+ ..+.......+.+.+. .+++++|||||++.... +..+...+.. . + .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 99999999999976533 2344555666777664 23689999999987421 2222121111 1 2 45
Q ss_pred eEEEEeeCchhh
Q 037337 223 CKVLFTARSLDV 234 (247)
Q Consensus 223 s~iiiTtR~~~v 234 (247)
..+|+||+..++
T Consensus 180 v~lI~~~~~~~~ 191 (412)
T 1w5s_A 180 IGFLLVASDVRA 191 (412)
T ss_dssp EEEEEEEEETHH
T ss_pred EEEEEEeccccH
Confidence 668889886654
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.45 E-value=1.6e-13 Score=116.25 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=92.2
Q ss_pred ccccCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC------CHH
Q 037337 87 LMSNKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP------DIR 160 (247)
Q Consensus 87 ~~~~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~ 160 (247)
|.++..+..|+||+.+++.|.+++..+ +.+.|+|++|+|||+|++.+++... .+|+++.... +..
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITRE 75 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHH
Confidence 345556778999999999999988754 7999999999999999999998741 6788776432 566
Q ss_pred HHHHHHHHHhCC-----------------CC--CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccc---------hhhh
Q 037337 161 KVQGEIADKLGL-----------------TF--REESESGRARSLFSRLNREKRILVILDNIWEHLD---------LQVV 212 (247)
Q Consensus 161 ~l~~~i~~~l~~-----------------~~--~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---------~~~l 212 (247)
.++..+...+.. .. ...+.......+.+.+...++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 777777665542 00 0123344444555544332379999999987542 1222
Q ss_pred cccCCCCCCCeEEEEeeCchhh
Q 037337 213 GIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 213 ~~~~~~~~~~s~iiiTtR~~~v 234 (247)
..+.+...+.++|+|++...+
T Consensus 156 -~~~~~~~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 156 -AYAYDSLPNLKIILTGSEVGL 176 (350)
T ss_dssp -HHHHHHCTTEEEEEEESSHHH
T ss_pred -HHHHHhcCCeEEEEECCcHHH
Confidence 111112257889999987654
No 7
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.4e-12 Score=111.76 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=99.8
Q ss_pred CCcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC-CCEEEEEEeCCCCCHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNHKL-FDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~l~~~i 166 (247)
.|..|+||+.+++.|.+++. ......+.|+|++|+|||||++.+++....... -..++|+++....+...++..+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999887 345678999999999999999999998765411 1257888887777788888888
Q ss_pred HHHhCCCCC--CCChHHHHHHHHHHHcC-CCcEEEEEeCCCCcc------chhhhcccCCC-CCCCeEEEEeeCchhhh
Q 037337 167 ADKLGLTFR--EESESGRARSLFSRLNR-EKRILVILDNIWEHL------DLQVVGIPHGD-DHKGCKVLFTARSLDVL 235 (247)
Q Consensus 167 ~~~l~~~~~--~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~------~~~~l~~~~~~-~~~~s~iiiTtR~~~va 235 (247)
+..++.... ..+.......+.+.+.. +++.+|+||+++... .+..+...+.. ...+..+|+||+..+..
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 887765432 22345556677777754 347999999997642 12222111111 23467788888877653
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=3.6e-12 Score=109.26 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=100.1
Q ss_pred CCcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQ 163 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~ 163 (247)
.|..++||+.+++.|..++. ......+.|+|++|+|||+||+.+++..... ..-...+|+++....+...++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 35789999999999999884 2456789999999999999999999887432 101247889999888999999
Q ss_pred HHHHHHhCCCCCC--CChHHHHHHHHHHHcC-CCcEEEEEeCCCCccc----hhhhcccC---CC-C-CCCeEEEEeeCc
Q 037337 164 GEIADKLGLTFRE--ESESGRARSLFSRLNR-EKRILVILDNIWEHLD----LQVVGIPH---GD-D-HKGCKVLFTARS 231 (247)
Q Consensus 164 ~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~----~~~l~~~~---~~-~-~~~s~iiiTtR~ 231 (247)
..++..++..... .+.......+.+.+.. +++.+|+|||++.... .+.+...+ .. . ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 9999999765332 3455666777777743 4578999999987532 12221111 11 1 446678888877
Q ss_pred hhh
Q 037337 232 LDV 234 (247)
Q Consensus 232 ~~v 234 (247)
.+.
T Consensus 177 ~~~ 179 (387)
T 2v1u_A 177 LGF 179 (387)
T ss_dssp STT
T ss_pred Cch
Confidence 643
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.4e-12 Score=110.50 Aligned_cols=139 Identities=15% Similarity=0.160 Sum_probs=98.3
Q ss_pred CcccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhccc-----CC-CCEEEEEEeCCCC-CHHH
Q 037337 93 YEAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNH-----KL-FDLVVFSEMSQSP-DIRK 161 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~-f~~~~wv~~~~~~-~~~~ 161 (247)
|..++||+.+++.|..++. ....+.+.|+|++|+|||+||+.+++..... .. ....+|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 4789999999999887664 3446789999999999999999999986432 01 2357888888777 8888
Q ss_pred HHHHHHHHh-CCCC--CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccc---hhh-hcccCCCCCCCeEEEEeeCchh
Q 037337 162 VQGEIADKL-GLTF--REESESGRARSLFSRLNREKRILVILDNIWEHLD---LQV-VGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 162 l~~~i~~~l-~~~~--~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---~~~-l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
++..++..+ +... ...+.......+.+.+...+ .+|+|||++.... .+. +...+... .+..+|+||+...
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 889988887 3322 22344566777888887644 4999999987532 222 21111111 6788999998764
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=1.2e-11 Score=106.31 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=101.8
Q ss_pred CCcccccchHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRN----PDIS--MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~----~~~~--~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
.|..++||+.+++.|..++.. .... .+.|+|++|+|||||++.+++...... -..++|+++....+...++..
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHH
Confidence 347799999999999888863 3334 899999999999999999999876541 135788898888888999999
Q ss_pred HHHHhCCCCC--CCChHHHHHHHHHHHc-CCCcEEEEEeCCCCc--cchhhhcccCCCC-C---CCeEEEEeeCchhhh
Q 037337 166 IADKLGLTFR--EESESGRARSLFSRLN-REKRILVILDNIWEH--LDLQVVGIPHGDD-H---KGCKVLFTARSLDVL 235 (247)
Q Consensus 166 i~~~l~~~~~--~~~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~--~~~~~l~~~~~~~-~---~~s~iiiTtR~~~va 235 (247)
++..++.... ..+.......+.+.+. .+++.+|+||+++.. ..+..+...+... . .+..+|++|+..++.
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9999876433 2345555666666663 235789999999875 2233332222111 1 477888888877543
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.36 E-value=2.2e-12 Score=109.37 Aligned_cols=138 Identities=13% Similarity=0.199 Sum_probs=85.6
Q ss_pred cccCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-----CCHHHH
Q 037337 88 MSNKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-----PDIRKV 162 (247)
Q Consensus 88 ~~~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~l 162 (247)
.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+++.... ..+|+++... .+...+
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHH
Confidence 444566789999999999999 765 69999999999999999999988642 2578887643 345555
Q ss_pred HHHHHHHhCC------------------CCCC-----CC---hHHHHHHHHHHHcC-C-CcEEEEEeCCCCcc-----ch
Q 037337 163 QGEIADKLGL------------------TFRE-----ES---ESGRARSLFSRLNR-E-KRILVILDNIWEHL-----DL 209 (247)
Q Consensus 163 ~~~i~~~l~~------------------~~~~-----~~---~~~~~~~l~~~l~~-~-kr~LlvlDdv~~~~-----~~ 209 (247)
+..+...+.. ..+. .. .......+.+.+.. . ++++|||||++... ++
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 5555443310 0000 00 01112334444422 1 37999999997642 22
Q ss_pred hhhcccCCCCCCCeEEEEeeCchhh
Q 037337 210 QVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 210 ~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
..+...+.+...+.++|+|++....
T Consensus 158 ~~~l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 158 LPALAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp HHHHHHHHHHCTTEEEEEEESSHHH
T ss_pred HHHHHHHHHcCCCeEEEEEcCchHH
Confidence 1111111122247889999998654
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=2.3e-11 Score=95.90 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL 170 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 170 (247)
.....++||+..++.|.+++.......+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567999999999999999876655699999999999999999998864432112345556555544433332222221
Q ss_pred CCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCchh
Q 037337 171 GLTFREESESGRARSLFSRLNREKRILVILDNIWEHL--DLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
.... ....++.+|+|||++... ....+...+.....++++|+||+...
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1100 012357999999998752 23334333333456788999887653
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.17 E-value=1.5e-10 Score=92.28 Aligned_cols=138 Identities=12% Similarity=0.137 Sum_probs=77.6
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|.....++||+.+++.|..++.... ...+.|+|++|+|||+||+.+++.......+.. ..+.. ... ...+.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~---~~~-~~~~~ 90 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGV---CDN-CREIE 90 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSC---SHH-HHHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcc---cHH-HHHHh
Confidence 34445679999999999999887543 458899999999999999999988754321100 00000 000 00000
Q ss_pred HHhC-----CCCCCCChHHHHHHHHHHHc----CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 168 DKLG-----LTFREESESGRARSLFSRLN----REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 168 ~~l~-----~~~~~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
.... ..............+.+.+. .+++.+|||||++.. ..+..+...+.....++.+|+||+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000 00000011112222333221 235699999999864 334444344434456788999987654
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=3.5e-10 Score=94.61 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=81.6
Q ss_pred cccccchHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC---C-C-EEEEEEeCCCCCHHHHHH
Q 037337 94 EAFESRMSTLNDILGALR----NPDISMLGICGMGGIGKTMLEKEVARKAKNHKL---F-D-LVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~-~~~wv~~~~~~~~~~l~~ 164 (247)
..+.||++|++.|...|. .+....+.|+|++|+|||++++.+++.+..... . . .++++++....+...++.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 347899999999887764 456788999999999999999999999864311 1 1 467889888889999999
Q ss_pred HHHHHhCCCC-CCCChHHHHHHHHHHH--cCCCcEEEEEeCCCCcc
Q 037337 165 EIADKLGLTF-REESESGRARSLFSRL--NREKRILVILDNIWEHL 207 (247)
Q Consensus 165 ~i~~~l~~~~-~~~~~~~~~~~l~~~l--~~~kr~LlvlDdv~~~~ 207 (247)
.|++++.... ...........+.+.+ ..+++++++||+++...
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 9999985331 1222233444444444 23457999999998864
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=1.2e-10 Score=97.48 Aligned_cols=129 Identities=18% Similarity=0.132 Sum_probs=80.1
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
|....+++|++..++.|.+++..+..+.+.++|++|+|||++|+.+++...........++++.+.......+ ..++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445779999999999999998766555999999999999999999998643311112455555544333222 222222
Q ss_pred hCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 170 LGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 170 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
+..... .+..+++.++|+||++.. .....+...+.....++++|+||+..
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 110000 000234789999999875 23334433333345678888888664
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.09 E-value=5.4e-10 Score=85.90 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=44.6
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.....++||+++++.+.+++.......+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999998776778899999999999999999998754
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=5e-10 Score=93.79 Aligned_cols=127 Identities=11% Similarity=0.085 Sum_probs=77.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
|....+++|++..++.|..++..+....+.++|++|+|||++|+.+++.......-...+.++++.......+ ......
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHH
Confidence 3345679999999999999988766556999999999999999999998643311112344444332111111 111111
Q ss_pred hCCCCCCCChHHHHHHHHHH--HcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 170 LGLTFREESESGRARSLFSR--LNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 170 l~~~~~~~~~~~~~~~l~~~--l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
.... +..+++.++++||++.. .....+...+.....++++|+||...+
T Consensus 100 ----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 100 ----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp ----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 0000 11135689999999875 233444333333456788888887643
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.93 E-value=2.7e-09 Score=88.94 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKL 170 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 170 (247)
....+++|++..++.|.+++..+....+.++|++|+|||++|+.+++.......-...+.++++.......
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--------- 84 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV--------- 84 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT---------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH---------
Confidence 34567999999999999998876655599999999999999999999864321111234455543221111
Q ss_pred CCCCCCCChHHHHHHHHHH--HcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 171 GLTFREESESGRARSLFSR--LNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~--l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
........... +..+++.++++|+++.. .....+...+.....++++|+||....
T Consensus 85 --------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 85 --------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp --------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred --------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 00111111111 11235689999999865 233445444444456788888886544
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.89 E-value=3.9e-09 Score=80.82 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.....++||+.+++.+.+++.......+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999998766778899999999999999999998744
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.80 E-value=1.3e-08 Score=83.80 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=61.3
Q ss_pred CCCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 91 KGYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
....+++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++..... .+.++++.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3457799999999998877632 345679999999999999999999876432 3344432211
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 158 DIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 158 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. . ...........+........+.+|+|||++..
T Consensus 89 ~--------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 89 K--------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAI 122 (285)
T ss_dssp C--------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHH
T ss_pred H--------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHh
Confidence 0 0 00111222333444443335689999999753
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=2.5e-08 Score=85.02 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
....+++||+..++.|..++..+. ...+.|+|++|+|||++|+.+++.....
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344679999999999999887553 4578899999999999999999987543
No 22
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.71 E-value=5.9e-08 Score=81.36 Aligned_cols=123 Identities=11% Similarity=0.078 Sum_probs=76.1
Q ss_pred ccCCCcccccchHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 89 SNKGYEAFESRMSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 89 ~~~~~~~~~gR~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.|....+++|++..++.|.+++.... ...+.++|++|+|||++|+.+++.... .+++++++... ... +..++
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~~~-i~~~~ 93 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-IDF-VRGPL 93 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-HHH-HHTHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccccC-HHH-HHHHH
Confidence 34456789999999999999998654 467778888999999999999988743 24566654422 222 22222
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc---chhhhcccCCCCCCCeEEEEeeCchh
Q 037337 168 DKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHL---DLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~---~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
..+..... ..+++.+|+|||++... ....+...+.....++++|+||....
T Consensus 94 ~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 94 TNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11100000 01256899999999764 22333222222234567888876543
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=2.2e-08 Score=84.66 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=77.2
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCC-CEEEEEEeCCCCCHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLF-DLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
|.....++|+++.++.|..++.......+.++|++|+|||++|+.+++.......+ ..+..++++.......+... ..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK-VK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH-HH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHH-HH
Confidence 34457799999999999999987654558999999999999999999886421001 12445555544343332222 22
Q ss_pred HhC-CCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCch
Q 037337 169 KLG-LTFREESESGRARSLFSRLNREKRILVILDNIWEHL--DLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 169 ~l~-~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
.+. ......... ........++-+|++|+++... ....+...+......+++|++|...
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 173 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYV 173 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCch
Confidence 211 111000000 0011112245799999987652 2233333332234467777777543
No 24
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.68 E-value=1.1e-08 Score=75.95 Aligned_cols=110 Identities=9% Similarity=0.063 Sum_probs=63.5
Q ss_pred ccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 037337 95 AFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGL 172 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 172 (247)
.++|+...+..+.+.+. ......|.|+|++|+|||++|+.+++...... .. .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~-~~-~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ-GE-FV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT-SC-CE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC-CC-EE-EECCCCCcc-------------
Confidence 47899999988888764 23335678999999999999999987643321 12 23 666543322
Q ss_pred CCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCcc--chhhhcccCCCCCCCeEEEEeeCc
Q 037337 173 TFREESESGRARSLFSRLNREKRILVILDNIWEHL--DLQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 173 ~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
.. ...+.+.. +.-.|+||+++... ....+...+.......++|.||..
T Consensus 66 ----~~----~~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----PQ----LNDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----SC----HHHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----hh----hhcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 00 11111111 22578999998652 122222222223345677777764
No 25
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.67 E-value=4.1e-08 Score=82.17 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCcccccchHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 91 KGYEAFESRMSTLNDILGALR-----NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~-----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
....+|+|++..+..+..++. ......+.|+|++|+|||+||+.+++..... .++++++....
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~ 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-----LRVTSGPAIEK 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC-----EEEECTTTCCS
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEeccccCC
Confidence 345779999999988887775 2334678899999999999999999876432 34566554433
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.66 E-value=2.7e-08 Score=82.77 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 95 AFESRMSTLNDILGALR---------------NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~---------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.++|.+...+.|.+.+. ......+.|+|++|+|||+||+.+++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58898888888776543 2344578999999999999999999887553
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.65 E-value=3e-07 Score=74.45 Aligned_cols=94 Identities=19% Similarity=0.202 Sum_probs=55.2
Q ss_pred CcccccchHHHHHHHHHh---cC---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH
Q 037337 93 YEAFESRMSTLNDILGAL---RN---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L---~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 160 (247)
..+++|.+...+.|.+.+ .. ...+.+.|+|++|+|||++|+.+++..... .+.++++...+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 456888888777765543 21 234668899999999999999999976532 345555432110
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 161 KVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 161 ~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. ..........+.+......+.+|+||+++..
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 0 0111122233333333334689999999864
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.63 E-value=1.2e-07 Score=79.70 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=61.3
Q ss_pred CCCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 91 KGYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
....+++|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++..... .+.++++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678999999999888762 1124679999999999999999999886433 3444432
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++... . ..........+.+.....++.+|+||+++..
T Consensus 86 --~l~~~--------~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 86 --DLVSK--------W-MGESEKLVKQLFAMARENKPSIIFIDQVDAL 122 (322)
T ss_dssp --HHHTT--------T-GGGHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred --HHhhc--------c-cchHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence 11100 0 0112233444444444445689999999854
No 29
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.60 E-value=2.2e-07 Score=75.93 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=35.1
Q ss_pred cccccchHHHHHHHH-------Hhc---CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 94 EAFESRMSTLNDILG-------ALR---NPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~-------~L~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..++|....++.+.. .+. ......+.|+|++|+|||+||+.+++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 456777666655554 332 34567899999999999999999999754
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.60 E-value=1.1e-06 Score=73.83 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 92 GYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
.-.++.|.+...+.|.+.+. ....+.+.++|++|+|||+||+.+++..... ..+.++++.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh-
Confidence 34678888888888776552 1234789999999999999999999986321 234455442211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
... .........+.+.....++.+|+||+++..
T Consensus 85 -------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 85 -------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp -------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred -------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 001 112333444444444345789999999865
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.59 E-value=3e-07 Score=80.64 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=44.0
Q ss_pred cCCCcccccchHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 90 NKGYEAFESRMSTL---NDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 90 ~~~~~~~~gR~~~~---~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|....+++|.+..+ ..|...+.......+.+||++|+||||||+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44567899999888 77888887776778999999999999999999988653
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.58 E-value=3.3e-07 Score=78.92 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 91 KGYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
....+++|.+..++.|.+++. ....+.+.|+|++|+|||+||+.+++.... ..+.++++.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 345679999999999988772 123478999999999999999999887543 234555443221
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. . . .........+.+........+|+||+++..
T Consensus 187 ~--~-------~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l 219 (389)
T 3vfd_A 187 K--Y-------V------GEGEKLVRALFAVARELQPSIIFIDQVDSL 219 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGG
T ss_pred c--c-------c------chHHHHHHHHHHHHHhcCCeEEEEECchhh
Confidence 0 0 0 011222333444433334589999999754
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.57 E-value=2.9e-07 Score=78.37 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 92 GYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
...+++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++++.-...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK 156 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc
Confidence 34668999999998887763 124578999999999999999999987642 2455555432110
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
. ..........+.......++.+|+||+++.
T Consensus 157 --------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~ 187 (357)
T 3d8b_A 157 --------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDS 187 (357)
T ss_dssp --------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHH
T ss_pred --------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchh
Confidence 0 011122233333333333568999999964
No 34
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.54 E-value=4.1e-07 Score=80.29 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=43.5
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+++||+.+++.+...+.......+.++|++|+|||++|+.+++....
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34679999999999999997766677889999999999999999998743
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.53 E-value=9.4e-08 Score=73.23 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 037337 99 RMSTLNDILGALRN---PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR 175 (247)
Q Consensus 99 R~~~~~~L~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 175 (247)
+...++.+.+++.+ .....+.|+|++|+|||||++.+++.......+. ++|+ +..++...+...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchH
Confidence 34445555555432 2347899999999999999999999876322222 3343 344555555444321111
Q ss_pred CCChHHHHHHHHHHHcCCCcEEEEEeCCCC--ccchh--hhcccCCC-CCCCeEEEEeeCch
Q 037337 176 EESESGRARSLFSRLNREKRILVILDNIWE--HLDLQ--VVGIPHGD-DHKGCKVLFTARSL 232 (247)
Q Consensus 176 ~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~--~~~~~--~l~~~~~~-~~~~s~iiiTtR~~ 232 (247)
. .+.+.+.. .-+|||||++. ...+. .+...+.. ...|..+|+||...
T Consensus 92 ----~----~~~~~~~~--~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 ----T----KFLKTVLN--SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp ----S----HHHHHHHT--CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred ----H----HHHHHhcC--CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 23333333 46899999984 22221 12111111 12466788888654
No 36
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=2.9e-07 Score=77.93 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=41.4
Q ss_pred cCCCcccccchHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 90 NKGYEAFESRMSTLNDILGAL-RNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
|....+++|++...+.|.+++ ..+....+.|+|++|+||||+++.++..+
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344567899999999999988 65544448999999999999999999965
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=2.8e-07 Score=77.87 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=72.7
Q ss_pred cCCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 037337 90 NKGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADK 169 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 169 (247)
|.....++|.+..++.|..++..++...+.++|++|+||||+|+.+++.......-..+..++.+.......+.. +...
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~ 99 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKD 99 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHH
Confidence 334566889999999999988877554589999999999999999999875431101133444443323322211 1111
Q ss_pred hCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 170 LGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 170 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
+..... .+.. .+-++|+|+++.. .....+...+......++++++|...
T Consensus 100 ~~~~~~-------------~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 100 FASTRQ-------------IFSK-GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp HHHBCC-------------SSSC-SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred HHhhcc-------------cCCC-CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 100000 0012 3578899998754 22233323222223466777776543
No 38
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.3e-07 Score=82.93 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=51.0
Q ss_pred cCCCcccccchHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 90 NKGYEAFESRMSTLNDILGALRN-----------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 90 ~~~~~~~~gR~~~~~~L~~~L~~-----------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
|....+++|++..++.|.+|+.. +..+.+.|+|++|+|||++|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44457899999999999999864 1347899999999999999999999873 2 355666
Q ss_pred eCCCCCHH
Q 037337 153 MSQSPDIR 160 (247)
Q Consensus 153 ~~~~~~~~ 160 (247)
++......
T Consensus 110 ~s~~~~~~ 117 (516)
T 1sxj_A 110 ASDVRSKT 117 (516)
T ss_dssp TTSCCCHH
T ss_pred CCCcchHH
Confidence 66655543
No 39
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.50 E-value=1.4e-07 Score=73.56 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=65.4
Q ss_pred Ccccccch----HHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 93 YEAFESRM----STLNDILGALRNP----DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 93 ~~~~~gR~----~~~~~L~~~L~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
...|++.. ..++.+..++... ....+.|+|++|+|||+||+.+++..... ...++|+++. ++..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFR 95 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHH
Confidence 34455433 3445555555432 12789999999999999999999987654 2345666543 4444
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhh--hcc-cCCCC-CCCeEEEEeeCc
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH--LDLQV--VGI-PHGDD-HKGCKVLFTARS 231 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~--l~~-~~~~~-~~~s~iiiTtR~ 231 (247)
.+...+.. ... ..+.+.+.. .-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 96 ~~~~~~~~----~~~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQD----QTM----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC-------CCC----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcc----chH----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 44332211 111 222333333 248999999653 22211 211 11111 235568888874
No 40
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.49 E-value=3.5e-07 Score=86.44 Aligned_cols=102 Identities=13% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC-----CCEEEEEEeCCCCCHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKL-----FDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~l~~~i 166 (247)
...+++||+.++..+...+.......+.++|++|+|||+||+.+++....... -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 35679999999999999998766667889999999999999999998743210 12344554432110
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHcC-CCcEEEEEeCCCCc
Q 037337 167 ADKLGLTFREESESGRARSLFSRLNR-EKRILVILDNIWEH 206 (247)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~ 206 (247)
+.. ...........+.+.+.. .++.+|+||+++..
T Consensus 240 ----g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l 275 (854)
T 1qvr_A 240 ----GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTV 275 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred ----cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHH
Confidence 000 011223334444444433 35689999999865
No 41
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.49 E-value=2.1e-06 Score=80.06 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=66.6
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCC----CCEEEE-EEeCCCCCHHHHHHHH
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKL----FDLVVF-SEMSQSPDIRKVQGEI 166 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w-v~~~~~~~~~~l~~~i 166 (247)
...+++||+.+++.+.+.|.......+.|+|++|+|||++|+.++........ ..+.+| ++++..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 35679999999999999998776778899999999999999999998743211 123333 222111
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 167 ADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+.........+.....+.+.+...++.+|++|+++..
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 0001111233344455555554445689999999865
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=1.3e-06 Score=72.13 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=61.2
Q ss_pred CCcccccchHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 92 GYEAFESRMSTLNDILGALRN------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
...+++|.+..++.|.+++.. .....+.|+|++|+|||+||+.+++..... .+.++++....
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh-
Confidence 446799999999998887631 235789999999999999999999876422 34455543211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. ...........+.......++.+|+||+++..
T Consensus 93 -------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 93 -------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp -------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred -------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 0 01122233333444443335689999999754
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.46 E-value=1.4e-06 Score=76.30 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=39.2
Q ss_pred CCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 92 GYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...+++|.+...+.|.+.+. ....+.+.|+|++|+|||+||+.+++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999998888887662 1234789999999999999999999986
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.42 E-value=6.4e-07 Score=78.41 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=69.7
Q ss_pred Ccccc-cchH--HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 93 YEAFE-SRMS--TLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 93 ~~~~~-gR~~--~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
...|+ |... ....+........ ...+.|+|++|+||||||+.+++.......-..++|+++. .+...+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 34566 5333 3334444444433 6789999999999999999999987544111235666543 33444444
Q ss_pred HhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCccc----hhhhcccCCC-CCCCeEEEEeeCc
Q 037337 169 KLGLTFREESESGRARSLFSRLNREKRILVILDNIWEHLD----LQVVGIPHGD-DHKGCKVLFTARS 231 (247)
Q Consensus 169 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~----~~~l~~~~~~-~~~~s~iiiTtR~ 231 (247)
.+... . ...+.+.+.. +..+|+|||++.... .+.+...+.. ...|..||+||.+
T Consensus 178 ~~~~~----~----~~~~~~~~~~-~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 178 SMKEG----K----LNEFREKYRK-KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHTT----C----HHHHHHHHTT-TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHcc----c----HHHHHHHhcC-CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 44221 1 1233344442 357999999976532 2222222211 2346788898876
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.40 E-value=7.1e-06 Score=69.69 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=39.4
Q ss_pred CcccccchHHHHH---HHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 93 YEAFESRMSTLND---ILGALRNPDI--SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 93 ~~~~~gR~~~~~~---L~~~L~~~~~--~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...|+|++...+. +...+..... ..+.|+|++|+|||+||+.+++.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5679999988766 4555554433 589999999999999999999988643
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.39 E-value=2.5e-06 Score=72.58 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=59.4
Q ss_pred CCcccccchHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 92 GYEAFESRMSTLNDILGALR------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
...+++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++..... .+.++++
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 44678999998888887662 1123568899999999999999999987532 3334322
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
++.. .... ........+.......++.+|+||+++..
T Consensus 119 -~l~~--------~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 119 -DLVS--------KWMG-ESEKLVKQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp -HHHS--------CC----CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred -HHhh--------hhcc-hHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 1111 0001 11233344444443335689999999864
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.38 E-value=8.6e-08 Score=70.83 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 94 EAFESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..++|+...++++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578888888888777642 233568899999999999999987643
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.38 E-value=6.6e-07 Score=74.98 Aligned_cols=113 Identities=16% Similarity=0.094 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCh
Q 037337 102 TLNDILGALRNP--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESE 179 (247)
Q Consensus 102 ~~~~L~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 179 (247)
....+..+...+ ....+.|+|++|+||||||+.+++..... -..++++++. ++...+...+.. ..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~----~~- 88 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKK----GT- 88 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHH----TC-
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHc----Cc-
Confidence 334455555443 34678999999999999999999987543 1235566543 333333333321 01
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCccc----hhhhcccCCC-CCCCeEEEEeeCch
Q 037337 180 SGRARSLFSRLNREKRILVILDNIWEHLD----LQVVGIPHGD-DHKGCKVLFTARSL 232 (247)
Q Consensus 180 ~~~~~~l~~~l~~~kr~LlvlDdv~~~~~----~~~l~~~~~~-~~~~s~iiiTtR~~ 232 (247)
...+.+.+.. ..+|+|||++.... ...+...+.. ...+..+|+||.+.
T Consensus 89 ---~~~~~~~~~~--~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 89 ---INEFRNMYKS--VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp ---HHHHHHHHHT--CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ---HHHHHHHhcC--CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 1222333333 47999999976531 1222222211 12356788888643
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=1.6e-06 Score=72.95 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCcccccchHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGALRN-----PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+++|++..++.+..++.. .....+.|+|++|+|||+||+.+++...
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3457799999999998888752 3456789999999999999999988754
No 50
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=2.4e-06 Score=71.09 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc--CCCCEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 037337 98 SRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH--KLFDLVVFSEMSQ-SPDIRKVQGEIADKLGLTF 174 (247)
Q Consensus 98 gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~ 174 (247)
|-++.++.|.+.+..++.....++|++|+|||++|..+++..... .+.+ ..+++.+. ...++.+ +.+...+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 345566777787776667788999999999999999999863211 1233 35555543 3343332 33444443221
Q ss_pred CCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 175 REESESGRARSLFSRLNREKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 175 ~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
. .+++-++|+|+++.. ...+.+...+......+.+|++|.+.
T Consensus 79 ~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 79 E----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp S----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 1 124678999999875 33445544444445678888877554
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.32 E-value=2.4e-06 Score=79.70 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=43.3
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+++||+.+++.+...+......-+.++|++|+|||++|+.+++...
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999876667789999999999999999999873
No 52
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.29 E-value=5e-06 Score=70.06 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 100 MSTLNDILGALRNPD-ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 100 ~~~~~~L~~~L~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
++..+.|...+..++ ...+.++|++|+|||++|+.+++.+..
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 556677777776654 467899999999999999999998754
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.29 E-value=3.8e-07 Score=75.75 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=61.5
Q ss_pred ccccchHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 95 AFESRMSTLNDILGALRNP---------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~---- 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA---- 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH----
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc----
Confidence 4678888888877766421 13579999999999999999999987543 12356666664433211
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 166 IADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 166 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
....++.......... ...+.+.+......+|+||+++..
T Consensus 92 ~~~l~g~~~~~~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEE-GGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp HHHHHCCCTTSTTTTT-CCHHHHHHHHCSSEEEEEETGGGS
T ss_pred HHHhcCCCCccccccc-cchHHHHHHhCCCeEEEEeChhhc
Confidence 1122332211111000 012333443334479999999865
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=7.6e-06 Score=71.17 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=60.1
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++.++.|.+.+. -..++-+.+||++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4567788887777766542 1245789999999999999999999987754 34454433221
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. ...........+........+++|++|+++..
T Consensus 254 -------------k-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai 286 (437)
T 4b4t_L 254 -------------K-YIGESARIIREMFAYAKEHEPCIIFMDEVDAI 286 (437)
T ss_dssp -------------S-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSS
T ss_pred -------------c-cchHHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 0 00111223334444443446799999999854
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.25 E-value=4.6e-06 Score=69.19 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=58.6
Q ss_pred CCcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 92 GYEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
...+++|.+..++.|.+++.. .....+.|+|++|+|||+||+.+++..... .+.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~v~------ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIK------ 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEEEC------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEEEE------
Confidence 345688988888887766531 345679999999999999999999876422 23332
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
..++.... ++.. ......+.+......+.+|+||+++.
T Consensus 82 ~~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 82 GPELLTMW---FGES------EANVREIFDKARQAAPCVLFFDELDS 119 (301)
T ss_dssp HHHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECSTTH
T ss_pred hHHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEEChHH
Confidence 22332221 2211 11223333333333569999999984
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=5.8e-06 Score=70.99 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=60.1
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++..+.|.+.+. -..++-+.++||+|+|||.||+.+++..... .+.++.+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc-
Confidence 4567788888877766542 1235778999999999999999999987754 24444332211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. .....+..+..+.+......+++|++|+++..
T Consensus 221 -------------k-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai 253 (405)
T 4b4t_J 221 -------------K-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSI 253 (405)
T ss_dssp -------------S-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCC
T ss_pred -------------c-ccchHHHHHHHHHHHHHHhCCceEeeecchhh
Confidence 0 00112233344444444446799999999854
No 57
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.21 E-value=6.8e-07 Score=72.70 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=41.0
Q ss_pred cccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 94 EAFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
..++|+...+..+.+.+. ......+.|+|++|+|||+||+.+++..... -...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 457899888888776553 1233678899999999999999999875432 123466776654
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5.9e-06 Score=71.82 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 92 GYEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
...++.|-++..+.|.+.+. . ..++-|.+|||+|+|||.||+.+++..... .+.++.+.-.+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~~ 253 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLVQ 253 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhhh
Confidence 35678888888888776542 1 236789999999999999999999987754 23444332111
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 159 IRKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 159 ~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.. ....+.....+........+++|++|+++.
T Consensus 254 --------------~~-vGese~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 254 --------------MY-IGEGAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp --------------SC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred --------------cc-cchHHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 00 011122333344333333579999999874
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.19 E-value=8.4e-07 Score=72.18 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=36.8
Q ss_pred CCcccccchHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 92 GYEAFESRMSTLNDILGALR---N---------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~---~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+++|.+...+.|.+.+. . .....+.|+|++|+|||+||+.+++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34668888877776665443 1 12345789999999999999999998754
No 60
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.1e-05 Score=69.93 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=59.2
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++..+.|.+.+. . ...+-+.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence 4567888888887766543 1 235779999999999999999999987654 34454433211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
......+..+..+........+++|++|+++.
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 00011122333444444334579999999863
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.16 E-value=1e-05 Score=65.40 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=36.8
Q ss_pred CCCcccccchHHHHHHHHH---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGA---LRN---------PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~---L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+++|.+...+.|.+. +.. ....-+.|+|++|+||||||+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3456788988777666543 322 1245688999999999999999998764
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.15 E-value=1.3e-05 Score=70.87 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=39.2
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.+..++.|.+++. ......+.|+|++|+|||+||+.+++...
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 4568999999998887764 23456799999999999999999988763
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.6e-05 Score=69.34 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=60.3
Q ss_pred CcccccchHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR-------------NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++..+.|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 4568888888888766542 1346889999999999999999999987754 24444332111
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.. ....+..+..+........+++|++|+++..
T Consensus 282 -------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 314 (467)
T 4b4t_H 282 -------------KY-VGEGARMVRELFEMARTKKACIIFFDEIDAV 314 (467)
T ss_dssp -------------CS-SSHHHHHHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred -------------cc-CCHHHHHHHHHHHHHHhcCCceEeecccccc
Confidence 00 0111223344444444446799999999854
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.13 E-value=8.9e-06 Score=71.65 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=55.7
Q ss_pred CCcccccchHHHHHHHHH---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 92 GYEAFESRMSTLNDILGA---LRNP---------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~---L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
...+++|.++.+++|.+. +... ..+-+.|+|++|+|||+||+.++...... .+.++++.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 345688888776666544 3221 23568899999999999999999976533 244554432210
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.. .........+.+......+.+|+||+++.
T Consensus 89 --------------~~-g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 --------------FV-GVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp --------------CT-THHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred --------------Hh-cccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 00 00111222333333333579999999965
No 65
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.5e-05 Score=68.88 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=59.3
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++..+.|.+.+. . ...+-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~s- 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELIQ- 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGCC-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhhh-
Confidence 4567788887777766542 1 235789999999999999999999987754 23343322110
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
. .....+..+..+........+++|++|+++..
T Consensus 255 -------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai 287 (437)
T 4b4t_I 255 -------------K-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAI 287 (437)
T ss_dssp -------------S-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSS
T ss_pred -------------c-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhh
Confidence 0 01112233344444444445799999999853
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.12 E-value=5.7e-06 Score=65.61 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCcccccc---hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 92 GYEAFESR---MSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 92 ~~~~~~gR---~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
...+|+|+ +..++.+..+........+.|+|++|+|||+||+.+++..... ...+.|++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 34567763 3566667776666566889999999999999999999987654 23466776643
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.11 E-value=5.6e-06 Score=61.46 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
....++|+|+.|+|||||++.++...... .+ .++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45789999999999999999999987643 12 256666543
No 68
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.09 E-value=1.8e-06 Score=71.88 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=42.9
Q ss_pred cccccchHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 94 EAFESRMSTLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
..++|+...+..+.+.+.. .....|.|+|++|+|||++|+.+++...... ...+.++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD--RPLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS--SCCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC--CCeEEEeCCCC
Confidence 3578998888888776642 3346788999999999999999988653221 12345666654
No 69
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.09 E-value=3.9e-06 Score=69.38 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=42.8
Q ss_pred cccccchHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 94 EAFESRMSTLNDILGALRN--------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..++|++..++.|...+.. .....+.++|++|+|||++|+.+++..... .+.++++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~-----~~~i~~~~ 85 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP-----FIKVEATK 85 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEEcchh
Confidence 4588999998888776643 234678899999999999999999987432 34555543
No 70
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.99 E-value=1.7e-05 Score=62.52 Aligned_cols=113 Identities=9% Similarity=0.132 Sum_probs=62.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------------
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------------------- 175 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------------------- 175 (247)
..+++|.|++|+|||||++.++...... -..+.|++... ....+...+ ..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999999766543 12466766543 344444333 23432211
Q ss_pred -----CCChHHHHHHHHHHHcCCC--cEEEEEeCCCCcc--c---hhhhcccCC--CCCCCeEEEEeeCch
Q 037337 176 -----EESESGRARSLFSRLNREK--RILVILDNIWEHL--D---LQVVGIPHG--DDHKGCKVLFTARSL 232 (247)
Q Consensus 176 -----~~~~~~~~~~l~~~l~~~k--r~LlvlDdv~~~~--~---~~~l~~~~~--~~~~~s~iiiTtR~~ 232 (247)
..+..+....+...+...+ ..+||+|+..... + ...+...+. ....|+.||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 1133444444444442212 3499999987432 1 112211111 123478899998876
No 71
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.95 E-value=8.3e-05 Score=59.08 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=57.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------CCCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK----LFDLVVFSEMSQSPDIRKVQGEIADKLGLTF----------REESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----------~~~~~~ 180 (247)
..++.|+|++|+|||||+..++....... .-..++|++.........+ ..++..++... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 47999999999999999999998633210 1256889987775555443 33445555432 111222
Q ss_pred H---HHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 181 G---RARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 181 ~---~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+ ....+.+.+...+.-+||||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 2 2334555554446789999998754
No 72
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.93 E-value=9.2e-05 Score=61.48 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=58.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLFSRL 190 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~~l 190 (247)
++.|+|++|+|||||+.+++........-..++|++....++.. -++.++.+.+. .+.++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68999999999999999998876543112458899888777653 26778766442 23333313333443
Q ss_pred ---cCCCcEEEEEeCCCCc
Q 037337 191 ---NREKRILVILDNIWEH 206 (247)
Q Consensus 191 ---~~~kr~LlvlDdv~~~ 206 (247)
...+.-+||+|.+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 5556789999998755
No 73
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.93 E-value=6.2e-05 Score=63.79 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=57.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
-.++.|+|++|+|||||+..++...... -..++|++.....+.. .++.++.... ..+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4799999999999999999999887654 2347888877766644 4566665432 1234444444444
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 444445578999997643
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.93 E-value=1.9e-05 Score=65.21 Aligned_cols=29 Identities=34% Similarity=0.318 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+..+.++|++|+|||+||+.+++.....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35688899999999999999999988543
No 75
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.91 E-value=3.4e-05 Score=67.71 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=38.0
Q ss_pred CcccccchHHHHHHHHH---hcCC--CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGA---LRNP--DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~---L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+++|.++..+.+..+ +... ..+.+.++|++|+|||+||+.+++....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 47799999887765443 3333 2367899999999999999999998764
No 76
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.90 E-value=6.7e-05 Score=58.66 Aligned_cols=85 Identities=19% Similarity=0.176 Sum_probs=52.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCC-----------C-CCC-ChHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLT-----------F-REE-SESG 181 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~-----------~-~~~-~~~~ 181 (247)
..++.|+|++|+|||||+..++. . . -..++|++.....+...+.. ++..++.. . ... ....
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 47899999999999999999998 2 1 24688888777556555433 33333221 0 111 1122
Q ss_pred HHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 182 RARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 182 ~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
....+...+.. +.-+||||.+...
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 33334344434 4689999998765
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.88 E-value=6.3e-06 Score=76.93 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=43.9
Q ss_pred cccccchHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 94 EAFESRMSTLNDILGALRN-------P--DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~-------~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..++|.+..++.+...+.. . ....+.++|++|+|||++|+.+++..... -...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 4588999988888776641 1 12368999999999999999999987433 23356676654
No 78
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.86 E-value=2.7e-05 Score=64.83 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEe
Q 037337 99 RMSTLNDILGALRNP---DISMLGICGMGGIGKTMLEKEVARKAK-NHKLFDLVVFSEM 153 (247)
Q Consensus 99 R~~~~~~L~~~L~~~---~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~ 153 (247)
+...+..+.+++... ....+.|+|++|+|||+||..+++... ... + .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-V-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-C-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-C-cEEEEEH
Confidence 334445555665531 247889999999999999999999876 442 2 3555554
No 79
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.85 E-value=3.8e-05 Score=63.96 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM--SQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
+.+.|+|++|+|||+||..++.. .. ..++|+++ ....+ . ...+.......+.+.+...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G----~~VlyIs~~~eE~v~-------------~--~~~~le~~l~~i~~~l~~~ 183 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LG----GKDKYATVRFGEPLS-------------G--YNTDFNVFVDDIARAMLQH 183 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HH----TTSCCEEEEBSCSST-------------T--CBCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CC----CCEEEEEecchhhhh-------------h--hhcCHHHHHHHHHHHHhhC
Confidence 56789999999999999999987 21 12456666 22211 0 0134455556666777653
Q ss_pred CcEEEEEeCCCCc
Q 037337 194 KRILVILDNIWEH 206 (247)
Q Consensus 194 kr~LlvlDdv~~~ 206 (247)
+ +||+|++...
T Consensus 184 -~-LLVIDsI~aL 194 (331)
T 2vhj_A 184 -R-VIVIDSLKNV 194 (331)
T ss_dssp -S-EEEEECCTTT
T ss_pred -C-EEEEeccccc
Confidence 4 9999998754
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.84 E-value=3e-05 Score=72.22 Aligned_cols=94 Identities=14% Similarity=0.239 Sum_probs=58.0
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++.++.|.+.+. . ..++-|.++|++|+|||+||+.+++..... .++++++.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 3456777777776665532 1 235789999999999999999999876543 34454321
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+. + . .....+..+..+.+......+++|+||+++..
T Consensus 274 --l~-------s-k-~~gese~~lr~lF~~A~~~~PsIIfIDEiDal 309 (806)
T 3cf2_A 274 --IM-------S-K-LAGESESNLRKAFEEAEKNAPAIIFIDELDAI 309 (806)
T ss_dssp --HH-------S-S-CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGT
T ss_pred --hh-------c-c-cchHHHHHHHHHHHHHHHcCCeEEEEehhccc
Confidence 10 0 0 01112233444444444446799999999754
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.83 E-value=0.00011 Score=62.24 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=56.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 188 (247)
..++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++...+. .+..+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999999876543 2357899887766543 25556644321 233333443433
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.....+.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 444445679999998654
No 82
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.82 E-value=0.00013 Score=62.12 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=57.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
..++.|+|++|+|||+||..++...... -..++|++....++.. .+..++.+.+ ..+.+.....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4689999999999999999998876543 2368899988766543 2455655422 1234444444444
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.+...+.-+||+|.+...
T Consensus 147 l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHTTTCCSEEEEECTTTC
T ss_pred HHhcCCCCEEEEeChHHh
Confidence 444444578999998643
No 83
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.81 E-value=0.00012 Score=61.76 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK----LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
..++.|+|++|+|||+||..++....... .-..++|++....++...+. .++..++.... ..+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHH
Confidence 47899999999999999999998743311 12468999988877766654 34455554321 11111
Q ss_pred ---HHHHHHHHHHcC--CCcEEEEEeCCCCc
Q 037337 181 ---GRARSLFSRLNR--EKRILVILDNIWEH 206 (247)
Q Consensus 181 ---~~~~~l~~~l~~--~kr~LlvlDdv~~~ 206 (247)
.....+...+.. .+.-+||+|.+...
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 233344455543 45679999998643
No 84
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.79 E-value=1e-05 Score=76.44 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=43.6
Q ss_pred cccccchHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 94 EAFESRMSTLNDILGALRNP---------DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~ 627 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEY 627 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTC
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhc
Confidence 35789999888887766421 12578999999999999999999987432 122456666544
No 85
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.79 E-value=0.00019 Score=64.36 Aligned_cols=48 Identities=27% Similarity=0.326 Sum_probs=34.8
Q ss_pred cccccchHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALR------NPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+++|-+...+.+.+.+. .-....+.++|++|+||||||+.++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346776666666544332 223568999999999999999999998743
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.73 E-value=1.7e-05 Score=62.81 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=64.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE---ESESGRARSLFSRLN 191 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~ 191 (247)
..++.++|+.|+||||++..++++...+. . .++.+....... ....++..++...+. .+..+..+.+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 47889999999999999999999887652 2 344444333221 122344445543222 122333333333333
Q ss_pred CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 192 REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 192 ~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
.++.-+|++|++... +.++.+.. +.+ .|..||+|-+..+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred CCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 334459999999754 23333322 211 27889999996655
No 87
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.72 E-value=0.00017 Score=61.17 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~~ 188 (247)
..++.|+|.+|+||||||.+++...... -..++|++.....+.. .+..++...+. .+.......+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4789999999999999999999876544 2358899887766643 24556544321 123333333333
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.....+.-+||+|.+...
T Consensus 136 l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHTCCSEEEEECGGGC
T ss_pred HHhccCCCEEEEcCHHHh
Confidence 333334568999997543
No 88
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.71 E-value=0.00014 Score=60.67 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=58.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc------------CCC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH------------KLF--DLVVFSEMSQSPDIRKVQGEIADKLGLTFR----- 175 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~------------~~f--~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----- 175 (247)
..++.|+|++|+|||+||..++...... ... ..++|++....++..++.. ++..++.+.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4789999999999999999999864211 101 3688999888777666553 3455654321
Q ss_pred -----CCChH---HHHHHHHHHHcC-CCcEEEEEeCCCC
Q 037337 176 -----EESES---GRARSLFSRLNR-EKRILVILDNIWE 205 (247)
Q Consensus 176 -----~~~~~---~~~~~l~~~l~~-~kr~LlvlDdv~~ 205 (247)
..+.+ .....+.+.+.. .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 11222 234455555554 4567999999864
No 89
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.71 E-value=0.00012 Score=59.74 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=32.4
Q ss_pred CcccccchHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 93 YEAFESRMSTLNDILGALR----N---------PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~----~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..++.|-++..+.|.+.+. . .-.+-+.|+|++|+||||||+.++....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4556676766666655432 1 1123499999999999999999998754
No 90
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.71 E-value=3.2e-05 Score=72.09 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=59.7
Q ss_pred cccccchHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH
Q 037337 94 EAFESRMSTLNDILGALRN---------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG 164 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 164 (247)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 4588998888887776541 1234789999999999999999998873 2345666654322100
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 165 EIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 165 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
+.+.++.+.. .........+.+.+......+|+||+++..
T Consensus 530 -~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0011121111 100011112334443334589999999865
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.70 E-value=2.7e-05 Score=62.23 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=27.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEeC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK-NHKLFDLVVFSEMS 154 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~ 154 (247)
..+++|.|+.|+|||||++.++.... .. -...+|+...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 37999999999999999999984322 22 2345565543
No 92
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.70 E-value=0.00028 Score=59.01 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK----LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
..++.|+|++|+|||+||..++....... .-..++|++....++...+. .++..++.... ..+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 47899999999999999999998753221 02468999888877666654 34556654321 11222
Q ss_pred ---HHHHHHHHHHcC-CCcEEEEEeCCCCc
Q 037337 181 ---GRARSLFSRLNR-EKRILVILDNIWEH 206 (247)
Q Consensus 181 ---~~~~~l~~~l~~-~kr~LlvlDdv~~~ 206 (247)
.....+...+.. .+.-+||+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 234455555543 45689999998643
No 93
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.67 E-value=0.00064 Score=56.59 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.++.+..-+.. ..++.|.|.+|+||||||.+++.....+. ..++|++.. .+..++...+.
T Consensus 57 ~LD~~lgGl~~--G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~ 116 (315)
T 3bh0_A 57 ELDRMTYGYKR--RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLI 116 (315)
T ss_dssp HHHHHHSSBCT--TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHH
T ss_pred HHHhhcCCCCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHH
Confidence 44554433333 37899999999999999999998765542 568888765 34444444443
No 94
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.65 E-value=0.0004 Score=51.87 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEV 135 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~ 135 (247)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 95
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.62 E-value=9.4e-05 Score=61.90 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=45.1
Q ss_pred cccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 94 EAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+++..... ...+++.......+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~-----~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLD-----FHRIQFTPDLLPSD 87 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCC-----EEEEECCTTCCHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCC-----eEEEecCCCCChhh
Confidence 45789999998888877654 468899999999999999999876432 23455554444443
No 96
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.61 E-value=0.00019 Score=61.85 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=56.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~~ 180 (247)
-.++.|+|++|+|||||+..++-..... ..-..++|++....+....+ ..+++.++.... ..+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4799999999999999999887543321 01346889887776655543 346666664321 11121
Q ss_pred ---HHHHHHHHHHcCCCcEEEEEeCCCC
Q 037337 181 ---GRARSLFSRLNREKRILVILDNIWE 205 (247)
Q Consensus 181 ---~~~~~l~~~l~~~kr~LlvlDdv~~ 205 (247)
.....+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2233444444444678999999754
No 97
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=5e-05 Score=71.26 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=38.3
Q ss_pred CcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 93 YEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.+..++.|.+++.. .....+.|+|++|+||||||+.++....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 45688988888888776641 2346799999999999999999988654
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.56 E-value=0.00044 Score=54.32 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCh-
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH---K-LFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EESE- 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~-~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~- 179 (247)
-.+++|+|++|+|||||++.++...... . .....+|++......... +..++..++.... ....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3799999999999999999998854331 1 134578887655444333 3344444443211 0111
Q ss_pred --HHHHHHHHHHHc-----CCCcEEEEEeCCCCc
Q 037337 180 --SGRARSLFSRLN-----REKRILVILDNIWEH 206 (247)
Q Consensus 180 --~~~~~~l~~~l~-----~~kr~LlvlDdv~~~ 206 (247)
......+.+.+. ..+.-+|+||+....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 112334444444 446789999998653
No 99
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.55 E-value=6.6e-05 Score=63.12 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=39.5
Q ss_pred CCCcccccchHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 91 KGYEAFESRMSTLNDILGALRN-----PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.....++|.+..++.+...+.. .....+.++|++|+||||||+.++.....
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3446688988888777666542 23467899999999999999999998753
No 100
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00058 Score=54.18 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..++.|.|++|+|||||+.+++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 3689999999999999999988766433 23577877554
No 101
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.50 E-value=0.00045 Score=61.18 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=36.3
Q ss_pred CCCcccccchHHHHHHHHH---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGA---LRNP---------DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~---L~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+++|.++....+.+. +... -.+-+.|+|++|+|||+||+.++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788988776665443 3221 134589999999999999999998765
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.44 E-value=0.00087 Score=55.31 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=30.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+..+++++|++|+||||++..++..+..... ..+.++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCc
Confidence 4579999999999999999999988764211 2355565543
No 103
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.40 E-value=9e-05 Score=62.27 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.7
Q ss_pred CCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 92 GYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....++|.+.....+...+.......+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899888666654444333334589999999999999999998764
No 104
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=0.0002 Score=55.49 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=34.4
Q ss_pred chHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 99 RMSTLNDILGALRN---PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 99 R~~~~~~L~~~L~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
|++.++.|.+.+.. ....+++|.|++|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56677777776653 34579999999999999999999987754
No 105
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.36 E-value=0.00084 Score=51.79 Aligned_cols=116 Identities=17% Similarity=0.065 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC---CCCHHHHHHHHHH---HhCC--CCCCCC-------h
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ---SPDIRKVQGEIAD---KLGL--TFREES-------E 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~l~~~i~~---~l~~--~~~~~~-------~ 179 (247)
...|.|++..|.||||.|.-.+-+...+. + .+.++..-. .....+++..+.- .++. ...... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35666777777999999999998877653 3 344443332 2233344443310 0011 111111 1
Q ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCc-----cchhhhcccCCCCCCCeEEEEeeCch
Q 037337 180 SGRARSLFSRLNREKRILVILDNIWEH-----LDLQVVGIPHGDDHKGCKVLFTARSL 232 (247)
Q Consensus 180 ~~~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~~~~~~~~s~iiiTtR~~ 232 (247)
........+.+.+++-=|||||++-.. ...+.+...+........||+|+|+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 122344555665555579999998432 23333333343455677899999986
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.35 E-value=1.2e-05 Score=61.85 Aligned_cols=110 Identities=18% Similarity=0.041 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
.++.++|+.|+||||++..++++....+ . .+.++....+. ......+...++........ .....+.+.+.. +.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~~-~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVI-ERPEEMRKYIEE-DT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCCT-TE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEE-CCHHHHHHHhcC-CC
Confidence 5788999999999999988888775442 2 23333322111 00000011111111100000 001122222332 34
Q ss_pred EEEEEeCCCCc-cchhhhcccCCCCCCCeEEEEeeCchh
Q 037337 196 ILVILDNIWEH-LDLQVVGIPHGDDHKGCKVLFTARSLD 233 (247)
Q Consensus 196 ~LlvlDdv~~~-~~~~~l~~~~~~~~~~s~iiiTtR~~~ 233 (247)
-+|++|+++.. .+|......+.+ .+..|++|.+..+
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDLT 114 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESBC
T ss_pred CEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeeccc
Confidence 69999999765 233332222212 2778999888554
No 107
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.34 E-value=0.012 Score=51.51 Aligned_cols=60 Identities=10% Similarity=0.235 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
.++.+..-+..+ .++.|.|.+|+|||||+..++....... -..++|++... +..++...+
T Consensus 192 ~LD~~~gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred HHHhhcCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 455555334333 6899999999999999999998876431 12477776544 334444443
No 108
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.0022 Score=55.73 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
++.+|.++|++|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999887754
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.31 E-value=0.00059 Score=57.68 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc---CCC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCC--
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH---KLF-DLVVFSEMSQSPDIRKVQGEIADKLGLTFR----------EES-- 178 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~~f-~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~-- 178 (247)
-.++.|+|++|+|||||+..++...... ... ..++|++....+.... +..++..++.... ..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~ 209 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 209 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChH
Confidence 4899999999999999999999876321 011 2358888766544333 2334444433210 011
Q ss_pred -hHHHHHHHHHHHcC-----CCcEEEEEeCCCCc
Q 037337 179 -ESGRARSLFSRLNR-----EKRILVILDNIWEH 206 (247)
Q Consensus 179 -~~~~~~~l~~~l~~-----~kr~LlvlDdv~~~ 206 (247)
.......+...+.. .+.-+||+|.+...
T Consensus 210 ~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 210 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 11223333344432 35789999998765
No 110
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.30 E-value=0.0023 Score=53.69 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
..++.+..-+..+ .++.|.|.+|+||||||..++...... -..++|++... +..++...+
T Consensus 34 ~~LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEm--s~~ql~~Rl 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEM--SAEQLALRA 93 (338)
T ss_dssp HHHHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSS--CHHHHHHHH
T ss_pred hHHHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCC--CHHHHHHHH
Confidence 3445544333333 689999999999999999999887653 24577776543 444554444
No 111
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.30 E-value=0.00034 Score=58.27 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=33.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
++.++|+|+|-||+||||.+.+++..+.... ..+.-+++..+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dpq 87 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 87 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 3579999999999999999999999887653 24777777754
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.29 E-value=0.0027 Score=55.08 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
+..++.++|++|+||||++..++..+.... ..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecC
Confidence 367999999999999999999998887542 234445443
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=0.00032 Score=54.69 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 101 STLNDILGALRN--PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 101 ~~~~~L~~~L~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+.++.|.+.+.. +...+++|.|++|+|||||++.++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455566666553 34679999999999999999999988764
No 114
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.28 E-value=0.00091 Score=67.75 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLF 187 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 187 (247)
..+.+.|+|++|+|||+||..++...... -..++|+++....+... ++.++.+.+. .+.+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 34899999999999999999998876644 23577888777666544 5566643221 12334444444
Q ss_pred HHHcCCCcEEEEEeCCC
Q 037337 188 SRLNREKRILVILDNIW 204 (247)
Q Consensus 188 ~~l~~~kr~LlvlDdv~ 204 (247)
...+..+.-+||+|++.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44444467899999985
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.28 E-value=6.2e-05 Score=63.89 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=61.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL-VVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
...++|.|+.|+|||||.+.+....... ... ++.+.-......... ..+..+... ..........+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~-~~~v~q~~~---~~~~~~~~~~La~aL~~- 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESK-KCLVNQREV---HRDTLGFSEALRSALRE- 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEB---TTTBSCHHHHHHHHTTS-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhcc-ccceeeeee---ccccCCHHHHHHHHhhh-
Confidence 3599999999999999999998876543 122 222211111100000 000000000 01112233466666766
Q ss_pred CcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhhh
Q 037337 194 KRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVLS 236 (247)
Q Consensus 194 kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va~ 236 (247)
++=+|++|+..+.+.++.+... ...|..|++|+...+.+.
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHHH
T ss_pred CcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHHH
Confidence 4678899999876555443222 233666999998887753
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.27 E-value=0.00017 Score=54.42 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.26 E-value=0.00013 Score=64.59 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=38.3
Q ss_pred cccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++|++..++.+...+..+ ..+.++|++|+|||+||+.+++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 34789999998888877655 57889999999999999999987643
No 118
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.00026 Score=66.00 Aligned_cols=94 Identities=16% Similarity=0.254 Sum_probs=59.1
Q ss_pred CcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 93 YEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++.|-++..+.|.+.+.- ...+-+.++|++|+|||.||+.+++..... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----c
Confidence 45566777777776655431 124568899999999999999999987643 23332 1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCcEEEEEeCCCCc
Q 037337 160 RKVQGEIADKLGLTFREESESGRARSLFSRLNREKRILVILDNIWEH 206 (247)
Q Consensus 160 ~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 206 (247)
.+++ ..+-..+ +..+..+.+..+...+++|+||+++..
T Consensus 545 ~~l~--------s~~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 PELL--------TMWFGES-EANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HHHH--------TTTCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred chhh--------ccccchH-HHHHHHHHHHHHHcCCceeechhhhHH
Confidence 1211 1111122 344566666665556799999999753
No 119
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00021 Score=53.50 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|.|++|+||||+++.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.21 E-value=0.0023 Score=53.07 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCCC----CCCChHHH-HHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD-IRKVQGEIADKLGLTF----REESESGR-ARSLF 187 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~~----~~~~~~~~-~~~l~ 187 (247)
...++.|+|++|+||||++..++..+... -..+.++....... ..+-+...++..+.+. ...++... ...+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35789999999999999999999988654 22355565543211 1122233444544321 12223222 22344
Q ss_pred HHHcCCCcEEEEEeCCCC
Q 037337 188 SRLNREKRILVILDNIWE 205 (247)
Q Consensus 188 ~~l~~~kr~LlvlDdv~~ 205 (247)
..+.. +.-++|+|..-.
T Consensus 181 ~a~~~-~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALAR-NKDVVIIDTAGR 197 (306)
T ss_dssp HHHHT-TCSEEEEEECCC
T ss_pred HHHhc-CCCEEEEECCCc
Confidence 43444 234778887643
No 121
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.20 E-value=0.0047 Score=50.92 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
..+++++|.+|+||||++..++..+.... ..+.+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 56899999999999999999998876542 2355665543
No 122
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.18 E-value=0.0032 Score=54.74 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=30.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+.++|.++|.+|+||||++..++..+...... .+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 35789999999999999999999988764112 355565554
No 123
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.17 E-value=0.001 Score=58.17 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChHH------
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGL-------TFREESESG------ 181 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~~------ 181 (247)
..++|+|.+|+|||||+..++.....+. .+..+++.++... ...+++..+...-.. .....++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4688999999999999999998766542 2345677776654 344555545432100 011111111
Q ss_pred HHHHHHHHHc--CCCcEEEEEeCCCC
Q 037337 182 RARSLFSRLN--REKRILVILDNIWE 205 (247)
Q Consensus 182 ~~~~l~~~l~--~~kr~LlvlDdv~~ 205 (247)
..-.+.+++. .++++||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1124455553 46889999999853
No 124
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00051 Score=58.24 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 95 AFESRMSTLNDILGALR-------------N--PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~-------------~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.++|.+..++.|...+. . .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36888888888877662 1 1346789999999999999999998874
No 125
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.12 E-value=0.0009 Score=53.62 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCcccccchHHHHHHHH---HhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 92 GYEAFESRMSTLNDILG---ALRN---------PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 92 ~~~~~~gR~~~~~~L~~---~L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+++|.+.....+.+ .+.. .-.+-+.|+|++|+|||||++.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567887765555433 3321 1123489999999999999999998765
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.00032 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|+|++|+||||+|+.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36789999999999999999998764
No 127
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.12 E-value=0.0014 Score=65.53 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=57.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
..++.|+|++|+||||||.+++...... -..++|++........ . ++.++.+.+ ..+..+....+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4799999999999999999999887654 2357888776665532 2 566664322 2244444455544
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 443345679999998754
No 128
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.12 E-value=0.0029 Score=55.17 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
.++++..-+.. ..++.|.|.+|+|||+||.+++.....+ -..++|++....
T Consensus 186 ~LD~~lgGl~~--G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 186 ELDRMTYGYKR--RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp HHHHHHSSBCS--SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred HHHhhcCCCCC--CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 44444433332 3789999999999999999999887654 235778766543
No 129
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00035 Score=53.97 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
No 130
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.11 E-value=0.00064 Score=57.88 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998773
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.11 E-value=0.004 Score=54.28 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
.++.+..-+.. ..++.|.|.+|+|||+||..++....... -..++|++... +..++...++
T Consensus 189 ~LD~~lgGl~~--G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE~--~~~~l~~R~~ 249 (444)
T 2q6t_A 189 ELDQLIGTLGP--GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLEM--PAAQLTLRMM 249 (444)
T ss_dssp HHHHHHCCCCT--TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSS--CHHHHHHHHH
T ss_pred hhhhhcCCcCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECCC--CHHHHHHHHH
Confidence 34444432332 36899999999999999999998865431 13477776643 4455555543
No 132
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.10 E-value=0.0089 Score=52.91 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+..+|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999877643
No 133
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.10 E-value=0.00032 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.09 E-value=0.0004 Score=53.72 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=25.6
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.....+++|.|++|+|||||++.++..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34558999999999999999999999876
No 135
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.0004 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
....+++|.|++|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999999876
No 136
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00041 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00036 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..|+|.|++|+||||+|+.++..+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987643
No 138
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00046 Score=52.62 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...+|.|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999987654
No 139
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00031 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998754
No 140
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.06 E-value=0.0038 Score=51.40 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=49.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH-HHHHHHHHHhCCCCC----CCChHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR-KVQGEIADKLGLTFR----EESESGRARSLFS 188 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~l~~~i~~~l~~~~~----~~~~~~~~~~l~~ 188 (247)
...+++++|.+|+||||++..++..+.... ..+.++......... ..+..+....+...- ..++.+......+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999999876542 235556554332211 122334444443321 2233344333333
Q ss_pred HHc-CCCcEEEEEeCC
Q 037337 189 RLN-REKRILVILDNI 203 (247)
Q Consensus 189 ~l~-~~kr~LlvlDdv 203 (247)
.+. . +.=++|+|.-
T Consensus 175 ~~~~~-~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLE-ARDLILVDTA 189 (295)
T ss_dssp HHHHH-TCCEEEEECC
T ss_pred HHHhC-CCCEEEEeCC
Confidence 332 3 2356778875
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.05 E-value=0.00041 Score=52.80 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..|+|.|++|+||||+++.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999998764
No 142
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.04 E-value=0.00062 Score=53.38 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+..+.+...+.......|+|+|.+|+|||||+..++.....
T Consensus 24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 33444555444455688999999999999999999987643
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.02 E-value=0.00039 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|++|+||||+|+.++..+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00044 Score=52.37 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|+|++|+||||+++.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 36788999999999999999998764
No 145
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.00 E-value=0.001 Score=54.96 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
....++|+|+|-||+||||+|..++..+...+ ..+..+++....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 34568899999999999999999999887652 246777776543
No 146
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.99 E-value=0.0048 Score=54.63 Aligned_cols=49 Identities=6% Similarity=0.063 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEI 166 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 166 (247)
..++.|.|.+|+|||+||.+++....... -..++|++... +..++...+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~ 290 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDL 290 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHH
Confidence 36889999999999999999998876431 12477776644 344555544
No 147
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.99 E-value=0.00045 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999988653
No 148
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.98 E-value=0.00048 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00053 Score=52.30 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999988754
No 150
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.98 E-value=0.0029 Score=64.24 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=57.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCChHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFR------EESESGRARSLFS 188 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~~l~~ 188 (247)
..++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+.+ ..+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4799999999999999999999887654 2358888887776643 2566665432 2234444444444
Q ss_pred HHcCCCcEEEEEeCCCCc
Q 037337 189 RLNREKRILVILDNIWEH 206 (247)
Q Consensus 189 ~l~~~kr~LlvlDdv~~~ 206 (247)
.....+.-+||+|.+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 333345579999998643
No 151
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.0058 Score=52.93 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
...++.++|++|+||||++..++..+.... ..+.++.+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeecc
Confidence 356899999999999999999999887542 235555543
No 152
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.00057 Score=52.30 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 153
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.96 E-value=0.00082 Score=57.32 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=49.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCCCCHHHHHHHHHHHhC----CCCCCCChHH------HH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH-KLFDLVVFSEMSQSPDIRKVQGEIADKLG----LTFREESESG------RA 183 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~l~~~i~~~l~----~~~~~~~~~~------~~ 183 (247)
-..++|+|++|+|||||++.+++..... ..+. ++++-++...... .++.+.+. ....+.+... ..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev---~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHH---HHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHH---HHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4688999999999999999998875432 2233 4467677553221 12222221 0111112211 11
Q ss_pred HHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 184 RSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 184 ~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
-.+.+++ ..++.+||++||+...
T Consensus 250 lt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCchHH
Confidence 2233444 3467899999998643
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.96 E-value=0.0015 Score=53.13 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=35.0
Q ss_pred CCCcccccchHHHHHHHHH---hcC---------CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 91 KGYEAFESRMSTLNDILGA---LRN---------PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~---L~~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+++|.++....+.+. +.. .-.+-+.|+|++|+|||||++.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 3456788887766555433 221 1123489999999999999999998765
No 155
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.96 E-value=0.0019 Score=49.38 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.|+|.|+.|+||||+++.+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999987543
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.0027 Score=50.30 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=31.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGE 165 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 165 (247)
..++.|.|.+|+|||+||.+++....... -..++|++... +...+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHH
Confidence 47899999999999999999876532221 23466666543 34444444
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00051 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999998765
No 158
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.93 E-value=0.0006 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|+|.|++|+||||+++.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999988753
No 159
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.92 E-value=0.0005 Score=53.32 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999998763
No 160
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.92 E-value=0.00059 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 161
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.92 E-value=0.0008 Score=52.31 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHhcCC-CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 103 LNDILGALRNP-DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 103 ~~~L~~~L~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+..|..++..- +...+.++|++|+|||++|..+++.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44555555432 2357999999999999999999998753
No 162
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.91 E-value=0.00069 Score=52.45 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..|+|.|++|+||||+|+.++..+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999987654
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00078 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
...|+|+|++|+||||+++.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999986
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.00065 Score=52.09 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 165
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.90 E-value=0.00073 Score=52.15 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...+|+|.|++|+||||+++.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999765
No 166
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.90 E-value=0.0008 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 167
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.89 E-value=0.00061 Score=53.07 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+++|.|++|+|||||++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 347899999999999999999998764
No 168
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.0007 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...|+|.|++|+||||+++.++..+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999987653
No 169
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.89 E-value=0.00056 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.|+|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987643
No 170
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.89 E-value=0.0007 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.89 E-value=0.00055 Score=51.97 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998765
No 172
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.88 E-value=0.0007 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|+|.|++|+||||+++.++..+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999998764
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.88 E-value=0.0012 Score=59.94 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCCcccccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 91 KGYEAFESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 91 ~~~~~~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 34467899999998888877766 688999999999999999999976543
No 174
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.0012 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...++.|.|++|+||||+|+.++...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
No 175
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.87 E-value=0.00088 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998764
No 176
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.86 E-value=0.017 Score=48.18 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+..+++|+|+.|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999887654
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.86 E-value=0.0008 Score=52.75 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998764
No 178
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.00083 Score=52.44 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 100 MSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 100 ~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
++..+.+...+.......++|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444444444568999999999999999999998764
No 179
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.85 E-value=0.0016 Score=53.60 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+..+|+|.|++|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34678999999999999999999887764
No 180
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.85 E-value=0.0085 Score=52.39 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------------CCCCChH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIADKLGLT-------------FREESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------------~~~~~~~ 180 (247)
-..++|.|.+|+|||+|+.++++..... +.+..+|+-++... .+.+++..+...-... ..+.+..
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 3678999999999999999999876432 24567788887664 3456666666542221 1111211
Q ss_pred ------HHHHHHHHHHc--CCCcEEEEEeCCCC
Q 037337 181 ------GRARSLFSRLN--REKRILVILDNIWE 205 (247)
Q Consensus 181 ------~~~~~l~~~l~--~~kr~LlvlDdv~~ 205 (247)
...-.+.+++. .++.+||++||+..
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 12234556663 46889999999853
No 181
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.85 E-value=0.00066 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 182
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00052 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999988765
No 183
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.83 E-value=0.005 Score=54.01 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=59.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC-HHHHHHHHHHHhCCC--------------CCCCCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD-IRKVQGEIADKLGLT--------------FREESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~~l~~~--------------~~~~~~ 179 (247)
-..++|.|.+|+|||+|+.++++..... +.+..+|+-++.... ..+++..+...-... ..+.+.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 4678999999999999999999986432 246778888887653 556666665432121 011111
Q ss_pred ------HHHHHHHHHHHcC--CCcEEEEEeCCCC
Q 037337 180 ------SGRARSLFSRLNR--EKRILVILDNIWE 205 (247)
Q Consensus 180 ------~~~~~~l~~~l~~--~kr~LlvlDdv~~ 205 (247)
....-.+.+++.. ++.+||++||+..
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1223456677754 6889999999853
No 184
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.83 E-value=0.004 Score=48.09 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------ChHHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREE------SESGRARSLFSRL 190 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~------~~~~~~~~l~~~l 190 (247)
.|++-|.-|+||||.++.+++.++..+ . .+++..-.......+....++..-....... +..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988763 2 3444444444444555555543322110000 0112234455556
Q ss_pred cCCCcEEEEEeCCC
Q 037337 191 NREKRILVILDNIW 204 (247)
Q Consensus 191 ~~~kr~LlvlDdv~ 204 (247)
..+ ..+|.|-..
T Consensus 80 ~~g--~~Vi~DRy~ 91 (197)
T 3hjn_A 80 SEG--YAVLLDRYT 91 (197)
T ss_dssp TTT--CEEEEESCH
T ss_pred HCC--CeEEecccc
Confidence 654 467778653
No 185
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.83 E-value=0.00079 Score=51.90 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998864
No 186
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.82 E-value=0.00084 Score=53.91 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999998754
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.81 E-value=0.00081 Score=52.77 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.81 E-value=0.00089 Score=51.91 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL 147 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 147 (247)
...|+|.|++|+||||+++.++..+... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999987653 3454
No 189
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.81 E-value=0.00094 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.++|.|.|++|+||+|.|..++..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999999998764
No 190
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.80 E-value=0.00068 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 191
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.80 E-value=0.00088 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998865
No 192
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00094 Score=53.35 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|++|+|||||++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999997764
No 193
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.79 E-value=0.00096 Score=51.80 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL 147 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 147 (247)
...|+|.|++|+||||+++.++..+... +++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999987654 3444
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.79 E-value=0.00095 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998765
No 195
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.78 E-value=0.00094 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.|+|.|++|+||||+++.++..+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998753
No 196
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.0019 Score=51.57 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....|+|.|++|+||||+|+.+++.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998763
No 197
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.76 E-value=0.0026 Score=55.76 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 100 MSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 100 ~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+.+..+..++.+.+ ..+.|.|.+|+|||+++..++..+...
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 334444555555443 489999999999999999999988665
No 198
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.76 E-value=0.001 Score=57.90 Aligned_cols=48 Identities=23% Similarity=0.291 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 94 EAFESRMSTLNDILGALRN--------------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 94 ~~~~gR~~~~~~L~~~L~~--------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++|.++..+.|...+.. ...+-+.++|++|+|||++|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4578888877777655521 12456899999999999999999998754
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.76 E-value=0.001 Score=50.65 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999988753
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.76 E-value=0.00097 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.75 E-value=0.0019 Score=54.53 Aligned_cols=42 Identities=19% Similarity=0.288 Sum_probs=30.0
Q ss_pred hHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 100 MSTLNDILGAL----RNPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 100 ~~~~~~L~~~L----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+...+.+++.+ ..+....+.|+|++|+||||+++.++..+..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34444444444 3444567999999999999999999887643
No 202
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.75 E-value=0.00091 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 203
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.75 E-value=0.0011 Score=51.44 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+..+++|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998765
No 204
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.72 E-value=0.0011 Score=53.59 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...|.|.|++|+||||+|+.++..+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999988653
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.72 E-value=0.00097 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+|+.++..+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999998753
No 206
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.72 E-value=0.001 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36789999999999999999998765
No 207
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.71 E-value=0.0011 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
+..+|+|.|+.|+||||+++.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 208
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.70 E-value=0.00096 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999988653
No 209
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.70 E-value=0.0011 Score=51.23 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999997654
No 210
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.69 E-value=0.0011 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 211
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.68 E-value=0.0011 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
..|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0011 Score=51.00 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.65 E-value=0.0019 Score=48.67 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..++.|.|+.|+|||||+..+...+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5789999999999999999999987654
No 214
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.63 E-value=0.0054 Score=51.85 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 103 LNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 103 ~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...++..+. ..+..+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344454443 3456899999999999999999999877543
No 215
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.62 E-value=0.0035 Score=52.87 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=33.5
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCEEEEEEeCCCC
Q 037337 110 LRNPDISMLGICGMGGIGKTMLEKEVARKAK--NHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 110 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~ 157 (247)
+.....+++.+.|.||+||||+|..++..+. .. -..+..+++....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~ 60 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAH 60 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSC
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCC
Confidence 3455568999999999999999999998876 43 2235556555443
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.0017 Score=52.14 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
....+.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.60 E-value=0.0025 Score=52.73 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+..+++|+|++|+|||||+..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877643
No 218
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0013 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.58 E-value=0.0021 Score=50.04 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998876
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.00072 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 221
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.56 E-value=0.0011 Score=49.87 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEV 135 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~ 135 (247)
..+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999953
No 222
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.56 E-value=0.0038 Score=52.37 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=35.9
Q ss_pred hcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 110 LRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 110 L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
+.....+++.+.|.||+||||+|..++..+... -..+..+++....+...
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 334556888999999999999999999887654 23466666665444333
No 223
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.56 E-value=0.0035 Score=57.35 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 101 STLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 101 ~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
.+.+.+...|... ....|+||||+|||+.+..+...+-.. ...+.++...+..++++...|..
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHh
Confidence 4445566666544 477899999999997666665554333 23577777777777777777643
No 224
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.55 E-value=0.0016 Score=50.46 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+|+|+|++|+||||+++.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 225
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.53 E-value=0.0016 Score=52.30 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+|+|.|+.|+||||+++.++..+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999996653
No 226
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.52 E-value=0.002 Score=48.62 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+|+|.|+.|+||||+++.++..+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999987644
No 227
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.52 E-value=0.0083 Score=60.17 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CChHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE------ESESGRARSLF 187 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~l~ 187 (247)
+-++|-|+|+.|+||||||.++....+.. -...+|+++....+..- ++.+|.+.+. .+.+..+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 35899999999999999999999876654 34578888877666543 7788876543 23344455555
Q ss_pred HHHcCCCcEEEEEeCCCC
Q 037337 188 SRLNREKRILVILDNIWE 205 (247)
Q Consensus 188 ~~l~~~kr~LlvlDdv~~ 205 (247)
..++.+..-+||+|.|..
T Consensus 1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHcCCCCEEEEccHHh
Confidence 555666678999999753
No 228
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.50 E-value=0.0019 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|.|.|++|+||+|.|..++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578899999999999999998764
No 229
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.50 E-value=0.0018 Score=49.83 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...+|+|+|+.|+||||+++.+...+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998864
No 230
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.50 E-value=0.0018 Score=50.68 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998874
No 231
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.50 E-value=0.0019 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.49 E-value=0.0017 Score=50.37 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|.|+.|+|||||++.++.-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3789999999999999999998865
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.49 E-value=0.0065 Score=49.75 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
-.+++|.|++|+|||||+..++........ ..++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCc
Confidence 378999999999999999999988765411 136666543
No 234
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0018 Score=50.42 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 235
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.49 E-value=0.0039 Score=51.79 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
....+++|.|+.|+|||||++.++.-+.....-..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999999877643111235555443
No 236
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.48 E-value=0.0031 Score=52.61 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+++|.|+.|+|||||++.+...+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999887653
No 237
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.48 E-value=0.0035 Score=50.70 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 102 TLNDILGALRNP--DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 102 ~~~~L~~~L~~~--~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-...+..|+... +...+.++|++|+|||.+|..+++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 334467777654 25679999999999999999999863
No 238
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.47 E-value=0.0022 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998865
No 239
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.47 E-value=0.0017 Score=51.01 Aligned_cols=25 Identities=40% Similarity=0.584 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 240
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.46 E-value=0.0041 Score=52.04 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
..++|+|+.|+|||||++.++...... .+.+.+.-......... -+.++.-.. ........+...|.. ++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e~~~~~~----~~~i~~~~g--gg~~~r~~la~aL~~-~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEEIVFKHH----KNYTQLFFG--GNITSADCLKSCLRM-RP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCCCCCSSC----SSEEEEECB--TTBCHHHHHHHHTTS-CC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeeccccccc----hhEEEEEeC--CChhHHHHHHHHhhh-CC
Confidence 589999999999999999998776532 34555542221110000 000000000 112233445555655 45
Q ss_pred EEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 196 ILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 196 ~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
-+|++|+..+.+.++.+ ..+.. + +..+|+||...+..
T Consensus 242 ~ilildE~~~~e~~~~l-~~~~~-g-~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFY-NVLCS-G-HKGTLTTLHAGSSE 278 (330)
T ss_dssp SEEEECCCCSTHHHHHH-HHHHT-T-CCCEEEEEECSSHH
T ss_pred CEEEEcCCChHHHHHHH-HHHhc-C-CCEEEEEEcccHHH
Confidence 78899999875444434 22211 1 22367777766643
No 241
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.46 E-value=0.0022 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|++|+||||+|+.++..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998865
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.45 E-value=0.0038 Score=52.07 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
+..+++|+|++|+||||++..++..+.... ..+.++.+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 357899999999999999999998876542 235555544
No 243
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.0014 Score=49.55 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
.+++|+|+.|+|||||+..+...+.....-.+.+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 5789999999999999999998877542223455543
No 244
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.44 E-value=0.0019 Score=49.79 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=21.5
Q ss_pred chHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 99 RMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 99 R~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
+....+.+.+.....+.-.|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3444444444444445567899999999999999999865
No 245
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.43 E-value=0.0071 Score=48.12 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSE 152 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 152 (247)
...|++.|+.|+||||++..++..+... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988765 355344443
No 246
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.43 E-value=0.0022 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998765
No 247
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.41 E-value=0.017 Score=45.76 Aligned_cols=41 Identities=17% Similarity=-0.002 Sum_probs=29.1
Q ss_pred cccchHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 96 FESRMSTLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+.-|+.+.+.+..++... -+.|+|+.|.|||.+|..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 344555555555555433 37889999999999999888765
No 248
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.39 E-value=0.0024 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998764
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.38 E-value=0.0024 Score=50.26 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|+.|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 47899999999999999999988764
No 250
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.36 E-value=0.026 Score=43.61 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=51.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHH-HHHHHhCCCCCCC------------ChH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQG-EIADKLGLTFREE------------SES 180 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~-~i~~~l~~~~~~~------------~~~ 180 (247)
+..+|+|+|++|+||+++|..+.+.+... ...++ .+.+.++ ..+...+.+.+.. ...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~---~~~vv-------~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~ 79 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD---VCAVL-------RLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMI 79 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT---TEEEE-------CTHHHHHHHHHHTTTCCCC-------CCSSHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC---CceEE-------EccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHH
Confidence 45799999999999999999987755311 11111 3444444 3455555443221 111
Q ss_pred HHHHHHHHH---------HcCCCcEEEEEeCCCCccchhhhccc
Q 037337 181 GRARSLFSR---------LNREKRILVILDNIWEHLDLQVVGIP 215 (247)
Q Consensus 181 ~~~~~l~~~---------l~~~kr~LlvlDdv~~~~~~~~l~~~ 215 (247)
.....+++. +..-..-.+|+||+.+..+.+.+...
T Consensus 80 ~~g~~~R~~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~ 123 (202)
T 3ch4_B 80 RWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREA 123 (202)
T ss_dssp HHHHHHHHHCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHh
Confidence 112222221 11111237899999999887777543
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.36 E-value=0.0064 Score=47.96 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
-.|.+.|.||+||||+|..++......+ ++ +.++.+....+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~q~~~ 48 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVETHGRA 48 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCCTTCH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCCCCCh
Confidence 4588899999999999999999887653 33 455556554443
No 252
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.36 E-value=0.0082 Score=46.96 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
..|++.|+.|+||||+++.++..+.... +..+.+..-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 5899999999999999999999987653 433344433333334455555544
No 253
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.35 E-value=0.0027 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 254
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.35 E-value=0.0022 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999998765
No 255
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.35 E-value=0.0056 Score=49.29 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
++|+|.|-||+||||+|..++..+...+ ..+..+++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCCC
Confidence 4677889999999999999999887542 246777776543
No 256
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.34 E-value=0.032 Score=49.15 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...+++|+|+.|+|||||++.++..+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 35799999999999999999999887643
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.32 E-value=0.0057 Score=49.43 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=56.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHH--HHhCCCCCCCChHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIA--DKLGLTFREESESGRARSLFSRL 190 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~--~~l~~~~~~~~~~~~~~~l~~~l 190 (247)
...+++|+|+.|+|||||++.++...... +.+.+++.-... .-.... ..+. ..++.. .......+...|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~-----~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED-----TKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT-----BSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC-----HHHHHHHHHHHH
Confidence 34789999999999999999998876543 233333321110 000000 0000 000100 112234455555
Q ss_pred cCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 191 NREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 191 ~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
.. ++-+|++|+..+.+........ ...|.-|++||.+.+++
T Consensus 96 ~~-~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 96 RE-DPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTAI 136 (261)
T ss_dssp HH-CCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSHH
T ss_pred hh-CCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchHH
Confidence 44 3467888988754433222121 12356688888776643
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.32 E-value=0.0049 Score=46.67 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
..+++|.|+.|+|||||+..+...+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 4789999999999999999999886543
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.31 E-value=0.0027 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999999876
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.31 E-value=0.0024 Score=49.09 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3688999999999999999998765
No 261
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0044 Score=51.22 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+++|+|+.|+||||+++.++..+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999988764
No 262
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.29 E-value=0.0016 Score=53.50 Aligned_cols=27 Identities=11% Similarity=0.361 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+..+|+|.|+.|+||||+|+.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998654
No 263
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.29 E-value=0.005 Score=54.56 Aligned_cols=47 Identities=4% Similarity=-0.123 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 95 AFESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 95 ~~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....|.+..+.|.+... .+...+|.+.|++|+||||+|+.++..+..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34455555666666552 234578999999999999999999999874
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.29 E-value=0.0026 Score=53.34 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 265
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.29 E-value=0.016 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+.+.|+.|+||||+.....-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 68899999999999876655443
No 266
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.29 E-value=0.0027 Score=51.87 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 267
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.29 E-value=0.011 Score=46.25 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCE
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDL 147 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 147 (247)
...|++.|+.|+||||++..++..+... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3689999999999999999999988765 2444
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.28 E-value=0.0026 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|+|+.|+||||||..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 269
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=96.27 E-value=0.0049 Score=43.27 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=35.4
Q ss_pred HHHHHhhHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHH
Q 037337 9 VIEVGKCLAPSTERQFSYVRDYTSNFENLNTQVEKLEG 46 (247)
Q Consensus 9 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~ 46 (247)
+++++++|.+.+.+++.++.+++++++.|+++|+.|++
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a 40 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNA 40 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999998
No 270
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.25 E-value=0.0052 Score=48.63 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=32.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHH
Q 037337 118 LGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIR 160 (247)
Q Consensus 118 v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 160 (247)
|+|.|-||+||||+|..++..+...+ ..+..+++....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChH
Confidence 56699999999999999999987653 357778887765543
No 271
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.24 E-value=0.0071 Score=48.37 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999998877
No 272
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.23 E-value=0.006 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...|+|.|++|+||||+++.++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999998875
No 273
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.23 E-value=0.0019 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVA-RKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 139 (247)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 274
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.21 E-value=0.003 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|+.|+|||+||..++....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36889999999999999999998653
No 275
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=96.20 E-value=0.0098 Score=51.71 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccC-CCC-EEEEEEeCCCC-CHHHHHHHHHHH--hC-----CCCCCCChH-----
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHK-LFD-LVVFSEMSQSP-DIRKVQGEIADK--LG-----LTFREESES----- 180 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~f~-~~~wv~~~~~~-~~~~l~~~i~~~--l~-----~~~~~~~~~----- 180 (247)
..++|.|.+|+|||+|+.++++...... +-+ ..+|+-++... .+.++...+... +. ....+.+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 4568899999999999999998766421 112 46777777543 455666665443 11 111122221
Q ss_pred -HHHHHHHHHHc--CCCcEEEEEeCCCC
Q 037337 181 -GRARSLFSRLN--REKRILVILDNIWE 205 (247)
Q Consensus 181 -~~~~~l~~~l~--~~kr~LlvlDdv~~ 205 (247)
...-.+.+++. .++.+||++||+..
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 12235667775 36889999999853
No 276
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.20 E-value=0.0025 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+...+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999998754
No 277
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.20 E-value=0.0068 Score=49.47 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
++|+|.|-||+||||+|..++..+...+ ..+..+++....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q~ 42 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCCC
Confidence 5778899999999999999999887542 246677776543
No 278
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.19 E-value=0.0032 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.+|.|.|++|+||||+|+.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 279
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.16 E-value=0.0026 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|+|.|+.|+|||||+..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999997653
No 280
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.16 E-value=0.0038 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999876
No 281
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.15 E-value=0.0041 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|+.|+|||+||..++....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999998753
No 282
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.14 E-value=0.0057 Score=51.77 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+++|+|+.|+||||+++.++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999988764
No 283
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.12 E-value=0.0042 Score=51.43 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+++|.|+.|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999998765
No 284
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.08 E-value=0.0082 Score=46.03 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.7
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHH
Q 037337 116 SMLGIC-GMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRK 161 (247)
Q Consensus 116 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 161 (247)
++|+|+ +-||+||||+|..++..+...+ ..+..+++....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCCHHH
Confidence 467776 7899999999999999887642 3477788776654433
No 285
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.08 E-value=0.015 Score=60.79 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=49.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNREKR 195 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 195 (247)
+-+.++|++|+|||++|+.+...... + ..+.++++...+...+...+...+......... +..--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~---~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------~~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL---Y-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------TLLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS---C-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------EEEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC---C-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------cccCCCCCce
Confidence 67889999999999999887765321 2 356678888877777666655544321100000 0000003467
Q ss_pred EEEEEeCCCC
Q 037337 196 ILVILDNIWE 205 (247)
Q Consensus 196 ~LlvlDdv~~ 205 (247)
.++.+||+.-
T Consensus 1338 ~VlFiDEinm 1347 (2695)
T 4akg_A 1338 LVLFCDEINL 1347 (2695)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccccc
Confidence 8888999754
No 286
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.07 E-value=0.0084 Score=47.27 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=35.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhcc-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAKN-HKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
......|++.|+.|+||||+++.+.+.+.. .. ++......-.......+.++.++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g-~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG-VNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-GGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC-ceeeEeeeCCCCChHHHHHHHHHh
Confidence 334678999999999999999999998876 42 333332322233333444444444
No 287
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.05 E-value=0.013 Score=49.40 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc--ccCCCCEEEEEEeCCCCC
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAK--NHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~~~~~~ 158 (247)
.....++...|-||+||||+|..++..+. ..+ ..+.-+++....+
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~~~ 61 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPAHN 61 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCC
Confidence 33456777789999999999999998887 442 2356665554333
No 288
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.02 E-value=0.0044 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|.|+.|+|||||.+.++.-..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999987543
No 289
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.01 E-value=0.0033 Score=49.97 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999997654
No 290
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.99 E-value=0.012 Score=49.12 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
++...++.+.|.||+||||+|..++..+...+ ..+..+++..
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~D~ 57 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLISTDP 57 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEECCT
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCC
Confidence 34457778899999999999999999887542 2355555543
No 291
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.99 E-value=0.0044 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...++|+|++|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 292
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.99 E-value=0.0027 Score=54.09 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=33.8
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCC
Q 037337 105 DILGALRN-PDISMLGICGMGGIGKTMLEKEVARKAKNH-KLFDLVVFSEMSQS 156 (247)
Q Consensus 105 ~L~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 156 (247)
+.++.+.. .+-..+.|.|.+|+|||+|+..+++..... ..+. ++++-++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 34555542 234678999999999999999999876432 1233 356666654
No 293
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.96 E-value=0.01 Score=50.51 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=30.7
Q ss_pred CccEEEEEc-CCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 114 DISMLGICG-MGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 114 ~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
+.++|+|+| -||+||||+|..++..+... -..+..+++.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 467888875 99999999999999987654 2347778765
No 294
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0049 Score=48.93 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999999864
No 295
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.94 E-value=0.0042 Score=50.48 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccC-C-------CCEEEEEEeCCC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHK-L-------FDLVVFSEMSQS 156 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~-------f~~~~wv~~~~~ 156 (247)
-.++.|+|++|+|||||+..++....... . -..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 37899999999999999999997654310 0 124667766554
No 296
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0062 Score=48.17 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...+|+|.|+.|+||||+++.++..+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988653
No 297
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.0025 Score=57.78 Aligned_cols=47 Identities=17% Similarity=0.054 Sum_probs=34.7
Q ss_pred CcccccchHHHHHHHHHhcCCCcc-----------EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 93 YEAFESRMSTLNDILGALRNPDIS-----------MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~~~~~-----------~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...++|.+.....+.-.+.....+ -+.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 355788887776665555544211 58899999999999999998654
No 298
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.92 E-value=0.0047 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..++|.|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.92 E-value=0.0037 Score=49.30 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999997654
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.91 E-value=0.015 Score=51.73 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEM 153 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 153 (247)
-.+++|.|++|+|||||++.++...... -..++|+..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 4789999999999999999999876543 122455543
No 301
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.89 E-value=0.0043 Score=53.94 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=28.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMS 154 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 154 (247)
..+|+++|++|+||||++..++..+...+ ..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 46899999999999999999998876431 124455443
No 302
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.87 E-value=0.0057 Score=45.30 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999763
No 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.87 E-value=0.0039 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|.|.|++|+||||||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.86 E-value=0.0059 Score=50.49 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+..+++|+|+.|+|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44789999999999999999999876
No 305
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.86 E-value=0.014 Score=52.65 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
...+++.+.|.||+||||+|..++......+ ..+..|+.....+
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D~~~~ 49 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTDPASN 49 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEECCCCcC
Confidence 4467889999999999999999999887552 2467777764443
No 306
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.83 E-value=0.0041 Score=46.98 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~ 137 (247)
-|+|+|.+|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999976
No 307
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.83 E-value=0.0044 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|+|+.|+|||||++.++.-..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987654
No 308
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.011 Score=44.66 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 104 NDILGALRNPDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 104 ~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+.+ +...+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445577899999999999999999854
No 309
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0061 Score=45.61 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHH
Q 037337 104 NDILGALRN-PDISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 104 ~~L~~~L~~-~~~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
..+.+.+.. .....|+|+|.+|+|||||...+..
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 334444444 4567889999999999999999874
No 310
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.81 E-value=0.017 Score=48.11 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 159 (247)
..++...|.||+||||+|..++..+... -..+..++.....+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l 56 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTDPAHSL 56 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCH
Confidence 3677778999999999999999887654 224566666554433
No 311
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.81 E-value=0.0063 Score=51.88 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.....++|+|++|+|||||++.++....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3457999999999999999999997643
No 312
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.80 E-value=0.0089 Score=53.56 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=31.9
Q ss_pred ccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 97 ESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 97 ~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+.+.+..+.+..... -.+..+++|.|+.|+|||||++.++..+...
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 344444444444331 1234789999999999999999999988643
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.80 E-value=0.0064 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.80 E-value=0.0065 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..|++.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999875
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.79 E-value=0.0046 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997654
No 316
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.014 Score=44.11 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35688999999999999999998753
No 317
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.78 E-value=0.016 Score=48.88 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
...++...|.||+||||+|..++..+...+ ..+..+++...
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 456677789999999999999998876542 24566665543
No 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.78 E-value=0.0046 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||++.++.-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999999999997654
No 319
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.78 E-value=0.0058 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
-.+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 320
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.76 E-value=0.0061 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.|++.|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998753
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.75 E-value=0.0059 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
-.+++|.|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 322
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.73 E-value=0.013 Score=52.67 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
+...+|.|.|++|+||||+|+.+.+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34578999999999999999999998764
No 323
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.73 E-value=0.0051 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 324
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.72 E-value=0.0051 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4789999999999999999997654
No 325
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.72 E-value=0.0051 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.71 E-value=0.0067 Score=44.52 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-.|+|+|.+|+|||||+..+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 327
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.69 E-value=0.0095 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999764
No 328
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.68 E-value=0.0054 Score=49.12 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||++.++.-..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999976543
No 329
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.67 E-value=0.0054 Score=49.62 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.-.+++|.|+.|+|||||++.++.-..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 347899999999999999999976543
No 330
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.67 E-value=0.0055 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.285 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999997654
No 331
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.65 E-value=0.0057 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36899999999999999999987654
No 332
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.65 E-value=0.0049 Score=48.30 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999977543
No 333
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.64 E-value=0.021 Score=45.03 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...|++.|+.|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999988653
No 334
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.64 E-value=0.023 Score=49.35 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhccc--------CCCC-EEEEEEeCCCC-CHHHHHHHHHHH--hC-----CC-CCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNH--------KLFD-LVVFSEMSQSP-DIRKVQGEIADK--LG-----LT-FREE 177 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~l~~~i~~~--l~-----~~-~~~~ 177 (247)
..++|.|.+|+|||+|+.++++..... ++-+ ..+|+-++... .+.++...+... +. .. .+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 466789999999999999998876542 1122 46677776553 345555554332 11 01 1111
Q ss_pred ChH-----HHHHHHHHHHc--CCCcEEEEEeCCCC
Q 037337 178 SES-----GRARSLFSRLN--REKRILVILDNIWE 205 (247)
Q Consensus 178 ~~~-----~~~~~l~~~l~--~~kr~LlvlDdv~~ 205 (247)
... ...-.+.+++. .++.+||++||+..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 111 12235667775 36889999999853
No 335
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.63 E-value=0.0072 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999987653
No 336
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.63 E-value=0.043 Score=45.80 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHcCC
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFREESESGRARSLFSRLNRE 193 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 193 (247)
-.++..++|+.|.||++.+..+........ |+....+......+..++...+. .. -+.+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~------------------plf~- 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQG-FEEHHTFSIDPNTDWNAIFSLCQ-AM------------------SLFA- 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHT-CCEEEEEECCTTCCHHHHHHHHH-HH------------------HHCC-
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCC-CCeeEEEEecCCCCHHHHHHHhc-Cc------------------CCcc-
Confidence 457888999999999999999998765432 43222223333445544433321 10 0112
Q ss_pred CcEEEEEeCCCC-c--cchhhhcccCCCCCCCeEEEEeeCc
Q 037337 194 KRILVILDNIWE-H--LDLQVVGIPHGDDHKGCKVLFTARS 231 (247)
Q Consensus 194 kr~LlvlDdv~~-~--~~~~~l~~~~~~~~~~s~iiiTtR~ 231 (247)
++-++|+|+++. . ..++.+...+.....++.+|+++-.
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457888999876 3 3445554444444567777777643
No 337
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.62 E-value=0.014 Score=51.00 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCC--CCEEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChH-----
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKL--FDLVVFSEMSQSP-DIRKVQGEIADKLGL-------TFREESES----- 180 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~----- 180 (247)
..++|.|.+|+|||+|+.++++.....+. -+..+|+-++... .+.++...+...=.. +..+.+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 56678899999999999999998764211 1356777777554 355666666543111 11112221
Q ss_pred -HHHHHHHHHHc--CCCcEEEEEeCCC
Q 037337 181 -GRARSLFSRLN--REKRILVILDNIW 204 (247)
Q Consensus 181 -~~~~~l~~~l~--~~kr~LlvlDdv~ 204 (247)
...-.+.+++. .++.+||++||+.
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 12234556665 4688999999964
No 338
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.60 E-value=0.0082 Score=48.74 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 117 MLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998654
No 339
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.60 E-value=0.006 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|+|+.|+|||||++.++.-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999997654
No 340
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.60 E-value=0.006 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997654
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.60 E-value=0.006 Score=49.57 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.-.+++|+|+.|+|||||++.++.-..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999976543
No 342
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.60 E-value=0.018 Score=51.61 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 96 FESRMSTLNDILGALR--NPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 96 ~~gR~~~~~~L~~~L~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
.+.|.+..+.+.+... .+...+|.+.|++|+||||+|+.+...+...
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 3344455555555552 2335789999999999999999999887643
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.0083 Score=45.15 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0097 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
....|+|+|++|+|||||+..+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998764
No 345
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.58 E-value=0.0091 Score=53.14 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
...+|.++|++|+||||+|+.++..+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34689999999999999999999887543
No 346
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.58 E-value=0.016 Score=48.84 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+..+|+|+|++|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367899999999999999999997654
No 347
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.58 E-value=0.013 Score=48.25 Aligned_cols=34 Identities=15% Similarity=0.386 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 103 LNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 103 ~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+++|.+.+.. .++++.|++|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~G---~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLEG---FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTTT---CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhccC---cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4556665542 588999999999999999999 543
No 348
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.57 E-value=0.028 Score=43.54 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..|++-|..|+||||+++.+++.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC
Confidence 47899999999999999999999863
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.57 E-value=0.0087 Score=43.82 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-|++.|.+|+|||||+..+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.56 E-value=0.0083 Score=43.91 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-|++.|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999998753
No 351
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.55 E-value=0.0081 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998763
No 352
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.55 E-value=0.025 Score=51.52 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
....|+|++|+|||+++..+...+... -...+.+++.......++...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHH
Confidence 578899999999999988887766432 23456777777666666666654
No 353
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.55 E-value=0.0083 Score=43.84 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.|+|.|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.55 E-value=0.0073 Score=51.07 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 36899999999999999999987543
No 355
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.55 E-value=0.0065 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 356
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.53 E-value=0.0066 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999997654
No 357
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.53 E-value=0.0099 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
...++|.|++|+||||+|+.++..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998875
No 358
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.52 E-value=0.0066 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999997654
No 359
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.51 E-value=0.027 Score=48.68 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
....+++|+|+.|+|||||.+.+......
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 44578999999999999999999887653
No 360
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.51 E-value=0.0088 Score=44.04 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 361
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.51 E-value=0.027 Score=46.02 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCCccEEEEEc---CCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 102 TLNDILGALRNPDISMLGICG---MGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
.+..+.+.+.. +.++++|++ -||+||||+|..++..+...+ ..+..+++....+
T Consensus 22 ~~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~~ 78 (298)
T 2oze_A 22 ILEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQAT 78 (298)
T ss_dssp HHHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCH
T ss_pred HHHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 33444444432 235677765 999999999999999876542 2466777766543
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.50 E-value=0.0099 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 363
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.50 E-value=0.009 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
--|+|.|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999875
No 364
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.49 E-value=0.0068 Score=48.72 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|+.|+|||||.+.++.-..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999987653
No 365
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.48 E-value=0.0091 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 037337 117 MLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-|++.|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 366
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.48 E-value=0.0073 Score=56.67 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=37.2
Q ss_pred CcccccchHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 93 YEAFESRMSTLNDILGALRN-------------PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 93 ~~~~~gR~~~~~~L~~~L~~-------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++.|-+...+.|.+.+.- .....+.++|++|+|||+||+.++.....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 45567777777777765531 12456889999999999999999998754
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.47 E-value=0.01 Score=43.87 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999999764
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.47 E-value=0.0087 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 369
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.45 E-value=0.0094 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
--|+|.|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
No 370
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.45 E-value=0.0093 Score=44.38 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
....|+|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34578999999999999999998753
No 371
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.44 E-value=0.032 Score=43.62 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...|++.|+.|+||||++..++..+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999998875
No 372
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.44 E-value=0.0089 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999863
No 373
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.43 E-value=0.0094 Score=45.05 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||+..+....
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999888753
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.43 E-value=0.0096 Score=44.20 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999865
No 375
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.43 E-value=0.0097 Score=46.47 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIADKLGLTFRE---ESESGRARSLFSRLN 191 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~ 191 (247)
..+..++|+.|.||||.+...+++..... ....++ ....+. +.-...++..++..... .+. ..+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g-~kVli~-k~~~d~--R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK-QHAIVF-KPCIDN--RYSEEDVVSHNGLKVKAVPVSAS----KDIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEE-ECC-------------------CCEEECSSG----GGGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEE-EeccCC--cchHHHHHhhcCCeeEEeecCCH----HHHHHHHh
Confidence 46888999999999999999999887653 333333 322111 11112344444433221 111 12333232
Q ss_pred CCCcEEEEEeCCCCc--cchhhhcccCCCCCCCeEEEEeeCchhhh
Q 037337 192 REKRILVILDNIWEH--LDLQVVGIPHGDDHKGCKVLFTARSLDVL 235 (247)
Q Consensus 192 ~~kr~LlvlDdv~~~--~~~~~l~~~~~~~~~~s~iiiTtR~~~va 235 (247)
. +--+|++|++.-. ++++.+ ..+. ..|..||+|-++.+.-
T Consensus 100 ~-~~dvViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~~DF~ 141 (214)
T 2j9r_A 100 E-EMDVIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLDQDFR 141 (214)
T ss_dssp S-SCCEEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECSBCTT
T ss_pred c-CCCEEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEecccccc
Confidence 2 2248999998754 334333 2211 2377899999965543
No 376
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.42 E-value=0.011 Score=44.67 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4577899999999999999999764
No 377
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.42 E-value=0.059 Score=43.13 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCccEEEE-EcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHH
Q 037337 113 PDISMLGI-CGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKV 162 (247)
Q Consensus 113 ~~~~~v~I-~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l 162 (247)
...++|+| .+-||+||||+|..++..+. .+ ..+..+++....+....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~~~ 72 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASITSY 72 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHHHH
Confidence 34567777 57899999999999999988 52 45777888776544433
No 378
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.40 E-value=0.0097 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999999864
No 379
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.40 E-value=0.025 Score=47.39 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
.+..+++|.|++|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45689999999999999999999876653
No 380
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.39 E-value=0.01 Score=43.54 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
--|+|+|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999874
No 381
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.39 E-value=0.0086 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~ 137 (247)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999999854
No 382
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.38 E-value=0.015 Score=44.51 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
+...|+++|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999964
No 383
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0096 Score=43.80 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
--|+|+|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999864
No 384
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.35 E-value=0.0097 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 37899999999999999999986543
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.35 E-value=0.0044 Score=49.91 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
+...|+|.|..|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987753
No 386
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.34 E-value=0.01 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
...|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999876
No 387
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.33 E-value=0.011 Score=44.81 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||+..+....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 4568899999999999999998753
No 388
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.33 E-value=0.017 Score=49.19 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEE-EEEeCCCCCHHHHHHHHHHH--hCCCCCCCChHHHHHHHHHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVV-FSEMSQSPDIRKVQGEIADK--LGLTFREESESGRARSLFSR 189 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~l~~~i~~~--l~~~~~~~~~~~~~~~l~~~ 189 (247)
.....++|+|+.|+|||||++.++..+... ..+.+ ++.-.-......- ..+..+ ++. +.......+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~-----~~~~~~~~l~~~ 205 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAA 205 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccC-ceEEEeeecCC-----CHHHHHHHHHHH
Confidence 345789999999999999999999876543 12333 3321111000000 000000 000 111223455666
Q ss_pred HcCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 190 LNREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 190 l~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
|.. .+-+|++|+..+.+.+....... ..|..|+.|+...++
T Consensus 206 L~~-~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 206 LRE-DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp TTS-CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred hhh-CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 655 35678889887654433321221 235567788776654
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.33 E-value=0.029 Score=47.07 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+..+++|.|.+|+|||||+..++....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34568899999999999999999987664
No 390
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.33 E-value=0.0098 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.305 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.33 E-value=0.011 Score=44.96 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||...+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999853
No 392
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.32 E-value=0.0099 Score=50.66 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 46899999999999999999987553
No 393
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.0086 Score=48.43 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998654
No 394
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.31 E-value=0.0075 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.120 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
...+++|.|+.|+|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999998765
No 395
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.31 E-value=0.011 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|.|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999997653
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.30 E-value=0.0095 Score=44.27 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.--|+|+|.+|+|||||+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999999754
No 397
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.30 E-value=0.011 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
...|+++|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.29 E-value=0.013 Score=44.50 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
....-|+|+|.+|+|||||+..+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34467889999999999999999875
No 399
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.29 E-value=0.01 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 46899999999999999999987543
No 400
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.29 E-value=0.011 Score=43.75 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998764
No 401
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.29 E-value=0.0096 Score=45.31 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHH
Q 037337 112 NPDISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 112 ~~~~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
..+...|+|+|.+|+|||||+..+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34456789999999999999999864
No 402
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.28 E-value=0.028 Score=50.57 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 102 TLNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 102 ~~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
+....+.....+ .++.|.|++|+||||++..+...+...
T Consensus 193 ~Q~~Av~~~~~~--~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 193 EQASVLDQLAGH--RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp HHHHHHHHHTTC--SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 334444444433 788999999999999999999887654
No 403
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.28 E-value=0.013 Score=45.29 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..+|.|.|+.|+||||+++.++..+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 368999999999999999999998764
No 404
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.28 E-value=0.011 Score=44.37 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 405
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.27 E-value=0.023 Score=49.94 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred ccEEEEEcCCCCcHHHHHH-HHHHHhcccCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChHH---
Q 037337 115 ISMLGICGMGGIGKTMLEK-EVARKAKNHKLFDL-VVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESESG--- 181 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~--- 181 (247)
-..++|.|.+|+|||+||. .+++... .+. .+|+-++... .+.++...+...=... ..+.+...
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 3567899999999999965 5655432 343 5777777664 3455555554422111 11122211
Q ss_pred ---HHHHHHHHHc-CCCcEEEEEeCCCC
Q 037337 182 ---RARSLFSRLN-REKRILVILDNIWE 205 (247)
Q Consensus 182 ---~~~~l~~~l~-~~kr~LlvlDdv~~ 205 (247)
..-.+.+++. .++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1234555553 35789999999753
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.26 E-value=0.011 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46899999999999999999987543
No 407
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.26 E-value=0.023 Score=50.04 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHH-HHHHHhcccCCCCE-EEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChHH----
Q 037337 116 SMLGICGMGGIGKTMLEK-EVARKAKNHKLFDL-VVFSEMSQSP-DIRKVQGEIADKLGL-------TFREESESG---- 181 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~~---- 181 (247)
..++|.|.+|+|||+||. .+++... .+. .+|+-+++.. .+.++...+...=.. ...+.+...
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 577899999999999965 5655432 453 5777777664 345555555442111 111122211
Q ss_pred --HHHHHHHHHc-CCCcEEEEEeCCCC
Q 037337 182 --RARSLFSRLN-REKRILVILDNIWE 205 (247)
Q Consensus 182 --~~~~l~~~l~-~~kr~LlvlDdv~~ 205 (247)
..-.+.+++. .++.+||++||+..
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 1234555553 35789999999854
No 408
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.25 E-value=0.013 Score=51.40 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhccc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKNH 142 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 142 (247)
....|.++|++|+||||+++.++..+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34688999999999999999999887643
No 409
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.25 E-value=0.07 Score=47.48 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC-HHHHHHHHHH----HhC----------CCCCCCCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD-IRKVQGEIAD----KLG----------LTFREESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i~~----~l~----------~~~~~~~~ 179 (247)
-..++|.|..|+|||+|+.++++... -+..+|+-++...+ +.+++..+-+ ..+ ....+.+.
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~ 302 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPV 302 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCH
Confidence 46789999999999999999877532 35788888887665 4455444322 011 01111222
Q ss_pred HH------HHHHHHHHH-cCCCcEEEEEeCCCCc
Q 037337 180 SG------RARSLFSRL-NREKRILVILDNIWEH 206 (247)
Q Consensus 180 ~~------~~~~l~~~l-~~~kr~LlvlDdv~~~ 206 (247)
.. ..-.+.+++ ..++.+||++|++...
T Consensus 303 ~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 303 AAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 11 122344555 2357899999998743
No 410
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.24 E-value=0.016 Score=46.39 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=31.9
Q ss_pred CccEEEEE-cCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC
Q 037337 114 DISMLGIC-GMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP 157 (247)
Q Consensus 114 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 157 (247)
+.++|+|+ +-||+||||+|..++..+...+ ..+..+++....
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~ 47 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLG--KRVLLVDLDPQG 47 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCC--CCEEEEECCCCc
Confidence 45778886 7899999999999999887542 346777776553
No 411
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.24 E-value=0.011 Score=50.03 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...++|+|+.|+|||||++.++..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468899999999999999999987654
No 412
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.24 E-value=0.011 Score=50.31 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 36899999999999999999987543
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.23 E-value=0.019 Score=47.30 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 103 LNDILGALRNPDISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 103 ~~~L~~~L~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
++++..++.. .+++|.|++|+|||||.+.+.....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhccccc
Confidence 4556665543 5889999999999999999986544
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.22 E-value=0.0084 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.--|+++|.+|+|||||+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999875
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.22 E-value=0.012 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998754
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.21 E-value=0.012 Score=43.63 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..|+|+|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 417
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.21 E-value=0.011 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 4789999999999999999998654
No 418
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.21 E-value=0.012 Score=43.93 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-.|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998753
No 419
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.20 E-value=0.012 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.19 E-value=0.013 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
--|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999865
No 421
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.013 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 568899999999999999998764
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.18 E-value=0.013 Score=44.16 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578899999999999999998763
No 423
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.18 E-value=0.012 Score=44.03 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|.|.+|+|||||+..+....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998753
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.17 E-value=0.011 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+..+++|.|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35789999999999999999998764
No 425
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.16 E-value=0.051 Score=43.97 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHHHHHHHhc----CCCccEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 101 STLNDILGALR----NPDISMLGICGM-GGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 101 ~~~~~L~~~L~----~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+.+..|...|. +.+.++|.|+|. ||+||||+|..++..+... -..++.|++..
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~--G~rVLLID~D~ 121 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA--GYKTLIVDGDM 121 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCS
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence 44455544332 345688999875 8999999999999988754 23467777763
No 426
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.16 E-value=0.033 Score=49.00 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=52.9
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhcc----cCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCChH
Q 037337 115 ISMLGICGMGGIGKTMLE-KEVARKAKN----HKLFD-LVVFSEMSQSP-DIRKVQGEIADKLGL-------TFREESES 180 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~-------~~~~~~~~ 180 (247)
-..++|.|.+|+|||+|| ..+++.... .++.+ ..+|+-++... .+.++...+...=.. ...+.+..
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 356789999999999995 466665542 11233 46788887664 345555555442111 11112221
Q ss_pred H------HHHHHHHHHc-CCCcEEEEEeCCCC
Q 037337 181 G------RARSLFSRLN-REKRILVILDNIWE 205 (247)
Q Consensus 181 ~------~~~~l~~~l~-~~kr~LlvlDdv~~ 205 (247)
. ..-.+.+++. .++.+||++||+..
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1 1224555553 35789999999854
No 427
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.16 E-value=0.011 Score=44.34 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999865
No 428
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.16 E-value=0.013 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568899999999999999998753
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.16 E-value=0.013 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 430
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.16 E-value=0.013 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.066 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.--|+|+|.+|+|||||++.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 356889999999999999766654
No 431
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.15 E-value=0.039 Score=42.71 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=32.7
Q ss_pred EEEE-EcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHH
Q 037337 117 MLGI-CGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKV 162 (247)
Q Consensus 117 ~v~I-~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l 162 (247)
+|+| .+-||+||||+|..++..+... - .+..+++....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHHH
Confidence 4455 5889999999999999998765 2 6778888877655443
No 432
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.15 E-value=0.012 Score=49.83 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.-.+++|.|+.|+|||||.+.++.-..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 347899999999999999999976543
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.14 E-value=0.013 Score=43.58 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.-|+|+|.+|+|||||+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 434
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.13 E-value=0.014 Score=43.79 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+...|+|.|.+|+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678999999999999999998654
No 435
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.13 E-value=0.017 Score=43.63 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-.|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998863
No 436
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.13 E-value=0.028 Score=44.37 Aligned_cols=106 Identities=11% Similarity=-0.029 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS-PDIRKVQGEIADKLGLTFRE---ESESGRARSLFSRL 190 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~l~~~l 190 (247)
..+..++|.-|.||||-+...+++....+ ....++-..... .. . .+...++..... .+..+ +.+.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~d----i~~~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRD----VAQEA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEEEETTCCCC----------------CEEEEESSGGG----GHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHH----HHHHh
Confidence 36888999999999998888888877653 334443322222 22 2 344444433221 11222 33333
Q ss_pred cCCCcEEEEEeCCCCccchhhhcccCCCCCCCeEEEEeeCchhh
Q 037337 191 NREKRILVILDNIWEHLDLQVVGIPHGDDHKGCKVLFTARSLDV 234 (247)
Q Consensus 191 ~~~kr~LlvlDdv~~~~~~~~l~~~~~~~~~~s~iiiTtR~~~v 234 (247)
. +--+|++|++.-.....++...+.. .|..||+|.++.+.
T Consensus 89 -~-~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~DF 128 (234)
T 2orv_A 89 -L-GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGTF 128 (234)
T ss_dssp -T-TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBCT
T ss_pred -c-cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccccc
Confidence 2 2248999998755434444333322 57899999998554
No 437
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.12 E-value=0.013 Score=43.68 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578899999999999999998643
No 438
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.014 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568899999999999999998754
No 439
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.10 E-value=0.09 Score=42.90 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHh----cCCCccEEEEEc-CCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCC
Q 037337 101 STLNDILGAL----RNPDISMLGICG-MGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQS 156 (247)
Q Consensus 101 ~~~~~L~~~L----~~~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 156 (247)
+.+..|...| .+.+.++|.|+| .||+||||+|..++..+... -..++.|++...
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~~ 132 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQT--NKRVLLIDCDMR 132 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEeccCC
Confidence 4444444433 234567888876 58999999999999988754 235777877654
No 440
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.09 E-value=0.079 Score=43.52 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCCccEEEEEcC-CCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 037337 112 NPDISMLGICGM-GGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ 155 (247)
Q Consensus 112 ~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 155 (247)
+.+.++|.|+|. ||+||||+|..++..+... -..++.|++..
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 345688999886 8999999999999988754 23477777765
No 441
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.07 E-value=0.0077 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.-.+++|+|+.|+|||||++.++.-+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 347899999999999999999976543
No 442
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.07 E-value=0.014 Score=43.89 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.+.+|+|+.|+|||||+..++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999997643
No 443
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.06 E-value=0.0094 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
-.+++|.|+.|+|||||.+.++.-..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 36899999999999999999987543
No 444
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.06 E-value=0.013 Score=43.59 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=44.46 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578899999999999999998653
No 446
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.05 E-value=0.014 Score=44.55 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 447
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.05 E-value=0.01 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVA 136 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~ 136 (247)
...|+|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 448
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.04 E-value=0.015 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+.|.|.+|+||||||..+..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 57889999999999999999874
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.04 E-value=0.014 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999998754
No 450
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.04 E-value=0.013 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+++|.|+.|+|||||.+.++.-..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999999999999999987654
No 451
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.03 E-value=0.014 Score=45.00 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 452
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.03 E-value=0.11 Score=45.70 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=51.2
Q ss_pred ccEEEEEcCCCCcHHHHH-HHHHHHhcccCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCCCChHH---
Q 037337 115 ISMLGICGMGGIGKTMLE-KEVARKAKNHKLFD-LVVFSEMSQSP-DIRKVQGEIADKLGLT-------FREESESG--- 181 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~~~~~~~--- 181 (247)
-..++|.|..|+|||+|+ ..+++. .. .+ .++|+-+++.. .+.++...+...=... ..+.+...
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~-~~---~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ-RD---SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT-SS---SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh-cc---CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 356789999999999996 455553 22 23 35788888764 3556666654431111 11122211
Q ss_pred ---HHHHHHHHH-cCCCcEEEEEeCCCC
Q 037337 182 ---RARSLFSRL-NREKRILVILDNIWE 205 (247)
Q Consensus 182 ---~~~~l~~~l-~~~kr~LlvlDdv~~ 205 (247)
..-.+.+++ ..++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 122344555 245789999999864
No 453
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.02 E-value=0.015 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998753
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.02 E-value=0.013 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-.+++|.|+.|+|||||.+.++.-.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34789999999999999999998643
No 455
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.014 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568899999999999999998753
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.00 E-value=0.015 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 457
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.015 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
+..-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34678999999999999999998754
No 458
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.99 E-value=0.017 Score=52.41 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
...+|.+.|++|+||||+|+.+...+..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998743
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.015 Score=44.11 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||+..+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998754
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.98 E-value=0.016 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-|+|+|.+|+|||||+..+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999998754
No 461
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.97 E-value=0.016 Score=43.85 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
--|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 462
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.94 E-value=0.016 Score=43.75 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
...|+|+|.+|+|||||+..+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998754
No 463
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.92 E-value=0.0098 Score=45.70 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 113 PDISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 113 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.....++|+|.+|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34467999999999999999988654
No 464
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.92 E-value=0.017 Score=43.62 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998653
No 465
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.91 E-value=0.016 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 037337 117 MLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 117 ~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
-|+|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999999764
No 466
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.91 E-value=0.079 Score=45.25 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=32.5
Q ss_pred CccEEEEE-cCCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCCCCH
Q 037337 114 DISMLGIC-GMGGIGKTMLEKEVARKAKNH----KLFDLVVFSEMSQSPDI 159 (247)
Q Consensus 114 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~ 159 (247)
..++|+|+ |-||+||||+|..++..+... ..-..+..+++....+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l 157 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSA 157 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCCh
Confidence 35677776 899999999999999987631 00124777888765443
No 467
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.91 E-value=0.037 Score=45.02 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=33.9
Q ss_pred cEEEEE-cCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-CCCHHHHH
Q 037337 116 SMLGIC-GMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQ-SPDIRKVQ 163 (247)
Q Consensus 116 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~ 163 (247)
++|+|+ +-||+||||+|..++..+...+ ..+..+++.. ..+....+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHh
Confidence 467775 7899999999999999887552 2467788877 65555443
No 468
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.91 E-value=0.018 Score=48.92 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCC
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPD 158 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 158 (247)
+++.+.|.||+||||+|..++......+ ..+..+++ ...+
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g--~~vllvd~-~~~~ 42 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQG--KRVLLAGL-AEPV 42 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTT--CCEEEEEC-SCSH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCC--CCeEEEeC-CCCC
Confidence 5778899999999999999998876542 24666776 4443
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.016 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456889999999999999999874
No 470
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.016 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999874
No 471
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.017 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..|+|+|.+|+|||||+..+....
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 568899999999999999998753
No 472
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.86 E-value=0.017 Score=43.97 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999999764
No 473
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.85 E-value=0.0089 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 474
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.82 E-value=0.017 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 475
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.81 E-value=0.017 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.-|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 476
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.81 E-value=0.031 Score=47.24 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
.+++|.|++|+|||||++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 5889999999999999999986544
No 477
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.81 E-value=0.02 Score=49.38 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+++|.|+.|+|||||.+.++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999873
No 478
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.79 E-value=0.014 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVAR 137 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~ 137 (247)
--|+|+|++|+|||||.+.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3458999999999999999764
No 479
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.78 E-value=0.098 Score=46.72 Aligned_cols=86 Identities=16% Similarity=0.250 Sum_probs=51.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCC-CHHHHHHHHHH----HhCCC----------CCCCCh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSP-DIRKVQGEIAD----KLGLT----------FREESE 179 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~----~l~~~----------~~~~~~ 179 (247)
-..++|.|..|+|||+|+.++++... -+.++|+-++... .+.+++..+-+ .++.. ..+.+.
T Consensus 232 Gqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~ 307 (600)
T 3vr4_A 232 GGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPV 307 (600)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCH
T ss_pred CCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCH
Confidence 46789999999999999999987633 3567888887663 33344433221 01110 011121
Q ss_pred HH------HHHHHHHHHc-CCCcEEEEEeCCC
Q 037337 180 SG------RARSLFSRLN-REKRILVILDNIW 204 (247)
Q Consensus 180 ~~------~~~~l~~~l~-~~kr~LlvlDdv~ 204 (247)
.. ..-.+.+++. .++.+||++|++.
T Consensus 308 ~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~t 339 (600)
T 3vr4_A 308 AAREASIYTGITIAEYFRDMGYDVAIMADSTS 339 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecchH
Confidence 11 1234455553 3578999999985
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.75 E-value=0.022 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||+..+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998753
No 481
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.70 E-value=0.02 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4578899999999999999998653
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.69 E-value=0.02 Score=44.07 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
.--|+|+|.+|+|||||+..+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998653
No 483
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.019 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 484
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.68 E-value=0.019 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999754
No 485
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.048 Score=51.11 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIAD 168 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 168 (247)
....|.|++|+|||+++..+...+... -...+.+.+.......++...+..
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 578899999999998888777655321 123566777776667777776654
No 486
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.67 E-value=0.02 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
.-|+|+|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999876
No 487
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.66 E-value=0.021 Score=43.25 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999764
No 488
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.66 E-value=0.12 Score=48.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..+.|.|+.|+||||++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999976666544
No 489
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.64 E-value=0.016 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
..++|+|+.|+|||||++.++..+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 68999999999999999999876543
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.64 E-value=0.011 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=10.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998754
No 491
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.64 E-value=0.019 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999754
No 492
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.62 E-value=0.06 Score=50.39 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCCCCHHHHHHHHH
Q 037337 116 SMLGICGMGGIGKTMLEKEVARKAKNHKLFDLVVFSEMSQSPDIRKVQGEIA 167 (247)
Q Consensus 116 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 167 (247)
....|.|++|+|||+++..+...+... -...+.+.+.......++...+.
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHH
Confidence 578899999999999988887776542 12356666666655556555543
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.62 E-value=0.021 Score=43.72 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456889999999999999999764
No 494
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.61 E-value=0.016 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||+|+..+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457889999999999999977664
No 495
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.61 E-value=0.028 Score=44.23 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAK 140 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 140 (247)
..+|.|.|+.|+||||+|+.++..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998875
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.60 E-value=0.021 Score=43.59 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
..-|+|+|.+|+|||||+..+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568899999999999999998753
No 497
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.59 E-value=0.025 Score=44.19 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999765
No 498
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.59 E-value=0.023 Score=44.85 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHh
Q 037337 114 DISMLGICGMGGIGKTMLEKEVARKA 139 (247)
Q Consensus 114 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 139 (247)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998653
No 499
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.58 E-value=0.023 Score=47.81 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHhcc
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARKAKN 141 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 141 (247)
-.+++|.|+.|+|||||.+.++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 478999999999999999999998653
No 500
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.57 E-value=0.02 Score=44.30 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 037337 115 ISMLGICGMGGIGKTMLEKEVARK 138 (247)
Q Consensus 115 ~~~v~I~G~~GiGKTtLa~~~~~~ 138 (247)
..-|+|+|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999754
Done!