BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037338
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 137/418 (32%), Positives = 203/418 (48%), Gaps = 76/418 (18%)
Query: 6 EVETLAREIIKPSSPTPHHLRNLKLSLLDQIIPVEYTAVILFYRGNDDTH-HHSHISQHL 64
++E ++ E+I PSSPTP L+ K+S LDQ++ + ILFY D++ + SQHL
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 65 KQSLSETLKIYYPFAGIIKDHILVECKDNGVEYVEAQSNCLLFKKKKRRESDILLRPIQK 124
KQSLS+ L +YP AG I + V+C D+GV +VEA+ L + + + ++K
Sbjct: 64 KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQN------VVELEK 117
Query: 125 FLRKFLP--------IEIESPKAGSAPLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTSTV 176
L ++LP IE+ PL +K FF+CGG AIG LSHKI D + +T
Sbjct: 118 -LDQYLPSAAYPGGKIEVNE----DVPLA-VKISFFECGGTAIGVNLSHKIADVLSLATF 171
Query: 177 INNWAATARGSGKTSENIPEYN-AASIFPPDDFLKPYMDVIGTNYITKRFVFDASNIAAL 235
+N W AT R G+T +P ++ AA FPP D V N + KRFVFD I AL
Sbjct: 172 LNAWTATCR--GETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGAL 229
Query: 236 RTKVASASVPKP-TRVEAVTALIWKCTIAASRSIRGFPNLSLTVHSMNLRKMVMQTLP-- 292
R + +SAS K +RV+ V A IWK I +R+ G N + V ++NLR + LP
Sbjct: 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 293 -----------------------------DGVEGDEIDY-------------------YM 304
+E E D+
Sbjct: 290 AMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLS 349
Query: 305 YSNLSRLQKYETDFGWEKPIWMTIPNY-MHNMFMLLGTRDGKGMEALVSLSKEDMALF 361
+++ RL Y+ DFGW KP+ + N +L+ TR G G+EA + +++++MA+
Sbjct: 350 FTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAML 407
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 4 SIEVETLAREIIKPSSPTPHHLRNLKLSLLDQIIPVEYTAVILFYRGNDDTHHHSHISQH 63
S+++E +++P+ TP RNL S +D ++P +T + FYR ++ ++
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD--AKV 60
Query: 64 LKQSLSETLKIYYPFAGIIK----DHILVECKDNGVEYVEAQSNCLLFKKKKRRESDILL 119
LK +LS L +YP AG +K I +EC GV +VEA ESD ++
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEA-------------ESDGVV 107
Query: 120 RPIQKF-----LRKFLPIEIESPKAGSAPLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTS 174
F LR+ +P S S LL+++ +FKCGGV++G + H DG +
Sbjct: 108 DDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 167
Query: 175 TVINNWAATARG 186
IN+W+ ARG
Sbjct: 168 HFINSWSDMARG 179
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 310 RLQKYETDFGWEKPIWMTIPN--YMHNMFMLLGTRDGKGMEALVSLSKEDMALFE 362
RL ++ DFGW +PI+M Y F+L + M +SL E M LF+
Sbjct: 379 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 4 SIEVETLAREIIKPSSPTPHHLRNLKLSLLDQIIPVEYTAVILFYRGNDDTHHHSHISQH 63
++++E +++P+ TP RNL S +D ++P +T + FYR ++ ++
Sbjct: 2 AMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD--AKV 57
Query: 64 LKQSLSETLKIYYPFAGIIK----DHILVECKDNGVEYVEAQSNCLLFKKKKRRESDILL 119
LK +LS L +YP AG +K I +EC GV +VEA ESD ++
Sbjct: 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEA-------------ESDGVV 104
Query: 120 RPIQKF-----LRKFLPIEIESPKAGSAPLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTS 174
F LR+ +P S S LL+++ +FKCGGV++G + H DG +
Sbjct: 105 DDFGDFAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 164
Query: 175 TVINNWAATARG 186
IN+W+ ARG
Sbjct: 165 HFINSWSDMARG 176
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 310 RLQKYETDFGWEKPIWMTIPN--YMHNMFMLLGTRDGKGMEALVSLSKEDMALFE 362
RL ++ DFGW +PI+M Y F+L + M +SL E M LF+
Sbjct: 376 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 4 SIEVETLAREIIKPSSPTPHHLRNLKLSLLDQIIPVEYTAVILFYRGNDDTHHHSHISQH 63
S+++E +++P+ TP RNL S +D ++P +T + FYR ++ ++
Sbjct: 5 SMKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFD--AKV 60
Query: 64 LKQSLSETLKIYYPFAGIIK----DHILVECKDNGVEYVEAQSNCLLFKKKKRRESDILL 119
LK +LS L +YP AG +K I +EC GV +VEA+S+ ++ D
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVV--------DDFGD 112
Query: 120 RPIQKFLRKFLPIEIESPKAGSAPLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTSTVINN 179
LR+ +P S S LL+++ +FK GGV++G + H DG + IN+
Sbjct: 113 FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINS 172
Query: 180 WAATARG 186
W+ ARG
Sbjct: 173 WSDMARG 179
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 310 RLQKYETDFGWEKPIWMTIPN--YMHNMFMLLGTRDGKGMEALVSLSKEDMALFE 362
RL ++ DFGW +PI+M Y F+L + M +SL E M LF+
Sbjct: 379 RLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQ 433
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/386 (24%), Positives = 147/386 (38%), Gaps = 90/386 (23%)
Query: 63 HLKQSLSETLKIYYPFAGIIKDHILVECKDNGVEYVEAQSNCLLFKKKKRRESDIL---L 119
++K SLS TLK +YPF G + + K + YVE S + F + +++
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYP-APTKKPEICYVEGDSVAVTFAECNLDLNELTGNHP 122
Query: 120 RPIQKFLRKFLPIEIESPKAGSA---PLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTSTV 176
R KF +PI ES + PL ++ F G+AIG H +GD T
Sbjct: 123 RNCDKFY-DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 177 INNWAATARGSGKTSENI------PEYNAASIFPPDD--FLK-PYMDVIGTNYITKR--- 224
+ W + AR SG E+ P Y+ +P D +LK ++ +Y+T+
Sbjct: 182 LKAWTSIAR-SGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 225 --------FVFDASNIAALRTKVASASVPKPTRVEAVT---ALIWKCTIAASRSIR---- 269
F+ + I L+ +V A +P V + T A IW C IA SR+ +
Sbjct: 241 PSDKLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIWSC-IAKSRNDKLQLF 298
Query: 270 GFP-----------------------------NL--------------------SLTVHS 280
GFP NL +LT +
Sbjct: 299 GFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYK 358
Query: 281 MNLRKMVMQTLPDGV-EGDEIDYYMYSNLSRLQKYETDFGWEKPIWMTIPNYMHNMFMLL 339
+ K M++ D V EG S +L+ Y+ DFGW KP + + HN + +
Sbjct: 359 DGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKKLETVSIDHNGAISI 418
Query: 340 GT--RDGKGMEALVSLSKEDMALFEH 363
+ + +E V +S M F H
Sbjct: 419 NSCKESNEDLEIGVCISATQMEDFVH 444
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 38/243 (15%)
Query: 63 HLKQSLSETLKIYYPFAGIIKDHILVECKDNGVEYVEAQSNCLLFKKKKRRESDIL---L 119
++K SLS TLK +YPF G + + K + YVE S + F + +++
Sbjct: 64 NIKHSLSITLKHFYPFVGKLVVYP-APTKKPEICYVEGDSVAVTFAECNLDLNELTGNHP 122
Query: 120 RPIQKFLRKFLPIEIESPKAGSA---PLLLIKFIFFKCGGVAIGNCLSHKIGDGCTTSTV 176
R KF +PI ES + PL ++ F G+AIG H +GD T
Sbjct: 123 RNCDKFY-DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCF 181
Query: 177 INNWAATARGSGKTSENI------PEYNAASIFPPDD--FLK-PYMDVIGTNYITKR--- 224
+ W + AR SG E+ P Y+ +P D +LK ++ +Y+T+
Sbjct: 182 LKAWTSIAR-SGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 225 --------FVFDASNIAALRTKVASASVPKPTRVEAVT---ALIWKCTIAASRSIR---- 269
F+ + I L+ +V A +P V + T A IW C IA SR+ +
Sbjct: 241 PSDKLRATFILTRAVINQLKDRVL-AQLPTLEYVSSFTVACAYIWSC-IAKSRNDKLQLF 298
Query: 270 GFP 272
GFP
Sbjct: 299 GFP 301
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 92/239 (38%), Gaps = 52/239 (21%)
Query: 64 LKQSLSETLKIYYPFAGIIKDHILVECKDNG-----VEYVEAQSNCLLFKKKKRRESDIL 118
LK SLS TLK Y P AG V C + + YV S ++F + + ++
Sbjct: 60 LKDSLSLTLKYYLPLAGN------VACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLI 113
Query: 119 ---LRPIQKFLRKFLPIEIE---SPKAGSAPLLLIKFIFFKCGGVAIGNCLSHKIGDGCT 172
R + F F+P E +P AP+L I+ F G++IG H GDG T
Sbjct: 114 GYHPRNTKDFYH-FVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGAT 172
Query: 173 TSTVINNWAATARGSGK----TSENIPEYNAASIFPPD--------------------DF 208
+ WA + G +E IP Y+ + I P+ D
Sbjct: 173 IVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDV 232
Query: 209 LKPYMDVIGTNYITKRFVFDASNIAALRTKVASASVPKPTRVEAVT---ALIWKCTIAA 264
+ P V GT IT+ + N+ R PK T V + T A +W C I +
Sbjct: 233 VTPPDKVRGTFIITRHDIGKLKNLVLTRR-------PKLTHVTSFTVTCAYVWTCIIKS 284
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 21/145 (14%)
Query: 161 NCLSHKIGDGCTTSTVINNWAATARGSGKTSENIPEYNAASIFPPDDFLKPYMDVIGTNY 220
C+ H+ GC+ + G+G + IP A F + P D +G
Sbjct: 26 GCMEHR--GGCSADN------DSGDGAGVMTA-IPRELLAQWFNTRNLPMPDGDRLGVG- 75
Query: 221 ITKRFVFDASNIAALRTKVASASVPKPTRVEAVTALIWKCTIAASRSIRGFPNLSLTVHS 280
VF +A +VA A V + R+E +T L W+ + + + G + H
Sbjct: 76 ----MVFLPQEPSA--REVARAYVEEVVRLEKLTVLGWR-EVPVNSDVLGIQAKNNQPHI 128
Query: 281 MNLRKMVMQTLPDGVEGDEIDYYMY 305
+ ++ T P+G GDE+D +Y
Sbjct: 129 ----EQILVTCPEGCAGDELDRRLY 149
>pdb|2OLC|A Chain A, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2OLC|B Chain B, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2PU8|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PU8|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
Length = 397
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 273 NLSLTVHSMNLRKMVMQTLPDGVEGDEIDYYMYSNLSRLQKYETDFGWEKPIWMTIPNYM 332
N S+ + + L+K + + + GD ++++ + + +F + PI + ++
Sbjct: 208 NDSVKIEAAKLKKSFLTSAETLIHGDLHTGSIFASEHETKVIDPEFAFYGPIGFDVGQFI 267
Query: 333 HNMFMLLGTRDGKGMEAL 350
N+F+ +RDG E L
Sbjct: 268 ANLFLNALSRDGADREPL 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,366,212
Number of Sequences: 62578
Number of extensions: 490316
Number of successful extensions: 2000
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 24
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)