Query 037339
Match_columns 297
No_of_seqs 168 out of 355
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 19:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oku_A Acyl-COA dehydrogenase 20.2 3.8E+02 0.013 22.3 11.0 107 144-254 2-123 (131)
2 3fbi_B Mediator of RNA polymer 19.8 83 0.0028 26.5 3.4 15 230-244 50-64 (130)
3 3k6c_A Uncharacterized protein 11.7 88 0.003 24.9 1.5 33 233-286 30-62 (95)
4 3c5t_B Exendin-4, exenatide; l 11.3 1.2E+02 0.0039 19.8 1.7 22 228-252 2-23 (31)
5 1jmt_B Splicing factor U2AF 65 10.8 80 0.0027 20.1 0.8 11 79-89 4-14 (28)
6 2fkz_A Bacterioferritin; ferro 10.7 2.1E+02 0.0073 21.7 3.5 21 172-192 40-61 (155)
7 2lep_A Rhomboid protease GLPG 11.9 73 0.0025 23.1 0.0 20 219-238 7-26 (69)
8 4am5_A Bacterioferritin; metal 8.3 1.8E+02 0.0061 23.2 2.2 51 136-192 11-61 (159)
9 1lko_A Rubrerythrin all-iron(I 6.6 3.5E+02 0.012 22.8 3.3 108 137-252 14-147 (191)
10 3i7a_A Putative metal-dependen 6.6 5.8E+02 0.02 22.1 4.8 49 233-283 4-54 (281)
No 1
>2oku_A Acyl-COA dehydrogenase family protein; the acyl-COA dehydrogenase, PSI-2, structural genomics, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.48.5.1
Probab=20.16 E-value=3.8e+02 Score=22.33 Aligned_cols=107 Identities=14% Similarity=0.181 Sum_probs=61.1
Q ss_pred hhccCCchHHHHH-HHHHH-HhcCCcCcch--HHHHHHHHHHHHHHHHHHHHh-hCCchHH---HHHHHHHHHHHHHHHH
Q 037339 144 TVAAVPGMVGGML-LHCKS-LRKFEHSGGW--IKALLEEAENERMHLMTFIEL-ARPQWYE---RALVFAVQGVFFNAYF 215 (297)
Q Consensus 144 TVA~VPGmV~gml-rHL~S-LR~mkrd~gw--I~tLLeEAENERmHLltf~~l-~kP~~~~---R~lv~~aQgvFfn~ff 215 (297)
+||++.|..-||. .++++ .-...-...| ++..|.+-.+..-=..-+.+- .++...| |=++-.+-.+. +.
T Consensus 2 VVAAIr~ItnGtyl~~irE~y~~~~~~~el~~l~~rl~k~~~~~ee~v~~vke~~nqe~~Df~ARrLvemaa~ii---~s 78 (131)
T 2oku_A 2 VVAAIRHITTGTYIARIREEYQQTEVKPELQPMKEALARMTDRAEALIAFVTEQKDQELLDFQARRLVEMTAHAV---FG 78 (131)
T ss_dssp HHHHTHHHHHTHHHHHHHHTGGGCCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HH
T ss_pred eeeeecccccccHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH---HH
Confidence 6899998887776 23444 3333334456 666666655555444444443 4554433 33333333222 22
Q ss_pred HHHH-------hChhhHHhhhhhhhhhHHHHHHHHHHHhcCCCCCC
Q 037339 216 LAYL-------ASPKLAHRIVGYLEEEAVNSYTEFLKDLENGSFEN 254 (297)
Q Consensus 216 ~~Yl-------iSPr~aHRfVGYLEEEAV~TYT~~Lkdid~G~l~n 254 (297)
++.+ +.-+.||.|+-|-|+|....|. ||+--+...|++
T Consensus 79 ~LLl~dA~k~elf~kSA~Vyv~~ae~ev~k~~~-~I~~f~~e~L~~ 123 (131)
T 2oku_A 79 HLLMLAANDDDSFRQSAEVYLRYGQAEQEKIDS-YVRAFRPEELTF 123 (131)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-HHHHCCGGGCC-
T ss_pred HHHHHHccHHHHHHHHHHHHHHHhHHHHHHHHH-HHHcCCHHHHHH
Confidence 2222 3467899999999999988775 666555555543
No 2
>3fbi_B Mediator of RNA polymerase II transcription subunit 31; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_B
Probab=19.82 E-value=83 Score=26.47 Aligned_cols=15 Identities=13% Similarity=0.375 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHHH
Q 037339 230 GYLEEEAVNSYTEFL 244 (297)
Q Consensus 230 GYLEEEAV~TYT~~L 244 (297)
||++.+|...|-++|
T Consensus 50 gy~~d~~FinYLkYL 64 (130)
T 3fbi_B 50 QIWKSPNFKNYLKYL 64 (130)
T ss_dssp GGGTSTHHHHHHHHG
T ss_pred ccccCHHHHHHHHHH
Confidence 899999999888776
No 3
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=11.71 E-value=88 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCccc
Q 037339 233 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHE 286 (297)
Q Consensus 233 EEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~ 286 (297)
|=|||.-|.+.+...+ |.-++.|+.+|++++++
T Consensus 30 EleAI~~Y~q~a~~~~---------------------d~~~k~vl~~i~~EEke 62 (95)
T 3k6c_A 30 ELEAVDLYNQRVNACK---------------------DKELKAILAHNRDEEKE 62 (95)
T ss_dssp HHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHHH
Confidence 4478888888877765 45578888888887764
No 4
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=11.27 E-value=1.2e+02 Score=19.82 Aligned_cols=22 Identities=41% Similarity=0.515 Sum_probs=16.2
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCC
Q 037339 228 IVGYLEEEAVNSYTEFLKDLENGSF 252 (297)
Q Consensus 228 fVGYLEEEAV~TYT~~Lkdid~G~l 252 (297)
+.-|||+.|.. +||+=+-+|+-
T Consensus 2 ~SkyLe~~aak---dFv~WL~ngk~ 23 (31)
T 3c5t_B 2 LSKQMEEEAVR---LFIEWLKNGGP 23 (31)
T ss_dssp HHHHHHHHHHH---HHHHHHHTTGG
T ss_pred HHHHHHHHHHH---HHHHHHHhCCC
Confidence 35699999998 66666666764
No 5
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=10.80 E-value=80 Score=20.11 Aligned_cols=11 Identities=27% Similarity=0.921 Sum_probs=7.4
Q ss_pred cccccccCCCc
Q 037339 79 IVSYWGIIPTK 89 (297)
Q Consensus 79 ~~~~~~~~~~~ 89 (297)
..+||+++|+.
T Consensus 4 p~~~WDvpP~G 14 (28)
T 1jmt_B 4 VRKYWDVPPPG 14 (28)
T ss_dssp --CCBTCCCTT
T ss_pred cccccCCCCCC
Confidence 45599998875
No 6
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*
Probab=10.71 E-value=2.1e+02 Score=21.74 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHHh
Q 037339 172 IKALL-EEAENERMHLMTFIEL 192 (297)
Q Consensus 172 I~tLL-eEAENERmHLltf~~l 192 (297)
++..| ++|.+|+.|...+.+.
T Consensus 40 l~~~f~~~a~eE~~Ha~~l~e~ 61 (155)
T 2fkz_A 40 LGKHEYHESIDEMKHADKLIKR 61 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 56666 9999999999988874
No 7
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=11.88 E-value=73 Score=23.14 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=16.7
Q ss_pred HhChhhHHhhhhhhhhhHHH
Q 037339 219 LASPKLAHRIVGYLEEEAVN 238 (297)
Q Consensus 219 liSPr~aHRfVGYLEEEAV~ 238 (297)
+=+|+.|+.|++||+..-|.
T Consensus 7 ~~N~~~Aq~f~dyL~s~gI~ 26 (69)
T 2lep_A 7 FANPRVAQAFVDYMATQGVI 26 (69)
Confidence 34799999999999987763
No 8
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=8.35 E-value=1.8e+02 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=34.2
Q ss_pred ccchhhhhhhccCCchHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHHHHHHHHHh
Q 037339 136 MCHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIEL 192 (297)
Q Consensus 136 ~~R~i~LETVA~VPGmV~gmlrHL~SLR~mkrd~gwI~tLLeEAENERmHLltf~~l 192 (297)
+++.+-.|..|..=|+..+.+. . -+.-.|.-+-+.++|.+|+.|...|.+.
T Consensus 11 LN~~l~~El~A~~~Y~~~a~~~--~----~~g~~~~a~~f~~~a~eE~~HA~~l~~~ 61 (159)
T 4am5_A 11 LNRGLRSELTAVSQYWLHYRML--E----DWGYKDLAKKWRAESIEEMAHADKFVER 61 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H----HHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--h----cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654432 1 1112255677889999999999988874
No 9
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=6.57 E-value=3.5e+02 Score=22.82 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=61.0
Q ss_pred cchhhhhhhccCCchHHHHHHHHHHHhcCCcC--cchHHHHHHHHHHHHHHHHHHHHhh---C-------C----chHHH
Q 037339 137 CHAMLLQTVAAVPGMVGGMLLHCKSLRKFEHS--GGWIKALLEEAENERMHLMTFIELA---R-------P----QWYER 200 (297)
Q Consensus 137 ~R~i~LETVA~VPGmV~gmlrHL~SLR~mkrd--~gwI~tLLeEAENERmHLltf~~l~---k-------P----~~~~R 200 (297)
+..+-.|+-|..=|+..+... ++. .|.=+-+.++|++|+.|-+.|.+.- + | +=..-
T Consensus 14 n~a~~~E~~A~~~Yl~~A~~a--------~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~gg~~~i~~~~p~~~~~s~~e 85 (191)
T 1lko_A 14 LTAFAGESQARNRYNYFGGQA--------KKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHA 85 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCCCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCcCCccccCCHHH
Confidence 455566766666555555432 222 2445677789999999999999863 2 1 11223
Q ss_pred HHHHHHHHH------HHHHHH-HHHHh-ChhhHHhhhhhhhhhHH--HHHHHHHHHhcCCCC
Q 037339 201 ALVFAVQGV------FFNAYF-LAYLA-SPKLAHRIVGYLEEEAV--NSYTEFLKDLENGSF 252 (297)
Q Consensus 201 ~lv~~aQgv------Ffn~ff-~~Yli-SPr~aHRfVGYLEEEAV--~TYT~~Lkdid~G~l 252 (297)
.|-..+++= .|+-|. ++--- .+.++.-|-.++++|.. ..|...|+.|+.|+.
T Consensus 86 ~l~~al~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~~~~ 147 (191)
T 1lko_A 86 NLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRV 147 (191)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 333333332 122221 11111 33455555566655554 469999999998875
No 10
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=6.56 E-value=5.8e+02 Score=22.06 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCC--CCCCcHHHHHHHhhcC
Q 037339 233 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRM--PPDSTLRDVVVDIQCQ 283 (297)
Q Consensus 233 EEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~L--p~datLrDVv~~I~~~ 283 (297)
.|+++ +.+++++|.++.+.-.+-|.++..-=++ .++.++.|+..-|..|
T Consensus 4 ~~~~~--~~~l~~~i~~~~~~LP~lp~~~~~l~~~~~~~~~~~~~la~~I~~D 54 (281)
T 3i7a_A 4 NEHQL--LVGLLKKLKDDALILPTLPEVAMRVQEVVGRPDSSLKQVAEIIGQD 54 (281)
T ss_dssp HHHHH--HHHHHHHHHTTCSCCCCCCHHHHHHHHHHTSTTCCHHHHHHHHHTC
T ss_pred cHHHH--HHHHHHHHHhCCCCCCCccHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 45555 6789999999988878888888876653 3467888887766543
Done!