Query 037339
Match_columns 297
No_of_seqs 168 out of 355
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 19:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037339.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037339hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jkva_ a.25.1.3 (A:) Manganes 16.6 14 0.001 31.9 0.1 53 139-192 23-76 (266)
2 d1uxya1 d.145.1.2 (A:3-200) Ur 15.3 13 0.00095 30.0 -0.5 16 141-156 101-116 (198)
3 d2doda1 a.159.2.1 (A:651-719) 12.5 1.2E+02 0.0088 20.3 4.2 34 233-284 9-42 (69)
4 d1zpya1 a.25.1.5 (A:4-94) Hypo 12.1 60 0.0044 23.9 2.5 33 233-286 27-59 (91)
5 d1qmga1 a.100.1.2 (A:308-595) 11.8 90 0.0065 27.0 4.0 84 150-253 160-243 (288)
6 d1hska1 d.145.1.2 (A:15-208) U 11.6 45 0.0033 26.2 1.8 19 139-157 117-135 (194)
7 d2ib0a1 a.25.1.9 (A:17-158) Hy 11.0 86 0.0063 22.7 3.2 28 221-248 79-106 (142)
8 d2k0bx1 a.5.2.1 (X:1-52) Seque 10.5 55 0.004 21.9 1.6 16 163-178 20-35 (52)
9 d2py8a1 a.280.1.1 (A:2-121) Ru 10.3 1.1E+02 0.0084 23.2 3.8 25 154-178 37-62 (120)
10 d2do1a1 a.140.2.1 (A:5-46) Nuc 10.0 39 0.0028 21.6 0.7 13 224-236 29-41 (42)
No 1
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}
Probab=16.63 E-value=14 Score=31.90 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.6
Q ss_pred hhhhhhhccCCchHHHHHHHHHHHhcCCcCcchH-HHHHHHHHHHHHHHHHHHHh
Q 037339 139 AMLLQTVAAVPGMVGGMLLHCKSLRKFEHSGGWI-KALLEEAENERMHLMTFIEL 192 (297)
Q Consensus 139 ~i~LETVA~VPGmV~gmlrHL~SLR~mkrd~gwI-~tLLeEAENERmHLltf~~l 192 (297)
.+++|-++|.=|=..++++-|.---.++ +.+.| ..|++=|--|..||-++-.+
T Consensus 23 ~~L~e~~GG~~GElsa~~qYl~Q~~~~~-~~~~~~dll~dIatEEl~HlEmvat~ 76 (266)
T d1jkva_ 23 RRLQESLGGQWGETTGMMSYLSQGWAST-GAEKYKDLLLDTGTEEMAHVEMISTM 76 (266)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998888888888766665 44556 56777889999999776554
No 2
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=13 Score=29.96 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=14.0
Q ss_pred hhhhhccCCchHHHHH
Q 037339 141 LLQTVAAVPGMVGGML 156 (297)
Q Consensus 141 ~LETVA~VPGmV~gml 156 (297)
=+|..+++||.|||.+
T Consensus 101 G~E~l~gIPGtvGGai 116 (198)
T d1uxya1 101 GLENLALIPGCVGSSP 116 (198)
T ss_dssp SCGGGTTCCSBGGGTT
T ss_pred cchhhcccccccchhh
Confidence 4899999999999865
No 3
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.47 E-value=1.2e+02 Score=20.32 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCc
Q 037339 233 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQG 284 (297)
Q Consensus 233 EEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~ 284 (297)
.|||+..|..+|++.+ +++++|..+++..|..|-
T Consensus 9 ~Ee~~~~Fk~LL~e~~------------------i~~~~~W~~~~~k~~~Dp 42 (69)
T d2doda1 9 LEARMKQFKDMLLERG------------------VSAFSTWEKELHKIVFDP 42 (69)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHcC------------------CCCCCCHHHHHHHhccCc
Confidence 5899999999999853 556677777777665553
No 4
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}
Probab=12.06 E-value=60 Score=23.86 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCcHHHHHHHhhcCccc
Q 037339 233 EEEAVNSYTEFLKDLENGSFENAPAPAIAIDYWRMPPDSTLRDVVVDIQCQGHE 286 (297)
Q Consensus 233 EEEAV~TYT~~Lkdid~G~l~n~pAP~IAi~YW~Lp~datLrDVv~~I~~~~~~ 286 (297)
|=|||.-|.+.....+ |..+++|+.+|++.+++
T Consensus 27 EleAI~~Y~q~a~~t~---------------------d~~~k~Vl~hia~EEke 59 (91)
T d1zpya1 27 ELEAVDLYNQRVNACK---------------------DKELKAILAHNRDEEKE 59 (91)
T ss_dssp HHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHHH
Confidence 4478888888877765 45678888888887654
No 5
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=11.76 E-value=90 Score=27.00 Aligned_cols=84 Identities=21% Similarity=0.151 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHhcCCcCcchHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 037339 150 GMVGGMLLHCKSLRKFEHSGGWIKALLEEAENERMHLMTFIELARPQWYERALVFAVQGVFFNAYFLAYLASPKLAHRIV 229 (297)
Q Consensus 150 GmV~gmlrHL~SLR~mkrd~gwI~tLLeEAENERmHLltf~~l~kP~~~~R~lv~~aQgvFfn~ff~~YliSPr~aHRfV 229 (297)
+.++.|..-.--||.- |.. -+||.||-.|-++.. .+|-..++-+.....-+=-.+=+-.|...||+-+-+.
T Consensus 160 ~~~~~~~a~~e~l~~~----G~~---~~~a~~E~~~E~~~~--~~~li~~~g~~~M~~~~S~TA~~G~~~~~prf~~~~~ 230 (288)
T d1qmga1 160 VYVALMMAQIEILRKK----GHS---YSEIINESVIEAVDS--LNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILS 230 (288)
T ss_dssp HHHHHHHHHHHHHHHH----TCC---HHHHHHHHTHHHHHT--THHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc----CCC---HHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHhhHHHHcccccchhhhhHHHH
Confidence 4455555544444432 211 289999999987632 2332222222111111111122337788898743221
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCC
Q 037339 230 GYLEEEAVNSYTEFLKDLENGSFE 253 (297)
Q Consensus 230 GYLEEEAV~TYT~~Lkdid~G~l~ 253 (297)
-+++++|++|...
T Consensus 231 -----------~~~l~~i~~G~~a 243 (288)
T d1qmga1 231 -----------QQALVAVDNGAPI 243 (288)
T ss_dssp -----------HTHHHHHHTTCCC
T ss_pred -----------HHHHHHhcCChHH
Confidence 2688999999874
No 6
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=11.55 E-value=45 Score=26.18 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.4
Q ss_pred hhhhhhhccCCchHHHHHH
Q 037339 139 AMLLQTVAAVPGMVGGMLL 157 (297)
Q Consensus 139 ~i~LETVA~VPGmV~gmlr 157 (297)
..-+|..+++||.|||.+.
T Consensus 117 l~g~e~~~gipgtvGGai~ 135 (194)
T d1hska1 117 LTGLEFACGIPGSIGGAVY 135 (194)
T ss_dssp EESCGGGTTCCSBHHHHHH
T ss_pred cccccccCCcceeehhhhh
Confidence 3478999999999999876
No 7
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.99 E-value=86 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.4
Q ss_pred ChhhHHhhhhhhhhhHHHHHHHHHHHhc
Q 037339 221 SPKLAHRIVGYLEEEAVNSYTEFLKDLE 248 (297)
Q Consensus 221 SPr~aHRfVGYLEEEAV~TYT~~Lkdid 248 (297)
++..+-++.--+|+.++.+|...++.++
T Consensus 79 d~~~~l~~a~~~E~~a~~~Y~~~~~~~~ 106 (142)
T d2ib0a1 79 SAADAARLAVRMENDGATAWRAVVEHAE 106 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999999999998875
No 8
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.50 E-value=55 Score=21.94 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=13.4
Q ss_pred hcCCcCcchHHHHHHH
Q 037339 163 RKFEHSGGWIKALLEE 178 (297)
Q Consensus 163 R~mkrd~gwI~tLLeE 178 (297)
.+|..++||+..||+-
T Consensus 20 MGFsneGGWLt~LL~s 35 (52)
T d2k0bx1 20 MGFSDEGGWLTRLLQT 35 (52)
T ss_dssp HTCCCSSSCHHHHHHH
T ss_pred cCCCCcchHHHHHHHH
Confidence 5788999999999863
No 9
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=10.31 E-value=1.1e+02 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCcCc-chHHHHHHH
Q 037339 154 GMLLHCKSLRKFEHSG-GWIKALLEE 178 (297)
Q Consensus 154 gmlrHL~SLR~mkrd~-gwI~tLLeE 178 (297)
..++|=.+-+..-+|| .||+.|+.|
T Consensus 37 ~~wL~~f~~~~~~~DGd~fl~~L~~e 62 (120)
T d2py8a1 37 AIWLNQYLASHSIQNGETFLTELLDE 62 (120)
T ss_dssp HHHHHHHHHHSCCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 4445555556555676 499999986
No 10
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.05 E-value=39 Score=21.65 Aligned_cols=13 Identities=62% Similarity=0.961 Sum_probs=9.5
Q ss_pred hHHhhhhhhhhhH
Q 037339 224 LAHRIVGYLEEEA 236 (297)
Q Consensus 224 ~aHRfVGYLEEEA 236 (297)
...|+-.|||||+
T Consensus 29 li~rlqayleeh~ 41 (42)
T d2do1a1 29 LIHRLQAYLEEHA 41 (42)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 3567788888875
Done!