Query 037340
Match_columns 1276
No_of_seqs 717 out of 5320
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-83 3.8E-88 781.0 53.1 657 26-720 18-693 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.2E-63 4.7E-68 645.2 51.8 352 139-526 134-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 9E-42 1.9E-46 381.0 17.1 279 191-476 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 7.2E-36 1.6E-40 391.5 23.1 530 545-1253 70-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.6E-34 3.4E-39 378.9 23.2 506 569-1253 69-584 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 2.2E-28 4.8E-33 252.9 -13.5 105 592-698 62-166 (565)
7 KOG0472 Leucine-rich repeat pr 99.9 1.7E-27 3.7E-32 246.4 -13.2 251 598-912 45-296 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.2E-24 4.7E-29 233.6 1.1 352 772-1253 92-452 (873)
9 KOG0618 Serine/threonine phosp 99.9 4.4E-25 9.4E-30 252.7 -7.2 440 596-1229 43-488 (1081)
10 KOG4194 Membrane glycoprotein 99.9 1.5E-23 3.2E-28 227.2 2.4 321 600-1024 80-408 (873)
11 KOG0444 Cytoskeletal regulator 99.9 3.1E-24 6.7E-29 233.3 -5.2 177 596-841 5-184 (1255)
12 KOG0618 Serine/threonine phosp 99.9 3.5E-24 7.5E-29 245.4 -5.6 117 562-685 38-154 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 1.7E-23 3.6E-28 227.7 -5.1 77 618-696 4-82 (1255)
14 PLN03210 Resistant to P. syrin 99.8 3.3E-19 7.1E-24 233.0 23.7 430 463-992 471-906 (1153)
15 KOG4237 Extracellular matrix p 99.6 1.2E-16 2.5E-21 166.7 -4.4 101 601-702 70-174 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 5.6E-14 1.2E-18 169.1 12.2 79 598-686 201-279 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 3.6E-13 7.8E-18 162.3 16.7 115 1099-1228 342-456 (788)
18 PRK04841 transcriptional regul 99.4 2.1E-11 4.5E-16 160.0 25.3 294 185-523 13-332 (903)
19 KOG4237 Extracellular matrix p 99.4 1.5E-14 3.2E-19 151.2 -3.9 264 590-871 82-357 (498)
20 KOG0617 Ras suppressor protein 99.4 2.2E-14 4.7E-19 131.9 -2.4 85 594-679 29-113 (264)
21 KOG0617 Ras suppressor protein 99.4 9.7E-15 2.1E-19 134.2 -5.5 154 562-725 26-180 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 2.5E-12 5.4E-17 156.4 10.5 244 598-965 178-426 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.3 7.1E-13 1.5E-17 163.7 5.5 259 565-847 519-787 (889)
24 PRK00411 cdc6 cell division co 99.3 5.9E-10 1.3E-14 130.4 26.0 302 184-502 28-358 (394)
25 PRK15370 E3 ubiquitin-protein 99.3 5E-12 1.1E-16 153.8 7.7 91 598-698 199-289 (754)
26 TIGR02928 orc1/cdc6 family rep 99.2 3.9E-09 8.6E-14 122.2 28.4 301 186-502 15-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.1 5.8E-09 1.3E-13 115.1 19.8 182 213-400 43-242 (269)
28 COG2909 MalT ATP-dependent tra 99.1 1.4E-08 3E-13 118.7 22.8 295 185-525 18-340 (894)
29 PF01637 Arch_ATPase: Archaeal 99.0 9.5E-10 2.1E-14 119.0 10.3 196 188-395 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.0 3.7E-09 7.9E-14 119.2 14.9 278 186-503 25-311 (328)
31 TIGR00635 ruvB Holliday juncti 99.0 6.5E-09 1.4E-13 116.8 15.2 278 186-503 4-290 (305)
32 PTZ00112 origin recognition co 98.9 2.5E-07 5.3E-12 109.1 23.9 301 185-503 754-1087(1164)
33 cd00116 LRR_RI Leucine-rich re 98.8 7.6E-10 1.7E-14 126.2 0.1 15 886-900 20-34 (319)
34 PF05729 NACHT: NACHT domain 98.8 1.6E-08 3.5E-13 102.6 9.6 142 214-362 1-162 (166)
35 PF14580 LRR_9: Leucine-rich r 98.8 6.5E-09 1.4E-13 102.5 4.4 130 564-703 14-151 (175)
36 KOG0532 Leucine-rich repeat (L 98.7 6.1E-10 1.3E-14 122.7 -4.6 177 591-840 91-270 (722)
37 cd00116 LRR_RI Leucine-rich re 98.7 1.4E-09 3.1E-14 123.9 -2.0 86 594-679 19-119 (319)
38 KOG4341 F-box protein containi 98.7 3.3E-10 7.1E-15 120.4 -8.2 137 1098-1255 293-441 (483)
39 KOG3207 Beta-tubulin folding c 98.6 6.1E-09 1.3E-13 111.6 -0.7 37 1191-1228 299-337 (505)
40 PRK06893 DNA replication initi 98.6 1.7E-07 3.7E-12 99.3 10.1 156 213-400 39-207 (229)
41 COG3899 Predicted ATPase [Gene 98.6 1E-06 2.2E-11 110.4 18.2 308 188-520 2-383 (849)
42 COG4886 Leucine-rich repeat (L 98.6 4.5E-08 9.7E-13 114.8 5.3 107 594-702 112-219 (394)
43 PRK15386 type III secretion pr 98.6 1.8E-07 3.9E-12 103.4 9.5 94 1003-1155 48-141 (426)
44 PTZ00202 tuzin; Provisional 98.6 9.1E-06 2E-10 89.1 22.1 170 181-362 257-433 (550)
45 PRK13342 recombination factor 98.6 1.2E-06 2.6E-11 102.0 16.6 178 186-398 12-198 (413)
46 COG2256 MGS1 ATPase related to 98.6 4.9E-07 1.1E-11 97.0 11.8 156 211-393 46-209 (436)
47 KOG4341 F-box protein containi 98.5 1.7E-09 3.6E-14 115.2 -7.3 189 808-1022 139-335 (483)
48 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.2E-13 107.2 0.4 156 1095-1252 142-313 (505)
49 PF13401 AAA_22: AAA domain; P 98.5 5.4E-07 1.2E-11 86.9 9.1 117 213-332 4-125 (131)
50 COG3903 Predicted ATPase [Gene 98.4 6E-07 1.3E-11 97.3 8.8 291 212-523 13-314 (414)
51 KOG0532 Leucine-rich repeat (L 98.4 1.7E-08 3.7E-13 111.6 -3.1 170 598-841 75-245 (722)
52 PRK05564 DNA polymerase III su 98.4 5.5E-06 1.2E-10 92.8 15.8 178 186-394 4-188 (313)
53 PF14580 LRR_9: Leucine-rich r 98.4 1E-07 2.2E-12 94.1 1.4 102 594-699 15-120 (175)
54 TIGR03420 DnaA_homol_Hda DnaA 98.3 3.4E-06 7.4E-11 90.2 12.4 171 191-399 22-204 (226)
55 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 96.2 0.8 128 565-702 280-409 (490)
56 PF13855 LRR_8: Leucine rich r 98.3 5.4E-07 1.2E-11 72.7 4.3 57 598-654 1-59 (61)
57 PRK04195 replication factor C 98.3 1.9E-05 4.1E-10 94.0 19.0 247 186-475 14-271 (482)
58 PRK07003 DNA polymerase III su 98.3 1.8E-05 3.9E-10 93.7 18.2 196 186-398 16-223 (830)
59 PF13191 AAA_16: AAA ATPase do 98.3 1.1E-06 2.4E-11 90.8 7.6 47 187-236 1-47 (185)
60 cd00009 AAA The AAA+ (ATPases 98.3 3.1E-06 6.7E-11 84.0 10.6 125 189-334 1-131 (151)
61 PF05496 RuvB_N: Holliday junc 98.3 5.4E-06 1.2E-10 83.4 11.9 182 186-401 24-226 (233)
62 PRK14961 DNA polymerase III su 98.3 1.1E-05 2.5E-10 91.9 16.3 191 186-392 16-216 (363)
63 PRK12402 replication factor C 98.3 8.5E-06 1.8E-10 93.4 15.2 196 186-394 15-224 (337)
64 KOG2028 ATPase related to the 98.3 8.4E-06 1.8E-10 85.5 12.6 158 211-391 160-331 (554)
65 PRK14960 DNA polymerase III su 98.3 9.9E-06 2.1E-10 94.8 14.5 192 186-393 15-216 (702)
66 PRK15386 type III secretion pr 98.3 2.4E-06 5.3E-11 94.7 9.0 154 1080-1254 57-214 (426)
67 PLN03025 replication factor C 98.3 1E-05 2.3E-10 90.8 14.2 181 186-392 13-196 (319)
68 COG1474 CDC6 Cdc6-related prot 98.3 2.9E-05 6.4E-10 87.2 17.5 207 187-399 18-241 (366)
69 cd01128 rho_factor Transcripti 98.3 1.3E-06 2.8E-11 92.3 6.2 91 212-303 15-113 (249)
70 PRK14963 DNA polymerase III su 98.2 2.7E-06 5.8E-11 99.9 9.4 204 186-399 14-221 (504)
71 PRK14949 DNA polymerase III su 98.2 1.3E-05 2.7E-10 97.1 14.8 195 186-396 16-221 (944)
72 PF13173 AAA_14: AAA domain 98.2 1.6E-06 3.4E-11 82.7 5.9 120 213-355 2-127 (128)
73 COG4886 Leucine-rich repeat (L 98.2 6.6E-07 1.4E-11 104.9 3.8 126 565-698 112-238 (394)
74 TIGR02903 spore_lon_C ATP-depe 98.2 1E-05 2.2E-10 98.1 13.8 203 186-398 154-397 (615)
75 KOG1259 Nischarin, modulator o 98.2 2.2E-07 4.9E-12 94.3 -0.5 106 594-703 280-385 (490)
76 PRK12323 DNA polymerase III su 98.2 2.2E-05 4.7E-10 91.8 15.4 197 186-394 16-223 (700)
77 PRK13341 recombination factor 98.2 9.6E-06 2.1E-10 99.0 12.0 172 186-391 28-212 (725)
78 PRK14956 DNA polymerase III su 98.2 1.5E-05 3.2E-10 91.0 12.5 199 186-396 18-223 (484)
79 PRK00440 rfc replication facto 98.2 2.8E-05 6E-10 88.4 15.1 180 186-393 17-200 (319)
80 PRK08727 hypothetical protein; 98.2 2.7E-05 5.8E-10 82.8 13.9 149 213-393 41-201 (233)
81 PLN03150 hypothetical protein; 98.2 1.9E-06 4.2E-11 105.4 5.8 93 599-691 419-513 (623)
82 PRK14957 DNA polymerase III su 98.2 3.1E-05 6.7E-10 91.0 15.4 187 186-400 16-225 (546)
83 PRK06645 DNA polymerase III su 98.1 3E-05 6.5E-10 90.7 14.6 198 186-396 21-230 (507)
84 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3.1E-12 95.8 -4.0 62 782-843 286-351 (419)
85 TIGR00678 holB DNA polymerase 98.1 5.9E-05 1.3E-09 77.7 14.7 90 292-391 95-186 (188)
86 PRK14962 DNA polymerase III su 98.1 4.3E-05 9.4E-10 89.1 15.0 183 186-400 14-223 (472)
87 PRK08691 DNA polymerase III su 98.1 3.2E-05 6.9E-10 91.7 13.7 194 186-396 16-221 (709)
88 PRK07940 DNA polymerase III su 98.1 6.5E-05 1.4E-09 85.4 15.7 181 186-396 5-213 (394)
89 PRK07471 DNA polymerase III su 98.1 9.3E-05 2E-09 83.4 16.6 198 185-396 18-238 (365)
90 PF13855 LRR_8: Leucine rich r 98.1 3.4E-06 7.4E-11 68.0 3.7 58 621-679 1-60 (61)
91 TIGR02397 dnaX_nterm DNA polym 98.1 7.9E-05 1.7E-09 86.0 16.3 184 186-397 14-219 (355)
92 PRK09376 rho transcription ter 98.1 9.6E-06 2.1E-10 88.9 7.9 91 212-304 168-267 (416)
93 PRK08084 DNA replication initi 98.0 5.6E-05 1.2E-09 80.4 13.4 155 213-399 45-212 (235)
94 PRK14964 DNA polymerase III su 98.0 7.5E-05 1.6E-09 86.5 15.2 180 186-392 13-213 (491)
95 PLN03150 hypothetical protein; 98.0 5.1E-06 1.1E-10 101.8 6.0 107 571-682 420-529 (623)
96 PRK14951 DNA polymerase III su 98.0 7.3E-05 1.6E-09 89.2 15.3 196 186-394 16-223 (618)
97 PRK05896 DNA polymerase III su 98.0 6.4E-05 1.4E-09 88.4 14.5 197 186-398 16-223 (605)
98 PRK09112 DNA polymerase III su 98.0 0.00012 2.6E-09 82.0 16.0 197 184-397 21-241 (351)
99 PRK07994 DNA polymerase III su 98.0 6.5E-05 1.4E-09 89.8 14.0 195 186-396 16-221 (647)
100 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 60.7 3.1 39 599-637 2-40 (44)
101 PRK14958 DNA polymerase III su 98.0 8.5E-05 1.8E-09 87.7 14.7 180 186-396 16-221 (509)
102 PRK08903 DnaA regulatory inact 98.0 7.2E-05 1.6E-09 79.8 13.0 153 212-400 41-203 (227)
103 TIGR01242 26Sp45 26S proteasom 98.0 1.4E-05 3E-10 91.7 7.8 180 185-390 121-328 (364)
104 PRK14969 DNA polymerase III su 98.0 0.00012 2.7E-09 87.1 15.8 183 186-399 16-224 (527)
105 PRK09087 hypothetical protein; 98.0 8E-05 1.7E-09 78.3 12.5 142 213-397 44-196 (226)
106 PF05621 TniB: Bacterial TniB 97.9 0.00017 3.6E-09 76.7 14.6 202 187-393 35-258 (302)
107 PRK14955 DNA polymerase III su 97.9 7.9E-05 1.7E-09 86.2 13.1 202 186-397 16-230 (397)
108 PF00308 Bac_DnaA: Bacterial d 97.9 0.00015 3.2E-09 76.1 13.6 184 187-396 10-208 (219)
109 KOG2227 Pre-initiation complex 97.9 0.00022 4.8E-09 78.4 15.1 214 184-400 148-376 (529)
110 KOG1909 Ran GTPase-activating 97.9 1.1E-06 2.4E-11 92.2 -2.3 87 1094-1181 208-308 (382)
111 PRK05642 DNA replication initi 97.9 9.7E-05 2.1E-09 78.5 12.3 156 213-400 45-212 (234)
112 TIGR00767 rho transcription te 97.9 1.9E-05 4.2E-10 87.1 6.7 92 212-304 167-266 (415)
113 KOG0531 Protein phosphatase 1, 97.9 3.6E-06 7.7E-11 98.6 0.9 104 592-699 89-193 (414)
114 KOG1909 Ran GTPase-activating 97.9 1E-06 2.2E-11 92.5 -3.3 90 590-679 22-131 (382)
115 KOG2120 SCF ubiquitin ligase, 97.9 3.2E-07 7E-12 93.4 -6.8 153 1098-1250 209-373 (419)
116 COG2255 RuvB Holliday junction 97.9 0.00024 5.2E-09 73.0 13.5 175 186-394 26-221 (332)
117 PRK14959 DNA polymerase III su 97.9 0.0002 4.3E-09 84.8 14.7 199 186-400 16-225 (624)
118 PRK09111 DNA polymerase III su 97.9 0.00021 4.6E-09 85.6 15.2 197 186-395 24-232 (598)
119 PRK14970 DNA polymerase III su 97.8 0.00031 6.8E-09 81.0 16.1 181 186-398 17-212 (367)
120 KOG0989 Replication factor C, 97.8 6.2E-05 1.4E-09 78.1 8.7 183 186-390 36-224 (346)
121 PRK14952 DNA polymerase III su 97.8 0.00034 7.4E-09 83.4 16.0 199 186-400 13-224 (584)
122 PF14516 AAA_35: AAA-like doma 97.8 0.0037 8E-08 70.3 23.2 202 185-403 10-246 (331)
123 PRK14087 dnaA chromosomal repl 97.8 0.00041 8.8E-09 81.0 15.6 167 213-398 141-321 (450)
124 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.6E-10 58.1 2.6 39 621-660 1-39 (44)
125 PRK14950 DNA polymerase III su 97.8 0.0004 8.7E-09 84.4 16.0 196 186-396 16-221 (585)
126 PRK14954 DNA polymerase III su 97.7 0.00019 4.2E-09 86.1 12.5 203 186-397 16-230 (620)
127 TIGR02881 spore_V_K stage V sp 97.7 0.00026 5.6E-09 77.0 12.6 159 187-364 7-192 (261)
128 PRK07764 DNA polymerase III su 97.7 0.00041 9E-09 86.1 15.6 197 186-399 15-225 (824)
129 PRK06305 DNA polymerase III su 97.7 0.00057 1.2E-08 79.9 15.7 187 186-398 17-225 (451)
130 CHL00181 cbbX CbbX; Provisiona 97.7 0.00069 1.5E-08 74.1 15.4 136 213-365 59-211 (287)
131 PRK07133 DNA polymerase III su 97.7 0.00062 1.3E-08 82.0 16.1 194 186-398 18-222 (725)
132 PRK08451 DNA polymerase III su 97.7 0.00075 1.6E-08 79.1 15.8 195 186-396 14-218 (535)
133 PRK14953 DNA polymerase III su 97.7 0.001 2.2E-08 78.2 16.9 183 186-396 16-220 (486)
134 KOG0531 Protein phosphatase 1, 97.7 7E-06 1.5E-10 96.2 -1.0 104 596-703 70-173 (414)
135 KOG2543 Origin recognition com 97.7 0.00018 3.9E-09 77.0 9.5 168 185-362 5-192 (438)
136 PHA02544 44 clamp loader, smal 97.7 0.00024 5.3E-09 80.3 11.5 147 186-360 21-170 (316)
137 PRK14948 DNA polymerase III su 97.6 0.00087 1.9E-08 81.1 16.2 196 186-395 16-221 (620)
138 PRK03992 proteasome-activating 97.6 0.00013 2.8E-09 83.9 8.5 179 185-389 130-336 (389)
139 TIGR02639 ClpA ATP-dependent C 97.6 0.00029 6.3E-09 88.3 12.3 154 186-363 182-358 (731)
140 PRK11331 5-methylcytosine-spec 97.6 0.00017 3.7E-09 81.3 8.8 119 186-317 175-297 (459)
141 PRK06620 hypothetical protein; 97.6 0.00088 1.9E-08 69.8 13.5 136 214-394 45-187 (214)
142 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00015 3.2E-09 91.3 9.2 153 186-362 187-362 (852)
143 PRK14971 DNA polymerase III su 97.6 0.001 2.2E-08 80.5 16.0 179 186-396 17-223 (614)
144 TIGR00362 DnaA chromosomal rep 97.6 0.00097 2.1E-08 77.9 15.2 159 213-394 136-308 (405)
145 TIGR02880 cbbX_cfxQ probable R 97.6 0.00074 1.6E-08 74.0 12.9 134 214-364 59-209 (284)
146 KOG4579 Leucine-rich repeat (L 97.5 9.6E-06 2.1E-10 73.1 -2.1 85 594-679 49-134 (177)
147 PRK12422 chromosomal replicati 97.5 0.0026 5.7E-08 74.0 16.8 155 212-389 140-306 (445)
148 PRK06647 DNA polymerase III su 97.5 0.0024 5.2E-08 76.4 16.1 192 186-393 16-217 (563)
149 PF05673 DUF815: Protein of un 97.4 0.0043 9.4E-08 63.9 15.4 125 183-335 24-153 (249)
150 PRK14965 DNA polymerase III su 97.4 0.0019 4.1E-08 78.1 15.2 198 186-399 16-224 (576)
151 PRK05707 DNA polymerase III su 97.4 0.0025 5.4E-08 71.0 15.0 97 292-396 105-203 (328)
152 KOG1859 Leucine-rich repeat pr 97.4 2.1E-06 4.5E-11 98.0 -9.5 39 977-1018 82-120 (1096)
153 PRK07399 DNA polymerase III su 97.4 0.003 6.4E-08 70.0 15.2 196 186-395 4-220 (314)
154 COG0593 DnaA ATPase involved i 97.4 0.0014 3E-08 73.4 12.5 138 212-367 112-261 (408)
155 CHL00095 clpC Clp protease ATP 97.4 0.00064 1.4E-08 86.4 11.2 156 186-361 179-352 (821)
156 PRK14088 dnaA chromosomal repl 97.4 0.0017 3.7E-08 75.8 13.7 159 213-393 130-302 (440)
157 PTZ00361 26 proteosome regulat 97.4 0.00042 9E-09 79.6 8.3 158 186-364 183-368 (438)
158 PRK05563 DNA polymerase III su 97.4 0.0035 7.7E-08 75.4 16.2 192 186-393 16-217 (559)
159 PRK00149 dnaA chromosomal repl 97.3 0.0013 2.8E-08 77.8 12.3 159 212-393 147-319 (450)
160 PRK10787 DNA-binding ATP-depen 97.3 0.0022 4.8E-08 80.0 14.7 51 185-235 321-371 (784)
161 PF00004 AAA: ATPase family as 97.3 0.00038 8.1E-09 67.1 6.4 21 216-236 1-21 (132)
162 KOG4579 Leucine-rich repeat (L 97.3 5.2E-05 1.1E-09 68.5 0.2 99 598-698 27-129 (177)
163 TIGR03346 chaperone_ClpB ATP-d 97.3 0.002 4.2E-08 82.3 14.2 156 186-363 173-349 (852)
164 PRK14086 dnaA chromosomal repl 97.3 0.0032 6.9E-08 74.5 14.6 158 213-393 314-485 (617)
165 PRK11034 clpA ATP-dependent Cl 97.3 0.00056 1.2E-08 84.4 8.5 156 186-363 186-362 (758)
166 TIGR03689 pup_AAA proteasome A 97.2 0.0029 6.4E-08 73.8 13.3 166 186-364 182-379 (512)
167 KOG2004 Mitochondrial ATP-depe 97.2 0.0054 1.2E-07 71.3 14.9 105 185-302 410-514 (906)
168 KOG2982 Uncharacterized conser 97.2 9.6E-05 2.1E-09 75.8 0.9 84 596-679 69-157 (418)
169 PTZ00454 26S protease regulato 97.2 0.0012 2.5E-08 75.6 9.6 159 185-364 144-330 (398)
170 KOG0991 Replication factor C, 97.2 0.0022 4.7E-08 63.7 9.8 44 186-235 27-70 (333)
171 TIGR00763 lon ATP-dependent pr 97.2 0.0033 7.2E-08 79.4 14.3 51 185-235 319-369 (775)
172 TIGR00602 rad24 checkpoint pro 97.2 0.0017 3.6E-08 78.0 10.9 51 185-236 83-133 (637)
173 COG5238 RNA1 Ran GTPase-activa 97.2 4.4E-05 9.4E-10 77.2 -1.9 93 590-683 22-134 (388)
174 smart00382 AAA ATPases associa 97.2 0.0015 3.2E-08 64.0 9.1 87 214-305 3-90 (148)
175 KOG3665 ZYG-1-like serine/thre 97.2 0.00026 5.6E-09 86.4 3.9 109 566-679 145-261 (699)
176 PRK08116 hypothetical protein; 97.2 0.0011 2.4E-08 71.7 8.3 103 214-332 115-220 (268)
177 PRK10865 protein disaggregatio 97.1 0.0033 7.2E-08 79.8 13.4 45 186-236 178-222 (857)
178 PRK10536 hypothetical protein; 97.1 0.0085 1.8E-07 62.7 13.5 131 186-332 55-212 (262)
179 KOG1859 Leucine-rich repeat pr 97.1 3.2E-05 6.9E-10 88.7 -4.5 103 594-701 183-288 (1096)
180 COG3267 ExeA Type II secretory 97.1 0.019 4.1E-07 59.0 15.1 180 212-399 50-248 (269)
181 CHL00176 ftsH cell division pr 97.1 0.0045 9.8E-08 75.1 12.9 177 186-388 183-386 (638)
182 COG0466 Lon ATP-dependent Lon 97.0 0.0046 9.9E-08 72.4 12.0 165 185-363 322-508 (782)
183 PRK06090 DNA polymerase III su 97.0 0.046 1E-06 60.3 18.6 177 194-396 11-201 (319)
184 PRK08058 DNA polymerase III su 96.9 0.011 2.5E-07 66.3 14.1 163 188-362 7-181 (329)
185 PRK08769 DNA polymerase III su 96.9 0.023 4.9E-07 62.7 16.0 96 292-397 112-209 (319)
186 KOG1644 U2-associated snRNP A' 96.9 0.00094 2E-08 65.2 4.3 101 599-702 43-150 (233)
187 PF04665 Pox_A32: Poxvirus A32 96.9 0.0014 3E-08 68.1 5.8 35 215-251 15-49 (241)
188 TIGR01241 FtsH_fam ATP-depende 96.9 0.01 2.3E-07 71.1 14.1 179 185-389 54-259 (495)
189 COG1222 RPT1 ATP-dependent 26S 96.9 0.011 2.5E-07 63.3 12.2 188 186-400 151-371 (406)
190 KOG0741 AAA+-type ATPase [Post 96.9 0.024 5.2E-07 63.6 15.0 149 211-386 536-704 (744)
191 PRK08118 topology modulation p 96.9 0.0005 1.1E-08 68.6 2.0 34 215-248 3-37 (167)
192 KOG1644 U2-associated snRNP A' 96.8 0.0016 3.6E-08 63.6 5.2 101 1099-1202 42-149 (233)
193 COG1373 Predicted ATPase (AAA+ 96.8 0.0088 1.9E-07 68.9 11.8 120 215-360 39-164 (398)
194 PRK13531 regulatory ATPase Rav 96.8 0.0048 1E-07 70.6 9.2 41 187-235 21-61 (498)
195 PRK08181 transposase; Validate 96.8 0.0034 7.4E-08 67.4 7.6 100 214-332 107-208 (269)
196 PRK08939 primosomal protein Dn 96.8 0.0035 7.6E-08 69.1 7.8 122 190-332 135-260 (306)
197 PRK06871 DNA polymerase III su 96.7 0.039 8.4E-07 61.0 15.8 175 195-393 11-200 (325)
198 PF13177 DNA_pol3_delta2: DNA 96.7 0.012 2.6E-07 58.4 10.7 120 190-334 1-143 (162)
199 TIGR02640 gas_vesic_GvpN gas v 96.7 0.017 3.6E-07 62.8 12.6 55 193-260 9-63 (262)
200 KOG3665 ZYG-1-like serine/thre 96.6 0.0014 3E-08 80.2 4.1 81 621-703 122-206 (699)
201 PRK07952 DNA replication prote 96.6 0.007 1.5E-07 64.0 8.7 103 213-332 99-204 (244)
202 PRK09361 radB DNA repair and r 96.6 0.0084 1.8E-07 63.8 9.4 47 211-260 21-67 (225)
203 smart00763 AAA_PrkA PrkA AAA d 96.6 0.0025 5.4E-08 70.2 5.1 50 187-236 52-101 (361)
204 COG1223 Predicted ATPase (AAA+ 96.6 0.014 3.1E-07 59.2 9.7 158 186-364 121-298 (368)
205 PF10443 RNA12: RNA12 protein; 96.5 0.066 1.4E-06 60.0 15.7 201 191-407 1-289 (431)
206 PRK07993 DNA polymerase III su 96.5 0.072 1.6E-06 59.7 16.2 178 195-394 11-202 (334)
207 PF01695 IstB_IS21: IstB-like 96.5 0.0026 5.7E-08 64.1 4.4 100 213-332 47-149 (178)
208 PRK06526 transposase; Provisio 96.5 0.0047 1E-07 66.1 6.2 24 213-236 98-121 (254)
209 PRK09183 transposase/IS protei 96.5 0.0066 1.4E-07 65.5 7.3 23 213-235 102-124 (259)
210 PF02562 PhoH: PhoH-like prote 96.4 0.018 4E-07 58.6 9.9 131 190-333 4-156 (205)
211 PRK11889 flhF flagellar biosyn 96.4 0.025 5.4E-07 62.8 11.4 90 211-304 239-331 (436)
212 PRK12608 transcription termina 96.4 0.014 3.1E-07 64.6 9.6 102 194-302 119-229 (380)
213 TIGR02237 recomb_radB DNA repa 96.4 0.0094 2E-07 62.7 8.0 49 211-262 10-58 (209)
214 PRK06921 hypothetical protein; 96.4 0.0085 1.8E-07 64.8 7.5 38 212-251 116-154 (266)
215 TIGR03346 chaperone_ClpB ATP-d 96.4 0.014 3E-07 74.7 10.6 137 186-332 565-717 (852)
216 KOG1947 Leucine rich repeat pr 96.4 0.00024 5.2E-09 86.4 -5.0 33 931-963 187-223 (482)
217 TIGR03345 VI_ClpV1 type VI sec 96.3 0.012 2.6E-07 74.6 9.7 139 185-332 565-718 (852)
218 KOG2982 Uncharacterized conser 96.3 0.00092 2E-08 68.9 -0.1 83 931-1017 70-156 (418)
219 PRK10865 protein disaggregatio 96.3 0.015 3.3E-07 73.9 10.7 125 185-318 567-695 (857)
220 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0089 1.9E-07 64.2 7.6 50 211-260 17-70 (235)
221 COG0470 HolB ATPase involved i 96.3 0.019 4.2E-07 65.3 10.7 142 187-349 2-167 (325)
222 PF07693 KAP_NTPase: KAP famil 96.3 0.086 1.9E-06 60.0 15.7 42 192-236 2-43 (325)
223 PRK12377 putative replication 96.3 0.013 2.9E-07 62.1 8.2 102 213-332 101-205 (248)
224 COG2812 DnaX DNA polymerase II 96.3 0.014 3E-07 67.8 8.8 188 186-390 16-214 (515)
225 PF00448 SRP54: SRP54-type pro 96.2 0.025 5.4E-07 58.0 9.8 88 213-302 1-92 (196)
226 PRK06964 DNA polymerase III su 96.2 0.088 1.9E-06 58.7 14.6 93 292-396 131-225 (342)
227 KOG1514 Origin recognition com 96.2 0.16 3.6E-06 59.7 16.9 136 187-330 397-546 (767)
228 PRK04296 thymidine kinase; Pro 96.2 0.0082 1.8E-07 61.5 6.1 115 214-335 3-118 (190)
229 CHL00195 ycf46 Ycf46; Provisio 96.2 0.023 5E-07 66.7 10.1 159 186-365 228-407 (489)
230 PF07728 AAA_5: AAA domain (dy 96.1 0.003 6.4E-08 61.4 2.4 87 216-316 2-88 (139)
231 PTZ00494 tuzin-like protein; P 96.1 0.79 1.7E-05 51.2 20.6 168 182-362 367-543 (664)
232 KOG0733 Nuclear AAA ATPase (VC 96.1 0.1 2.3E-06 59.9 14.4 98 186-304 190-293 (802)
233 TIGR02639 ClpA ATP-dependent C 96.1 0.023 5.1E-07 71.5 10.6 122 185-319 453-579 (731)
234 TIGR02012 tigrfam_recA protein 96.1 0.013 2.9E-07 64.2 7.3 86 211-303 53-143 (321)
235 COG2607 Predicted ATPase (AAA+ 96.1 0.023 4.9E-07 57.4 8.1 121 184-332 58-182 (287)
236 cd00983 recA RecA is a bacter 96.1 0.012 2.6E-07 64.6 6.8 85 211-302 53-142 (325)
237 CHL00095 clpC Clp protease ATP 96.1 0.022 4.9E-07 72.6 10.3 138 185-332 508-661 (821)
238 COG0542 clpA ATP-binding subun 96.0 0.018 3.9E-07 69.7 8.6 123 185-320 490-620 (786)
239 TIGR01243 CDC48 AAA family ATP 96.0 0.023 5E-07 71.8 10.1 179 186-390 178-381 (733)
240 cd01393 recA_like RecA is a b 96.0 0.039 8.5E-07 58.8 10.5 90 211-303 17-124 (226)
241 PF13207 AAA_17: AAA domain; P 96.0 0.0048 1.1E-07 58.2 3.1 21 215-235 1-21 (121)
242 PRK06835 DNA replication prote 96.0 0.0058 1.3E-07 67.9 4.1 102 214-332 184-288 (329)
243 PRK07261 topology modulation p 96.0 0.011 2.3E-07 59.5 5.6 66 215-304 2-68 (171)
244 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.6E-08 38.0 1.1 19 623-641 2-20 (22)
245 PRK06696 uridine kinase; Valid 95.9 0.0085 1.9E-07 63.4 4.8 43 190-235 2-44 (223)
246 PRK05541 adenylylsulfate kinas 95.9 0.015 3.2E-07 59.1 6.4 37 211-249 5-41 (176)
247 KOG2123 Uncharacterized conser 95.9 0.00043 9.2E-09 70.6 -4.9 80 1099-1181 19-98 (388)
248 PF13604 AAA_30: AAA domain; P 95.9 0.035 7.6E-07 57.2 9.0 107 213-332 18-130 (196)
249 TIGR01650 PD_CobS cobaltochela 95.9 0.18 3.8E-06 55.4 14.5 59 186-257 45-103 (327)
250 KOG2739 Leucine-rich acidic nu 95.9 0.0037 8.1E-08 64.1 1.7 101 599-703 44-154 (260)
251 cd01394 radB RadB. The archaea 95.9 0.025 5.5E-07 59.8 8.2 44 211-256 17-60 (218)
252 TIGR01243 CDC48 AAA family ATP 95.9 0.056 1.2E-06 68.4 12.5 179 186-390 453-657 (733)
253 PF08423 Rad51: Rad51; InterP 95.9 0.025 5.4E-07 60.8 8.1 56 212-268 37-96 (256)
254 cd00561 CobA_CobO_BtuR ATP:cor 95.9 0.031 6.6E-07 54.4 7.8 117 214-333 3-138 (159)
255 PRK09354 recA recombinase A; P 95.8 0.017 3.7E-07 63.9 6.6 86 211-303 58-148 (349)
256 PRK15455 PrkA family serine pr 95.8 0.0071 1.5E-07 70.0 3.5 49 187-235 77-125 (644)
257 KOG0731 AAA+-type ATPase conta 95.7 0.14 3E-06 61.9 14.0 184 185-393 310-521 (774)
258 cd01133 F1-ATPase_beta F1 ATP 95.7 0.02 4.4E-07 61.0 6.5 89 212-302 68-172 (274)
259 KOG0733 Nuclear AAA ATPase (VC 95.7 0.091 2E-06 60.4 11.8 155 213-390 545-718 (802)
260 COG1484 DnaC DNA replication p 95.7 0.03 6.6E-07 60.0 7.8 81 212-310 104-184 (254)
261 PHA02244 ATPase-like protein 95.7 0.098 2.1E-06 58.0 11.6 21 215-235 121-141 (383)
262 PF00158 Sigma54_activat: Sigm 95.7 0.03 6.6E-07 55.7 7.2 45 188-236 1-45 (168)
263 PRK11034 clpA ATP-dependent Cl 95.7 0.038 8.2E-07 68.6 9.5 120 186-318 458-582 (758)
264 PRK08699 DNA polymerase III su 95.6 0.078 1.7E-06 59.1 11.1 71 292-362 112-184 (325)
265 COG0468 RecA RecA/RadA recombi 95.6 0.047 1E-06 58.5 8.6 89 211-302 58-150 (279)
266 cd03214 ABC_Iron-Siderophores_ 95.6 0.087 1.9E-06 53.7 10.3 123 212-338 24-163 (180)
267 TIGR02902 spore_lonB ATP-depen 95.6 0.033 7.1E-07 67.0 8.3 43 187-235 66-108 (531)
268 KOG2123 Uncharacterized conser 95.5 0.00096 2.1E-08 68.1 -3.9 80 597-679 18-99 (388)
269 TIGR03499 FlhF flagellar biosy 95.5 0.047 1E-06 59.9 8.6 88 212-302 193-281 (282)
270 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.088 1.9E-06 51.2 9.6 107 212-338 25-132 (144)
271 PRK04132 replication factor C 95.5 0.17 3.6E-06 63.1 14.0 153 221-394 574-729 (846)
272 PF00560 LRR_1: Leucine Rich R 95.5 0.0072 1.6E-07 36.6 1.2 22 599-620 1-22 (22)
273 cd03247 ABCC_cytochrome_bd The 95.5 0.076 1.7E-06 54.0 9.5 128 212-347 27-169 (178)
274 COG0542 clpA ATP-binding subun 95.4 0.034 7.3E-07 67.5 7.8 154 187-363 171-346 (786)
275 TIGR02238 recomb_DMC1 meiotic 95.4 0.036 7.8E-07 61.3 7.5 59 211-270 94-156 (313)
276 COG1618 Predicted nucleotide k 95.4 0.015 3.2E-07 55.0 3.7 22 214-235 6-27 (179)
277 cd03238 ABC_UvrA The excision 95.4 0.079 1.7E-06 53.2 9.2 124 212-347 20-161 (176)
278 KOG2228 Origin recognition com 95.4 0.13 2.9E-06 54.8 10.8 172 187-363 25-219 (408)
279 KOG0728 26S proteasome regulat 95.3 0.25 5.5E-06 50.0 12.0 190 188-399 148-366 (404)
280 cd01131 PilT Pilus retraction 95.3 0.033 7.2E-07 57.6 6.4 110 214-336 2-112 (198)
281 KOG2739 Leucine-rich acidic nu 95.3 0.013 2.9E-07 60.2 3.3 85 1119-1205 39-128 (260)
282 cd03228 ABCC_MRP_Like The MRP 95.3 0.1 2.3E-06 52.6 9.8 120 212-338 27-160 (171)
283 cd01120 RecA-like_NTPases RecA 95.3 0.059 1.3E-06 54.0 8.1 40 215-256 1-40 (165)
284 COG0572 Udk Uridine kinase [Nu 95.3 0.033 7.2E-07 56.6 6.0 79 211-294 6-85 (218)
285 PRK00625 shikimate kinase; Pro 95.3 0.12 2.5E-06 51.8 9.8 21 215-235 2-22 (173)
286 COG2884 FtsE Predicted ATPase 95.3 0.12 2.7E-06 50.5 9.3 63 278-340 140-204 (223)
287 PRK04301 radA DNA repair and r 95.2 0.048 1E-06 61.2 7.7 57 211-268 100-160 (317)
288 PLN03187 meiotic recombination 95.2 0.042 9.1E-07 61.2 7.0 59 211-270 124-186 (344)
289 KOG0735 AAA+-type ATPase [Post 95.2 0.061 1.3E-06 62.8 8.3 95 185-302 407-503 (952)
290 PRK14722 flhF flagellar biosyn 95.2 0.069 1.5E-06 60.0 8.6 87 213-304 137-226 (374)
291 PRK06067 flagellar accessory p 95.1 0.084 1.8E-06 56.5 9.1 88 211-303 23-130 (234)
292 COG1102 Cmk Cytidylate kinase 95.1 0.034 7.5E-07 52.6 5.1 44 215-271 2-45 (179)
293 cd03222 ABC_RNaseL_inhibitor T 95.1 0.11 2.4E-06 52.2 9.1 104 213-338 25-137 (177)
294 KOG1969 DNA replication checkp 95.1 0.058 1.3E-06 63.4 7.8 75 211-306 324-400 (877)
295 TIGR02239 recomb_RAD51 DNA rep 95.1 0.072 1.6E-06 59.2 8.5 57 211-268 94-154 (316)
296 cd03216 ABC_Carb_Monos_I This 95.1 0.069 1.5E-06 53.3 7.6 118 212-337 25-146 (163)
297 PRK07667 uridine kinase; Provi 95.1 0.042 9.2E-07 56.6 6.2 37 195-235 3-39 (193)
298 PF14532 Sigma54_activ_2: Sigm 95.0 0.024 5.3E-07 54.7 4.1 107 189-332 1-109 (138)
299 KOG0730 AAA+-type ATPase [Post 95.0 0.096 2.1E-06 61.1 9.3 160 186-366 434-618 (693)
300 PRK12727 flagellar biosynthesi 95.0 0.11 2.5E-06 60.3 9.9 89 212-303 349-438 (559)
301 cd03223 ABCD_peroxisomal_ALDP 95.0 0.17 3.6E-06 50.7 10.1 118 212-336 26-151 (166)
302 PRK13695 putative NTPase; Prov 95.0 0.024 5.3E-07 57.4 4.2 21 216-236 3-23 (174)
303 COG5238 RNA1 Ran GTPase-activa 95.0 0.02 4.4E-07 58.6 3.4 131 1096-1227 89-252 (388)
304 PRK10867 signal recognition pa 94.9 0.16 3.4E-06 58.7 10.9 25 211-235 98-122 (433)
305 PRK08233 hypothetical protein; 94.9 0.067 1.5E-06 54.8 7.2 23 213-235 3-25 (182)
306 cd03246 ABCC_Protease_Secretio 94.8 0.11 2.3E-06 52.6 8.3 126 213-347 28-168 (173)
307 KOG0744 AAA+-type ATPase [Post 94.8 0.066 1.4E-06 56.5 6.7 79 213-302 177-259 (423)
308 PRK13948 shikimate kinase; Pro 94.8 0.28 6.2E-06 49.5 11.2 25 211-235 8-32 (182)
309 COG1419 FlhF Flagellar GTP-bin 94.8 0.082 1.8E-06 58.8 7.8 88 212-303 202-291 (407)
310 PRK12724 flagellar biosynthesi 94.8 0.12 2.6E-06 58.5 9.2 24 212-235 222-245 (432)
311 PF00154 RecA: recA bacterial 94.8 0.063 1.4E-06 58.8 6.9 86 211-303 51-141 (322)
312 TIGR00064 ftsY signal recognit 94.8 0.15 3.2E-06 55.5 9.7 90 211-303 70-164 (272)
313 PRK00771 signal recognition pa 94.8 0.23 5E-06 57.5 11.7 88 211-302 93-184 (437)
314 PF08433 KTI12: Chromatin asso 94.8 0.056 1.2E-06 58.3 6.4 22 214-235 2-23 (270)
315 COG4608 AppF ABC-type oligopep 94.8 0.13 2.7E-06 54.1 8.6 127 212-341 38-178 (268)
316 PRK10733 hflB ATP-dependent me 94.7 0.14 3.1E-06 63.1 10.7 158 186-364 152-336 (644)
317 KOG0734 AAA+-type ATPase conta 94.7 0.085 1.8E-06 59.5 7.6 52 186-237 304-361 (752)
318 PRK14974 cell division protein 94.7 0.19 4.1E-06 56.0 10.5 89 212-304 139-233 (336)
319 PLN03186 DNA repair protein RA 94.7 0.15 3.1E-06 57.1 9.7 58 211-269 121-182 (342)
320 cd01122 GP4d_helicase GP4d_hel 94.7 0.23 5.1E-06 54.6 11.4 54 212-268 29-82 (271)
321 KOG0473 Leucine-rich repeat pr 94.7 0.003 6.4E-08 62.9 -3.2 85 594-679 38-122 (326)
322 TIGR02236 recomb_radA DNA repa 94.7 0.085 1.8E-06 59.2 7.9 57 211-268 93-153 (310)
323 COG1428 Deoxynucleoside kinase 94.7 0.02 4.4E-07 57.2 2.5 24 213-236 4-27 (216)
324 cd03115 SRP The signal recogni 94.7 0.13 2.8E-06 52.0 8.6 21 215-235 2-22 (173)
325 KOG1947 Leucine rich repeat pr 94.7 0.0036 7.8E-08 76.1 -3.5 172 1082-1253 195-389 (482)
326 COG0464 SpoVK ATPases of the A 94.7 0.18 4E-06 60.8 11.2 157 187-364 243-424 (494)
327 COG0563 Adk Adenylate kinase a 94.6 0.046 9.9E-07 54.9 4.9 22 215-236 2-23 (178)
328 COG1875 NYN ribonuclease and A 94.6 0.19 4.2E-06 54.3 9.6 136 188-332 226-387 (436)
329 cd03281 ABC_MSH5_euk MutS5 hom 94.6 0.039 8.5E-07 57.6 4.6 23 213-235 29-51 (213)
330 PRK05703 flhF flagellar biosyn 94.6 0.22 4.9E-06 57.8 11.1 87 213-302 221-308 (424)
331 KOG0729 26S proteasome regulat 94.6 0.22 4.7E-06 50.9 9.4 56 186-243 177-239 (435)
332 TIGR00708 cobA cob(I)alamin ad 94.5 0.22 4.9E-06 49.1 9.3 116 214-333 6-140 (173)
333 cd03230 ABC_DR_subfamily_A Thi 94.5 0.2 4.2E-06 50.7 9.4 121 212-338 25-160 (173)
334 COG1136 SalX ABC-type antimicr 94.5 0.25 5.4E-06 51.0 9.9 67 280-348 147-216 (226)
335 PF01583 APS_kinase: Adenylyls 94.5 0.048 1E-06 52.8 4.5 36 213-250 2-37 (156)
336 PTZ00301 uridine kinase; Provi 94.5 0.045 9.9E-07 56.6 4.7 23 213-235 3-25 (210)
337 KOG1051 Chaperone HSP104 and r 94.4 0.17 3.6E-06 62.6 10.0 121 186-318 562-685 (898)
338 TIGR00959 ffh signal recogniti 94.4 0.21 4.5E-06 57.6 10.3 24 212-235 98-121 (428)
339 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.21 4.5E-06 53.4 9.8 49 211-263 19-67 (237)
340 TIGR02858 spore_III_AA stage I 94.4 0.17 3.8E-06 54.5 9.0 129 194-337 97-233 (270)
341 KOG2035 Replication factor C, 94.4 0.29 6.4E-06 50.8 9.9 207 188-418 15-260 (351)
342 PLN00020 ribulose bisphosphate 94.3 0.057 1.2E-06 59.2 5.1 26 211-236 146-171 (413)
343 PRK09270 nucleoside triphospha 94.3 0.17 3.7E-06 53.8 8.9 25 211-235 31-55 (229)
344 PF13238 AAA_18: AAA domain; P 94.3 0.03 6.5E-07 53.4 2.8 21 216-236 1-21 (129)
345 TIGR00390 hslU ATP-dependent p 94.2 0.11 2.4E-06 58.4 7.3 81 186-268 12-104 (441)
346 PRK12726 flagellar biosynthesi 94.2 0.36 7.8E-06 53.8 11.1 91 211-304 204-296 (407)
347 PRK12723 flagellar biosynthesi 94.2 0.17 3.6E-06 57.6 8.9 89 212-304 173-265 (388)
348 PF00485 PRK: Phosphoribulokin 94.2 0.033 7.2E-07 57.5 3.1 21 215-235 1-21 (194)
349 cd02019 NK Nucleoside/nucleoti 94.2 0.032 6.9E-07 46.0 2.4 21 215-235 1-21 (69)
350 TIGR01069 mutS2 MutS2 family p 94.2 0.064 1.4E-06 67.1 5.9 187 213-414 322-518 (771)
351 cd02025 PanK Pantothenate kina 94.2 0.16 3.4E-06 53.4 7.9 21 215-235 1-21 (220)
352 PRK06547 hypothetical protein; 94.1 0.059 1.3E-06 53.9 4.5 26 211-236 13-38 (172)
353 cd03229 ABC_Class3 This class 94.1 0.17 3.6E-06 51.5 7.9 24 212-235 25-48 (178)
354 PRK05439 pantothenate kinase; 94.1 0.24 5.2E-06 54.3 9.4 82 210-294 83-166 (311)
355 cd01125 repA Hexameric Replica 94.0 0.26 5.7E-06 52.9 9.6 21 215-235 3-23 (239)
356 COG2842 Uncharacterized ATPase 94.0 0.5 1.1E-05 50.2 11.1 99 212-319 93-191 (297)
357 PF13671 AAA_33: AAA domain; P 94.0 0.043 9.4E-07 53.5 3.3 21 215-235 1-21 (143)
358 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.061 1.3E-06 58.8 4.6 51 185-235 60-110 (358)
359 smart00534 MUTSac ATPase domai 94.0 0.031 6.6E-07 57.2 2.2 119 215-339 1-128 (185)
360 TIGR00554 panK_bact pantothena 94.0 0.23 5.1E-06 54.0 9.0 80 211-293 60-141 (290)
361 PRK11608 pspF phage shock prot 94.0 0.16 3.5E-06 57.1 8.1 45 187-235 7-51 (326)
362 PF07724 AAA_2: AAA domain (Cd 94.0 0.077 1.7E-06 53.0 4.9 39 213-253 3-42 (171)
363 PRK05480 uridine/cytidine kina 94.0 0.043 9.2E-07 57.6 3.3 25 211-235 4-28 (209)
364 cd01121 Sms Sms (bacterial rad 94.0 0.31 6.7E-06 55.4 10.3 83 212-302 81-167 (372)
365 PRK07132 DNA polymerase III su 93.9 1.7 3.7E-05 47.7 15.7 153 213-396 18-185 (299)
366 PTZ00035 Rad51 protein; Provis 93.9 0.35 7.6E-06 54.3 10.4 58 211-269 116-177 (337)
367 COG1121 ZnuC ABC-type Mn/Zn tr 93.8 0.3 6.6E-06 51.3 9.1 124 213-338 30-204 (254)
368 TIGR00235 udk uridine kinase. 93.8 0.048 1E-06 57.0 3.4 25 211-235 4-28 (207)
369 PRK05201 hslU ATP-dependent pr 93.8 0.14 3E-06 57.8 6.9 82 185-268 14-107 (443)
370 TIGR03878 thermo_KaiC_2 KaiC d 93.8 0.24 5.2E-06 53.7 8.7 42 211-254 34-75 (259)
371 PRK06731 flhF flagellar biosyn 93.7 0.35 7.6E-06 52.1 9.7 89 213-304 75-165 (270)
372 TIGR01425 SRP54_euk signal rec 93.7 0.35 7.5E-06 55.5 10.2 25 211-235 98-122 (429)
373 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.27 5.8E-06 51.1 8.8 25 212-236 25-49 (200)
374 PRK00889 adenylylsulfate kinas 93.7 0.16 3.5E-06 51.4 7.0 24 212-235 3-26 (175)
375 PRK06762 hypothetical protein; 93.6 0.049 1.1E-06 54.7 3.0 23 213-235 2-24 (166)
376 PRK09519 recA DNA recombinatio 93.6 0.18 3.9E-06 61.9 8.1 86 211-303 58-148 (790)
377 PRK15429 formate hydrogenlyase 93.6 0.18 3.8E-06 63.5 8.4 134 186-332 376-520 (686)
378 PRK13765 ATP-dependent proteas 93.6 0.099 2.1E-06 63.4 5.8 75 186-270 31-105 (637)
379 PRK05986 cob(I)alamin adenolsy 93.5 0.24 5.2E-06 49.6 7.4 118 213-333 22-158 (191)
380 PHA00729 NTP-binding motif con 93.5 0.08 1.7E-06 54.7 4.2 24 212-235 16-39 (226)
381 PF07726 AAA_3: ATPase family 93.5 0.045 9.8E-07 50.3 2.1 27 216-244 2-28 (131)
382 TIGR02974 phageshock_pspF psp 93.5 0.24 5.2E-06 55.6 8.4 44 188-235 1-44 (329)
383 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.089 1.9E-06 54.4 4.6 121 213-340 29-158 (204)
384 PRK14721 flhF flagellar biosyn 93.5 0.33 7.2E-06 55.6 9.5 88 212-302 190-278 (420)
385 cd02028 UMPK_like Uridine mono 93.5 0.12 2.6E-06 52.3 5.5 21 215-235 1-21 (179)
386 cd03285 ABC_MSH2_euk MutS2 hom 93.4 0.048 1E-06 57.3 2.5 175 212-401 29-218 (222)
387 PF13481 AAA_25: AAA domain; P 93.4 0.066 1.4E-06 55.4 3.5 42 213-254 32-81 (193)
388 COG0465 HflB ATP-dependent Zn 93.4 0.69 1.5E-05 54.9 12.0 159 184-363 148-333 (596)
389 TIGR00150 HI0065_YjeE ATPase, 93.4 0.12 2.6E-06 48.6 4.8 40 193-236 6-45 (133)
390 PRK06002 fliI flagellum-specif 93.2 0.2 4.4E-06 57.5 7.3 88 212-302 164-263 (450)
391 COG4088 Predicted nucleotide k 93.2 0.26 5.6E-06 48.8 6.9 22 214-235 2-23 (261)
392 PTZ00088 adenylate kinase 1; P 93.2 0.082 1.8E-06 55.6 3.8 20 216-235 9-28 (229)
393 PF00910 RNA_helicase: RNA hel 93.2 0.053 1.2E-06 49.5 2.1 21 216-236 1-21 (107)
394 KOG0727 26S proteasome regulat 93.2 0.57 1.2E-05 47.6 9.3 52 185-236 154-212 (408)
395 PF12061 DUF3542: Protein of u 93.2 0.3 6.5E-06 51.3 7.6 75 12-86 297-372 (402)
396 cd03215 ABC_Carb_Monos_II This 93.2 0.55 1.2E-05 47.9 9.8 24 213-236 26-49 (182)
397 PF00006 ATP-synt_ab: ATP synt 93.2 0.19 4.1E-06 52.1 6.3 84 213-302 15-114 (215)
398 TIGR00382 clpX endopeptidase C 93.1 0.44 9.4E-06 54.6 9.8 51 185-235 76-138 (413)
399 PRK04328 hypothetical protein; 93.1 0.27 5.8E-06 52.9 7.8 42 211-254 21-62 (249)
400 COG4181 Predicted ABC-type tra 93.1 0.76 1.6E-05 44.2 9.5 85 255-340 121-214 (228)
401 COG3640 CooC CO dehydrogenase 93.1 0.13 2.9E-06 52.2 4.9 42 215-257 2-43 (255)
402 cd03232 ABC_PDR_domain2 The pl 93.1 0.43 9.4E-06 49.1 9.0 24 212-235 32-55 (192)
403 PRK05022 anaerobic nitric oxid 93.1 0.33 7.2E-06 58.5 9.3 48 185-236 186-233 (509)
404 TIGR01360 aden_kin_iso1 adenyl 93.1 0.075 1.6E-06 54.7 3.4 24 212-235 2-25 (188)
405 COG4618 ArpD ABC-type protease 93.1 0.25 5.3E-06 56.1 7.3 23 213-235 362-384 (580)
406 PRK03839 putative kinase; Prov 93.0 0.067 1.5E-06 54.6 2.8 22 215-236 2-23 (180)
407 cd02027 APSK Adenosine 5'-phos 93.0 0.25 5.5E-06 48.3 6.8 21 215-235 1-21 (149)
408 PRK14723 flhF flagellar biosyn 93.0 0.57 1.2E-05 57.5 11.0 87 213-303 185-273 (767)
409 cd03369 ABCC_NFT1 Domain 2 of 93.0 0.86 1.9E-05 47.7 11.2 24 212-235 33-56 (207)
410 cd00267 ABC_ATPase ABC (ATP-bi 93.0 0.21 4.6E-06 49.5 6.3 119 213-338 25-145 (157)
411 PRK10463 hydrogenase nickel in 93.0 0.32 7E-06 52.4 7.9 88 211-304 102-195 (290)
412 COG0714 MoxR-like ATPases [Gen 93.0 0.21 4.5E-06 56.6 6.9 64 187-263 25-88 (329)
413 PF03308 ArgK: ArgK protein; 92.9 0.18 3.9E-06 52.6 5.7 65 194-262 14-78 (266)
414 PF06745 KaiC: KaiC; InterPro 92.9 0.29 6.2E-06 52.1 7.7 87 211-302 17-124 (226)
415 PRK04040 adenylate kinase; Pro 92.9 0.077 1.7E-06 54.1 3.0 22 214-235 3-24 (188)
416 COG0396 sufC Cysteine desulfur 92.9 1 2.2E-05 45.9 10.7 64 280-345 149-216 (251)
417 cd03244 ABCC_MRP_domain2 Domai 92.9 0.67 1.4E-05 49.1 10.4 23 213-235 30-52 (221)
418 COG0467 RAD55 RecA-superfamily 92.9 0.13 2.9E-06 56.0 5.1 42 211-254 21-62 (260)
419 PRK13543 cytochrome c biogenes 92.8 0.82 1.8E-05 48.1 10.8 25 212-236 36-60 (214)
420 PRK15453 phosphoribulokinase; 92.8 0.52 1.1E-05 50.4 8.9 25 211-235 3-27 (290)
421 cd00984 DnaB_C DnaB helicase C 92.7 0.65 1.4E-05 50.0 10.2 53 212-267 12-64 (242)
422 KOG0473 Leucine-rich repeat pr 92.7 0.0077 1.7E-07 60.0 -4.2 88 610-699 30-118 (326)
423 PRK06995 flhF flagellar biosyn 92.7 0.59 1.3E-05 54.6 10.1 89 212-303 255-344 (484)
424 PRK06217 hypothetical protein; 92.7 0.16 3.5E-06 51.8 5.1 22 215-236 3-24 (183)
425 PRK10751 molybdopterin-guanine 92.7 0.11 2.4E-06 51.5 3.7 25 211-235 4-28 (173)
426 PRK00131 aroK shikimate kinase 92.7 0.088 1.9E-06 53.4 3.2 23 213-235 4-26 (175)
427 PF03205 MobB: Molybdopterin g 92.6 0.15 3.3E-06 49.0 4.5 39 214-253 1-39 (140)
428 PRK05342 clpX ATP-dependent pr 92.6 0.26 5.7E-06 56.8 7.1 51 185-235 70-130 (412)
429 TIGR03575 selen_PSTK_euk L-ser 92.6 0.43 9.2E-06 53.1 8.4 20 216-235 2-21 (340)
430 PRK00409 recombination and DNA 92.6 0.13 2.7E-06 64.8 4.9 188 212-414 326-523 (782)
431 PRK10416 signal recognition pa 92.6 0.66 1.4E-05 51.6 10.0 25 212-236 113-137 (318)
432 COG4240 Predicted kinase [Gene 92.5 0.73 1.6E-05 46.4 9.0 83 211-295 48-135 (300)
433 PF00625 Guanylate_kin: Guanyl 92.5 0.14 3E-06 52.4 4.3 36 213-250 2-37 (183)
434 PF10236 DAP3: Mitochondrial r 92.5 2.5 5.5E-05 47.0 14.5 49 344-393 258-306 (309)
435 PF13504 LRR_7: Leucine rich r 92.5 0.07 1.5E-06 29.9 1.1 14 623-636 3-16 (17)
436 cd03213 ABCG_EPDR ABCG transpo 92.5 0.75 1.6E-05 47.4 9.7 25 212-236 34-58 (194)
437 TIGR01817 nifA Nif-specific re 92.5 0.29 6.4E-06 59.6 7.8 49 184-236 194-242 (534)
438 PRK08533 flagellar accessory p 92.4 0.57 1.2E-05 49.7 8.9 49 212-264 23-71 (230)
439 cd01135 V_A-ATPase_B V/A-type 92.4 0.42 9.1E-06 51.0 7.7 91 212-302 68-175 (276)
440 cd02024 NRK1 Nicotinamide ribo 92.4 0.079 1.7E-06 53.5 2.3 21 215-235 1-21 (187)
441 COG1936 Predicted nucleotide k 92.4 0.099 2.2E-06 50.5 2.8 20 215-234 2-21 (180)
442 TIGR03881 KaiC_arch_4 KaiC dom 92.4 0.49 1.1E-05 50.5 8.5 42 211-254 18-59 (229)
443 TIGR03522 GldA_ABC_ATP gliding 92.4 0.55 1.2E-05 52.3 9.2 25 212-236 27-51 (301)
444 COG0003 ArsA Predicted ATPase 92.4 0.2 4.3E-06 55.2 5.5 49 213-263 2-50 (322)
445 PRK08972 fliI flagellum-specif 92.3 0.45 9.8E-06 54.4 8.4 87 212-302 161-261 (444)
446 PRK06793 fliI flagellum-specif 92.3 0.83 1.8E-05 52.6 10.5 122 212-339 155-292 (432)
447 cd00227 CPT Chloramphenicol (C 92.3 0.11 2.3E-06 52.7 3.1 22 214-235 3-24 (175)
448 PF12775 AAA_7: P-loop contain 92.3 0.087 1.9E-06 57.2 2.6 22 214-235 34-55 (272)
449 TIGR02322 phosphon_PhnN phosph 92.2 0.1 2.2E-06 53.2 2.9 23 214-236 2-24 (179)
450 cd03280 ABC_MutS2 MutS2 homolo 92.2 0.095 2.1E-06 54.4 2.7 21 214-234 29-49 (200)
451 COG1703 ArgK Putative periplas 92.2 0.17 3.6E-06 53.5 4.4 66 196-265 38-103 (323)
452 cd02023 UMPK Uridine monophosp 92.1 0.087 1.9E-06 54.7 2.3 21 215-235 1-21 (198)
453 PF06309 Torsin: Torsin; Inte 92.1 0.25 5.3E-06 45.5 4.8 41 193-236 36-76 (127)
454 PF03193 DUF258: Protein of un 92.1 0.24 5.3E-06 48.2 5.1 35 193-236 24-58 (161)
455 PF13504 LRR_7: Leucine rich r 92.0 0.091 2E-06 29.4 1.2 17 598-614 1-17 (17)
456 PF13245 AAA_19: Part of AAA d 92.0 0.25 5.4E-06 41.5 4.5 23 213-235 10-32 (76)
457 COG2019 AdkA Archaeal adenylat 92.0 0.12 2.6E-06 49.2 2.8 23 213-235 4-26 (189)
458 TIGR01359 UMP_CMP_kin_fam UMP- 92.0 0.092 2E-06 53.8 2.3 21 215-235 1-21 (183)
459 TIGR03498 FliI_clade3 flagella 92.0 0.54 1.2E-05 54.0 8.6 87 212-302 139-239 (418)
460 PTZ00185 ATPase alpha subunit; 92.0 0.57 1.2E-05 54.0 8.6 92 212-303 188-299 (574)
461 TIGR00764 lon_rel lon-related 91.9 0.3 6.5E-06 59.6 6.9 74 186-270 18-92 (608)
462 KOG0652 26S proteasome regulat 91.9 4.4 9.5E-05 41.7 13.7 50 186-235 171-227 (424)
463 PRK11823 DNA repair protein Ra 91.9 0.69 1.5E-05 54.3 9.7 41 212-254 79-119 (446)
464 TIGR03574 selen_PSTK L-seryl-t 91.9 0.21 4.6E-06 53.9 5.1 21 215-235 1-21 (249)
465 cd02021 GntK Gluconate kinase 91.9 0.1 2.2E-06 51.3 2.5 21 215-235 1-21 (150)
466 PRK09280 F0F1 ATP synthase sub 91.9 0.6 1.3E-05 53.9 8.8 90 212-302 143-247 (463)
467 PF05659 RPW8: Arabidopsis bro 91.9 4.8 0.00011 38.8 13.5 82 5-86 3-85 (147)
468 cd03243 ABC_MutS_homologs The 91.8 0.11 2.5E-06 54.0 2.8 22 214-235 30-51 (202)
469 TIGR03263 guanyl_kin guanylate 91.8 0.13 2.8E-06 52.5 3.1 22 214-235 2-23 (180)
470 PRK13947 shikimate kinase; Pro 91.8 0.11 2.5E-06 52.4 2.7 21 215-235 3-23 (171)
471 KOG0736 Peroxisome assembly fa 91.8 3.3 7.1E-05 49.8 14.5 98 186-304 672-775 (953)
472 KOG4252 GTP-binding protein [S 91.8 0.49 1.1E-05 45.2 6.4 37 215-252 22-58 (246)
473 TIGR00416 sms DNA repair prote 91.7 0.87 1.9E-05 53.5 10.2 55 194-254 79-133 (454)
474 cd01136 ATPase_flagellum-secre 91.6 0.87 1.9E-05 50.4 9.4 87 212-302 68-168 (326)
475 PRK08149 ATP synthase SpaL; Va 91.6 0.52 1.1E-05 54.1 7.9 87 212-302 150-250 (428)
476 cd00071 GMPK Guanosine monopho 91.6 0.12 2.7E-06 49.6 2.5 21 215-235 1-21 (137)
477 cd02020 CMPK Cytidine monophos 91.5 0.11 2.5E-06 50.8 2.3 21 215-235 1-21 (147)
478 PF01078 Mg_chelatase: Magnesi 91.5 0.25 5.5E-06 50.1 4.7 42 186-235 3-44 (206)
479 PF02374 ArsA_ATPase: Anion-tr 91.5 0.24 5.2E-06 54.9 5.0 22 214-235 2-23 (305)
480 PRK03846 adenylylsulfate kinas 91.5 0.15 3.4E-06 52.7 3.3 25 211-235 22-46 (198)
481 PRK12597 F0F1 ATP synthase sub 91.5 0.41 8.9E-06 55.5 6.9 90 212-302 142-246 (461)
482 PRK10875 recD exonuclease V su 91.4 0.86 1.9E-05 55.4 10.0 115 213-332 167-301 (615)
483 PRK00300 gmk guanylate kinase; 91.4 0.16 3.4E-06 53.2 3.3 25 212-236 4-28 (205)
484 PRK13949 shikimate kinase; Pro 91.4 0.13 2.9E-06 51.4 2.6 21 215-235 3-23 (169)
485 cd02034 CooC The accessory pro 91.4 0.73 1.6E-05 42.6 7.3 20 216-235 2-21 (116)
486 cd01672 TMPK Thymidine monopho 91.4 0.35 7.7E-06 50.3 6.0 22 215-236 2-23 (200)
487 KOG0736 Peroxisome assembly fa 91.4 2.3 5E-05 51.0 12.7 49 187-235 402-453 (953)
488 PRK07594 type III secretion sy 91.3 0.59 1.3E-05 53.7 7.9 87 212-302 154-254 (433)
489 TIGR00176 mobB molybdopterin-g 91.2 0.18 4E-06 49.4 3.4 34 215-250 1-35 (155)
490 cd00820 PEPCK_HprK Phosphoenol 91.2 0.19 4.2E-06 45.1 3.1 22 213-234 15-36 (107)
491 PRK14737 gmk guanylate kinase; 91.2 0.18 3.9E-06 51.3 3.4 24 212-235 3-26 (186)
492 PRK05917 DNA polymerase III su 91.2 1.6 3.4E-05 47.4 10.6 59 292-350 94-154 (290)
493 COG4639 Predicted kinase [Gene 91.1 0.14 3.1E-06 48.3 2.3 23 213-235 2-24 (168)
494 KOG3347 Predicted nucleotide k 91.1 0.15 3.2E-06 47.5 2.3 69 213-292 7-75 (176)
495 KOG3864 Uncharacterized conser 91.1 0.033 7.2E-07 54.9 -1.9 82 1099-1180 101-185 (221)
496 PRK10078 ribose 1,5-bisphospho 91.0 0.17 3.7E-06 51.8 3.1 23 214-236 3-25 (186)
497 PRK12339 2-phosphoglycerate ki 91.0 0.18 3.8E-06 51.8 3.1 23 213-235 3-25 (197)
498 COG0194 Gmk Guanylate kinase [ 91.0 0.19 4.1E-06 49.4 3.1 24 213-236 4-27 (191)
499 COG1124 DppF ABC-type dipeptid 91.0 0.2 4.3E-06 51.4 3.3 24 212-235 32-55 (252)
500 TIGR03880 KaiC_arch_3 KaiC dom 90.9 0.87 1.9E-05 48.3 8.5 41 212-254 15-55 (224)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-83 Score=780.98 Aligned_cols=657 Identities=30% Similarity=0.446 Sum_probs=509.1
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCcccCCC
Q 037340 26 ELFKRHKKLKADFIKWKGMLEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDAEDVLDEFETEALRRELLRQEPAAAGQ 105 (1276)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~~~~~~~~~~~~~~~~~ 105 (1276)
++.....++++.+..++++|..+++++++|+.++.....+..|...++|++|++||.++.|.......+..+.-
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l------ 91 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL------ 91 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh------
Confidence 34444556778999999999999999999999988888999999999999999999999999887665433200
Q ss_pred CCcccchhhhhhhhccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCc-cCCCCCCCcccccc
Q 037340 106 PSLSANTNKLRKLVHTRCTNLSPRSIQFESMMTSKIKGITARLQDIISTQKGLLDSKNVISVGKS-RDVGQRLPTTSLVN 184 (1276)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (1276)
......++.... ..+.+.....+..+..++..+ ....+.++.......+.. .......++.+...
T Consensus 92 ----~~~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~-l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 92 ----STRSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKV-LREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred ----hhhHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHH-HHHHHHhccccceecccccccchhhcccCCCCc
Confidence 000011222111 123444444444444444444 222223332221111110 11111223344444
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchh-hhcccccEEEEEEcCCCCHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDR-VQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
+.. ||.+..++++.+.|.+.+ ..+++|+||||+||||||++++|+.. ++.+|+.++||.||+.++...++++
T Consensus 158 ~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 158 ESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred ccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 445 999999999999997653 38999999999999999999999987 9999999999999999999999999
Q ss_pred HHHHhhcccCC-CCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhh-cCC
Q 037340 264 ILRSIADDQIK-DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAES-MGV 341 (1276)
Q Consensus 264 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~-~~~ 341 (1276)
|++.++..... .....++++..|.+.|++|||+||+||||++ .+|+.+..++|....||+|++|||++.|+.. +++
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 99999875432 2333478899999999999999999999996 5699999999998889999999999999998 788
Q ss_pred CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhccccc
Q 037340 342 DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLR 421 (1276)
Q Consensus 342 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~ 421 (1276)
...++++.|+.+|||+||.+.++.... ...+.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+...+...
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 899999999999999999999987643 3445599999999999999999999999999999999999999987755522
Q ss_pred ----ccccchhHHHHHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCC
Q 037340 422 ----EESCNILPALRVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRS 497 (1276)
Q Consensus 422 ----~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~s 497 (1276)
+..+.+.+++++||+.||+++|.||+|||+||+||.|+++.|+.+|+||||+.+...+.++++.|+.|+.+|++++
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~ 467 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS 467 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence 2346799999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred cccccC--CCCCcEEEcchHHHHHHHhhc-----cceEeeccc--ccccCCcccCccceEEEEEecCCCcccccccccCC
Q 037340 498 LFQQSS--KDASRFVMHDLINDLARWAAG-----ELYFRMEDA--LAGENGQEFSQSLRHFSYIRGGYDGKNRLESICGV 568 (1276)
Q Consensus 498 ll~~~~--~~~~~~~mHdli~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~ 568 (1276)
|+.... .....|+|||+||++|.|+++ ++...+..+ .........+..+|+++++.+... ....-..+
T Consensus 468 Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~ 544 (889)
T KOG4658|consen 468 LLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSEN 544 (889)
T ss_pred HHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hccCCCCC
Confidence 999876 245789999999999999999 454443332 111122334567899999886432 22334456
Q ss_pred CCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCc-cccccCcccccccccceeeccCCcccccchhhhccccc
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGY-CISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNL 646 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L 646 (1276)
++|++|.+.++.+ .+ ...... |..++.||||||++| .+.++|++|++|.|||||+|+++.|..+|..+++|+.|
T Consensus 545 ~~L~tLll~~n~~---~l-~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSD---WL-LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecch---hh-hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 6899999988742 01 122222 889999999999987 47899999999999999999999999999999999999
Q ss_pred cEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceEeccCCCCCchhhccccccc
Q 037340 647 YTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQ 720 (1276)
Q Consensus 647 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~ 720 (1276)
.+||+..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+.+...+...+..+..+..|+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLR 693 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHH
Confidence 999999998888887777789999999987654 2111123555666666665555433332333444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.2e-63 Score=645.21 Aligned_cols=352 Identities=23% Similarity=0.290 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcccccc----CCccCCCCCCCccccccCCeeecchhhHHHHHHHHhcCCCCCCCCcc
Q 037340 139 SKIKGITARLQDIISTQKGLLDSKNVISV----GKSRDVGQRLPTTSLVNEAKVYGREKDKEAIVELLLRDDLRADDGFP 214 (1276)
Q Consensus 139 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~ 214 (1276)
.+++++++.+.++ ++..+.......... ....++......++.....++|||+++++++..+|... .+.++
T Consensus 134 ~~~~~w~~al~~~-~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~~ 208 (1153)
T PLN03210 134 DEKIQWKQALTDV-ANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEVR 208 (1153)
T ss_pred hHHHHHHHHHHHH-hCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCceE
Confidence 4577777777777 554432111000000 01112222222333344567999999999999988532 35689
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE---cCC-----------CC-HHHHHHHHHHHhhcccCCCCCcH
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV---SED-----------FD-VSRVTKSILRSIADDQIKDDDDL 279 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~ 279 (1276)
+|+|+||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...++++++.++..........
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC-
Confidence 999999999999999999998 67888998887642 111 01 1234455555554332211111
Q ss_pred HHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcCCCCceecCCCChhhHHHhh
Q 037340 280 NSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 280 ~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
...+++.+++||+||||||||+ ...|+.+.....+.++||+||||||++.++...+..++|+++.++.++||+||
T Consensus 286 ---~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 286 ---LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMF 360 (1153)
T ss_pred ---HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHH
Confidence 1456788899999999999977 57788888777777899999999999999988777889999999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhcccccccccchhHHHHHhHhcCc
Q 037340 360 TQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLA 439 (1276)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~ 439 (1276)
+++||+.. .+++++.+++++|+++|+|+|||++++|++|+++ +..+|+.++++..... ...|.++|++||+.|+
T Consensus 361 ~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~ 434 (1153)
T PLN03210 361 CRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGLN 434 (1153)
T ss_pred HHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhccC
Confidence 99999764 3456788999999999999999999999999987 6799999998875433 3579999999999998
Q ss_pred H-HHHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCCcccccCCCCCcEEEcchHHHH
Q 037340 440 P-QLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSKDASRFVMHDLINDL 518 (1276)
Q Consensus 440 ~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~mHdli~~~ 518 (1276)
+ ..|.||+++|+|+.+..++ .+..|++.+.... +..++.|+++||++... .++.|||++|+|
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~ 497 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEM 497 (1153)
T ss_pred ccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHH
Confidence 6 5999999999999987554 4777888765432 22388999999998753 579999999999
Q ss_pred HHHhhccc
Q 037340 519 ARWAAGEL 526 (1276)
Q Consensus 519 ~~~~~~~~ 526 (1276)
|++++.++
T Consensus 498 ~r~i~~~~ 505 (1153)
T PLN03210 498 GKEIVRAQ 505 (1153)
T ss_pred HHHHHHhh
Confidence 99998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=9e-42 Score=380.98 Aligned_cols=279 Identities=36% Similarity=0.611 Sum_probs=227.6
Q ss_pred chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhc
Q 037340 191 REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIAD 270 (1276)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1276)
||.++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999997642 578999999999999999999999977789999999999999999999999999999988
Q ss_pred ccCC--CCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcCC-CCceec
Q 037340 271 DQIK--DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMGV-DPAYQL 347 (1276)
Q Consensus 271 ~~~~--~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~-~~~~~l 347 (1276)
.... ...+.+.....+.+.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4667888999999999999999999999874 5898888888777789999999999999877664 678999
Q ss_pred CCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhcccccc---cc
Q 037340 348 KELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLRE---ES 424 (1276)
Q Consensus 348 ~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~---~~ 424 (1276)
++|+.+||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++...+...+ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 223455567899999999999999999999997766778999998776554432 34
Q ss_pred cchhHHHHHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCccc
Q 037340 425 CNILPALRVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQE 476 (1276)
Q Consensus 425 ~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 476 (1276)
..+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+++|||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6799999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.2e-36 Score=391.52 Aligned_cols=530 Identities=17% Similarity=0.187 Sum_probs=251.9
Q ss_pred cceEEEEEecCCCcccccccccCCCCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCcccc-ccCcccccccc
Q 037340 545 SLRHFSYIRGGYDGKNRLESICGVKHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGYCIS-KLPNEIGNLKH 622 (1276)
Q Consensus 545 ~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~ 622 (1276)
+++.+.+........ ....+..+++|+.|.+.++.. ...++.. +..+++||+|+|++|.++ .+|. +.+++
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~-----~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQL-----SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCcc-----CCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 455555544322111 123344556666666555431 1122223 345566666666666554 2332 34556
Q ss_pred cceeeccCCccc-ccchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceE
Q 037340 623 LRFLNLSGTSIQ-FLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFV 701 (1276)
Q Consensus 623 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~ 701 (1276)
|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 666666666554 4555666666666666666644445555566666666666666553334555555555555553322
Q ss_pred eccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCC
Q 037340 702 VGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPN 781 (1276)
Q Consensus 702 ~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 781 (1276)
+ .. ....+..+..+
T Consensus 222 n------------------------------------------------------~l------------~~~~p~~l~~l 235 (968)
T PLN00113 222 N------------------------------------------------------NL------------SGEIPYEIGGL 235 (968)
T ss_pred C------------------------------------------------------cc------------CCcCChhHhcC
Confidence 1 11 00111122223
Q ss_pred CCccEEEEeccCCC-CCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCCC
Q 037340 782 QALQELTILGYGGT-KFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPF 859 (1276)
Q Consensus 782 ~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~ 859 (1276)
++|+.|++.++... .+|..+. .+++|+.|++++|.+.+.+|. ++++++|+.|++++|.....++. .+. .+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~-----~l 307 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVI-----QL 307 (968)
T ss_pred CCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHc-----CC
Confidence 34444444444322 2333333 344555555555554444432 44455555555554432222211 111 14
Q ss_pred CCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEE
Q 037340 860 PSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHI 939 (1276)
Q Consensus 860 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L 939 (1276)
++|+.|++.+|..... .+ ..+..+++|+.|++++|. +.+.+|. .+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~-~~----~~~~~l~~L~~L~L~~n~-l~~~~p~------------------~l~~~~~L~~L~L 363 (968)
T PLN00113 308 QNLEILHLFSNNFTGK-IP----VALTSLPRLQVLQLWSNK-FSGEIPK------------------NLGKHNNLTVLDL 363 (968)
T ss_pred CCCcEEECCCCccCCc-CC----hhHhcCCCCCEEECcCCC-CcCcCCh------------------HHhCCCCCcEEEC
Confidence 4555555544421111 11 113345555555555532 3333332 1223344444444
Q ss_pred ccCCc--ccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecC
Q 037340 940 DGCRR--VVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGC 1017 (1276)
Q Consensus 940 ~~~~~--~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c 1017 (1276)
++|.. ..+..+..+++|+.|++++|.....++..+ ..+++|+.|.+.+|.... ..+..+..+++|+.|++++|
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~-~~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL-GACRSLRRVRLQDNSFSG----ELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH-hCCCCCCEEECcCCEeee----ECChhHhcCCCCCEEECcCC
Confidence 44431 122333444455555555544211111111 223344444443333221 12445566667777777666
Q ss_pred CCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCC
Q 037340 1018 SQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLP 1097 (1276)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~ 1097 (1276)
.-...++.. +..++ +|+.|++++|.. ...+|..+ .
T Consensus 439 ~l~~~~~~~------~~~l~-~L~~L~L~~n~~-------------------------------------~~~~p~~~-~ 473 (968)
T PLN00113 439 NLQGRINSR------KWDMP-SLQMLSLARNKF-------------------------------------FGGLPDSF-G 473 (968)
T ss_pred cccCccChh------hccCC-CCcEEECcCcee-------------------------------------eeecCccc-c
Confidence 322211100 00111 333333333211 11111111 1
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC-CCCCCCceeEeecCCCCccccccccCCCCCcceE
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED-GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKL 1176 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 1176 (1276)
.++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. +.+++|++|+|++|.+.+..|.. +..++
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~----- 547 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS-FSEMP----- 547 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh-HhCcc-----
Confidence 246677777777666666666666777777777776644444432 34566666666666666655543 44444
Q ss_pred EecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCCccccccccccCChhH
Q 037340 1177 KISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPLI 1253 (1276)
Q Consensus 1177 ~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~cp~l 1253 (1276)
+|++|++++|+....+|..+.++++|+.|++++|+....+|..+.+.++....+.++|.+
T Consensus 548 -----------------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 548 -----------------VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred -----------------cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 455555555565556776666777777777777776666776655555555566666665
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-34 Score=378.94 Aligned_cols=506 Identities=19% Similarity=0.185 Sum_probs=322.5
Q ss_pred CCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCcccc-ccCcccc-cccccceeeccCCccc-ccchhhhcccc
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCIS-KLPNEIG-NLKHLRFLNLSGTSIQ-FLPDSINSLYN 645 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~-~lp~~i~~L~~ 645 (1276)
.+++.|.+.++.. .......|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+. .+|. +.+++
T Consensus 69 ~~v~~L~L~~~~i-----~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNI-----SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCc-----cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 4677777776532 1223344778888888999888876 6776654 8888899998888876 3453 56888
Q ss_pred ccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceee
Q 037340 646 LYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQI 725 (1276)
Q Consensus 646 L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i 725 (1276)
|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|++..+..
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------------- 200 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL--------------------- 200 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC---------------------
Confidence 88888888865567788888888888888888874456777777777777775432210
Q ss_pred ecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCC-CCCccCCCC
Q 037340 726 SMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGT-KFPVWLGDP 804 (1276)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~ 804 (1276)
....+..+..+++|+.|++.++... .+|..+.
T Consensus 201 ---------------------------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-- 233 (968)
T PLN00113 201 ---------------------------------------------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-- 233 (968)
T ss_pred ---------------------------------------------cCcCChHHcCcCCccEEECcCCccCCcCChhHh--
Confidence 0011222334556677777666543 4555554
Q ss_pred CCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccc
Q 037340 805 SFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQ 883 (1276)
Q Consensus 805 ~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 883 (1276)
.+++|+.|++++|.+.+.+|. ++++++|+.|++++|.....++..+. .+++|+.|++++|.. ....+.
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l-~~~~p~---- 302 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF------SLQKLISLDLSDNSL-SGEIPE---- 302 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh------hccCcCEEECcCCee-ccCCCh----
Confidence 467777777777776655554 66777777777776643222222221 145555555555431 111111
Q ss_pred cccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCc--ccccccccCCCccEEEE
Q 037340 884 AVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRR--VVFSSLINFSSLKSIFL 961 (1276)
Q Consensus 884 ~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L 961 (1276)
.+..+++|+.|++++|. +.+.+| ..+..+++|+.|++++|.. ..+..+..+++|+.|++
T Consensus 303 ~~~~l~~L~~L~l~~n~-~~~~~~------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 303 LVIQLQNLEILHLFSNN-FTGKIP------------------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred hHcCCCCCcEEECCCCc-cCCcCC------------------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 13345555555555532 332222 2233455666666666652 22344555666666666
Q ss_pred ccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccc
Q 037340 962 RDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQ 1041 (1276)
Q Consensus 962 ~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~ 1041 (1276)
++|.....+ +..+..+++|+.|++++|.....+|.. +..++ +|+
T Consensus 364 s~n~l~~~~-----------------------------p~~~~~~~~L~~L~l~~n~l~~~~p~~------~~~~~-~L~ 407 (968)
T PLN00113 364 STNNLTGEI-----------------------------PEGLCSSGNLFKLILFSNSLEGEIPKS------LGACR-SLR 407 (968)
T ss_pred CCCeeEeeC-----------------------------ChhHhCcCCCCEEECcCCEecccCCHH------HhCCC-CCC
Confidence 666522111 223334445555555544222111100 00111 333
Q ss_pred eEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCC
Q 037340 1042 FLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHN 1121 (1276)
Q Consensus 1042 ~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~ 1121 (1276)
.|++.+|. ....+|..+..+++|+.|++++|...+.+|..+..
T Consensus 408 ~L~L~~n~-------------------------------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 408 RVRLQDNS-------------------------------------FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred EEECcCCE-------------------------------------eeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 33333221 11123444556778999999999888888888888
Q ss_pred CCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCC--CccCCCCCCCcCeee
Q 037340 1122 LTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPD--LVSSPRFPASLTELK 1199 (1276)
Q Consensus 1122 l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~--~~~~~~~~~~L~~L~ 1199 (1276)
+++|+.|++++|...+.+|.....++|+.|++++|.+.+..|.. +.++++|+.|+|++|... +......+++|++|+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChh-hhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 99999999999997777776655688999999999998887765 788999999999997432 111223678999999
Q ss_pred ccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCC-CCccccccccccCChhH
Q 037340 1200 ISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQ-GLPKSLLRLIIDECPLI 1253 (1276)
Q Consensus 1200 l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~l~~~L~~L~i~~cp~l 1253 (1276)
|++|...+.+|..+..+++|++|++++|.....+|.. .-.++|+.|++++|+..
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 9999888889988999999999999999866677763 22468999999999864
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2.2e-28 Score=252.89 Aligned_cols=105 Identities=31% Similarity=0.417 Sum_probs=82.9
Q ss_pred HhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccc
Q 037340 592 QMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLH 671 (1276)
Q Consensus 592 ~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 671 (1276)
+++.++..|.||++.+|.+.++|.+|+.+..++.|+.++|++.++|+.++.+..|..|+.++| .+.++|++++.+..|.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLE 140 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhh
Confidence 347778888888888888888888888888888888888888888888888888888888887 6777778888888888
Q ss_pred eeecccccccccCccccCCccccccCC
Q 037340 672 HLINFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
.|+..+|. +.++|.+++.+.+|..|.
T Consensus 141 dl~~~~N~-i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 141 DLDATNNQ-ISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred hhhccccc-cccCchHHHHHHHHHHhh
Confidence 88877777 778887777777666664
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.7e-27 Score=246.36 Aligned_cols=251 Identities=23% Similarity=0.233 Sum_probs=149.1
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
..|..|++++|.+..+.+.+.+|..|.+|++.+|++.++|.+|+.+..++.|++++| .+..+|+.++++.+|++|+.+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccc
Confidence 446677888888888877788888888888888888888888888888888888888 7788888888888888888888
Q ss_pred ccccccCccccCCccccccCCceEeccCC-CCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEec
Q 037340 678 VLSLKEMPKGFGKLTCLLTLRRFVVGKDS-GSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWS 756 (1276)
Q Consensus 678 ~~~l~~lp~~i~~L~~L~~L~~~~~~~~~-~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 756 (1276)
|. ...+|++|+.+..|..|+...+...+ ...+..+.++..+ .+.++
T Consensus 124 n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l--------------------------------~~~~n 170 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL--------------------------------DLEGN 170 (565)
T ss_pred cc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh--------------------------------hcccc
Confidence 87 77888888888888777654443221 1112222222111 11111
Q ss_pred CCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceee
Q 037340 757 ARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLE 836 (1276)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 836 (1276)
.. ...++..-....|++|+...+....+|..++ .+.+|..|+|..|.+ ..+|.|+.+..|++|.
T Consensus 171 ~l-------------~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh 234 (565)
T KOG0472|consen 171 KL-------------KALPENHIAMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNKI-RFLPEFPGCSLLKELH 234 (565)
T ss_pred ch-------------hhCCHHHHHHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhccc-ccCCCCCccHHHHHHH
Confidence 10 0000011112344445555555555555554 355555566655553 3345566666666666
Q ss_pred ecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCC
Q 037340 837 ISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPL 912 (1276)
Q Consensus 837 L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~ 912 (1276)
+..| .++.++.+.... +++|..|++.++ ++++.+.+ ..-+.+|++|++++ +.++ .+|..+++
T Consensus 235 ~g~N-~i~~lpae~~~~-----L~~l~vLDLRdN-klke~Pde-----~clLrsL~rLDlSN-N~is-~Lp~sLgn 296 (565)
T KOG0472|consen 235 VGEN-QIEMLPAEHLKH-----LNSLLVLDLRDN-KLKEVPDE-----ICLLRSLERLDLSN-NDIS-SLPYSLGN 296 (565)
T ss_pred hccc-HHHhhHHHHhcc-----cccceeeecccc-ccccCchH-----HHHhhhhhhhcccC-Cccc-cCCccccc
Confidence 6544 445554444333 566666666665 33333222 33455666666666 4455 45544444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-24 Score=233.59 Aligned_cols=352 Identities=20% Similarity=0.241 Sum_probs=215.2
Q ss_pred HhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcc
Q 037340 772 TCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEF 850 (1276)
Q Consensus 772 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~ 850 (1276)
...++.+..+++|+++++..|....+|.+.. ...+|+.|+|.+|.+...-.. +..+|.|+.|+|+.| .+.+++...
T Consensus 92 ~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~--~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~s 168 (873)
T KOG4194|consen 92 HIDFEFFYNLPNLQEVNLNKNELTRIPRFGH--ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPS 168 (873)
T ss_pred cCcHHHHhcCCcceeeeeccchhhhcccccc--cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCC
Confidence 3445566678889999998888888888765 456788899988876544333 777888888998887 555555433
Q ss_pred cCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccC
Q 037340 851 YGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQC 930 (1276)
Q Consensus 851 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~ 930 (1276)
+. .=+++++|+|.++. +.......|.++.+|..|.|+. +.++ .+|. ..|.+
T Consensus 169 fp-----~~~ni~~L~La~N~-----It~l~~~~F~~lnsL~tlkLsr-Nrit-tLp~-----------------r~Fk~ 219 (873)
T KOG4194|consen 169 FP-----AKVNIKKLNLASNR-----ITTLETGHFDSLNSLLTLKLSR-NRIT-TLPQ-----------------RSFKR 219 (873)
T ss_pred CC-----CCCCceEEeecccc-----ccccccccccccchheeeeccc-Cccc-ccCH-----------------HHhhh
Confidence 22 13468888888874 2222223466777888888877 5566 4553 34566
Q ss_pred CCCccEEEEccCCcc--cccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCC
Q 037340 931 LPVLSELHIDGCRRV--VFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISS 1008 (1276)
Q Consensus 931 l~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 1008 (1276)
++.|+.|+|..|... ....|.++++|+.|.|..|.... +....+-.+.+++.|++....-... ...++.++++
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~ 294 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTS 294 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccceeecccchhhhh----hcccccccch
Confidence 777777777777622 24566777777777777776322 2222222344444444433221111 1345566677
Q ss_pred cceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCC
Q 037340 1009 LNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNL 1088 (1276)
Q Consensus 1009 L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l 1088 (1276)
|+.|++|+| .++.+.+..+
T Consensus 295 L~~L~lS~N---------------------aI~rih~d~W---------------------------------------- 313 (873)
T KOG4194|consen 295 LEQLDLSYN---------------------AIQRIHIDSW---------------------------------------- 313 (873)
T ss_pred hhhhccchh---------------------hhheeecchh----------------------------------------
Confidence 777777665 3333332221
Q ss_pred cccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCC--CCCCCceeEeecCCCCcccccc-
Q 037340 1089 ESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDG--FPTNLQSLEFEDLKISKPLFQW- 1165 (1276)
Q Consensus 1089 ~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~- 1165 (1276)
.-+++|++|+|++|.....-++.|..|..|++|++++|. +.++.++. .+.+|++|||++|.+...+.+.
T Consensus 314 -------sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa 385 (873)
T KOG4194|consen 314 -------SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA 385 (873)
T ss_pred -------hhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch
Confidence 124688888888885555555677888888888888888 77776653 3678888888888776544332
Q ss_pred -ccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCCCCcccCCCC-Ccccc
Q 037340 1166 -GLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCPKLKYFSKQG-LPKSL 1242 (1276)
Q Consensus 1166 -~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~-l~~~L 1242 (1276)
.+.++++|+.|++.|| .++.||. ++.+++.|+.|++.+|+ |.++...+ -+..|
T Consensus 386 ~~f~gl~~LrkL~l~gN-----------------------qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~L 441 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTGN-----------------------QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMEL 441 (873)
T ss_pred hhhccchhhhheeecCc-----------------------eeeecchhhhccCcccceecCCCCc-ceeecccccccchh
Confidence 2556666666666663 4555543 34566666666666664 33333322 23455
Q ss_pred ccccccCChhH
Q 037340 1243 LRLIIDECPLI 1253 (1276)
Q Consensus 1243 ~~L~i~~cp~l 1253 (1276)
++|.+.--..|
T Consensus 442 k~Lv~nSssfl 452 (873)
T KOG4194|consen 442 KELVMNSSSFL 452 (873)
T ss_pred hhhhhcccceE
Confidence 55555443333
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.4e-25 Score=252.73 Aligned_cols=440 Identities=20% Similarity=0.148 Sum_probs=267.3
Q ss_pred CCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 596 NLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
+.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|+.|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhccccccc
Confidence 34448888888888888888888888888888888888888888888888888888877 78888888888888888888
Q ss_pred ccccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEe
Q 037340 676 FNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEW 755 (1276)
Q Consensus 676 ~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 755 (1276)
+.|. ...+|..+..++.+..+...++.
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~~~s~N~---------------------------------------------------- 148 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEELAASNNE---------------------------------------------------- 148 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHHhhhcch----------------------------------------------------
Confidence 8887 66777666555544444211100
Q ss_pred cCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcce
Q 037340 756 SARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKH 834 (1276)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~ 834 (1276)
.++. ++ -..++.+++..+.+...++. ++.+.. .
T Consensus 149 ---------------------------~~~~----------lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ 182 (1081)
T KOG0618|consen 149 ---------------------------KIQR----------LG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--Q 182 (1081)
T ss_pred ---------------------------hhhh----------hc-------cccchhhhhhhhhcccchhcchhhhhe--e
Confidence 0000 00 01145566666665554443 444433 4
Q ss_pred eeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCcc
Q 037340 835 LEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLK 914 (1276)
Q Consensus 835 L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~ 914 (1276)
|+|.+|... .... ..+++|+.|....+. +..+. -.-++|+.|+..+|+-.+ ..
T Consensus 183 ldLr~N~~~-~~dl--------s~~~~l~~l~c~rn~-ls~l~--------~~g~~l~~L~a~~n~l~~-~~-------- 235 (1081)
T KOG0618|consen 183 LDLRYNEME-VLDL--------SNLANLEVLHCERNQ-LSELE--------ISGPSLTALYADHNPLTT-LD-------- 235 (1081)
T ss_pred eecccchhh-hhhh--------hhccchhhhhhhhcc-cceEE--------ecCcchheeeeccCccee-ec--------
Confidence 888877433 2111 125556655554432 11111 123555555555544211 11
Q ss_pred EEEEecccCccccccCCCCccEEEEccCCc-ccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCc
Q 037340 915 KLVIVGCEQLLVTIQCLPVLSELHIDGCRR-VVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQT 993 (1276)
Q Consensus 915 ~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 993 (1276)
..+...+|+++++++|.. ..+..+..+.+|+.+...+|.- ..++..+ ...++|+.|.+.+|.- .
T Consensus 236 ------------~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri-~~~~~L~~l~~~~nel-~ 300 (1081)
T KOG0618|consen 236 ------------VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRI-SRITSLVSLSAAYNEL-E 300 (1081)
T ss_pred ------------cccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHH-hhhhhHHHHHhhhhhh-h
Confidence 112234788999999883 3357788899999999999873 2222222 1344555555554432 1
Q ss_pred cccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccc
Q 037340 994 YLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPA 1073 (1276)
Q Consensus 994 ~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~ 1073 (1276)
. .+.....+.+|++|++..| ++.++|+ ..+...+.++..|+
T Consensus 301 y----ip~~le~~~sL~tLdL~~N-~L~~lp~-----~~l~v~~~~l~~ln----------------------------- 341 (1081)
T KOG0618|consen 301 Y----IPPFLEGLKSLRTLDLQSN-NLPSLPD-----NFLAVLNASLNTLN----------------------------- 341 (1081)
T ss_pred h----CCCcccccceeeeeeehhc-cccccch-----HHHhhhhHHHHHHh-----------------------------
Confidence 1 2555677899999999886 5555552 11111111122222
Q ss_pred cccceEEEecCCCCCcccCCCC-CCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCce
Q 037340 1074 TLEHLEIRVDGWPNLESFPEEG-LPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQS 1150 (1276)
Q Consensus 1074 ~L~~L~l~~~~~~~l~~~p~~~-~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~ 1150 (1276)
..++.+...|... ..++.|+.|.+.+|.........+.++.+|+.|++++|. +.++|.. ..+..|++
T Consensus 342 ---------~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 342 ---------VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEE 411 (1081)
T ss_pred ---------hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHH
Confidence 2233344444222 235678999999998887766678888999999999988 8888865 34567888
Q ss_pred eEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCc-cccCCCCCCCCcCceeccCCCC
Q 037340 1151 LEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLE-RLSSIGENLTSLKFLDLDNCPK 1229 (1276)
Q Consensus 1151 L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~ 1229 (1276)
|+||+|.+.... . .+..+..|+.|...+|......-...+++|+.+|+|.|+.-. .+|..... ++|++||+++|+.
T Consensus 412 L~LSGNkL~~Lp-~-tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 412 LNLSGNKLTTLP-D-TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred Hhcccchhhhhh-H-HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 888888876544 2 266777777777766543322222256677777777644222 12322211 6777777777764
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-23 Score=227.17 Aligned_cols=321 Identities=21% Similarity=0.214 Sum_probs=173.8
Q ss_pred eEEEEecCcccccc-CcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhh-ccccCCccccceeeccc
Q 037340 600 LRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 600 Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~ 677 (1276)
-+.||+++|.++++ +..|.++++|+.+++..|.++.+|.......+|+.|+|.+| .+..+ .+.+..++.||.|||+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 34566666666655 45566666666666666666666665555666666666666 33333 23455666666666666
Q ss_pred ccccccCccc-cCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEec
Q 037340 678 VLSLKEMPKG-FGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWS 756 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 756 (1276)
|. +..+|.. +..- .+++.|.+..+
T Consensus 159 N~-is~i~~~sfp~~------------------------------------------------------~ni~~L~La~N 183 (873)
T KOG4194|consen 159 NL-ISEIPKPSFPAK------------------------------------------------------VNIKKLNLASN 183 (873)
T ss_pred ch-hhcccCCCCCCC------------------------------------------------------CCceEEeeccc
Confidence 65 5554421 1111 12222333222
Q ss_pred CCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCC-CCCCCCCCCccee
Q 037340 757 ARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTS-LPPVGQLLFLKHL 835 (1276)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L 835 (1276)
.. .......+..+.+|..|+++.|..+.+|...+. .+++|+.|+|..|.+... --.|..|++|+.|
T Consensus 184 ~I------------t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 184 RI------------TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred cc------------cccccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 21 001112223334566666666666666665542 466677777766664322 2236667777777
Q ss_pred eecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccE
Q 037340 836 EISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKK 915 (1276)
Q Consensus 836 ~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~ 915 (1276)
.+..|..-+--...|++ +.+++.|+|..+. +..... ....++.+|+.|++++ +.+.. +
T Consensus 251 klqrN~I~kL~DG~Fy~------l~kme~l~L~~N~-l~~vn~----g~lfgLt~L~~L~lS~-NaI~r-i--------- 308 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYG------LEKMEHLNLETNR-LQAVNE----GWLFGLTSLEQLDLSY-NAIQR-I--------- 308 (873)
T ss_pred hhhhcCcccccCcceee------ecccceeecccch-hhhhhc----ccccccchhhhhccch-hhhhe-e---------
Confidence 77666433322333443 5566666666653 211111 1133466666666666 32331 1
Q ss_pred EEEecccCccccccCCCCccEEEEccCC--cccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCc
Q 037340 916 LVIVGCEQLLVTIQCLPVLSELHIDGCR--RVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQT 993 (1276)
Q Consensus 916 L~i~~~~~l~~~~~~l~~L~~L~L~~~~--~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 993 (1276)
+ ...+...++|++|+|++|. .+....+..+..|+.|.|++|. +.......|..+++|+..+++.++
T Consensus 309 -h-------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns----i~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 309 -H-------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS----IDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred -e-------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc----hHHHHhhHHHHhhhhhhhcCcCCe
Confidence 1 1234556778888888877 3345567777788888888876 332222334444555555555666
Q ss_pred cccccc--cccCCCCCCcceEEEecCCCccccc
Q 037340 994 YLWQSE--TRLLHDISSLNQLQISGCSQLLSLV 1024 (1276)
Q Consensus 994 ~~~~~~--~~~~~~l~~L~~L~ls~c~~l~~~~ 1024 (1276)
+.|... ...|..+++|++|.+.+| ++.+++
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence 554432 335667778888877776 444444
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.1e-24 Score=233.32 Aligned_cols=177 Identities=19% Similarity=0.239 Sum_probs=136.5
Q ss_pred CCCceEEEEecCcccc--ccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 596 NLPRLRVFSLRGYCIS--KLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
-++..|-.|+++|.++ .+|.+...|..++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+...+..|++||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 4567788899999887 6899999999999999999999999999999999999999999 677787889999999999
Q ss_pred ecccccc-cccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceE
Q 037340 674 INFNVLS-LKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALL 752 (1276)
Q Consensus 674 ~l~~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 752 (1276)
.+..|.. -..+|..|-+|..|.+|++..+. |+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNq---------------L~-------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ---------------LR-------------------------------- 116 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhh---------------hh--------------------------------
Confidence 9888762 23678888888888777654432 11
Q ss_pred EEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCc
Q 037340 753 LEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFL 832 (1276)
Q Consensus 753 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 832 (1276)
.++..+....++-.|++++|.+.++|..+.. .+..|-.|+|++|.+....|.+..+.+|
T Consensus 117 --------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 117 --------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred --------------------hcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 1223333345666777888888888876653 5777788888888755544447788888
Q ss_pred ceeeecCCC
Q 037340 833 KHLEISGMD 841 (1276)
Q Consensus 833 ~~L~L~~~~ 841 (1276)
+.|.|++|+
T Consensus 176 qtL~Ls~NP 184 (1255)
T KOG0444|consen 176 QTLKLSNNP 184 (1255)
T ss_pred hhhhcCCCh
Confidence 888888875
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=3.5e-24 Score=245.42 Aligned_cols=117 Identities=24% Similarity=0.243 Sum_probs=99.8
Q ss_pred cccccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhh
Q 037340 562 LESICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSIN 641 (1276)
Q Consensus 562 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~ 641 (1276)
++.+.+.-+|.+|.+..+.. .+.+..+..+.+|+.|+++.|.|..+|.+++++.+|+||+|.+|....+|.++.
T Consensus 38 l~~~~~~v~L~~l~lsnn~~------~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQI------SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred hHHhhheeeeEEeecccccc------ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHH
Confidence 44555555688998887652 223334788999999999999999999999999999999999999999999999
Q ss_pred ccccccEEecCCccchhhhccccCCccccceeecccccccccCc
Q 037340 642 SLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMP 685 (1276)
Q Consensus 642 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 685 (1276)
.+++|++||+++| ....+|..+..++.+..+..++|..+..++
T Consensus 112 ~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg 154 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLG 154 (1081)
T ss_pred hhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence 9999999999999 788899999999999999999985455544
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.7e-23 Score=227.72 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=60.1
Q ss_pred ccccccceeeccCCccc--ccchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccc
Q 037340 618 GNLKHLRFLNLSGTSIQ--FLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLL 695 (1276)
Q Consensus 618 ~~L~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 695 (1276)
+-|+..|-.|+++|.++ .+|.++..++.++.|.|..+ .+..+|+.++.|.+|+||.+..|. +..+-..+..|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhH
Confidence 44566778899999887 78999999999999999887 789999999999999999999887 555543344444443
Q ss_pred c
Q 037340 696 T 696 (1276)
Q Consensus 696 ~ 696 (1276)
.
T Consensus 82 s 82 (1255)
T KOG0444|consen 82 S 82 (1255)
T ss_pred H
Confidence 3
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=3.3e-19 Score=233.04 Aligned_cols=430 Identities=20% Similarity=0.186 Sum_probs=243.4
Q ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCCcccccCCCCCcEEEcchHHHHHHHhhccceEeecccccccCCccc
Q 037340 463 IILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSKDASRFVMHDLINDLARWAAGELYFRMEDALAGENGQEF 542 (1276)
Q Consensus 463 li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~mHdli~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1276)
.+...+...+|+...+.-.|.+..+++-.+.+..-...+. ...+.+.+.-+.+...... .
T Consensus 471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~--~r~~l~~~~di~~vl~~~~------------------g 530 (1153)
T PLN03210 471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPG--EREFLVDAKDICDVLEDNT------------------G 530 (1153)
T ss_pred ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCC--cceeEeCHHHHHHHHHhCc------------------c
Confidence 4666677788876655567888888777777655432221 2234444443444332111 1
Q ss_pred CccceEEEEEecCCCcc-cccccccCCCCcceeeccccccCC-cchhhHHHHhcCCC-CceEEEEecCccccccCccccc
Q 037340 543 SQSLRHFSYIRGGYDGK-NRLESICGVKHLRTFLPMKLKYGG-TFLAWSVLQMLLNL-PRLRVFSLRGYCISKLPNEIGN 619 (1276)
Q Consensus 543 ~~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~-~~~~~~~~~~l~~l-~~Lr~L~L~~~~i~~lp~~i~~ 619 (1276)
...++++++........ .....+.++++|+.|.+....+.. .......+..|..+ ..||.|++.++.+..+|..| .
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~ 609 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-R 609 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-C
Confidence 23455555443221111 112457789999999886543211 11112333445555 46999999999999999888 5
Q ss_pred ccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCc
Q 037340 620 LKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 620 L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
..+|+.|+++++.+..+|..+..+++|++|++++|..+..+|. ++.+++|++|++.+|..+..+|..++++++|+.|.+
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 7999999999999999999999999999999999988888885 889999999999999889999999999999998865
Q ss_pred eEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCC
Q 037340 700 FVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILK 779 (1276)
Q Consensus 700 ~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 779 (1276)
..+.. +..+. ..+ .+++|+.|.++.+.... ..+ .
T Consensus 689 ~~c~~-----------L~~Lp-------------------~~i-~l~sL~~L~Lsgc~~L~------------~~p---~ 722 (1153)
T PLN03210 689 SRCEN-----------LEILP-------------------TGI-NLKSLYRLNLSGCSRLK------------SFP---D 722 (1153)
T ss_pred CCCCC-----------cCccC-------------------CcC-CCCCCCEEeCCCCCCcc------------ccc---c
Confidence 43221 11000 000 23455566555443200 000 0
Q ss_pred CCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeCCcccCCCCCCCC
Q 037340 780 PNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPF 859 (1276)
Q Consensus 780 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~ 859 (1276)
.+.+|+.|++.++....+|..+ .+++|+.|.+.++........+..+ .... ...+
T Consensus 723 ~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~~~~l~~~~~~l-----------------~~~~-----~~~~ 777 (1153)
T PLN03210 723 ISTNISWLDLDETAIEEFPSNL---RLENLDELILCEMKSEKLWERVQPL-----------------TPLM-----TMLS 777 (1153)
T ss_pred ccCCcCeeecCCCccccccccc---cccccccccccccchhhcccccccc-----------------chhh-----hhcc
Confidence 1346667777776666666554 3566666666554321100000000 0000 0013
Q ss_pred CCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCC--CCCCccEEEEecccCccccccCCCCccEE
Q 037340 860 PSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPE--RFPLLKKLVIVGCEQLLVTIQCLPVLSEL 937 (1276)
Q Consensus 860 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~--~l~~L~~L~i~~~~~l~~~~~~l~~L~~L 937 (1276)
++|+.|++++|+.+.+++.. ++.+++|+.|++++|+++. .+|. .+++|+.|.+.+|..+.......++|+.|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~s-----i~~L~~L~~L~Ls~C~~L~-~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSS-----IQNLHKLEHLEIENCINLE-TLPTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred ccchheeCCCCCCccccChh-----hhCCCCCCEEECCCCCCcC-eeCCCCCccccCEEECCCCCccccccccccccCEe
Confidence 44555555555444333222 3445555555555555554 3443 23445555555544432222223455566
Q ss_pred EEccCCcc-cccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCC
Q 037340 938 HIDGCRRV-VFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQ 992 (1276)
Q Consensus 938 ~L~~~~~~-~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 992 (1276)
++++|... .+..+..+++|+.|++++|..+..++... ..++.|+.|.+.+|..+
T Consensus 852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCCccc
Confidence 66655522 23345556666666666665554433322 23444555555555444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.56 E-value=1.2e-16 Score=166.72 Aligned_cols=101 Identities=25% Similarity=0.357 Sum_probs=59.7
Q ss_pred EEEEecCccccccC-cccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceeeccc
Q 037340 601 RVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFN 677 (1276)
Q Consensus 601 r~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~ 677 (1276)
..++|..|.|+.|| .+|+.+++||.||||+|.|+.+ |..|..|..|-.|.+.++..++.+|.+ |+.|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 34556666666665 4566666666666666666655 556666666666666554466666643 55666666666655
Q ss_pred ccccccCccc-cCCccccccCCceEe
Q 037340 678 VLSLKEMPKG-FGKLTCLLTLRRFVV 702 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L~~~~~ 702 (1276)
|. +..++.. +..|++|..|.++.+
T Consensus 150 n~-i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 150 NH-INCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred hh-hcchhHHHHHHhhhcchhcccch
Confidence 55 5555433 555555555555443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=5.6e-14 Score=169.10 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=64.3
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446688999999999998776 4899999999999999863 578999999998 77788753 46888899988
Q ss_pred ccccccCcc
Q 037340 678 VLSLKEMPK 686 (1276)
Q Consensus 678 ~~~l~~lp~ 686 (1276)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 87 777765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=3.6e-13 Score=162.25 Aligned_cols=115 Identities=26% Similarity=0.333 Sum_probs=84.7
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEe
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKI 1178 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~L 1178 (1276)
.+|+.|++++| .+..+|.. .++|+.|++++|. +..+|. .+.+|+.|++++|.+.... . ..++|+.|++
T Consensus 342 ~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~--l~~~L~~LdLs~N~Lt~LP-~----l~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDN-QLASLPTL---PSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNRLTSLP-V----LPSELKELMV 409 (788)
T ss_pred cccceEecCCC-ccCCCCCC---Ccccceehhhccc-cccCcc--cccccceEEecCCcccCCC-C----cccCCCEEEc
Confidence 47888888887 45566643 3467778888777 777775 3467888888888877532 2 1357888888
Q ss_pred cCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCC
Q 037340 1179 SGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1179 s~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
++|.. ..+|..+.+|+.|++++| .++.+|..+.++++|+.|++++|+
T Consensus 410 S~N~L--ssIP~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 410 SGNRL--TSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCcC--CCCCcchhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 88743 344555678899999984 577899888889999999999997
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=2.1e-11 Score=160.05 Aligned_cols=294 Identities=16% Similarity=0.179 Sum_probs=183.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKS 263 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~ 263 (1276)
...+|-|+.-.+.+. . ....+++.|+|++|.||||++.++... ++.++|+++.. ..+...+...
T Consensus 13 ~~~~~~R~rl~~~l~----~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLAKLS----G-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHHHHh----c-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHH
Confidence 345677765444442 2 135789999999999999999998752 23689999964 4466677777
Q ss_pred HHHHhhcccCC------------CCCcHHHHHHHHHHHhc--CCcceEeecCCCccCHhhHh-hhccCCCCCCCCcEEEE
Q 037340 264 ILRSIADDQIK------------DDDDLNSLQVKLKKQLS--GKKILLVLDDVWNENYENWS-ILSRPFGVGAPGSKIVV 328 (1276)
Q Consensus 264 i~~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~-~~~~~l~~~~~gs~ilv 328 (1276)
++..+...... ...+.......+...+. +.+++||+||+...+..... .+...+.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 77777532111 11222233333333332 67899999999654322323 22222223335678889
Q ss_pred Eecchhhh--hhcC-CCCceecC----CCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 037340 329 TTRNLGVA--ESMG-VDPAYQLK----ELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLR 401 (1276)
Q Consensus 329 Ttr~~~v~--~~~~-~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 401 (1276)
|||...-. .... .....++. +|+.+|+.++|........ -.+.+..|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 99984211 1111 12344555 8999999999986543211 235678899999999999999988775
Q ss_pred CCCChhHHHHHHhhhcccccc-cccchhHHHHHh-HhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCC
Q 037340 402 GRDDPRDWEFVLNTDIWNLRE-ESCNILPALRVS-YHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNG 479 (1276)
Q Consensus 402 ~~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~s-y~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 479 (1276)
....... ... +.+.. ....+...+.-. |+.||++.+..+...|+++ .|+.+.+-. +...
T Consensus 231 ~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~---- 291 (903)
T PRK04841 231 QNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE---- 291 (903)
T ss_pred hCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC----
Confidence 4422100 001 11111 122355554444 8999999999999999996 344332221 1111
Q ss_pred CCHHHHHHHHHHHHHhCCcccc-cCCCCCcEEEcchHHHHHHHhh
Q 037340 480 RKMEDLGREFVWELHSRSLFQQ-SSKDASRFVMHDLINDLARWAA 523 (1276)
Q Consensus 480 ~~~~~~~~~~~~~L~~~sll~~-~~~~~~~~~mHdli~~~~~~~~ 523 (1276)
+.+...+++|.+.+++.. .+.+..+|+.|++++++++...
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 224678999999999753 3334468999999999998765
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=1.5e-14 Score=151.20 Aligned_cols=264 Identities=20% Similarity=0.146 Sum_probs=160.8
Q ss_pred HHHh-cCCCCceEEEEecCcccccc-CcccccccccceeeccC-Ccccccchh-hhccccccEEecCCccchhhhccccC
Q 037340 590 VLQM-LLNLPRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSG-TSIQFLPDS-INSLYNLYTILLEDCYWLKKLCQDMG 665 (1276)
Q Consensus 590 ~~~~-l~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~ 665 (1276)
+++. |+.+++||.|||++|.|+.| |++|..|..|-.|-+-+ |+|+.+|+. |++|..||.|.+.-|..-....+.+.
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 3444 99999999999999999988 89999999987766665 999999986 89999999999998843333445689
Q ss_pred CccccceeecccccccccCcc-ccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCC--chhhhhhhc
Q 037340 666 NLTKLHHLINFNVLSLKEMPK-GFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKD--VGDASEAQL 742 (1276)
Q Consensus 666 ~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~--~~~~~~~~l 742 (1276)
.|++|..|.+.+|. +..++. .+..+..++++..-.+.......+..+....... ........-... ........+
T Consensus 162 dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~-~ietsgarc~~p~rl~~~Ri~q~ 239 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN-PIETSGARCVSPYRLYYKRINQE 239 (498)
T ss_pred Hhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhc-hhhcccceecchHHHHHHHhccc
Confidence 99999999999998 888887 4888888888865443322211222111110000 000000000000 000000000
Q ss_pred CCCCC---cCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCC-CccCCCCCCCceeEEEEccCC
Q 037340 743 NSKVN---LKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKF-PVWLGDPSFSKLVLLRVLSCG 818 (1276)
Q Consensus 743 ~~~~~---L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~ 818 (1276)
...+. ++++--..... ...........+..+++|++|++++|.++.+ +.|+. ....++.|.|..|+
T Consensus 240 ~a~kf~c~~esl~s~~~~~--------d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 240 DARKFLCSLESLPSRLSSE--------DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLTRNK 309 (498)
T ss_pred chhhhhhhHHhHHHhhccc--------cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhcCcch
Confidence 00011 11110000000 0000111122366788899999999888776 44554 57788888888888
Q ss_pred CCCCCC-CCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccc
Q 037340 819 MCTSLP-PVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQ 871 (1276)
Q Consensus 819 ~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 871 (1276)
+...-. .|..+.+|+.|+|.+| .++.+.+..|.. ..+|.+|.+-.++
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~-----~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT-----LFSLSTLNLLSNP 357 (498)
T ss_pred HHHHHHHhhhccccceeeeecCC-eeEEEecccccc-----cceeeeeehccCc
Confidence 643322 2777888899999888 455554444332 5577777776554
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-14 Score=131.92 Aligned_cols=85 Identities=29% Similarity=0.347 Sum_probs=64.5
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
+-.+.+...|-|++|+++.+|..|..|.+|+.|++++|+|+++|.+|+.|++|++|+++-| .+..+|.+|+.++-|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhh
Confidence 4445566667777888777777777888888888888888888877888888888877777 677777777777777777
Q ss_pred eccccc
Q 037340 674 INFNVL 679 (1276)
Q Consensus 674 ~l~~~~ 679 (1276)
++.+|.
T Consensus 108 dltynn 113 (264)
T KOG0617|consen 108 DLTYNN 113 (264)
T ss_pred hccccc
Confidence 777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=9.7e-15 Score=134.22 Aligned_cols=154 Identities=25% Similarity=0.249 Sum_probs=123.7
Q ss_pred cccccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhh
Q 037340 562 LESICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSIN 641 (1276)
Q Consensus 562 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~ 641 (1276)
+..+.++.+..-|.+.+++. ..+++.+..+++|++|++++|+|+++|.+|+.|++||.|+++-|++..+|..|+
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl------~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKL------TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cccccchhhhhhhhcccCce------eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 34445566666677776642 345666899999999999999999999999999999999999999999999999
Q ss_pred ccccccEEecCCccc-hhhhccccCCccccceeecccccccccCccccCCccccccCCceEeccCCCCCchhhccccccc
Q 037340 642 SLYNLYTILLEDCYW-LKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQ 720 (1276)
Q Consensus 642 ~L~~L~~L~l~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~ 720 (1276)
.++-|++||+++|.. -..+|..|..++.|+-|++++|. ..-+|..+|+|++||.|.+..++- .....+++.|++|+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lr 176 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLR 176 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHH
Confidence 999999999998832 24689999999999999999998 889999999999999997654432 23344555565555
Q ss_pred cceee
Q 037340 721 GTLQI 725 (1276)
Q Consensus 721 ~~L~i 725 (1276)
.++|
T Consensus 177 -elhi 180 (264)
T KOG0617|consen 177 -ELHI 180 (264)
T ss_pred -HHhc
Confidence 4443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2.5e-12 Score=156.44 Aligned_cols=244 Identities=19% Similarity=0.200 Sum_probs=151.2
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
.+...|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456889999999999998774 589999999999999998775 58999999998 6778887654 4799999999
Q ss_pred ccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecC
Q 037340 678 VLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSA 757 (1276)
Q Consensus 678 ~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 757 (1276)
|. +..+|..+. ++|+.|++..+ .
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N------------------------------------------------------~ 273 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHN------------------------------------------------------K 273 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCC------------------------------------------------------c
Confidence 88 777776543 23444422111 0
Q ss_pred CCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeee
Q 037340 758 RPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEI 837 (1276)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 837 (1276)
. . ..+..+ +++|+.|++++|....+|..+ .++|+.|++++|.+.. +|. .-.++|+.|.+
T Consensus 274 L------------~-~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l----p~sL~~L~Ls~N~Lt~-LP~-~l~~sL~~L~L 332 (754)
T PRK15370 274 I------------S-CLPENL--PEELRYLSVYDNSIRTLPAHL----PSGITHLNVQSNSLTA-LPE-TLPPGLKTLEA 332 (754)
T ss_pred c------------C-cccccc--CCCCcEEECCCCccccCcccc----hhhHHHHHhcCCcccc-CCc-cccccceeccc
Confidence 0 0 000011 136777777777777776543 2467788888877653 332 11357788888
Q ss_pred cCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEE
Q 037340 838 SGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLV 917 (1276)
Q Consensus 838 ~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~ 917 (1276)
++|. +..++..+ .++|+.|++++|. +..++.. ..++|+.|+|++| +++ .+|..++
T Consensus 333 s~N~-Lt~LP~~l--------~~sL~~L~Ls~N~-L~~LP~~-------lp~~L~~LdLs~N-~Lt-~LP~~l~------ 387 (754)
T PRK15370 333 GENA-LTSLPASL--------PPELQVLDVSKNQ-ITVLPET-------LPPTITTLDVSRN-ALT-NLPENLP------ 387 (754)
T ss_pred cCCc-cccCChhh--------cCcccEEECCCCC-CCcCChh-------hcCCcCEEECCCC-cCC-CCCHhHH------
Confidence 7763 34443321 3567777777763 3322111 1356777777774 355 4443221
Q ss_pred EecccCccccccCCCCccEEEEccCCccc-----ccccccCCCccEEEEccCC
Q 037340 918 IVGCEQLLVTIQCLPVLSELHIDGCRRVV-----FSSLINFSSLKSIFLRDIA 965 (1276)
Q Consensus 918 i~~~~~l~~~~~~l~~L~~L~L~~~~~~~-----~~~~~~l~~L~~L~L~~n~ 965 (1276)
.+|+.|++++|.... +.....++++..|++.+|+
T Consensus 388 --------------~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 --------------AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --------------HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 135555566555221 1122334667777777776
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=7.1e-13 Score=163.69 Aligned_cols=259 Identities=25% Similarity=0.281 Sum_probs=163.6
Q ss_pred ccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCcc--ccccCc-ccccccccceeeccCC-cccccchhh
Q 037340 565 ICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYC--ISKLPN-EIGNLKHLRFLNLSGT-SIQFLPDSI 640 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~L~~~-~i~~lp~~i 640 (1276)
..+....|...+..+. ......-...+.|++|-+.+|. +..++. .|..|++||+|||++| .+.+||++|
T Consensus 519 ~~~~~~~rr~s~~~~~-------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNK-------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred ccchhheeEEEEeccc-------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 3444556666665543 1122223344579999999886 667764 4788999999999976 678999999
Q ss_pred hccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceEec-cCCCCCchhhcccccc
Q 037340 641 NSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVG-KDSGSSLRELRSLMHL 719 (1276)
Q Consensus 641 ~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~L 719 (1276)
++|.+||+|+++++ .+..+|.++.+|++|.+|++..+..+..+|..+..|.+|++|.++... ..+...+.++.+|.+|
T Consensus 592 ~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 592 GELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred hhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 99999999999999 789999999999999999999988666666556779999999988765 3445667777777777
Q ss_pred ccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCc
Q 037340 720 QGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPV 799 (1276)
Q Consensus 720 ~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 799 (1276)
+ .+.+..... .....+..+..|.++...-... ..........+..+.+|+.|.|.++.+.+...
T Consensus 671 ~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~---------~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 671 E-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIE---------GCSKRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred h-hheeecchh------HhHhhhhhhHHHHHHhHhhhhc---------ccccceeecccccccCcceEEEEcCCCchhhc
Confidence 6 444421111 1111222222232221111000 00011233445567777888887777654322
Q ss_pred -cCCCC---C-CCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeC
Q 037340 800 -WLGDP---S-FSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVG 847 (1276)
Q Consensus 800 -~~~~~---~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~ 847 (1276)
|.... . |+++..+...+|.....+.+....|+|+.|.+..|..++.+.
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 22110 1 445555555566555555544455667777776666555543
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=5.9e-10 Score=130.45 Aligned_cols=302 Identities=14% Similarity=0.066 Sum_probs=176.9
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+..++||++|++++...+...- .+...+.+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 34579999999999999985432 1234456789999999999999999984322221224566666666778889999
Q ss_pred HHHHhhcc-cCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccC----HhhHhhhccCCCCCCCCc--EEEEEecchh
Q 037340 264 ILRSIADD-QIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNEN----YENWSILSRPFGVGAPGS--KIVVTTRNLG 334 (1276)
Q Consensus 264 i~~~l~~~-~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~----~~~~~~~~~~l~~~~~gs--~ilvTtr~~~ 334 (1276)
+++++... ......+.++..+.+.+.+. +++.+||+|+++.-. .+.+..+...+... .++ .+|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcc
Confidence 99998762 22233456667777777775 456899999996532 22333333322211 233 3566666544
Q ss_pred hhhhcC-------CCCceecCCCChhhHHHhhhhcccCCC--CCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh--c--
Q 037340 335 VAESMG-------VDPAYQLKELSNDDCLCVLTQISLGAR--DFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL--R-- 401 (1276)
Q Consensus 335 v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~-- 401 (1276)
+..... ....+.+.+++.++..+++...+.... ....+..+..+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 333221 124678999999999999987653221 112222233333433333566777877765432 1
Q ss_pred -CCC--ChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccCC--CceechHHHHHH--HHHcCCCc
Q 037340 402 -GRD--DPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVPK--DYEFQEEEIILL--WTAEGFLD 474 (1276)
Q Consensus 402 -~~~--~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~li~~--w~a~g~i~ 474 (1276)
+.. +.++...+.... -.....-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 111 344555444432 1223455688999998876655543221 123555554432 22221110
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCccccc
Q 037340 475 QEYNGRKMEDLGREFVWELHSRSLFQQS 502 (1276)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~L~~~sll~~~ 502 (1276)
...-......|+++|...++|...
T Consensus 335 ----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 ----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 011124457789999999998854
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=5e-12 Score=153.84 Aligned_cols=91 Identities=14% Similarity=0.240 Sum_probs=61.9
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
+.|+.|+|++|+++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 357777888887777776554 477888888887777776554 36777888877 5667776554 4677788777
Q ss_pred ccccccCccccCCccccccCC
Q 037340 678 VLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 678 ~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
|. +..+|..+. ++|+.|+
T Consensus 272 N~-L~~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLS 289 (754)
T ss_pred Cc-cCccccccC--CCCcEEE
Confidence 66 667766543 2455553
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=3.9e-09 Score=122.16 Aligned_cols=301 Identities=14% Similarity=0.104 Sum_probs=173.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh-ccc---ccEEEEEEcCCCCHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ-RHF---QIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~ 261 (1276)
..++||++|+++|..++.... .+...+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 478999999999999986422 12344678999999999999999999842111 111 135677777777788899
Q ss_pred HHHHHHhh---cccCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccC---HhhHhhhccCC--CC-CCCCcEEEEEe
Q 037340 262 KSILRSIA---DDQIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNEN---YENWSILSRPF--GV-GAPGSKIVVTT 330 (1276)
Q Consensus 262 ~~i~~~l~---~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~---~~~~~~~~~~l--~~-~~~gs~ilvTt 330 (1276)
..|++++. ........+..+....+.+.+. +++++||+|+++.-. .+....+.... .. .+....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999984 2222122344555555655553 567899999995531 11122222221 11 11233455555
Q ss_pred cchhhhhhcC-------CCCceecCCCChhhHHHhhhhcccCC-CCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHHh-
Q 037340 331 RNLGVAESMG-------VDPAYQLKELSNDDCLCVLTQISLGA-RDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGGLL- 400 (1276)
Q Consensus 331 r~~~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l- 400 (1276)
........+. ....+.+.+.+.++..+++...+... ......++..+.+..++....|.|- |+.++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443322111 12468899999999999998876421 1112233344455567777788884 443332221
Q ss_pred -c---CC--CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccC--CCceechHHHHHHHH--Hc
Q 037340 401 -R---GR--DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVP--KDYEFQEEEIILLWT--AE 470 (1276)
Q Consensus 401 -~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i~~~~li~~w~--a~ 470 (1276)
. +. -+.++...+.+.. -.....-++..||.+.+..+..++..- ++..+....+...+- ++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11 1233333333221 122344567899998887665554221 334466666666332 12
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCccccc
Q 037340 471 GFLDQEYNGRKMEDLGREFVWELHSRSLFQQS 502 (1276)
Q Consensus 471 g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 502 (1276)
.+ .. ....+.....++..|...|++...
T Consensus 323 ~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 10 112346678889999999999864
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.08 E-value=5.8e-09 Score=115.08 Aligned_cols=182 Identities=20% Similarity=0.173 Sum_probs=114.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH----H
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLK----K 288 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~----~ 288 (1276)
..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..++..++.+.. ..+.......+. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 468999999999999999999974321 111 12233 33455777888899988866532 222222223333 3
Q ss_pred Hh-cCCcceEeecCCCccCHhhHhhhccCCC---CCCCCcEEEEEecchhhhhhcC----------CCCceecCCCChhh
Q 037340 289 QL-SGKKILLVLDDVWNENYENWSILSRPFG---VGAPGSKIVVTTRNLGVAESMG----------VDPAYQLKELSNDD 354 (1276)
Q Consensus 289 ~l-~~kr~LlvlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtr~~~v~~~~~----------~~~~~~l~~L~~~~ 354 (1276)
.. .+++.++|+||+|......++.+..... .......|++|... .....+. ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 22 6788999999998876666666543221 11223344555543 2221111 13457899999999
Q ss_pred HHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 355 CLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
..+++.......+......--++..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999887654332211122235788999999999999999988775
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.07 E-value=1.4e-08 Score=118.69 Aligned_cols=295 Identities=20% Similarity=0.218 Sum_probs=190.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC-CCHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED-FDVSRVTKS 263 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~ 263 (1276)
....|-|.. +.+.|.. ....|++.|..++|.||||++-+.+. ....=..+.|.+..+. -++..+...
T Consensus 18 ~~~~v~R~r----L~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 18 PDNYVVRPR----LLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cccccccHH----HHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHH
Confidence 344555654 5555533 24689999999999999999999874 1222357899998754 467788888
Q ss_pred HHHHhhcccCC------------CCCcHHHHHHHHHHHhc--CCcceEeecCCCccCH----hhHhhhccCCCCCCCCcE
Q 037340 264 ILRSIADDQIK------------DDDDLNSLQVKLKKQLS--GKKILLVLDDVWNENY----ENWSILSRPFGVGAPGSK 325 (1276)
Q Consensus 264 i~~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~----~~~~~~~~~l~~~~~gs~ 325 (1276)
++..+....+. ...+...+.+.+...+. .++..+||||..-... .....+... ...+-.
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeE
Confidence 88888743321 23344445555555553 4689999999744322 223333333 336789
Q ss_pred EEEEecchhh---hhhcCCCCceecC----CCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 037340 326 IVVTTRNLGV---AESMGVDPAYQLK----ELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGG 398 (1276)
Q Consensus 326 ilvTtr~~~v---~~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 398 (1276)
.|||||...- +.---.+..+++. .++.+|+-++|...... +-....++.+.+..+|-+-|+..++=
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHH
Confidence 9999998532 2211122334443 58999999999876422 12245678899999999999999998
Q ss_pred HhcCCCChhHHHHHHhhhcccccccccchhHHH-HHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCcccc
Q 037340 399 LLRGRDDPRDWEFVLNTDIWNLREESCNILPAL-RVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEY 477 (1276)
Q Consensus 399 ~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~ 477 (1276)
.++...+.+.--..+. +....+...| .-=++.||+++|..++-+|+++.= . +.|+..-
T Consensus 236 a~~~~~~~~q~~~~Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L---------- 294 (894)
T COG2909 236 ALRNNTSAEQSLRGLS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL---------- 294 (894)
T ss_pred HccCCCcHHHHhhhcc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH----------
Confidence 8884433332222221 1111222222 234689999999999999998542 1 2333321
Q ss_pred CCCCHHHHHHHHHHHHHhCCcccc-cCCCCCcEEEcchHHHHHHHhhcc
Q 037340 478 NGRKMEDLGREFVWELHSRSLFQQ-SSKDASRFVMHDLINDLARWAAGE 525 (1276)
Q Consensus 478 ~~~~~~~~~~~~~~~L~~~sll~~-~~~~~~~~~mHdli~~~~~~~~~~ 525 (1276)
+-++.+..++++|.+++++-. -++...+|+.|.++.+|.+..-..
T Consensus 295 ---tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 ---TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 112447788999999998863 344678999999999998865543
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=9.5e-10 Score=119.03 Aligned_cols=196 Identities=22% Similarity=0.213 Sum_probs=99.9
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHH---
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSI--- 264 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 264 (1276)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 789999999999998653 3578999999999999999999983 3222223444444333322 222222
Q ss_pred -------HHHhhcccCC---------CCCcHHHHHHHHHHHh--cCCcceEeecCCCccC------HhhHhhhccCCCC-
Q 037340 265 -------LRSIADDQIK---------DDDDLNSLQVKLKKQL--SGKKILLVLDDVWNEN------YENWSILSRPFGV- 319 (1276)
Q Consensus 265 -------~~~l~~~~~~---------~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~------~~~~~~~~~~l~~- 319 (1276)
.+.+...... ...........+.+.+ .+++++||+||+.... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112111110 1112222223333333 2456999999994432 1111222222211
Q ss_pred -CCCCcEEEEEecchhhhhh--------cCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 320 -GAPGSKIVVTTRNLGVAES--------MGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 320 -~~~gs~ilvTtr~~~v~~~--------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
......+|++.....+... .+....+.+++++.+++++++........ .. +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELI--KL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhh--cc-cCCHHHHHHHHHHhCCCH
Confidence 1233344455444433332 12234599999999999999998653321 11 122456689999999999
Q ss_pred HHHHH
Q 037340 391 LAAKT 395 (1276)
Q Consensus 391 Lai~~ 395 (1276)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=3.7e-09 Score=119.22 Aligned_cols=278 Identities=16% Similarity=0.125 Sum_probs=152.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+|+|+++.++.+..++..... .....+.+.|+|++|+|||++|+.+++. ....+ .++.. ........+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~-~~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSG-PALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEec-ccccChHHHHHHH
Confidence 5799999999999888854221 1234567889999999999999999983 32222 11211 1112222233333
Q ss_pred HHhhcccCCCCCcH----HHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcC-
Q 037340 266 RSIADDQIKDDDDL----NSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMG- 340 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~- 340 (1276)
..+.....--.+++ ....+.+...+.+.+..+|+|+..+... +...++ +.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHHHH
Confidence 33321110000111 1123344555555566666666533110 111111 2345666777544333221
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhccc
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWN 419 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 419 (1276)
....+.+++++.++..+++.+.+..... .--++.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1346899999999999999988754332 22246788999999999965544444321 12111100 00
Q ss_pred cc-ccccchhHHHHHhHhcCcHHHHHHHh-hhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHH-HHHhC
Q 037340 420 LR-EESCNILPALRVSYHFLAPQLKQCFA-YCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVW-ELHSR 496 (1276)
Q Consensus 420 ~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 496 (1276)
.. ..-......+...|..|++..+..+. ....|+.+ .+..+.+.... .. ..+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHHc
Confidence 00 00012334456677888888887775 67777766 46655554332 11 1233454555 79999
Q ss_pred CcccccC
Q 037340 497 SLFQQSS 503 (1276)
Q Consensus 497 sll~~~~ 503 (1276)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997554
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.97 E-value=6.5e-09 Score=116.81 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=151.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+|||+++.++++..++..... .....+.+.++|++|+|||+||+.+++. ....+ ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCc-hhHHHHH
Confidence 3699999999999998864321 2234567889999999999999999873 32222 11211111111 1222223
Q ss_pred HHhhcccCCCCCcH----HHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcC-
Q 037340 266 RSIADDQIKDDDDL----NSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMG- 340 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~- 340 (1276)
..+.....--.++. ...++.+...+.+.+..+|+|+.+.. ..+ ...++ +.+-|.+||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHHh
Confidence 33221110000000 12234455566666666777765332 111 11122 2455666777644433221
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhccc
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWN 419 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~ 419 (1276)
....+.+++++.++..+++.+.+..... .--++.+..|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1346789999999999999987753321 1224667889999999997665444432 11100000000
Q ss_pred cc-ccccchhHHHHHhHhcCcHHHHHHHh-hhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHH-HHHhC
Q 037340 420 LR-EESCNILPALRVSYHFLAPQLKQCFA-YCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVW-ELHSR 496 (1276)
Q Consensus 420 ~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~ 496 (1276)
.. +.-......+...|..++++.+..+. ....++.+ .+..+.+.... . .....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------G------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------C------CCcchHHHhhhHHHHHc
Confidence 00 00011222255668888888887666 55667544 45544443322 1 11234666677 69999
Q ss_pred CcccccC
Q 037340 497 SLFQQSS 503 (1276)
Q Consensus 497 sll~~~~ 503 (1276)
+|+....
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997543
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.89 E-value=2.5e-07 Score=109.09 Aligned_cols=301 Identities=13% Similarity=0.091 Sum_probs=163.8
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh---hcccc--cEEEEEEcCCCCHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV---QRHFQ--IKAWTCVSEDFDVSR 259 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~~~~~~~~~~ 259 (1276)
+..+.|||+|+++|...|...-. +.....++.|+|++|+|||++++.|.+.... ..... .+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35788999999999999865322 2233467889999999999999999873211 11112 346777777778889
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc---CCcceEeecCCCccC---HhhHhhhccCCCCCCCCcEEEE--Eec
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLS---GKKILLVLDDVWNEN---YENWSILSRPFGVGAPGSKIVV--TTR 331 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlvlDdv~~~~---~~~~~~~~~~l~~~~~gs~ilv--Ttr 331 (1276)
++..|.+++...............+.+...+. ....+||||++..-. .+.+-.+... + ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecC
Confidence 99999999965443333333444444544442 223589999994421 1112222221 1 123555544 333
Q ss_pred ch--------hhhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 037340 332 NL--------GVAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGR 403 (1276)
Q Consensus 332 ~~--------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~ 403 (1276)
+. .+..+++ ...+...+.+.++-.+++.+.+......-.+..++-+|+.++...|-.-.||.++-.+....
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 22 2222222 23467799999999999998875432222333344445545544455556776666554332
Q ss_pred CC----hhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhccc-CC--CceechHHHHHHH--HHc--C-
Q 037340 404 DD----PRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLV-PK--DYEFQEEEIILLW--TAE--G- 471 (1276)
Q Consensus 404 ~~----~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~--~~~i~~~~li~~w--~a~--g- 471 (1276)
.. .++-..+.... ....+.-....||.+.|..+..+... -. ...++...+.... +++ |
T Consensus 990 egskVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 11 11211111111 11123334568898877655433322 11 2235444443332 222 1
Q ss_pred CCccccCCCCHHHHHHHHHHHHHhCCcccccC
Q 037340 472 FLDQEYNGRKMEDLGREFVWELHSRSLFQQSS 503 (1276)
Q Consensus 472 ~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 503 (1276)
.+. .....+....++.+|...|+|....
T Consensus 1060 ~iG----v~plTqRV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1060 YIG----MCSNNELFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hcC----CCCcHHHHHHHHHHHHhcCeEEecC
Confidence 111 1111226777888888888876543
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=7.6e-10 Score=126.17 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=9.8
Q ss_pred cCCCCccEEEEecCC
Q 037340 886 EGFPKLQMLSLVGCS 900 (1276)
Q Consensus 886 ~~~~~L~~L~l~~c~ 900 (1276)
..+++|+.|++++|.
T Consensus 20 ~~l~~L~~l~l~~~~ 34 (319)
T cd00116 20 PKLLCLQVLRLEGNT 34 (319)
T ss_pred HHHhhccEEeecCCC
Confidence 345667777777754
No 34
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=1.6e-08 Score=102.58 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=85.9
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHH---HHHHHHHHHhhcccCCCCCcHHHHHHHH
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVS---RVTKSILRSIADDQIKDDDDLNSLQVKL 286 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~l 286 (1276)
|++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+.... ...... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHH---HH
Confidence 58999999999999999999985333222 3455666665443322 3333333333221 111111 12
Q ss_pred HHH-hcCCcceEeecCCCccCH--h-----hHhhhc-cCCCC-CCCCcEEEEEecchhh---hhhcCCCCceecCCCChh
Q 037340 287 KKQ-LSGKKILLVLDDVWNENY--E-----NWSILS-RPFGV-GAPGSKIVVTTRNLGV---AESMGVDPAYQLKELSND 353 (1276)
Q Consensus 287 ~~~-l~~kr~LlvlDdv~~~~~--~-----~~~~~~-~~l~~-~~~gs~ilvTtr~~~v---~~~~~~~~~~~l~~L~~~ 353 (1276)
... .+.++++||+|++++-.. . .+..+. ..+.. ..++.+++||+|.... .........+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 257899999999844221 1 122222 22222 2468999999998655 334444567999999999
Q ss_pred hHHHhhhhc
Q 037340 354 DCLCVLTQI 362 (1276)
Q Consensus 354 ~~~~l~~~~ 362 (1276)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999998765
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.75 E-value=6.5e-09 Score=102.51 Aligned_cols=130 Identities=25% Similarity=0.230 Sum_probs=54.2
Q ss_pred cccCCCCcceeeccccccCCcchhhHHHHhcC-CCCceEEEEecCccccccCcccccccccceeeccCCcccccchhh-h
Q 037340 564 SICGVKHLRTFLPMKLKYGGTFLAWSVLQMLL-NLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSI-N 641 (1276)
Q Consensus 564 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~ 641 (1276)
.+.+..++|.|.+.++. ...++.+. .+.+|++|||++|.|+.++ .+..+++|++|++++|.|+.+++.+ .
T Consensus 14 ~~~n~~~~~~L~L~~n~-------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQ-------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccc-------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 34455567888887764 33344565 5788999999999999886 5888999999999999999987666 4
Q ss_pred ccccccEEecCCccchhhhc--cccCCccccceeecccccccccCcc----ccCCccccccCCceEec
Q 037340 642 SLYNLYTILLEDCYWLKKLC--QDMGNLTKLHHLINFNVLSLKEMPK----GFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 642 ~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~ 703 (1276)
.+++|++|++++| .+..+- ..+..+++|++|++.+|. +...+. -+..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6899999999998 555543 236678999999999988 655443 26778888888776654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=6.1e-10 Score=122.75 Aligned_cols=177 Identities=23% Similarity=0.281 Sum_probs=130.5
Q ss_pred HHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccc
Q 037340 591 LQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKL 670 (1276)
Q Consensus 591 ~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L 670 (1276)
+..+..|..|..|.|+.|.+..+|..+++|..|.||||+.|+++.+|..++.|+ |+.|.+++| +++.+|..++.+..|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTL 168 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhH
Confidence 333666777888888888888888889999999999999999988888888876 888888888 788888888888889
Q ss_pred ceeecccccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCc
Q 037340 671 HHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKA 750 (1276)
Q Consensus 671 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~ 750 (1276)
.+|+.+.|. +..+|..++.|.+|+.|.+..+..
T Consensus 169 ~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l---------------------------------------------- 201 (722)
T KOG0532|consen 169 AHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL---------------------------------------------- 201 (722)
T ss_pred HHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhh----------------------------------------------
Confidence 999888888 888888888888888775432210
Q ss_pred eEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC---CC
Q 037340 751 LLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP---VG 827 (1276)
Q Consensus 751 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~---l~ 827 (1276)
...++.+. .-.|..|++++|....+|..+. .+..|+.|.|.+|++...... -|
T Consensus 202 ---------------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 202 ---------------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred ---------------------hhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhcc
Confidence 00111111 1136778888888888888776 688888888888886542211 44
Q ss_pred CCCCcceeeecCC
Q 037340 828 QLLFLKHLEISGM 840 (1276)
Q Consensus 828 ~l~~L~~L~L~~~ 840 (1276)
...=.++|+..-|
T Consensus 258 kVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 258 KVHIFKYLSTQAC 270 (722)
T ss_pred ceeeeeeecchhc
Confidence 5555666776655
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=1.4e-09 Score=123.94 Aligned_cols=86 Identities=23% Similarity=0.171 Sum_probs=60.1
Q ss_pred cCCCCceEEEEecCcccc-----ccCcccccccccceeeccCCcccc-------cchhhhccccccEEecCCccchhhhc
Q 037340 594 LLNLPRLRVFSLRGYCIS-----KLPNEIGNLKHLRFLNLSGTSIQF-------LPDSINSLYNLYTILLEDCYWLKKLC 661 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~l~~lp 661 (1276)
+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 556666889999988874 356666777788888888876653 34456777888888888885433444
Q ss_pred cccCCccc---cceeeccccc
Q 037340 662 QDMGNLTK---LHHLINFNVL 679 (1276)
Q Consensus 662 ~~i~~L~~---L~~L~l~~~~ 679 (1276)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 44444444 8888888776
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=3.3e-10 Score=120.43 Aligned_cols=137 Identities=23% Similarity=0.281 Sum_probs=78.0
Q ss_pred CCCeeEEEEeecCCCCccc--ccCCCCCccceeeeccCCCCcccCCC---CCCCCCceeEeecCCCCccccccccCCCCC
Q 037340 1098 STKLTELMIWSCENLKALP--NSMHNLTSLLHLEIGRCPSLVSFPED---GFPTNLQSLEFEDLKISKPLFQWGLNRFNS 1172 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~ 1172 (1276)
+..|+.|..++|...+..+ .--.+..+|+.|.++.|..++..... ...+.|+.+++.+|.....
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d----------- 361 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD----------- 361 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-----------
Confidence 5567777777776654432 11245677777777777755443221 1234455555544432211
Q ss_pred cceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccc-----cCCCCCCCCcCceeccCCCCCcccCCCC--Cccccccc
Q 037340 1173 LRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERL-----SSIGENLTSLKFLDLDNCPKLKYFSKQG--LPKSLLRL 1245 (1276)
Q Consensus 1173 L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~l~~~~--l~~~L~~L 1245 (1276)
..+.+....++.|+.|.+++|..++.- ...-.++..|+.+.+++||.++.-.... .-++|+++
T Consensus 362 ----------~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 362 ----------GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred ----------hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 112233335677777777777776643 3233566778888888888776432222 23477778
Q ss_pred cccCChhHHH
Q 037340 1246 IIDECPLIEK 1255 (1276)
Q Consensus 1246 ~i~~cp~l~~ 1255 (1276)
++.+|....+
T Consensus 432 ~l~~~q~vtk 441 (483)
T KOG4341|consen 432 ELIDCQDVTK 441 (483)
T ss_pred eeechhhhhh
Confidence 8888766543
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.1e-09 Score=111.61 Aligned_cols=37 Identities=24% Similarity=0.125 Sum_probs=21.6
Q ss_pred CCCCcCeeeccCCCC--CccccCCCCCCCCcCceeccCCC
Q 037340 1191 FPASLTELKISDMPS--LERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1191 ~~~~L~~L~l~~~~~--l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
..++|++|++++|+. ..++. .+..+++|+.|.+..++
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccceeeecccCccccccccc-hhhccchhhhhhccccc
Confidence 346788888888654 22222 23455667777765443
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=1.7e-07 Score=99.27 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=97.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+.+.|+|++|+|||+||+.+++. .......+.|+++.... .... .+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc-
Confidence 467899999999999999999984 33334456676653210 0000 1111122
Q ss_pred CcceEeecCCCccC-HhhHhh-hccCCCCC-CCCcEEEEE-ecc---------hhhhhhcCCCCceecCCCChhhHHHhh
Q 037340 293 KKILLVLDDVWNEN-YENWSI-LSRPFGVG-APGSKIVVT-TRN---------LGVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 293 kr~LlvlDdv~~~~-~~~~~~-~~~~l~~~-~~gs~ilvT-tr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
+.-+||+||+|... ...|+. +...+... ..|..+||+ ++. +++..++.....+++++++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23599999998642 234542 22222211 235566554 443 356666666778999999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 360 TQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
.+.+....- .--+++..-|++++.|..-++..+-..+
T Consensus 171 ~~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988864331 1224677889999988776665444433
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1e-06 Score=110.37 Aligned_cols=308 Identities=13% Similarity=0.165 Sum_probs=176.1
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc---cccEEEEEEcCCC---CHHHHH
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH---FQIKAWTCVSEDF---DVSRVT 261 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~---~~~~~~ 261 (1276)
++||+.|++.|...+.... .+...++.+.|..|||||+++++|.. .+... |-...+-...... ...+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 6899999999999986543 35567999999999999999999998 33333 2111111122222 123344
Q ss_pred HHHHHHhhccc-------------------C-------------C--------CCCcHHH-----HHHHHHHHh-cCCcc
Q 037340 262 KSILRSIADDQ-------------------I-------------K--------DDDDLNS-----LQVKLKKQL-SGKKI 295 (1276)
Q Consensus 262 ~~i~~~l~~~~-------------------~-------------~--------~~~~~~~-----~~~~l~~~l-~~kr~ 295 (1276)
++++.++.... . . ....... .+..+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 45544441110 0 0 0000111 111222222 45699
Q ss_pred eEeecCCCccCHhhHhhhccCCCCCC----CCcEE--EEEecch--hhhhhcCCCCceecCCCChhhHHHhhhhcccCCC
Q 037340 296 LLVLDDVWNENYENWSILSRPFGVGA----PGSKI--VVTTRNL--GVAESMGVDPAYQLKELSNDDCLCVLTQISLGAR 367 (1276)
Q Consensus 296 LlvlDdv~~~~~~~~~~~~~~l~~~~----~gs~i--lvTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 367 (1276)
++|+||+...+....+-+........ .-..| +.|.+.. .+-..-.....+.+.||+..+...+.........
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~ 236 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK 236 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc
Confidence 99999994443333333221111110 01122 2333322 2222223446799999999999999887654322
Q ss_pred CCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCC------CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHH
Q 037340 368 DFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGR------DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQ 441 (1276)
Q Consensus 368 ~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 441 (1276)
....+....|+++..|+|+.+.-+-..+... .+...|..-..+. ......+.+...+..-.+.||..
T Consensus 237 -----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 237 -----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred -----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHH
Confidence 2334678889999999999999998888764 2334454322111 01111122555688889999999
Q ss_pred HHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCCccccc-----CCCCC---cEEEcc
Q 037340 442 LKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQS-----SKDAS---RFVMHD 513 (1276)
Q Consensus 442 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~-----~~~~~---~~~mHd 513 (1276)
.|..+-..|++... |+.+.|...|-. ....++....+.|....++... ..... +-..||
T Consensus 310 t~~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~ 376 (849)
T COG3899 310 TREVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHD 376 (849)
T ss_pred HHHHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHH
Confidence 99999999999755 556666665421 2345566655555554444321 11111 125788
Q ss_pred hHHHHHH
Q 037340 514 LINDLAR 520 (1276)
Q Consensus 514 li~~~~~ 520 (1276)
.+++.+-
T Consensus 377 ~vqqaaY 383 (849)
T COG3899 377 RVQQAAY 383 (849)
T ss_pred HHHHHHh
Confidence 8888875
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=4.5e-08 Score=114.80 Aligned_cols=107 Identities=30% Similarity=0.342 Sum_probs=95.4
Q ss_pred cCCCCceEEEEecCccccccCccccccc-ccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLK-HLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
+..++.+..|++.++.++++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 5566889999999999999998888885 999999999999999999999999999999999 88999988889999999
Q ss_pred eecccccccccCccccCCccccccCCceEe
Q 037340 673 LINFNVLSLKEMPKGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 673 L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 702 (1276)
|++++|. +..+|..++.+..|++|....+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 9999998 9999987777777887765443
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.57 E-value=1.8e-07 Score=103.40 Aligned_cols=94 Identities=24% Similarity=0.416 Sum_probs=54.3
Q ss_pred CCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEe
Q 037340 1003 LHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRV 1082 (1276)
Q Consensus 1003 ~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 1082 (1276)
+..+.+++.|++++| .++++| .+|.+|++|.+++|.++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP----------~LP~sLtsL~Lsnc~nL------------------------------- 85 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP----------VLPNELTEITIENCNNL------------------------------- 85 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC----------CCCCCCcEEEccCCCCc-------------------------------
Confidence 334577888888888 666655 56667777776665433
Q ss_pred cCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeec
Q 037340 1083 DGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFED 1155 (1276)
Q Consensus 1083 ~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 1155 (1276)
+.+|..+ .++|+.|++++|..+..+|. +|++|++..+. ...++ .+|++|+.|.+.+
T Consensus 86 ------tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~-~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 86 ------TTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSA-TDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred ------ccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCC-Ccccc--cCcchHhheeccc
Confidence 2222211 14677777777766666663 35555665332 33332 3455677777643
No 44
>PTZ00202 tuzin; Provisional
Probab=98.57 E-value=9.1e-06 Score=89.12 Aligned_cols=170 Identities=13% Similarity=0.157 Sum_probs=104.6
Q ss_pred ccccCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHH
Q 037340 181 SLVNEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 181 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1276)
.+.+.+.|+||+.|.+++...|...+. ...+++.|+|++|+|||||++.+..... + .+++.... +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHH
Confidence 344567899999999999999965432 3456999999999999999999986322 1 23333333 67999
Q ss_pred HHHHHHHhhcccCCC-CCcHHHHHHHHHHHh-c-CCcceEeecCCCccC-HhhHhhhccCCCCCCCCcEEEEEecchhhh
Q 037340 261 TKSILRSIADDQIKD-DDDLNSLQVKLKKQL-S-GKKILLVLDDVWNEN-YENWSILSRPFGVGAPGSKIVVTTRNLGVA 336 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~l-~-~kr~LlvlDdv~~~~-~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 336 (1276)
++.++.+++.+.... .+-.+.+++.+.+.- . +++.+||+-=-...+ ...+.+.. .+.+...-|+|++----+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence 999999999743211 223344455554433 2 677777764221111 12222222 233444567888765544332
Q ss_pred hhcC---CCCceecCCCChhhHHHhhhhc
Q 037340 337 ESMG---VDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 337 ~~~~---~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
.... --.-|-+.+++.++|.++....
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2111 1234788899999998876554
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.56 E-value=1.2e-06 Score=102.00 Aligned_cols=178 Identities=19% Similarity=0.220 Sum_probs=106.5
Q ss_pred CeeecchhhHHH---HHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKEA---IVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
.++||++..+.. +..++.. ...+.+.++|++|+||||+|+.+++. .... |+.++.......-.+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHHHH
Confidence 358888877655 7777743 34567889999999999999999873 3222 233322211111112
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEE--Eecchh--hhh
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVV--TTRNLG--VAE 337 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~--v~~ 337 (1276)
.+++ ..... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +..
T Consensus 79 ~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 2222 11111 246788999999987666666666655542 444554 344432 111
Q ss_pred hc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 037340 338 SM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGG 398 (1276)
Q Consensus 338 ~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 398 (1276)
.+ .-...+.+.+++.++..+++.+......... .+--.+..+.|++.++|.+..+.-+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 1236789999999999999988653211100 122246678899999999976654443
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.55 E-value=4.9e-07 Score=97.04 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=98.9
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
+.+....+||++|+||||||+.+.. .....| ..++...+-.+-++++++... +...
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a~-----------------~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEAR-----------------KNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHHH-----------------HHHh
Confidence 4577788999999999999999987 344444 334443333333333333221 2223
Q ss_pred cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEE--Eecchhhhh---hcCCCCceecCCCChhhHHHhhhhcccC
Q 037340 291 SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVV--TTRNLGVAE---SMGVDPAYQLKELSNDDCLCVLTQISLG 365 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~v~~---~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 365 (1276)
.+++.+|++|.|..-+..+-+.+...+. .|.-|+| ||.++...- -..-.+++.+++|+.++-.+++.+.+..
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 5899999999998766666666665554 5766665 677654321 1123478999999999999999984432
Q ss_pred CCCCCC--Cc-chHHHHHHHHHHcCCChHHH
Q 037340 366 ARDFNM--HQ-SLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 366 ~~~~~~--~~-~~~~~~~~i~~~~~g~PLai 393 (1276)
....-. .. --++....+++.++|---++
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 221111 11 12456677888888876543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=1.7e-09 Score=115.20 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=92.3
Q ss_pred ceeEEEEccCCCCCCCCC---CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCcccc
Q 037340 808 KLVLLRVLSCGMCTSLPP---VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQA 884 (1276)
Q Consensus 808 ~L~~L~L~~~~~~~~l~~---l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 884 (1276)
.|+.|.+.+|.-...-+. ..+.|++++|.+.+|..+....-.-+ ...+++|+.|.+..|.+++.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl----a~~C~~l~~l~L~~c~~iT~~~Lk~l--- 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSL----ARYCRKLRHLNLHSCSSITDVSLKYL--- 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHH----HHhcchhhhhhhcccchhHHHHHHHH---
Confidence 345555555554432221 34567777777777754433211111 12266777777777766655433211
Q ss_pred ccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCccccccc----ccCCCccEEE
Q 037340 885 VEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSSL----INFSSLKSIF 960 (1276)
Q Consensus 885 ~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~----~~l~~L~~L~ 960 (1276)
...+++|++|.++.|+.+++.- +.....+...++.+.+++|.......+ ..++-+.+++
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~g-----------------v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNG-----------------VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCc-----------------chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 3368888888888888776410 011122233344444445543332221 2234455555
Q ss_pred EccCCCcccchhh-hccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCccc
Q 037340 961 LRDIANQVVLAGL-FEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLS 1022 (1276)
Q Consensus 961 L~~n~~l~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~ 1022 (1276)
+.+|..++..... +...+..|+.|...+|...... ..-...++.++|+.|.+++|..++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhhh
Confidence 5566544332211 1123445555665555543321 1112234556777777777755443
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.4e-08 Score=107.19 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=111.4
Q ss_pred CCCCCCeeEEEEeecCCCCc--ccccCCCCCccceeeeccCCCCcccCC---CCCCCCCceeEeecCCCCccccccccCC
Q 037340 1095 GLPSTKLTELMIWSCENLKA--LPNSMHNLTSLLHLEIGRCPSLVSFPE---DGFPTNLQSLEFEDLKISKPLFQWGLNR 1169 (1276)
Q Consensus 1095 ~~~~~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 1169 (1276)
...|++++.|+|+.|=.... +-.....|++|+.|+|+.|. +..... ...+++|+.|.|+.|.++-....+.+..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34588999999999833322 22344679999999999998 432221 1457899999999999986666666788
Q ss_pred CCCcceEEecCCC-CCCccCCC-CCCCcCeeeccCCCCCcccc-CCCCCCCCcCceeccCCCCCccc--CCC------CC
Q 037340 1170 FNSLRKLKISGGF-PDLVSSPR-FPASLTELKISDMPSLERLS-SIGENLTSLKFLDLDNCPKLKYF--SKQ------GL 1238 (1276)
Q Consensus 1170 l~~L~~L~Ls~~~-~~~~~~~~-~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l--~~~------~l 1238 (1276)
+|+|+.|++.+|. ......+. .+..|++|||++|+.+..-. ...+.++.|+.|+++.| .+.++ |.. ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcc
Confidence 9999999999983 33333332 77899999999977655321 24488999999999988 45554 222 34
Q ss_pred ccccccccccCChh
Q 037340 1239 PKSLLRLIIDECPL 1252 (1276)
Q Consensus 1239 ~~~L~~L~i~~cp~ 1252 (1276)
.++|+.|.+..++-
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 57888888887654
No 49
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=5.4e-07 Score=86.92 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhc---ccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQR---HFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
.+++.|+|.+|+|||++++.+.+...... .-..++|+.+....+...+...++.+++.... ...+.+++.+.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLIDA 82 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHHH
Confidence 46899999999999999999998421110 02456799998888999999999999998765 345667777788888
Q ss_pred hcCCc-ceEeecCCCcc-CHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 290 LSGKK-ILLVLDDVWNE-NYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 290 l~~kr-~LlvlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
+...+ .+||+||+..- ....++.+..... ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 76554 59999999654 4444555544333 567778877764
No 50
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=6e-07 Score=97.32 Aligned_cols=291 Identities=17% Similarity=0.151 Sum_probs=177.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEE-EEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWT-CVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
..|.+.++|.|||||||++-.+.. +..-|...+|+ ....--+...+.-.....++-... +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 468899999999999999988876 55667655554 444444555555555555554432 2223444566677
Q ss_pred cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcCCCCceecCCCChh-hHHHhhhhcccCCC-C
Q 037340 291 SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMGVDPAYQLKELSND-DCLCVLTQISLGAR-D 368 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~~-~ 368 (1276)
.++|.++|+||.-+- .+.-..+...+..+...-.|+.|+|.... ...+....+..|+.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 889999999998321 11222223333334455578889886433 234566778888765 78888876543222 1
Q ss_pred CCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhccccc-------ccccchhHHHHHhHhcCcHH
Q 037340 369 FNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLR-------EESCNILPALRVSYHFLAPQ 441 (1276)
Q Consensus 369 ~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~-------~~~~~i~~~l~~sy~~L~~~ 441 (1276)
..-.......+..|.++.+|.|++|..+++..+.-. ...--..++.....+. ..+....+.+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 122233456788899999999999999999887763 2222222222111111 12246788999999999999
Q ss_pred HHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCCcccccCC-CCCcEEEcchHHHHHH
Q 037340 442 LKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSK-DASRFVMHDLINDLAR 520 (1276)
Q Consensus 442 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdli~~~~~ 520 (1276)
.+--|.-++.|...+.-. ...|.+.|--.. ...-.....+..+++.+++..... ....|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998776544 334444332210 011223444667788887765432 2334555555555554
Q ss_pred Hhh
Q 037340 521 WAA 523 (1276)
Q Consensus 521 ~~~ 523 (1276)
.+.
T Consensus 312 aeL 314 (414)
T COG3903 312 AEL 314 (414)
T ss_pred HHH
Confidence 433
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.7e-08 Score=111.61 Aligned_cols=170 Identities=23% Similarity=0.211 Sum_probs=127.9
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
..-...||+.|.+.++|..++.+..|..|.|..|.|..+|+.+++|..|.+||++.| .+..+|..++.|+ |+.|.+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 344568999999999999999999999999999999999999999999999999999 7899999998776 88999998
Q ss_pred ccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecC
Q 037340 678 VLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSA 757 (1276)
Q Consensus 678 ~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 757 (1276)
|+ ++.+|.+|+.+..|..|+...+...
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~---------------------------------------------------- 179 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQ---------------------------------------------------- 179 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhhhh----------------------------------------------------
Confidence 88 9999999997777777754433210
Q ss_pred CCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceee
Q 037340 758 RPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLE 836 (1276)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~ 836 (1276)
..+..+..+..|+.|.+..+....+|..+.+ -.|..|+++.|.+. .+|. |.++..|++|.
T Consensus 180 ---------------slpsql~~l~slr~l~vrRn~l~~lp~El~~---LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 180 ---------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS---LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred ---------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC---CceeeeecccCcee-ecchhhhhhhhheeee
Confidence 0111122233445555566666667766542 25777888776644 3444 77788888888
Q ss_pred ecCCC
Q 037340 837 ISGMD 841 (1276)
Q Consensus 837 L~~~~ 841 (1276)
|.+|+
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 87775
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.5e-06 Score=92.85 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=114.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcch----hhhcccccEEEEEE-cCCCCHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDD----RVQRHFQIKAWTCV-SEDFDVSRV 260 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 260 (1276)
.+++|-+..++.+..++..+ .-.+...++|+.|+||||+|+.+++.. ....|+|...|... +....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998543 234577899999999999999998721 12345555555442 22222222
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhh-hhc
Q 037340 261 TKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVA-ESM 339 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~-~~~ 339 (1276)
.+++.+.+.... ..+++-++|+|++...+...+..+...+.....++.+|++|.+.+.. ..+
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 222333222111 12455677777776566678888988888777888999888764322 111
Q ss_pred -CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 340 -GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 340 -~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
.-.+.+.+.++++++....+.+...+ . -.+.++.++..++|.|..+.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-I-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-C-------CHHHHHHHHHHcCCCHHHHH
Confidence 12367899999999998877654311 0 12446778899999887554
No 53
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=1e-07 Score=94.14 Aligned_cols=102 Identities=27% Similarity=0.372 Sum_probs=35.2
Q ss_pred cCCCCceEEEEecCccccccCcccc-cccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccC-Cccccc
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIG-NLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMG-NLTKLH 671 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~-~L~~L~ 671 (1276)
+.+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..+++.+. .+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 455667899999999999874 465 6889999999999999985 5889999999999999 7777765553 689999
Q ss_pred eeecccccccccCcc--ccCCccccccCCc
Q 037340 672 HLINFNVLSLKEMPK--GFGKLTCLLTLRR 699 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~--~i~~L~~L~~L~~ 699 (1276)
+|++++|. +..+-. .+..+++|+.|++
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 99999988 766532 2334444444443
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.35 E-value=3.4e-06 Score=90.24 Aligned_cols=171 Identities=17% Similarity=0.163 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhc
Q 037340 191 REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIAD 270 (1276)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1276)
.+..++++.+++.. ...+.+.|+|+.|+|||++|+.+++. ........++++++.-.+.. ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---PE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---HH-------
Confidence 45566777777532 34578899999999999999999973 33233344555543221100 00
Q ss_pred ccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHh-hH-hhhccCCCC-CCCCcEEEEEecchh---------hhhh
Q 037340 271 DQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYE-NW-SILSRPFGV-GAPGSKIVVTTRNLG---------VAES 338 (1276)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~-~~-~~~~~~l~~-~~~gs~ilvTtr~~~---------v~~~ 338 (1276)
+...+++ .-+||+||+..-... .| +.+...+.. ...+.++|+||+... +...
T Consensus 84 ---------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 84 ---------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1111222 348999999553221 22 233332221 123447888887532 1223
Q ss_pred cCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 037340 339 MGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGL 399 (1276)
Q Consensus 339 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 399 (1276)
+.....+++.++++++...++.+.+..... +--++..+.|++.+.|.|..+.-+...
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 323457899999999989988765432211 122456677888899999877655433
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1.2e-07 Score=96.22 Aligned_cols=128 Identities=23% Similarity=0.195 Sum_probs=90.4
Q ss_pred ccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccc
Q 037340 565 ICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLY 644 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~ 644 (1276)
+...+.|.++.+.++.. ..+-++..-.+.+|+|++++|.|..+-. +..|.+|+.||||+|.++++-..-.+|-
T Consensus 280 ~dTWq~LtelDLS~N~I------~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI------TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred cchHhhhhhccccccch------hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhc
Confidence 34455566666666531 1122235667788888888888877643 7778888888888888887766667788
Q ss_pred cccEEecCCccchhhhccccCCccccceeecccccccccCc--cccCCccccccCCceEe
Q 037340 645 NLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMP--KGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 645 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~ 702 (1276)
|.++|.|++| .+..+ +++++|-+|..|++.+|+ +..+- .+||+|+.|++|.+..+
T Consensus 353 NIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 353 NIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred CEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 8888888887 66666 567888888888888887 66553 35888888888766544
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=5.4e-07 Score=72.72 Aligned_cols=57 Identities=28% Similarity=0.502 Sum_probs=45.2
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCcccccc-hhhhccccccEEecCCc
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDC 654 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~ 654 (1276)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 46788888888888886 56788888888888888888775 45788888888888877
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=1.9e-05 Score=93.96 Aligned_cols=247 Identities=19% Similarity=0.144 Sum_probs=136.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.++.++.+.+|+..... +...+.+.|+|++|+||||+|+.+++.. . |+ .+-++.+...+. .....++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el--~--~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDY--G--WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHc--C--CC-EEEEcccccccH-HHHHHHH
Confidence 4689999999999999965431 2236789999999999999999999842 1 22 222334432222 2223333
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH----hhHhhhccCCCCCCCCcEEEEEecch-hhhh-hc
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY----ENWSILSRPFGVGAPGSKIVVTTRNL-GVAE-SM 339 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~----~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~-~~ 339 (1276)
........ ....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211110 0113677999999965321 234444444432 234466666442 2211 11
Q ss_pred -CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCC-C--ChhHHHHHHhh
Q 037340 340 -GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGR-D--DPRDWEFVLNT 415 (1276)
Q Consensus 340 -~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~-~--~~~~w~~~l~~ 415 (1276)
.....+.+.+++.++....+.+.+...+. .. -.++...|++.++|..-.+......+... . +.+.-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-EC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 22357889999999998888876643332 11 24677889999999776554433333322 1 1222222221
Q ss_pred hcccccccccchhHHHHHhHh-cCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCcc
Q 037340 416 DIWNLREESCNILPALRVSYH-FLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQ 475 (1276)
Q Consensus 416 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 475 (1276)
.....+++.++..-+. .-+......+..+ .++. ..+-.|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1122456666665554 2233333322221 1222 34778999999754
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.8e-05 Score=93.69 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=114.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||.+..++.|..++... .-...+.++|..|+||||+|+.+.+.......+. +.....-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 46899999999999998543 2245667999999999999998886321111000 00011111111111
Q ss_pred HH-----hhcccCCCCCcHHHHHHHHHHHh----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hh
Q 037340 266 RS-----IADDQIKDDDDLNSLQVKLKKQL----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GV 335 (1276)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v 335 (1276)
.. +..... .....++..+.+.... .++.-++|+|++...+...+..+...+.......++|+||.+. .+
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 10 000000 1122233333222211 2455589999997766667888877766555677888877763 33
Q ss_pred hhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHH
Q 037340 336 AESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGG 398 (1276)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 398 (1276)
...+ .-...+.++.++.++..+.+.+.....+. .-..+..+.|++.++|.. -|+.++-.
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2222 12357999999999999998876543221 112466788999998865 46655443
No 59
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.32 E-value=1.1e-06 Score=90.83 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=32.4
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.||||+++++++...+... .....+.+.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999522 3456689999999999999999999884
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=3.1e-06 Score=83.98 Aligned_cols=125 Identities=18% Similarity=0.097 Sum_probs=72.8
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 189 YGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
+|++..++.+...+.. ...+.+.|+|.+|+|||++|+++++. ....-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 4788899999888843 23568999999999999999999984 22222345666655443322221111100
Q ss_pred hcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc---CHhhHhhhccCCCCC---CCCcEEEEEecchh
Q 037340 269 ADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE---NYENWSILSRPFGVG---APGSKIVVTTRNLG 334 (1276)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---~~~~~~~~~~~l~~~---~~gs~ilvTtr~~~ 334 (1276)
............++.++|+||++.. ....+......+... ..+.+||+||....
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223456789999999753 122233333333221 35778888888643
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.32 E-value=5.4e-06 Score=83.39 Aligned_cols=182 Identities=21% Similarity=0.250 Sum_probs=96.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+|||-+.-++.+.-++..... .++....+.+||++|+||||||.-+++ +....|. +.+.. ......-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C--SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhhhHHHHHHHH
Confidence 5799999988887666543211 234577889999999999999999998 4444442 22211 111111111122
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC--------CCC-----------cEE
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG--------APG-----------SKI 326 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~--------~~g-----------s~i 326 (1276)
..+ +++-+|.+|++..-+..+-+.+..++.++ +++ +-|
T Consensus 97 ~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 97 TNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred Hhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 211 23446666777654433333332222111 111 233
Q ss_pred EEEecchhhhhhcCCCC--ceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 037340 327 VVTTRNLGVAESMGVDP--AYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLR 401 (1276)
Q Consensus 327 lvTtr~~~v~~~~~~~~--~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 401 (1276)
=.|||...+...+.... ..+++..+.+|-.++..+.+..-. .+-..+.+.+|++++.|-|--..-+-..++
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 46888765555444332 347999999999999988775433 233467889999999999965554444443
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.1e-05 Score=91.93 Aligned_cols=191 Identities=16% Similarity=0.176 Sum_probs=108.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++.......+. ..+...-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46899999999999988543 2245678999999999999999987321100000 00000000111111
Q ss_pred HHhhc----ccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhh
Q 037340 266 RSIAD----DQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVA 336 (1276)
Q Consensus 266 ~~l~~----~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~ 336 (1276)
..... -........++..+.+... ..+++-++|+|++.......+..+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000 0000001122222111111 12455699999997666556777777666555566777766543 333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLA 392 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1276)
..+ +-...+++.+++.++..+.+.+.+...+. .--++.+..|++.++|.|-.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 222 12357899999999998888775543221 11245677899999998853
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.30 E-value=8.5e-06 Score=93.38 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=107.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|++..++.+..++.. +..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+. ....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~--~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQ--GKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhc--chhhh
Confidence 4688999999999998843 2345688999999999999999987321 11111 2234443321100 00000
Q ss_pred ------HHHhhcccCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 265 ------LRSIADDQIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 265 ------~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
...+...........+.....++... .+.+-+||+||+..-.......+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 00000000000111222222222221 1345589999995544344444554443334456788777542
Q ss_pred -hhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 334 -GVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 334 -~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
.+...+. ....+.+.+++.++...++.+.+...+. . --.+.++.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 2222221 2356888999999998888876543322 1 124677888899988765543
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.28 E-value=8.4e-06 Score=85.53 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=100.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
+..+.+.+||++|+||||||+.+........ ..||..|.......-.+.|.++.... ..+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~----------------~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE----------------KSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH----------------Hhh
Confidence 5678889999999999999999998433222 45777776655445555555543321 234
Q ss_pred cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEE--Eecchhhhh---hcCCCCceecCCCChhhHHHhhhhcccC
Q 037340 291 SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVV--TTRNLGVAE---SMGVDPAYQLKELSNDDCLCVLTQISLG 365 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv--Ttr~~~v~~---~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 365 (1276)
..+|.+|.+|.|..-+..+-+.+. |.-..|..++| ||.++...- -+.--.++.+++|..++-..++.+....
T Consensus 220 ~krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 578899999999765444444444 44446776665 777764321 1223468999999999999988874321
Q ss_pred CC------CCCCCc---chHHHHHHHHHHcCCChH
Q 037340 366 AR------DFNMHQ---SLKEVGEKIAMKCRGLPL 391 (1276)
Q Consensus 366 ~~------~~~~~~---~~~~~~~~i~~~~~g~PL 391 (1276)
-. +.-+.+ -...+.+-++..|+|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 111111 123456667777888754
No 65
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=9.9e-06 Score=94.84 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=111.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..... .|+.. ...+.-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~------~~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCE------TGVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCC------cCCCC-CCCccCHHHHHHh
Confidence 468999999999999996432 24577899999999999999998631110 01100 0001001111111
Q ss_pred HHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~ 336 (1276)
..-... ........++..+.+... ..+++-++|+|++..-+......+...+.....+.++|++|.+. .+.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 000000 000111223332222211 23566799999997766666777776665544566777777653 222
Q ss_pred hh-cCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 337 ES-MGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 337 ~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
.. ......+++.+++.++..+.+.+.+...+. .--.+....|++.++|.+-.+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 11 123367999999999999888876543321 122456778999999977433
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=2.4e-06 Score=94.67 Aligned_cols=154 Identities=25% Similarity=0.409 Sum_probs=102.1
Q ss_pred EEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCC
Q 037340 1080 IRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKIS 1159 (1276)
Q Consensus 1080 l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~ 1159 (1276)
|.+.+| .++.+|. -.++|++|.+++|..+..+|+.+ .++|++|++++|..+..+ +++|+.|+++++...
T Consensus 57 L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~ 125 (426)
T PRK15386 57 LYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATD 125 (426)
T ss_pred EEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCc
Confidence 344466 6777772 12479999999998888888766 368999999999767654 457888888766543
Q ss_pred ccccccccCCC-CCcceEEecCCCCCC-ccCC-CCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCC-cccCC
Q 037340 1160 KPLFQWGLNRF-NSLRKLKISGGFPDL-VSSP-RFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKL-KYFSK 1235 (1276)
Q Consensus 1160 ~~~~~~~l~~l-~~L~~L~Ls~~~~~~-~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~ 1235 (1276)
. +..+ ++|+.|.+.++.+.. ...+ ..|++|++|++++|..+. +|..+. .+|+.|+++.+... ..++.
T Consensus 126 ~------L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~ 196 (426)
T PRK15386 126 S------IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISF 196 (426)
T ss_pred c------cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCcc
Confidence 2 2233 367888875432221 1122 256899999999987553 443322 58899998876322 24566
Q ss_pred CCCccccccccccCChhHH
Q 037340 1236 QGLPKSLLRLIIDECPLIE 1254 (1276)
Q Consensus 1236 ~~l~~~L~~L~i~~cp~l~ 1254 (1276)
..+|+++ .|.+.+|.++.
T Consensus 197 ~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 197 EGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ccccccc-EechhhhcccC
Confidence 6788888 88888886543
No 67
>PLN03025 replication factor C subunit; Provisional
Probab=98.26 E-value=1e-05 Score=90.80 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=103.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccccc-EEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|.++.++.+..++.. +..+.+.++|++|+||||+|+.+++.. ....|.. ++=++.+...+.. ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 4688999888888888743 334557899999999999999998731 1122221 1111222221211 12222
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhcC-CC
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESMG-VD 342 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~~-~~ 342 (1276)
+..+..... . .-.++.-++|+|++..........+...+......+++++++... .+...+. -.
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 221111000 0 002345699999997655555555554444434556777766542 2211111 12
Q ss_pred CceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHH
Q 037340 343 PAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLA 392 (1276)
Q Consensus 343 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1276)
..+++++++.++....+.+.+...+. .. -++....|++.++|..-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi-~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV-PY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHH
Confidence 57899999999998888877644332 11 145678899999987643
No 68
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.9e-05 Score=87.20 Aligned_cols=207 Identities=15% Similarity=0.159 Sum_probs=129.6
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-c-EEEEEEcCCCCHHHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-I-KAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~-~~wv~~~~~~~~~~~~~~i 264 (1276)
.+.+|+++++++...|...-. ++.+.-+.|+|..|+|||+.++.|.. ++..... . ++.|++-...+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 388999999999998865432 23334489999999999999999998 4444432 2 6899999999999999999
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccCHhhHhhhccCCCCCCC-CcEEE--EEecchhhhh--
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNENYENWSILSRPFGVGAP-GSKIV--VTTRNLGVAE-- 337 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~-gs~il--vTtr~~~v~~-- 337 (1276)
+++++.... ......+....+.+.+. ++.+++|||++..-....-+.+...+..... +++|+ ..+-+.....
T Consensus 94 ~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999984433 55666677777777774 5789999999944211110122222221111 34443 3333333222
Q ss_pred ------hcCCCCceecCCCChhhHHHhhhhcccCCC-CCCCCcchHHHHHHHHHHcCC-ChHHHHHHHHH
Q 037340 338 ------SMGVDPAYQLKELSNDDCLCVLTQISLGAR-DFNMHQSLKEVGEKIAMKCRG-LPLAAKTLGGL 399 (1276)
Q Consensus 338 ------~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~ 399 (1276)
.++. ..+...+-+.+|-..++...+-..- .....++..+.+..++..-+| --.||.++-.+
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 2222 2377888889999888887664322 123334444444444444454 44555554433
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.25 E-value=1.3e-06 Score=92.34 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=62.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC--CCHHHHHHHHHHHhhcccCCCCC-----cHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED--FDVSRVTKSILRSIADDQIKDDD-----DLNSLQV 284 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~ 284 (1276)
....++|+|++|+|||||+++++++.... +|+..+|+.+... .++.++++.+...+-........ -......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999965444 8999999997766 78999999984443332221111 1112222
Q ss_pred HHHHH-hcCCcceEeecCCC
Q 037340 285 KLKKQ-LSGKKILLVLDDVW 303 (1276)
Q Consensus 285 ~l~~~-l~~kr~LlvlDdv~ 303 (1276)
..... -+++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.7e-06 Score=99.89 Aligned_cols=204 Identities=18% Similarity=0.173 Sum_probs=115.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|-+..++.+..++.... -...+.++|++|+||||+|+.+++.......+....|.+.+... .......-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 368999999999999885432 23566999999999999999998742211222222232221000 000000000
Q ss_pred HHhhcccCCCCCcHHHHHHHHHH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhcC-CC
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESMG-VD 342 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~~-~~ 342 (1276)
..+........+++.++.+.+.. -..+++-++|+|+++......+..+...+........+|++|.. ..+...+. ..
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000000011111222221211 11356679999999776666788887777655455566655543 33332222 23
Q ss_pred CceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 037340 343 PAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGGL 399 (1276)
Q Consensus 343 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 399 (1276)
..+++.+++.++..+.+.+.+...+. ..-++.+..|++.++|.+- |+..+-.+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999999887654332 1124677889999999885 44444343
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.3e-05 Score=97.05 Aligned_cols=195 Identities=17% Similarity=0.170 Sum_probs=112.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....... ....-.....+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 468999999999999985432 23445899999999999999999732111000000 000000000000
Q ss_pred HH-------hhcccCCCCCcHHHHHHHHHH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RS-------IADDQIKDDDDLNSLQVKLKK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
.. +........+++.++.+.+.. ...+++-++|+|++..........++..+.......++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 000000011112222222221 12467779999999777777788887777655456666665554 3333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
..+ .-...|++.+++.++..+.+.+.+...+ ...-.+.+..|++.++|.|- |+.++
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 1236799999999999998887653321 12224677889999999885 44444
No 72
>PF13173 AAA_14: AAA domain
Probab=98.24 E-value=1.6e-06 Score=82.72 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=76.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+++.|.|+.|+||||++++++++.. ....+++++..+....... ..+ ..+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhcc
Confidence 36899999999999999999997422 2345566666544221100 000 22333333444
Q ss_pred CcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhc------CCCCceecCCCChhhH
Q 037340 293 KKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESM------GVDPAYQLKELSNDDC 355 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~------~~~~~~~l~~L~~~~~ 355 (1276)
++.+|++|++.. ..+|......+....+..+|++|+........- +....+++.||+-.|.
T Consensus 61 ~~~~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999944 566777766665554668999999986554321 1223578888887663
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=6.6e-07 Score=104.94 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=101.1
Q ss_pred ccCCCCcceeeccccccCCcchhhHHHHhcCCCC-ceEEEEecCccccccCcccccccccceeeccCCcccccchhhhcc
Q 037340 565 ICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLP-RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSL 643 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L 643 (1276)
+...+.+..|.+..+.. .++.+....++ +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+
T Consensus 112 ~~~~~~l~~L~l~~n~i------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 112 LLELTNLTSLDLDNNNI------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hhcccceeEEecCCccc------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 34446677777766531 22222344553 899999999999999989999999999999999999999988899
Q ss_pred ccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCC
Q 037340 644 YNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
.+|+.|++++| .+..+|..+..+..|++|.+++|. +...+..+.+++++..|.
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 99999999999 899999888888889999999986 556666677776666663
No 74
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.22 E-value=1e-05 Score=98.05 Aligned_cols=203 Identities=20% Similarity=0.198 Sum_probs=117.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEcCC---CCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVSED---FDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~---~~~~~ 259 (1276)
++++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3688999999988887732 234679999999999999999998753322222 12345554321 12222
Q ss_pred HHHHH---------------HHHhhcccC---------------CCCCc-HHHHHHHHHHHhcCCcceEeecCCCccCHh
Q 037340 260 VTKSI---------------LRSIADDQI---------------KDDDD-LNSLQVKLKKQLSGKKILLVLDDVWNENYE 308 (1276)
Q Consensus 260 ~~~~i---------------~~~l~~~~~---------------~~~~~-~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~ 308 (1276)
+...+ +...+.... ++... ....+..+.+.++.+++.++-|+.|.++..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111110000 01111 123577888899999999998888777667
Q ss_pred hHhhhccCCCCCCCCcEEEE--Eecchhh-hhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHH
Q 037340 309 NWSILSRPFGVGAPGSKIVV--TTRNLGV-AESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAM 384 (1276)
Q Consensus 309 ~~~~~~~~l~~~~~gs~ilv--Ttr~~~v-~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 384 (1276)
.|+.+...+....+...|++ ||++... ...+. -...+.+.+++.+|.++++.+.+..... .. -+++.+.|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHH
Confidence 78888776666555555555 5665432 11111 1236788899999999999886643211 11 1234444554
Q ss_pred HcCCChHHHHHHHH
Q 037340 385 KCRGLPLAAKTLGG 398 (1276)
Q Consensus 385 ~~~g~PLai~~~~~ 398 (1276)
.+..-+-|+..++.
T Consensus 384 ys~~gRraln~L~~ 397 (615)
T TIGR02903 384 YTIEGRKAVNILAD 397 (615)
T ss_pred CCCcHHHHHHHHHH
Confidence 44433455554443
No 75
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.21 E-value=2.2e-07 Score=94.30 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=89.9
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
....+.|..|||++|.|+.+-+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+..+-..-.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 445677999999999999999999999999999999999998854 899999999999999 677765555688999999
Q ss_pred ecccccccccCccccCCccccccCCceEec
Q 037340 674 INFNVLSLKEMPKGFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~ 703 (1276)
.+.+|. +..+ .++++|-+|..|+...+.
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccc
Confidence 999998 7776 578888888888765544
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.2e-05 Score=91.77 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=112.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||-+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... +...-+ .+.....-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGI-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccC-CCCCCcccHHHHHHH
Confidence 468999999999999996432 2456789999999999999999863211000 000000 000000001111111
Q ss_pred HH-----hhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhh
Q 037340 266 RS-----IADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGV 335 (1276)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v 335 (1276)
.. +..... .....+++.+.+... ..++.-++|+|++...+...+..++..+.....+.++|++|.+ ..+
T Consensus 89 aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 000000 112233333333222 1456669999999777777788887777655456666555544 444
Q ss_pred hhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 336 AESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 336 ~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
...+. -...+.+..++.++..+.+.+.+...+. ....+..+.|++.++|.|....
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33221 2367999999999999888876533221 1123556789999999986443
No 77
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.16 E-value=9.6e-06 Score=99.05 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=98.0
Q ss_pred CeeecchhhHH---HHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKE---AIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
.+|+|.+..+. .+..++.. .....+.++|++|+||||+|+.+++ .....| +.++......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f-----~~lna~~~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHF-----SSLNAVLAGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcc-----eeehhhhhhh----
Confidence 46889888774 45556532 3456778999999999999999997 333334 1111100000
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHh--cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEE--ecchh--hh
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQL--SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVT--TRNLG--VA 336 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvT--tr~~~--v~ 336 (1276)
.+.........+.+ .+++.++|+||++.-....++.+...+. .|..++|+ |.++. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111111121112 2467799999997655566666665443 35555553 34321 21
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCC---CCCCcchHHHHHHHHHHcCCChH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARD---FNMHQSLKEVGEKIAMKCRGLPL 391 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~PL 391 (1276)
..+ .-...+.+++++.++...++.+.+..... .....--++....|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 12357999999999999999876531000 00111224566778888888643
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.5e-05 Score=90.97 Aligned_cols=199 Identities=16% Similarity=0.074 Sum_probs=112.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++...-. .... ...+....+-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 468999999999999985432 23457899999999999999998732111 0000 001111111111111100
Q ss_pred HHh---hcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchhhhhhcC
Q 037340 266 RSI---ADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLGVAESMG 340 (1276)
Q Consensus 266 ~~l---~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~~~~~ 340 (1276)
..+ ........+++.++.+.+... ..++.-++|+|++..-....+..+...+........+|.+| ....+...+.
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 000000112222333333221 24566699999997777778888877775443455545444 4344433322
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
-.+.|.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+- |+.++
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHHHHHHHH
Confidence 2357999999999998888876543221 1224667889999999884 43333
No 79
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.16 E-value=2.8e-05 Score=88.43 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=104.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE--cCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV--SEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~ 263 (1276)
.+++|+++.++.+..++... ..+.+.|+|..|+||||+|+.+++.. ....+. ..++.+ +...... ...+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998542 34567999999999999999998731 111121 122222 1211111 1111
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhc-CC
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESM-GV 341 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~ 341 (1276)
.+.++....+ .....+-++++|++..-.......+...+......+++|+++... .+.... ..
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001235589999985544444555555554444556777776432 221111 12
Q ss_pred CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 342 DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 342 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
...+++.+++.++....+.+.+...+. .--++.+..+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 246889999999998888876643322 112457788899999987643
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=2.7e-05 Score=82.77 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=89.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
...+.|+|..|+|||+||+.+++. .......+.++++.+ ....+. +.+. .+ .
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~ 92 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-E 92 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-h
Confidence 356999999999999999999873 333334556665432 111111 1111 11 1
Q ss_pred CcceEeecCCCccC-HhhHhh-hccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHhhh
Q 037340 293 KKILLVLDDVWNEN-YENWSI-LSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCVLT 360 (1276)
Q Consensus 293 kr~LlvlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~~ 360 (1276)
+.-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++..++.....+++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 23599999994321 122322 2222211 12466799999852 233344455689999999999999999
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 361 QISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
+.+...+- .--+++...|++.++|..-++
T Consensus 173 ~~a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 86643221 122466777888888766544
No 81
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=1.9e-06 Score=105.45 Aligned_cols=93 Identities=27% Similarity=0.354 Sum_probs=80.4
Q ss_pred ceEEEEecCcccc-ccCcccccccccceeeccCCccc-ccchhhhccccccEEecCCccchhhhccccCCccccceeecc
Q 037340 599 RLRVFSLRGYCIS-KLPNEIGNLKHLRFLNLSGTSIQ-FLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINF 676 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 676 (1276)
.++.|+|++|.+. .+|..|++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999887 67889999999999999999987 789899999999999999996667889999999999999999
Q ss_pred cccccccCccccCCc
Q 037340 677 NVLSLKEMPKGFGKL 691 (1276)
Q Consensus 677 ~~~~l~~lp~~i~~L 691 (1276)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 988555788777653
No 82
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.1e-05 Score=91.04 Aligned_cols=187 Identities=19% Similarity=0.173 Sum_probs=112.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh-------------------cccccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~ 246 (1276)
.+++|-+..++.+..++... .....+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 46899999999999988543 223557899999999999999998621100 011122
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcE
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSK 325 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ 325 (1276)
+++.......+ ++..++.+.+... ..+++-++|+||+.......+..+...+......+.
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 1112222222211 235677999999976666677778777765545666
Q ss_pred EEEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 037340 326 IVVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGGLL 400 (1276)
Q Consensus 326 ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 400 (1276)
+|++|.+ ..+...+ .-...+++.+++.++..+.+.+.+...+. ..-++....|++.++|.+ -|+..+-.++
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6654443 3333222 22367999999999988777765433221 122456678999999966 4555554433
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3e-05 Score=90.65 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=113.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccccc-EEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|-+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.......... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 46889999999988877543 22457889999999999999999873211100000 000000000 001111
Q ss_pred HHHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEE-Eecchhh
Q 037340 265 LRSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVV-TTRNLGV 335 (1276)
Q Consensus 265 ~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~v 335 (1276)
....... ........+++.+.+... ..+++-++|+|+++.-....+..+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 0000000 000112233333322221 235677999999987767778888777765555666654 4444455
Q ss_pred hhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 336 AESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 336 ~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
...+. ....+++.+++.++....+.+.+...+. .-..+....|++.++|.+- |+..+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~al~~L 230 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDAVSIL 230 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44332 2357899999999999999887754332 1124566779999999774 33333
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.4e-07 Score=95.84 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=38.0
Q ss_pred CCccEEEEeccCCCCCCccCC--CCCCCceeEEEEccCCCCCC--CCCCCCCCCcceeeecCCCCc
Q 037340 782 QALQELTILGYGGTKFPVWLG--DPSFSKLVLLRVLSCGMCTS--LPPVGQLLFLKHLEISGMDGV 843 (1276)
Q Consensus 782 ~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~~~--l~~l~~l~~L~~L~L~~~~~~ 843 (1276)
++|..|+++||...-.-+.+. ...+++|..|+|++|..... ...+.+++.|++|.++.|+.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 467777777765332211111 01567888888888876543 222667888888888888654
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=5.9e-05 Score=77.68 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDF 369 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 369 (1276)
+.+-++|+||+.......++.+...+....+.+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 456689999996655566777777776655667777777653 222222 12357999999999998888876 1 1
Q ss_pred CCCcchHHHHHHHHHHcCCChH
Q 037340 370 NMHQSLKEVGEKIAMKCRGLPL 391 (1276)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~g~PL 391 (1276)
-++.+..|++.++|.|.
T Consensus 170 -----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPG 186 (188)
T ss_pred -----CHHHHHHHHHHcCCCcc
Confidence 13678899999999885
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.3e-05 Score=89.08 Aligned_cols=183 Identities=18% Similarity=0.225 Sum_probs=107.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-------------------cccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-------------------FQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~ 246 (1276)
.++||.+...+.+...+... .-...+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899998888888887543 12346789999999999999999873211000 0011
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-----hcCCcceEeecCCCccCHhhHhhhccCCCCCC
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ-----LSGKKILLVLDDVWNENYENWSILSRPFGVGA 321 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~ 321 (1276)
..+..+.. ...+.+. .+.+. ..+++-++|+|++..-.....+.+...+....
T Consensus 89 ~el~aa~~----------------------~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~ 145 (472)
T PRK14962 89 IELDAASN----------------------RGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145 (472)
T ss_pred EEEeCccc----------------------CCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC
Confidence 11221111 1122221 11111 23456799999996544455566666665433
Q ss_pred CCcEEEEEecc-hhhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 037340 322 PGSKIVVTTRN-LGVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG-LPLAAKTLGG 398 (1276)
Q Consensus 322 ~gs~ilvTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 398 (1276)
....+|++|.+ ..+...+. ....+.+.+++.++....+.+.+...+. .--++....|++.++| .+.|+..+..
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444444433 33433322 2357899999999998888877643221 1124567778887765 4677777765
Q ss_pred Hh
Q 037340 399 LL 400 (1276)
Q Consensus 399 ~l 400 (1276)
+.
T Consensus 222 l~ 223 (472)
T PRK14962 222 VW 223 (472)
T ss_pred HH
Confidence 43
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.2e-05 Score=91.72 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=108.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+........ -+..+... ...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCccc----HHHHHHh
Confidence 478999999999999986432 24567899999999999999987631111000 00000000 0000000
Q ss_pred HH-----hhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hh
Q 037340 266 RS-----IADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GV 335 (1276)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v 335 (1276)
.. +..... .....+.+.+.+... ..+++-++|+|++..........+...+.......++|++|.+. .+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 112222332222211 23566799999996655555666666665433456777766543 22
Q ss_pred hhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 336 AESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
...+ +-...+.+.+++.++....+.+.+...+. .--.+....|++.++|.+- |+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 2211 12246888899999998888876643321 1124567889999999885 44444
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=6.5e-05 Score=85.38 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=107.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCC----CCCCccEEEEEecCCChHHHHHHHHhcchhhhc------------------cc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR----ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR------------------HF 243 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~f 243 (1276)
.+++|-+..++.+..++...... +..-.+-+.++|+.|+|||++|+.++....-.. .+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 36889999999999999654210 001245688999999999999999876210000 00
Q ss_pred ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCC
Q 037340 244 QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGV 319 (1276)
Q Consensus 244 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~ 319 (1276)
....++.... .....+++.+.+... ..+++-++|+|++..........+...+..
T Consensus 85 pD~~~i~~~~---------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 85 PDVRVVAPEG---------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCEEEecccc---------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 1111111110 111222222211111 134556888899977666666667666655
Q ss_pred CCCCcEEEEEecch-hhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 320 GAPGSKIVVTTRNL-GVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 320 ~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
...+..+|++|.+. .+...+ .-...+.+.+++.++..+.+.+... . ..+.+..+++.++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 55566677666653 333222 2236799999999999988874321 1 1355778999999999755433
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=9.3e-05 Score=83.45 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=112.6
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEE---EEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAW---TCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~ 261 (1276)
-.+++|.++.++.+.+.+..+. -...+.++|+.|+||+|+|..+++..--......... .........-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3578999999999999985432 2446889999999999999888763110010000000 0000000000111
Q ss_pred HHHHHHh-------hcc--cC----CCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCC
Q 037340 262 KSILRSI-------ADD--QI----KDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPG 323 (1276)
Q Consensus 262 ~~i~~~l-------~~~--~~----~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~g 323 (1276)
+.+...- ... .. .....+++..+ +.+.+ .+.+-++|+||+...+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000 000 00 01123344332 33333 256679999999777777777777766654456
Q ss_pred cEEEEEecchh-hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 324 SKIVVTTRNLG-VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 324 s~ilvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
+.+|++|.+.+ +...+ .-.+.+.+.+++.++..+++.+.... .. .+....+++.++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 67777776643 32222 23467999999999999999875321 11 122267899999999866544
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=3.4e-06 Score=68.04 Aligned_cols=58 Identities=29% Similarity=0.278 Sum_probs=51.1
Q ss_pred cccceeeccCCcccccch-hhhccccccEEecCCccchhhhc-cccCCccccceeeccccc
Q 037340 621 KHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 621 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 679 (1276)
++|++|++++|+|+.+|. .|.++++|++|++++| .+..+| ..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 6899999999999998 566666 468999999999999986
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.05 E-value=7.9e-05 Score=86.00 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=108.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh--c------------------cccc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ--R------------------HFQI 245 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~------------------~f~~ 245 (1276)
.+++|.+..++.+..++... .-.+.+.++|++|+||||+|+.+.....-. . +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 36799999999999998543 224567899999999999999887631100 0 111
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcE
Q 037340 246 KAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSK 325 (1276)
Q Consensus 246 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ 325 (1276)
.+++........ ...+++.+.+... -..+++-++|+|++..-.......+...+......+.
T Consensus 88 ~~~~~~~~~~~~-~~~~~l~~~~~~~-----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNNGV-DDIREILDNVKYA-----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccCCH-HHHHHHHHHHhcC-----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 122211111111 1111222211110 0124556889999855444556666666654445667
Q ss_pred EEEEecchh-hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 326 IVVTTRNLG-VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 326 ilvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
+|++|.+.. +...+ .....+++.+++.++..+.+...+...+. . --++.+..+++.++|.|-.+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-K---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 677765543 22222 22356888999999988888876543221 1 114677889999999986554443
No 92
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=9.6e-06 Score=88.93 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=61.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC--CHHHHHHHHHHHhhcccCCCCCcHHH------HH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF--DVSRVTKSILRSIADDQIKDDDDLNS------LQ 283 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~~ 283 (1276)
...-..|+|++|+||||||+++|++.... +|+..+||.+.+.. .+.++++.+...+-.... +.....+ ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHH
Confidence 34567899999999999999999965444 89999999998887 777788877643332222 1111111 11
Q ss_pred HHHHHH-hcCCcceEeecCCCc
Q 037340 284 VKLKKQ-LSGKKILLVLDDVWN 304 (1276)
Q Consensus 284 ~~l~~~-l~~kr~LlvlDdv~~ 304 (1276)
+.-+.. ..+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 368999999999943
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=5.6e-05 Score=80.45 Aligned_cols=155 Identities=13% Similarity=0.134 Sum_probs=92.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+.+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...+.. +.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~----~~~~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVL----EGMEQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHH----HHhhh
Confidence 468899999999999999999873 333333455665542110 000111 11111
Q ss_pred CcceEeecCCCccC-HhhHhhhc-cCCCC-CCCC-cEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHhh
Q 037340 293 KKILLVLDDVWNEN-YENWSILS-RPFGV-GAPG-SKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 293 kr~LlvlDdv~~~~-~~~~~~~~-~~l~~-~~~g-s~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
--++++||+.... ...|+... ..+.. ...| .++|+||+.. ++..++....++++++++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 2488999994421 12343221 22211 1123 3799999753 34445566788999999999999998
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 037340 360 TQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGL 399 (1276)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 399 (1276)
.+++...+ . .--+++..-|++++.|..-++..+-..
T Consensus 177 ~~~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 177 QLRARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87664322 1 122577788899998876655544433
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.5e-05 Score=86.51 Aligned_cols=180 Identities=17% Similarity=0.159 Sum_probs=109.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchh------------------hh-cccccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDR------------------VQ-RHFQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~------------------~~-~~f~~~ 246 (1276)
.++||-+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.-. +. ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999999998888885432 234788999999999999998875210 00 011122
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEE
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKI 326 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~i 326 (1276)
+.++.+....+++ .+++++..... -..+++-++|+|++..-.......+...+....+.+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 2333222222211 11222111100 01345668999999666666677777777655566777
Q ss_pred EEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHH
Q 037340 327 VVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLA 392 (1276)
Q Consensus 327 lvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 392 (1276)
|++|.. ..+...+ .-...+++.+++.++..+.+.+.+...+. .--++.+..|++.++|.+-.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 666543 4444332 23467899999999998888877654332 12245677899999987753
No 95
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=5.1e-06 Score=101.77 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=87.9
Q ss_pred cceeeccccccCCcchhhHHHHhcCCCCceEEEEecCcccc-ccCcccccccccceeeccCCccc-ccchhhhccccccE
Q 037340 571 LRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCIS-KLPNEIGNLKHLRFLNLSGTSIQ-FLPDSINSLYNLYT 648 (1276)
Q Consensus 571 Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~ 648 (1276)
++.|.+.++. +....+..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|++|++
T Consensus 420 v~~L~L~~n~-----L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQG-----LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCC-----ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 5556665543 22334556899999999999999997 78999999999999999999998 78999999999999
Q ss_pred EecCCccchhhhccccCCc-cccceeecccccccc
Q 037340 649 ILLEDCYWLKKLCQDMGNL-TKLHHLINFNVLSLK 682 (1276)
Q Consensus 649 L~l~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~l~ 682 (1276)
|+|++|.....+|..+..+ .++..+++.+|..+-
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999997777899888764 567788888876433
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=7.3e-05 Score=89.23 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=110.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.++||-+..++.|..++.... -...+.++|+.|+||||+|+.+++..--.... ....+ ...+.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468999999999999985432 24567899999999999999986521100000 00000 01111111111
Q ss_pred HHHHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hh
Q 037340 264 ILRSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LG 334 (1276)
Q Consensus 264 i~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~ 334 (1276)
|...-..+ ........++..+.+... ..++.-++|+|++.......+..+...+.......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 10000000 000112233333322221 1244558999999877777788887777655455666655543 33
Q ss_pred hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 335 VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 335 v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
+...+ .-...+++++++.++..+.+.+.+...+. ....+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33222 23467999999999998888876543321 1124567888999999775443
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=6.4e-05 Score=88.36 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=109.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|++..++.+..++.... ..+.+.++|+.|+||||+|+.+++. .. +.-|.... ..+.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCCC-CCcccHHHHHHH
Confidence 468999999999999885432 2456889999999999999999863 11 11121110 111111111111
Q ss_pred HHhhcc----cCCCCCcHHHHHHHH---HHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKL---KKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l---~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~ 336 (1276)
...... ........+++.+.+ ... ..+++-++|+|++.......+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110000 000111222222211 111 12344479999996655566777777665444455555555 333333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGG 398 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 398 (1276)
..+ .....+++.+++.++....+.+.+...+. .--.+.+..+++.++|.+ .|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 222 22457899999999998888876543221 111456778999999966 45555544
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00012 Score=82.03 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=115.3
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~ 259 (1276)
.-..++|-++..+.+...+..+ .....+.|+|+.|+||||+|..+++. +-.. +.... .........
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~---~~~~~~~c~ 90 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET---LADPDPASP 90 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc---cCCCCCCCH
Confidence 3457899999999999999543 23456889999999999999988873 2110 11110 011111112
Q ss_pred HHHHHHHH-------hhccc-C-----CCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCC
Q 037340 260 VTKSILRS-------IADDQ-I-----KDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGA 321 (1276)
Q Consensus 260 ~~~~i~~~-------l~~~~-~-----~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~ 321 (1276)
..+.+... +..+. . .....+++.. .+.+.+ .+++-++|+|++...+......+...+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 23333221 10000 0 0112234433 333333 3566799999997776666777766665444
Q ss_pred CCcEEEEEecc-hhhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 322 PGSKIVVTTRN-LGVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 322 ~gs~ilvTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
.+..+|++|.. ..+...+. -...+.+.+++.++..+++.+..... . -..+.+..|++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45555555543 33322221 23589999999999999998743211 1 113556789999999998655443
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=6.5e-05 Score=89.78 Aligned_cols=195 Identities=17% Similarity=0.151 Sum_probs=111.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||-+..++.+...+.... -...+.++|..|+||||+|+.+++...-...+ .......-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-------~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-------TATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-------CCCCCCCCHHHHHHH
Confidence 468999999999999885431 23446799999999999999998732111000 000111111111211
Q ss_pred HH-------hhcccCCCCCcHHHHHHHHHH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RS-------IADDQIKDDDDLNSLQVKLKK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
.. +........+++.++.+.+.. -..+++-++|+|++..........+...+.......++|.+|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 000000011122222222211 12466779999999777767777777766554455566555544 4443
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
..+ .-...|.+.+++.++..+.+.+.....+. ....+....|++.++|.+- |+.++
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 12367999999999999888875532221 1224566789999999876 44443
No 100
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5.6e-06 Score=60.65 Aligned_cols=39 Identities=36% Similarity=0.497 Sum_probs=24.5
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCCcccccc
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLP 637 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp 637 (1276)
+|++|++++|.|+.+|..|++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666776666666666666666666666666666553
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=8.5e-05 Score=87.72 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=107.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-------------------ccccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 246 (1276)
.++||-+..++.+..++.... -...+.++|+.|+||||+|+.+++..--.. .|..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999995432 234578999999999999999887321110 11112
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH----HhcCCcceEeecCCCccCHhhHhhhccCCCCCCC
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKK----QLSGKKILLVLDDVWNENYENWSILSRPFGVGAP 322 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~ 322 (1276)
+.+..+. ....++..+.+.. -..++.-++|+|++..........+...+.....
T Consensus 91 ~eidaas----------------------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 91 FEVDAAS----------------------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEcccc----------------------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 2222111 1222222222211 1135666899999977666677777776665545
Q ss_pred CcEEEEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 323 GSKIVVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 323 gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
.+++|++|.+ ..+...+ .-...+++++++.++....+.+.+...+. .-..+....|++.++|.+- |+..+
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 6777666544 3333222 12356889999998877766655433221 1123556778899999875 44434
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.97 E-value=7.2e-05 Score=79.79 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=87.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
..+.+.|+|..|+|||+||+.+++... ... ....+++..... .. + .. .
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~-~ 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DF-D 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hh-c
Confidence 346789999999999999999987321 111 233444433211 00 0 01 1
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCC-CCCCc-EEEEEecchhhhh--------hcCCCCceecCCCChhhHHHhhhh
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGV-GAPGS-KIVVTTRNLGVAE--------SMGVDPAYQLKELSNDDCLCVLTQ 361 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~-~~~gs-~ilvTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~l~~~ 361 (1276)
...-++|+||+...+...-..+...+.. ...+. .+|+|++...... .+.....+++.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 2334789999954322222333333321 11333 4666666433221 222346789999999887777765
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 362 ISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
.+...+ ..--++..+.+++...|.+..+..+...+
T Consensus 169 ~~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 432211 11224677788889999998887666554
No 103
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=1.4e-05 Score=91.70 Aligned_cols=180 Identities=15% Similarity=0.083 Sum_probs=99.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
..++.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+.+++ +....| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecc----h
Confidence 457899999999999887432110 112345689999999999999999998 333333 2221 1
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------CH---hhHhhhccCCCC--CC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------NY---ENWSILSRPFGV--GA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~---~~~~~~~~~l~~--~~ 321 (1276)
..+. ....+ .........+...-...+.+|++||++.- +. ..+..+...+.. ..
T Consensus 190 ~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELV----RKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHH----HHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111 11100 01111122222222346789999998542 01 112222222221 12
Q ss_pred CCcEEEEEecchhhh-----hhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 322 PGSKIVVTTRNLGVA-----ESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
.+.+||.||...+.. ....-+..+.+...+.++..++|..++.+..- ...-+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 466788888754321 11122457889999999999999887654321 11112 345667776654
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00012 Score=87.08 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=108.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-------------------ccccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~ 246 (1276)
.+++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999985432 234567999999999999999986321100 01111
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCC
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAP 322 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~ 322 (1276)
+++..+. ....+++.+.+... ..+++-++|+|++..........+...+.....
T Consensus 91 ~ei~~~~----------------------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAAS----------------------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeeccc----------------------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 1221111 11222222222111 135667999999976665666777766655445
Q ss_pred CcEEEEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 037340 323 GSKIVVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGGL 399 (1276)
Q Consensus 323 gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 399 (1276)
.+.+|++|.+ ..+...+ .-...+++++++.++..+.+.+.+...+. ...++.+..|++.++|.+- |+..+-.+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5666665544 3332111 11257899999999998888765532221 1224566789999999774 55554433
No 105
>PRK09087 hypothetical protein; Validated
Probab=97.95 E-value=8e-05 Score=78.30 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=87.6
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+.+.|+|+.|+|||+|++.++... . ..+++.. .+..+++.. +.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~~~----------------------~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAANA----------------------AAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHHHh----------------------hhc
Confidence 4678999999999999999888632 1 1133221 111111111 111
Q ss_pred CcceEeecCCCcc--CHhhHhhhccCCCCCCCCcEEEEEecc---------hhhhhhcCCCCceecCCCChhhHHHhhhh
Q 037340 293 KKILLVLDDVWNE--NYENWSILSRPFGVGAPGSKIVVTTRN---------LGVAESMGVDPAYQLKELSNDDCLCVLTQ 361 (1276)
Q Consensus 293 kr~LlvlDdv~~~--~~~~~~~~~~~l~~~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~ 361 (1276)
-+|++||+... +...+-.+...+. ..|..||+|++. ++...++.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999432 2222222222222 246779998873 34455556678899999999999999998
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 362 ISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
++....- . --+++..-|++++.|..-++..+-
T Consensus 165 ~~~~~~~-~---l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQL-Y---VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcCC-C---CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 8754221 1 224677788888888877666433
No 106
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.95 E-value=0.00017 Score=76.67 Aligned_cols=202 Identities=17% Similarity=0.151 Sum_probs=120.3
Q ss_pred eeecch---hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHH
Q 037340 187 KVYGRE---KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 187 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~ 259 (1276)
..||.. +.++++.+++... ...+.+-+.|||..|.|||++++++...+-.... --.++.|......+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 345543 3455566666443 3466778999999999999999999864321110 11567788888999999
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC-CcceEeecCCCcc------CHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG-KKILLVLDDVWNE------NYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~------~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
++..|+.+++.+.. .............+.++. +--+||+|++.+- .+.+.-.....+...-.=+-|.|-|++
T Consensus 112 ~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 112 FYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 99999999998875 445555666666566654 3448899999552 112222223333333344567777765
Q ss_pred hhhhhhcC-----CCCceecCCCChh-hHHHhhhhcc--cCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 333 LGVAESMG-----VDPAYQLKELSND-DCLCVLTQIS--LGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 333 ~~v~~~~~-----~~~~~~l~~L~~~-~~~~l~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
---+-... -..++.+..-+.+ |...|+.... ..-.. ...-..+++++.|...++|+.=-+
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHH
Confidence 32221111 1234555555443 4444543321 11121 112234789999999999987433
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=7.9e-05 Score=86.16 Aligned_cols=202 Identities=14% Similarity=0.172 Sum_probs=111.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE-EcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC-VSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 264 (1276)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-...+....|.. +..+...-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899999999999885431 234578999999999999999887321111111111110 00111111111111
Q ss_pred HHHhhcc----cCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchh
Q 037340 265 LRSIADD----QIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLG 334 (1276)
Q Consensus 265 ~~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~ 334 (1276)
....... ........+++.+. .+.+ .+++-++|+|++.......+..+...+......+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1100000 00011123333332 2222 3456689999996655567777777776555566666555 4333
Q ss_pred hhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 037340 335 VAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLG 397 (1276)
Q Consensus 335 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 397 (1276)
+...+. ....+++.++++++..+.+.+.+...+. .--.+.+..|++.++|.+- |+..+-
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~~L~ 230 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQSILD 230 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 332221 2246889999999988887765532221 1224678889999999774 444443
No 108
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.91 E-value=0.00015 Score=76.07 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=101.4
Q ss_pred eeecch-hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc--cEEEEEEcCCCCHHHHHHH
Q 037340 187 KVYGRE-KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 187 ~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 263 (1276)
.++|.. +..-.....+.... +.....+.|+|..|+|||.|.+++++ +..+... .+++++ ..++...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~ 78 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIRE 78 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHH
Confidence 345653 33334444454432 23456789999999999999999998 4443322 344543 3445555
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH-hhHhh-hccCCCC-CCCCcEEEEEecch-------
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY-ENWSI-LSRPFGV-GAPGSKIVVTTRNL------- 333 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~ilvTtr~~------- 333 (1276)
+...+... .. ..+++.++ .-=+|++||+..-.. ..|.. +...+.. ...|.+||+|++..
T Consensus 79 ~~~~~~~~------~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 79 FADALRDG------EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHTT------SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHcc------cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 55555431 11 22334444 345889999955322 22322 2221111 12466899999652
Q ss_pred --hhhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 334 --GVAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 334 --~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
++..++...-.+++++++.++..+++.+.+...+- .--+++++-|++++.+..-.+.-+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 23344456678999999999999999987754332 122467777888877666555433
No 109
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.00022 Score=78.44 Aligned_cols=214 Identities=17% Similarity=0.183 Sum_probs=125.3
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+..++||+.|++.+.+|+...- .......+.|.|-+|.|||.+...++.+..-...=..++.+++..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997653 2455678999999999999999999985322111124467776665677888999
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCC--cceEeecCCCccCHhhHhhhccCCCCC-CCCcEEEEEec--chhhhh-
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGK--KILLVLDDVWNENYENWSILSRPFGVG-APGSKIVVTTR--NLGVAE- 337 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~~~~~~~l~~~-~~gs~ilvTtr--~~~v~~- 337 (1276)
|...+.......... .+.+..+.++..+. -+|+|+|.++.-....-..+...|.+. -+++|+|+.-- .-+..+
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 988883332212222 44455555555443 589999998442211222233333222 25666654321 111111
Q ss_pred ---hc-----CCCCceecCCCChhhHHHhhhhcccCCCCC-CCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 338 ---SM-----GVDPAYQLKELSNDDCLCVLTQISLGARDF-NMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 338 ---~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
.+ .....+...+-+.++..++|.++....... ..+...+-.|++++.-.|-+--|+-+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 123567788999999999999876433221 1112333334444444444555555544443
No 110
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.91 E-value=1.1e-06 Score=92.23 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCCCCCeeEEEEeecCCCCc----ccccCCCCCccceeeeccCCCCcccCCC-------CCCCCCceeEeecCCCCccc
Q 037340 1094 EGLPSTKLTELMIWSCENLKA----LPNSMHNLTSLLHLEIGRCPSLVSFPED-------GFPTNLQSLEFEDLKISKPL 1162 (1276)
Q Consensus 1094 ~~~~~~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~n~~~~~~ 1162 (1276)
.+..|++|+.|||.+|.+... +...+..+++|+.|++++|. +.+=... ...++|+.|.+.+|.++...
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence 345578999999999966543 34556788899999999998 5432211 12578888888888887322
Q ss_pred ---cccccCCCCCcceEEecCC
Q 037340 1163 ---FQWGLNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1163 ---~~~~l~~l~~L~~L~Ls~~ 1181 (1276)
....+...|.|..|+|++|
T Consensus 287 ~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 287 ALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcchhhHHhcCCcc
Confidence 1222445677777777775
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=97.91 E-value=9.7e-05 Score=78.50 Aligned_cols=156 Identities=20% Similarity=0.221 Sum_probs=92.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+.+.|+|..|+|||.||+.+++. ....-..++|++..+ +... . ..+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~---------------~----~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR---------------G----PELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh---------------h----HHHHHhhhh
Confidence 467899999999999999999873 332223456665432 1110 0 112222222
Q ss_pred CcceEeecCCCccC-HhhHhh-hccCCCC-CCCCcEEEEEecchh---------hhhhcCCCCceecCCCChhhHHHhhh
Q 037340 293 KKILLVLDDVWNEN-YENWSI-LSRPFGV-GAPGSKIVVTTRNLG---------VAESMGVDPAYQLKELSNDDCLCVLT 360 (1276)
Q Consensus 293 kr~LlvlDdv~~~~-~~~~~~-~~~~l~~-~~~gs~ilvTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~l~~ 360 (1276)
- =++|+||+.... ...|.. +...+.. ...|..+|+|++... +..++....++++++++.++-.+++.
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 2 278899995321 123433 3333321 224667888887522 22233445678999999999999998
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 361 QISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
+++...+ ... -+++..-|++++.|..-++..+-..|
T Consensus 177 ~ka~~~~-~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6654322 111 14778889999988866555444433
No 112
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.89 E-value=1.9e-05 Score=87.15 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=63.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC--CCHHHHHHHHHHHhhcccCCCCCcH-----HHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED--FDVSRVTKSILRSIADDQIKDDDDL-----NSLQV 284 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~ 284 (1276)
....++|+|++|+|||||++.+++.... ++|+..+||.+.+. .++.++++.+...+-.......... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4567899999999999999999985433 37999999999865 7899999998665544332111111 11112
Q ss_pred HHHHH-hcCCcceEeecCCCc
Q 037340 285 KLKKQ-LSGKKILLVLDDVWN 304 (1276)
Q Consensus 285 ~l~~~-l~~kr~LlvlDdv~~ 304 (1276)
..+.. -++++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 368999999999943
No 113
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=3.6e-06 Score=98.65 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=82.3
Q ss_pred HhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccc
Q 037340 592 QMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLH 671 (1276)
Q Consensus 592 ~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~ 671 (1276)
..+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..+..|+.|++++| .+..+ ..+..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhc-cCCccchhhh
Confidence 337888999999999999998876688899999999999999988 45788888999999998 66666 4477799999
Q ss_pred eeecccccccccCccc-cCCccccccCCc
Q 037340 672 HLINFNVLSLKEMPKG-FGKLTCLLTLRR 699 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~~-i~~L~~L~~L~~ 699 (1276)
.+++++|. +..+... ...+.+|..+.+
T Consensus 166 ~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 166 LLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred cccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 99999988 6666442 355666665544
No 114
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=1e-06 Score=92.47 Aligned_cols=90 Identities=23% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHHhcCCCCceEEEEecCcccc-----ccCcccccccccceeeccCCc----ccccchh-------hhccccccEEecCC
Q 037340 590 VLQMLLNLPRLRVFSLRGYCIS-----KLPNEIGNLKHLRFLNLSGTS----IQFLPDS-------INSLYNLYTILLED 653 (1276)
Q Consensus 590 ~~~~l~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~----i~~lp~~-------i~~L~~L~~L~l~~ 653 (1276)
+.+.+..+..+..++|++|.+. .+-..+.+.++||.-+++.-. ..++|+. +-..++|++||||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3444677788899999999765 244566777888888888642 2355654 33456889999988
Q ss_pred ccchhh----hccccCCccccceeeccccc
Q 037340 654 CYWLKK----LCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 654 ~~~l~~----lp~~i~~L~~L~~L~l~~~~ 679 (1276)
|..-.. +-.-+.+++.|+||++.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 843222 22235578889999988887
No 115
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.2e-07 Score=93.38 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=82.5
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC---CCCCCCceeEeecCCCCccccccccCC-CCCc
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED---GFPTNLQSLEFEDLKISKPLFQWGLNR-FNSL 1173 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~n~~~~~~~~~~l~~-l~~L 1173 (1276)
|..|+.|.|.++.....+-..+..-.+|+.|+|+.|..++..... ..++.|.+|+|+.|............+ -++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 445555555555554444444555556666666666655433211 234556666666666554333222222 2456
Q ss_pred ceEEecCCCC-----CCccCCCCCCCcCeeeccCCCCCcc-ccCCCCCCCCcCceeccCCCCCc--ccCCCCCccccccc
Q 037340 1174 RKLKISGGFP-----DLVSSPRFPASLTELKISDMPSLER-LSSIGENLTSLKFLDLDNCPKLK--YFSKQGLPKSLLRL 1245 (1276)
Q Consensus 1174 ~~L~Ls~~~~-----~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~--~l~~~~l~~~L~~L 1245 (1276)
+.|+|+|.-. .+......+++|..||||+|..++. ....+.+++.|++|.++.|=.+- .+-+..-.++|..|
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 6666666311 1222233567777788887777764 23345677888888888884331 01111223578888
Q ss_pred cccCC
Q 037340 1246 IIDEC 1250 (1276)
Q Consensus 1246 ~i~~c 1250 (1276)
++.||
T Consensus 369 dv~g~ 373 (419)
T KOG2120|consen 369 DVFGC 373 (419)
T ss_pred Eeccc
Confidence 88776
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00024 Score=73.02 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=98.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+|||.++-++.+.=.+..... .++.+-.+.++|++|.||||||.-+++. ....+. ++-+.......-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 5799999999988877765443 4567788999999999999999999983 332221 11111111111122222
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCC--------CCCCCCcE-----------E
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPF--------GVGAPGSK-----------I 326 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l--------~~~~~gs~-----------i 326 (1276)
..+.. .=++.+|.+..-....-+.+..+. -..++++| |
T Consensus 99 t~Le~-----------------------~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 99 TNLEE-----------------------GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hcCCc-----------------------CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 22221 223344444332211111111111 11123333 3
Q ss_pred EEEecchhhhhhcCC--CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 327 VVTTRNLGVAESMGV--DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 327 lvTtr~~~v~~~~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
=.|||.-.+...+.. .-+.+++.-+.+|-.++..+.+..-.- +--++.+.+|+++..|-|--..
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHH
Confidence 358886444333321 245678888889988998887743221 2224678899999999995443
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0002 Score=84.80 Aligned_cols=199 Identities=16% Similarity=0.189 Sum_probs=113.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|-+..++.|..++... .-...+.++|+.|+||||+|+.+++..--..... ....+.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 46789998888888888543 1246778899999999999999987321110000 00111111111111
Q ss_pred HHhhcc----cCCCCCcHHHHH---HHHHH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQ---VKLKK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~---~~l~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
...... .......+++.. +.+.. -..+++-++|+|++.......+..+...+........+|++|.+ ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 000011122222 11111 12356679999999766666677777776544345556665544 3443
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGGLL 400 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 400 (1276)
..+ .-...+++.+++.++..+.+.+.+...+. .--.+.+..|++.++|.+ -|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 12357899999999999888875543221 112466788999999965 6777776554
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00021 Score=85.61 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=111.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc--cEEEEEEcCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+++......... ...+-.+ ..-...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHH
Confidence 478999999999999985432 244688999999999999999987321111000 0000000 00011111
Q ss_pred HHHHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchh
Q 037340 264 ILRSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLG 334 (1276)
Q Consensus 264 i~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~ 334 (1276)
|...-..+ ........+++.+.+... ..+++-++|+|++..........+...+......+++|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 11110000 000112233333222111 12455689999996666566777777665555566766555 3333
Q ss_pred hhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 037340 335 VAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKT 395 (1276)
Q Consensus 335 v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 395 (1276)
+...+. ....+++..++.++....+.+.+...+. .--.+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 332222 2357899999999998888876543321 11236678899999998865443
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00031 Score=80.99 Aligned_cols=181 Identities=14% Similarity=0.210 Sum_probs=104.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc--------ccccEEEEEEcCCCCH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR--------HFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~wv~~~~~~~~ 257 (1276)
.+++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+. +.. .|...+ +.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~-~~l~~~--- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNI-FELDAA--- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcce-EEeccc---
Confidence 46789999999999998543 23457889999999999999999763 211 111111 011100
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEec-c
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTR-N 332 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr-~ 332 (1276)
.....++..+.+.+. ..+++-++|+|++.......+..+...+......+.+|++|. .
T Consensus 86 -----------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 86 -----------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred -----------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 011112222111110 124556899999855444556666555544334455555553 3
Q ss_pred hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHH
Q 037340 333 LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGG 398 (1276)
Q Consensus 333 ~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 398 (1276)
..+...+ .....++++++++++....+.+.+...+. .--.+.+..+++.++|.+- |+..+-.
T Consensus 149 ~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 149 HKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred ccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2332221 22357899999999988888876643321 1124677888999998665 4444443
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.82 E-value=6.2e-05 Score=78.10 Aligned_cols=183 Identities=17% Similarity=0.186 Sum_probs=112.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEE-EEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAW-TCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i 264 (1276)
.+++|-+..+..+...+.. ...++...+|++|.|||+-|..++...--.+-|.+++. .++|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4688999999999998865 34688999999999999999988863222344555543 2333322111 1000
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHh--cCCcc-eEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhcC
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQL--SGKKI-LLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESMG 340 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~-LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~~ 340 (1276)
...+...+.....+.. ..++| .+|||++.....+.|..+...+......++.|..+.. ..+...+.
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0111111111110000 12333 7889999888889999998888776666776554443 22222111
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
--.-|..++|..++...-+...+...+... -.+..+.|++.++|.-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcH
Confidence 124588999999999888888775544322 2356677899998853
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00034 Score=83.35 Aligned_cols=199 Identities=15% Similarity=0.106 Sum_probs=112.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++...-....+ + .+.+.-...+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999998543 2234568999999999999999986311100000 0 0001111111111
Q ss_pred HH---------hhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchh
Q 037340 266 RS---------IADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLG 334 (1276)
Q Consensus 266 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~ 334 (1276)
.. +........+++.++.+.+... ..+++-++|+|++..........+...+........+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 0000000111222222222211 13556699999997766677777777776554566666555 4344
Q ss_pred hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 037340 335 VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGGLL 400 (1276)
Q Consensus 335 v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 400 (1276)
+...+ .-...+++..++.++..+.+.+.+...+. .--.+.+..|++..+|.+ -|+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43322 22467999999999988888775543221 112356677899999977 4555555544
No 122
>PF14516 AAA_35: AAA-like domain
Probab=97.80 E-value=0.0037 Score=70.32 Aligned_cols=202 Identities=11% Similarity=0.086 Sum_probs=118.7
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC-----CCHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED-----FDVSR 259 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~ 259 (1276)
.+..|.|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..+. ..| ..+++++..- .+..+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~-------~G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQ-------PGSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhc-------CCCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCHHH
Confidence 34567888666777777743 2468999999999999999999873222 233 4557776532 24666
Q ss_pred HHHHHHHHhhcccCC----------CCCcHHHHHHHHHHHh---cCCcceEeecCCCccCH------hhHhhhccCCCCC
Q 037340 260 VTKSILRSIADDQIK----------DDDDLNSLQVKLKKQL---SGKKILLVLDDVWNENY------ENWSILSRPFGVG 320 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~----------~~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~------~~~~~~~~~l~~~ 320 (1276)
.++.++..+...-.- ...........+.+.+ .+++.+|++|++..--. +-+..+.......
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 666666655443210 1112223333444433 26899999999943210 1122222111111
Q ss_pred C----CCcEEEEEecchh--hhhh-----cCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 321 A----PGSKIVVTTRNLG--VAES-----MGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 321 ~----~gs~ilvTtr~~~--v~~~-----~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
. ...-.+|...+.. .... +.....+++++++.+|...|..++..... ....++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~--------~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS--------QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC--------HHHHHHHHHHHCCC
Confidence 0 1112222222211 1111 12345789999999999999987642211 23388899999999
Q ss_pred hHHHHHHHHHhcCC
Q 037340 390 PLAAKTLGGLLRGR 403 (1276)
Q Consensus 390 PLai~~~~~~l~~~ 403 (1276)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998664
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00041 Score=81.04 Aligned_cols=167 Identities=13% Similarity=0.143 Sum_probs=101.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+.|+|..|+|||+|++.+.+ .+.... ..+++++ ..++...+...+.... ...+.+++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHh
Confidence 45689999999999999999988 333222 1233332 3456666666654311 1122334443
Q ss_pred cCCcceEeecCCCccC--HhhHhhhccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHh
Q 037340 291 SGKKILLVLDDVWNEN--YENWSILSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~--~~~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 358 (1276)
+ +.-+||+||+.... ....+.+...+.. ...|..||+|+... .+..++...-++.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 34588999995432 1112333322221 12455788887642 2333445566788999999999999
Q ss_pred hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 037340 359 LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGG 398 (1276)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 398 (1276)
+.+++...+- ...--+++..-|++.++|.|-.+.-+..
T Consensus 284 L~~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9988753221 0122357888899999999977665543
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=1.7e-05 Score=58.15 Aligned_cols=39 Identities=33% Similarity=0.409 Sum_probs=29.1
Q ss_pred cccceeeccCCcccccchhhhccccccEEecCCccchhhh
Q 037340 621 KHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKL 660 (1276)
Q Consensus 621 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 660 (1276)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 4688888888888888877888888888888888 45444
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.0004 Score=84.39 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=110.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||-+..++.+..++... .-...+.++|+.|+||||+|+.+++. +.... +-......+.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~----~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKA--VNCTT----NDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHH--hcCCC----CCCCCCCCccCHHHHHHh
Confidence 47899999999999888543 22345689999999999999999863 21100 000001111122222222
Q ss_pred HHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
...... ........+++.+.+... ..+++-++|+|++........+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 211110 000112223332222111 1245668999999655555667776666554456666666644 3333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
..+ .....+.+..++.++....+.+.+...+. . --.+.+..|++.++|.+-.+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-N---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 22356888899999888888776543221 1 12467788999999988654433
No 126
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00019 Score=86.06 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=111.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE-EcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC-VSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i 264 (1276)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+++...-...++...|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999999885432 234578999999999999998886321111111011111 00111111111111
Q ss_pred HHHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchhh
Q 037340 265 LRSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLGV 335 (1276)
Q Consensus 265 ~~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v 335 (1276)
...-... ........+++.+.+... ..+++-++|+||+........+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000112233443332222 23556689999996665566777777776544455655544 43444
Q ss_pred hhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 037340 336 AESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLG 397 (1276)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 397 (1276)
...+ .....+++.+++.++....+.+.+...+. .--.+.+..|++.++|..- |+..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3322 23467999999999988777765432221 1124677889999999554 544443
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.75 E-value=0.00026 Score=77.05 Aligned_cols=159 Identities=12% Similarity=0.143 Sum_probs=80.5
Q ss_pred eeecchhhHHHHHHHHhc---------CCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 187 KVYGREKDKEAIVELLLR---------DDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
.++|.+..+++|.+.... ......+....+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777766543211 10112234567889999999999999999863110011111123333221
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC--------HhhHhhhccCCCCCCCCcEEEEE
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN--------YENWSILSRPFGVGAPGSKIVVT 329 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~~~~~~~~~~l~~~~~gs~ilvT 329 (1276)
++ ..... ........+.+.+. ..-+|++|++..-. .+..+.+...+........+|++
T Consensus 84 -~l----~~~~~------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYI------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhc------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 11110 11111222222222 23488999995411 12334444444443333455555
Q ss_pred ecchhh----------hhhcCCCCceecCCCChhhHHHhhhhccc
Q 037340 330 TRNLGV----------AESMGVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 330 tr~~~v----------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
+...+. ..++ ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHH
Confidence 543222 1121 24578888888888888877654
No 128
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00041 Score=86.14 Aligned_cols=197 Identities=13% Similarity=0.078 Sum_probs=111.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-...... .....-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999985432 2345789999999999999999863211110000 0000000011111
Q ss_pred HH-------hhcccCCCCCcHHHHHHHHHH----HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-h
Q 037340 266 RS-------IADDQIKDDDDLNSLQVKLKK----QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-L 333 (1276)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~ 333 (1276)
.. +.... .....++++.+...+ -..+++-++|+|++.......+..++..+......+.+|++|.+ .
T Consensus 83 ~g~~~~~dv~eida-as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 83 PGGPGSLDVTEIDA-ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred cCCCCCCcEEEecc-cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 00 00000 011122333221111 12355568999999777777788888777765566666665543 3
Q ss_pred hhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 037340 334 GVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGGL 399 (1276)
Q Consensus 334 ~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 399 (1276)
.+...+. -.+.|++..++.++..+.+.+.....+. ..-.+....|++.++|.+. ++..+-.+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4443322 3467899999999988888765432221 1123556778999999884 44444333
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00057 Score=79.85 Aligned_cols=187 Identities=14% Similarity=0.133 Sum_probs=106.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc----ccc--------------EE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQI--------------KA 247 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~--------------~~ 247 (1276)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...-... -.+ .-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 478999999999999985432 2356789999999999999998763110000 000 00
Q ss_pred EEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEE
Q 037340 248 WTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKI 326 (1276)
Q Consensus 248 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~i 326 (1276)
|+.+.... ....+++.++.+.+.. -..+++-++|+|++..........+...+........+
T Consensus 92 ~~~i~g~~-----------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGAS-----------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccc-----------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 11111100 0001111111111111 11356678999998655445566666666554456666
Q ss_pred EEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHH
Q 037340 327 VVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGG 398 (1276)
Q Consensus 327 lvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 398 (1276)
|++|.. ..+...+ .....+++.++++++....+.+.+...+. .--.+.+..|++.++|.+ .|+..+-.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 666643 3332222 22357899999999988888765533221 112467788999999966 45554443
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.72 E-value=0.00069 Score=74.07 Aligned_cols=136 Identities=14% Similarity=0.090 Sum_probs=72.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
...+.++|++|+||||+|+.+++.......-...-|+.++.. .+.....+.. .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~--------~l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD--------DLVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH--------HHHHHHhccc------hHHHHHHHHHc---
Confidence 345789999999999999999873211111111225555421 1222221111 11122223222
Q ss_pred CcceEeecCCCcc---------CHhhHhhhccCCCCCCCCcEEEEEecchhhhhhc--------CCCCceecCCCChhhH
Q 037340 293 KKILLVLDDVWNE---------NYENWSILSRPFGVGAPGSKIVVTTRNLGVAESM--------GVDPAYQLKELSNDDC 355 (1276)
Q Consensus 293 kr~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~ 355 (1276)
..-+|++|++..- ..+....+...+.....+.+||+++......... .....+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2359999999531 1223334444444444556777777543322111 1235688899999998
Q ss_pred HHhhhhcccC
Q 037340 356 LCVLTQISLG 365 (1276)
Q Consensus 356 ~~l~~~~~~~ 365 (1276)
.+++.+.+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 8888776643
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00062 Score=82.03 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=108.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE-------cCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV-------SEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-------~~~~~~~ 258 (1276)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.+++.. ...+.. ..+-.+ ...++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~L-nC~~~~-~~~~pC~~C~~~~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANAL-NCSHKT-DLLEPCQECIENVNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHh-cccccC-CCCCchhHHHHhhcCCCcEE
Confidence 46889999999999999543 224566789999999999999998631 110100 000000 0000000
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEE-EEecchhhh
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIV-VTTRNLGVA 336 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~il-vTtr~~~v~ 336 (1276)
.+.+......+++.++.+.+... ..+++-++|+|++.......+..+...+........+| +|++...+.
T Consensus 91 --------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 --------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred --------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000000111122222222211 13566699999997666667777777665444455545 454444443
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGG 398 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 398 (1276)
..+ .-.+.+++.+++.++..+.+...+...+. ....+.+..|++.++|.+- |+..+-.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslLek 222 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIAEQ 222 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 322 22358999999999998888765433221 1123567789999998664 5544443
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00075 Score=79.14 Aligned_cols=195 Identities=15% Similarity=0.164 Sum_probs=110.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|-+..++.+..++... .-.++..++|+.|+||||+|+.+++.. ....... ..+...-...+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L-~c~~~~~------~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARAL-VCEQGPS------STPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHh-cCCCCCC------CCCCcccHHHHHHh
Confidence 46899999999999998543 234466899999999999999887631 1000000 00000000000000
Q ss_pred HHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~ 336 (1276)
...... ........+++.+.+... ..+++-++|+|++.....+....+...+......+++|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 000000 000011233333333221 12456689999997766667777777766555567777777653 222
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
..+ .-...+++.+++.++....+.+.+...+. .--++.+..|++.++|.+--+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 111 12357899999999998888766543321 112467788999999988544433
No 133
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.001 Score=78.23 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=104.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh--hc-----------------ccccE
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV--QR-----------------HFQIK 246 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~-----------------~f~~~ 246 (1276)
.+++|-+..++.+..++.... -.+.+.++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 368899999999999995432 2345678999999999999998763110 00 01111
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcE
Q 037340 247 AWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSK 325 (1276)
Q Consensus 247 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ 325 (1276)
.++..+... ..++...+.+.+... ..+++-++|+|++..........+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111000 111112222222111 135667999999966555566666666654444555
Q ss_pred EEEEe-cchhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 326 IVVTT-RNLGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 326 ilvTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
+|++| +...+...+ .....+.+.+++.++....+.+.+...+. ..-.+.+..|++.++|.+-.+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555 433333221 22357889999999988888776543221 112356777889999976544333
No 134
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.68 E-value=7e-06 Score=96.21 Aligned_cols=104 Identities=28% Similarity=0.333 Sum_probs=84.4
Q ss_pred CCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 596 NLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
.+..+..+++..|.|..+-..++.+++|.+|++.+|.|..+...+..+.+|++|++++| .+..+ .++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 45556666688888888666688999999999999999998766899999999999999 77777 45888899999999
Q ss_pred ccccccccCccccCCccccccCCceEec
Q 037340 676 FNVLSLKEMPKGFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 676 ~~~~~l~~lp~~i~~L~~L~~L~~~~~~ 703 (1276)
.+|. +..+. ++..+++|+.+++.++.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcch
Confidence 9998 77663 56667777777655443
No 135
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.67 E-value=0.00018 Score=77.04 Aligned_cols=168 Identities=17% Similarity=0.235 Sum_probs=103.4
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1276)
++.|.+|+.+++.+..++...+. .-+..|.|+|-.|.|||.+.+++.+.. . -..+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 56788999999999999865431 234456999999999999999999843 2 235899999999999999999
Q ss_pred HHHhh-cccCCCC-----CcHHHHHHHHHHH--hc--CCcceEeecCCCccCHhhHhhhc-----cCCCCCCCCcEEEEE
Q 037340 265 LRSIA-DDQIKDD-----DDLNSLQVKLKKQ--LS--GKKILLVLDDVWNENYENWSILS-----RPFGVGAPGSKIVVT 329 (1276)
Q Consensus 265 ~~~l~-~~~~~~~-----~~~~~~~~~l~~~--l~--~kr~LlvlDdv~~~~~~~~~~~~-----~~l~~~~~gs~ilvT 329 (1276)
+.+.. .+..... .+.......+.++ .. ++.++||||++.. ..+.+.+. ....-.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99985 2221111 1222223333331 12 4689999999933 22222211 000001122334444
Q ss_pred ecch---hhhhhcCCCC--ceecCCCChhhHHHhhhhc
Q 037340 330 TRNL---GVAESMGVDP--AYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 330 tr~~---~v~~~~~~~~--~~~l~~L~~~~~~~l~~~~ 362 (1276)
+-.. .....++... ++....-+.+|-.+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4432 1222234333 4556778888888888764
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.67 E-value=0.00024 Score=80.26 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=81.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+...+.+..++..+ ....++.++|++|+||||+|+.+++. ... ....++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHH
Confidence 57899999999999998542 23457777999999999999999873 221 123334333 111 1111111
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhc-CCC
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESM-GVD 342 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~-~~~ 342 (1276)
..+.... ...+.+-++|+||+... ..+....+...+.....++++|+||.... +...+ ...
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1110000 01134568899999544 22233334433444446778888886532 11111 112
Q ss_pred CceecCCCChhhHHHhhh
Q 037340 343 PAYQLKELSNDDCLCVLT 360 (1276)
Q Consensus 343 ~~~~l~~L~~~~~~~l~~ 360 (1276)
..+.+...+.++..+++.
T Consensus 153 ~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred eEEEeCCCCHHHHHHHHH
Confidence 356666666766665544
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00087 Score=81.13 Aligned_cols=196 Identities=14% Similarity=0.186 Sum_probs=109.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..--. ..+... ......-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 468899999999999986432 23567899999999999999998732111 110000 01111112222222
Q ss_pred HHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
...... ........+.+.+.+... ..+++-++|+|++.......+..+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111100 000112233333333221 1245568999999766666777777776654445555555544 3332
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKT 395 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 395 (1276)
..+ .....+++..++.++....+.+.+...+. . --.+.+..|++.++|.+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~---is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-E---IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 222 12356788889998888777765533221 1 1135678899999998764443
No 138
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.63 E-value=0.00013 Score=83.95 Aligned_cols=179 Identities=14% Similarity=0.113 Sum_probs=96.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
..++.|+++.++++.+.+.-.-. .+-...+-|.++|++|+|||++|+.+++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35789999999999987632110 01134567899999999999999999973 3322 233321
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------CHhhHhhhcc---CCCC--CC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------NYENWSILSR---PFGV--GA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~~~~~~~~~---~l~~--~~ 321 (1276)
.++ ..... ......+...+...-...+.+|++||+..- +.+....+.. .+.. ..
T Consensus 199 ~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 11111 011111222222222345789999999431 0111111221 1211 12
Q ss_pred CCcEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 322 PGSKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
.+..||.||...+... .+ .-+..+.+...+.++-.++|+.+..+..- ...-+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3567777776543222 11 12457899999999999999877643221 11122 34456666654
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00029 Score=88.31 Aligned_cols=154 Identities=14% Similarity=0.223 Sum_probs=83.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-----cc-ccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-----HF-QIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv~~~~~~~~~~ 259 (1276)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++. +.. .+ +..+|. ++ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~--~~~~~~p~~l~~~~~~~-~~----~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR--IAEGKVPENLKNAKIYS-LD----MGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH--HHhCCCchhhcCCeEEE-ec----HHH
Confidence 368999999999999885432 334579999999999999999873 321 11 233442 11 111
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHh-cCCcceEeecCCCcc---------CHhhHhhhccCCCCCCCCcEEEEE
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQL-SGKKILLVLDDVWNE---------NYENWSILSRPFGVGAPGSKIVVT 329 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvT 329 (1276)
+. . +.. ...+.++....+.+.+ +.++.+|++|++..- +.+..+.+...+.. + .-++|-+
T Consensus 249 l~----a---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~Iga 317 (731)
T TIGR02639 249 LL----A---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGS 317 (731)
T ss_pred Hh----h---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEe
Confidence 11 0 000 0111122222222222 346789999998521 01122233333322 1 2344544
Q ss_pred ecchhhhh------hc-CCCCceecCCCChhhHHHhhhhcc
Q 037340 330 TRNLGVAE------SM-GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 330 tr~~~v~~------~~-~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
|..++... .+ .-.+.+.+++++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 44322211 11 123578999999999999998654
No 140
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.61 E-value=0.00017 Score=81.35 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=75.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.......|+.+.||.+....+.......+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 4578899999999999854 34688899999999999999998543345677888999998887665543221
Q ss_pred HHhhcccCCCCCc-HHHHHHHHHHHh--cCCcceEeecCCCccCHhh-HhhhccCC
Q 037340 266 RSIADDQIKDDDD-LNSLQVKLKKQL--SGKKILLVLDDVWNENYEN-WSILSRPF 317 (1276)
Q Consensus 266 ~~l~~~~~~~~~~-~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~~~-~~~~~~~l 317 (1276)
- ... ...- .....+.+.+.. .++++++|+|++...+... +..+...+
T Consensus 247 P----~~v-gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 247 P----NGV-GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred C----CCC-CeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 1 000 0000 011122222222 2468999999996655433 44444333
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.00088 Score=69.81 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=80.0
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+.. + +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~~----------------------~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFFN----------------------E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhhc----------------------h-------hHH-hc
Confidence 678999999999999999887632 11 1111 00000 0 011 12
Q ss_pred cceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-------hhhhcCCCCceecCCCChhhHHHhhhhcccCC
Q 037340 294 KILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-------VAESMGVDPAYQLKELSNDDCLCVLTQISLGA 366 (1276)
Q Consensus 294 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 366 (1276)
.-++++||+..-.....-.+...+. ..|..||+|++... ...++...-++++++++.++-.+++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3578899995321111222211111 24668999987532 33344556689999999999888887766422
Q ss_pred CCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 367 RDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 367 ~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
+ .. --+++.+-|++++.|.--.+.
T Consensus 164 ~-l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 S-VT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C-CC---CCHHHHHHHHHHccCCHHHHH
Confidence 1 11 124677778888887655444
No 142
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.60 E-value=0.00015 Score=91.33 Aligned_cols=153 Identities=16% Similarity=0.206 Sum_probs=83.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc------cccEEE-EEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH------FQIKAW-TCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w-v~~~~~~~~~ 258 (1276)
..++||+.++++++..|.... ..-+.++|.+|+||||+|+.+++. +... ....+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh----
Confidence 468999999999999985532 334569999999999999999973 3211 122333 222110
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh-cCCcceEeecCCCccC-------HhhHh-hhccCCCCCCCCcEEEEE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQL-SGKKILLVLDDVWNEN-------YENWS-ILSRPFGVGAPGSKIVVT 329 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~-------~~~~~-~~~~~l~~~~~gs~ilvT 329 (1276)
..+... ...-.+.+...+.+.- .+++.+|++|++..-. ..+.. .+...+..+ .-++|-|
T Consensus 255 ---------~ag~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~Iga 322 (852)
T TIGR03345 255 ---------QAGASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAA 322 (852)
T ss_pred ---------hccccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEe
Confidence 000000 1111112222222222 2468999999984421 11111 123333221 2455655
Q ss_pred ecchhhhhhc-------CCCCceecCCCChhhHHHhhhhc
Q 037340 330 TRNLGVAESM-------GVDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 330 tr~~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
|...+....+ .-.+.+.+++++.++..+++...
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 5543221111 12358999999999999997544
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.001 Score=80.52 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=109.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh---------------------cccc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ---------------------RHFQ 244 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~f~ 244 (1276)
.+++|.+..++.+..++... .-.+.+.++|+.|+||||+|+.++....-. .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 46899999999999998543 223557899999999999999887632100 0121
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCC
Q 037340 245 IKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVG 320 (1276)
Q Consensus 245 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~ 320 (1276)
...+..+. ....+++.+.+.+. ..+++-++|+|++.......+..+...+...
T Consensus 92 -~~~ld~~~----------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 -IHELDAAS----------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred -eEEecccc----------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 11111111 11122332222211 1245558899999776666777887777655
Q ss_pred CCCcEEEEEe-cchhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 321 APGSKIVVTT-RNLGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 321 ~~gs~ilvTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
...+.+|++| +...+...+ .-...+++.+++.++....+.+.+...+. ..-.+.+..|++.++|..- |+..+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4566666544 444444332 23467999999999998888876543221 1123567889999999664 43333
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.59 E-value=0.00097 Score=77.94 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=91.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+.|+|..|+|||+||+.+++. ..... ..+++++. .++...+...+... ..+. +.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEE----FKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHH----HHHHH
Confidence 457899999999999999999983 43333 23445543 33344455444321 1222 23333
Q ss_pred cCCcceEeecCCCccCHh-h-HhhhccCCCC-CCCCcEEEEEecc-hh--------hhhhcCCCCceecCCCChhhHHHh
Q 037340 291 SGKKILLVLDDVWNENYE-N-WSILSRPFGV-GAPGSKIVVTTRN-LG--------VAESMGVDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~-~-~~~~~~~l~~-~~~gs~ilvTtr~-~~--------v~~~~~~~~~~~l~~L~~~~~~~l 358 (1276)
++ .-+||+||+...... . .+.+...+.. ...|..+|+|+.. +. +..++.....+.+++.+.++-.++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 348999999542111 1 1222222211 1134567887764 21 222333345688999999999999
Q ss_pred hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 359 LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
+.+.+..... . --+++...|++.+.|..-.+.
T Consensus 277 l~~~~~~~~~-~---l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGL-E---LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCC-C---CCHHHHHHHHHhcCCCHHHHH
Confidence 9887754321 1 124677888888888765433
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.57 E-value=0.00074 Score=73.97 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
..+.++|++|+|||++|+.++............-|+.++. . +++..+.+.. .......+.+. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---c
Confidence 3688999999999999988776221111111223555542 1 1222222111 11222223222 3
Q ss_pred cceEeecCCCcc---------CHhhHhhhccCCCCCCCCcEEEEEecchhhhhhc--------CCCCceecCCCChhhHH
Q 037340 294 KILLVLDDVWNE---------NYENWSILSRPFGVGAPGSKIVVTTRNLGVAESM--------GVDPAYQLKELSNDDCL 356 (1276)
Q Consensus 294 r~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~ 356 (1276)
.-+|++|++..- ..+.+..+...+.....+.+||+++......... .....+.+++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368899999521 1223444555554444566777776533221111 11356889999999998
Q ss_pred Hhhhhccc
Q 037340 357 CVLTQISL 364 (1276)
Q Consensus 357 ~l~~~~~~ 364 (1276)
+++.+.+.
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 88877653
No 146
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=9.6e-06 Score=73.14 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=42.9
Q ss_pred cCCCCceEEEEecCccccccCccccc-ccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGN-LKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
+....+|...+|++|.+..+|+.|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 44444555555555555555544422 22455555555555555555555555555555555 34444444444555555
Q ss_pred eeccccc
Q 037340 673 LINFNVL 679 (1276)
Q Consensus 673 L~l~~~~ 679 (1276)
|+..++.
T Consensus 128 Lds~~na 134 (177)
T KOG4579|consen 128 LDSPENA 134 (177)
T ss_pred hcCCCCc
Confidence 5544444
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.49 E-value=0.0026 Score=74.01 Aligned_cols=155 Identities=14% Similarity=0.107 Sum_probs=87.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
....+.|+|+.|+|||+||+.+++. +......+++++. ..+...+...+... . .+.+++.++
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~------~----~~~f~~~~~ 201 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG------E----MQRFRQFYR 201 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc------h----HHHHHHHcc
Confidence 3467899999999999999999983 3332233445542 33444444444321 1 122333333
Q ss_pred CCcceEeecCCCccCHhh--HhhhccCCCC-CCCCcEEEEEecc-h--------hhhhhcCCCCceecCCCChhhHHHhh
Q 037340 292 GKKILLVLDDVWNENYEN--WSILSRPFGV-GAPGSKIVVTTRN-L--------GVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~--~~~~~~~l~~-~~~gs~ilvTtr~-~--------~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
+.-++++||+....... .+.+...+.. ...|..||+||.. + .+..++.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34588899984422111 1222222110 0135578888854 2 22333444568899999999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 360 TQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
.+++...+. .. -+++..-|++.+.|.
T Consensus 281 ~~k~~~~~~-~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSI-RI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCC-CC---CHHHHHHHHHhcCCC
Confidence 887754321 11 135566677766654
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0024 Score=76.44 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=109.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|-+..++.+..++... .-.+.+.++|+.|+||||+|+.+++..--..... ...+.... ..+.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~----~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECS----SCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccch----HHHHHH
Confidence 46899999999999999543 2345688999999999999999987321110000 00000000 001111
Q ss_pred HHhhcc----cCCCCCcHHHHHHHH---HH-HhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKL---KK-QLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l---~~-~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~ 336 (1276)
..-... ........+++.+.. .. -..+++-++|+|++.......+..+...+........+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 000112233332222 11 12356668999999776666777787777655556666666543 3333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
..+ .-...+++.+++.++..+.+.+.+...+. +--++.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 222 12356889999999988888776543221 122467777999999987533
No 149
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.44 E-value=0.0043 Score=63.89 Aligned_cols=125 Identities=23% Similarity=0.249 Sum_probs=71.3
Q ss_pred ccCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 183 VNEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 183 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
+.-.+++|.|.+++.+++-...-- .+....-+-++|..|.|||++++++.+...-+. .--|.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH--------
Confidence 445689999999998887432111 122345677899999999999999987322111 122333322
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhccCCCCC---CCCcEEE-EEecchhh
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILSRPFGVG---APGSKIV-VTTRNLGV 335 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~~~l~~~---~~gs~il-vTtr~~~v 335 (1276)
...++..+.+.++. ...||+|.+||+.-+ ....+..++..+..+ .+...+| +||-.++.
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 22333344444442 357999999998432 234456665555432 2333344 45544443
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.0019 Score=78.10 Aligned_cols=198 Identities=16% Similarity=0.162 Sum_probs=108.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--....+ ....+.-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 478999999999999985432 234568999999999999999886311000000 00000001111110
Q ss_pred HH-------hhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchhhh
Q 037340 266 RS-------IADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLGVA 336 (1276)
Q Consensus 266 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~ 336 (1276)
.. +.+......+++.++.+.+... ..+++-++|+|++..........+...+........+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222222222111 13455689999996666566777776665544556666555 444444
Q ss_pred hhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh-HHHHHHHHH
Q 037340 337 ESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP-LAAKTLGGL 399 (1276)
Q Consensus 337 ~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~ 399 (1276)
..+. -...+++.+++.++....+...+...+. .--.+.+..|++.++|.. .|+..+-..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3322 2357889999999888777665432221 112456778899999865 555555433
No 151
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0025 Score=70.96 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDF 369 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 369 (1276)
+++-++|+|++...+......+...+.....++.+|+||.+. .+...+ +--+.+.+.+++.+++.+.+.+.... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C--
Confidence 445566789998777777888877776555677788777764 333222 22357899999999999888765311 1
Q ss_pred CCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 370 NMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
..+.+..++..++|.|..+..+
T Consensus 182 -----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 -----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1244567788999999755444
No 152
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=2.1e-06 Score=98.02 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCC
Q 037340 977 GLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCS 1018 (1276)
Q Consensus 977 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~ 1018 (1276)
.+++++.|.+.....-.-. .|-.+..+.+|++|.+.+|+
T Consensus 82 ~lqkt~~lkl~~~pa~~pt---~pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 82 FLQKTKVLKLLPSPARDPT---EPISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred HHhhheeeeecccCCCCCC---CCceeccccceeeEEecCcc
Confidence 4556666665554433221 14456678899999999984
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.003 Score=70.00 Aligned_cols=196 Identities=14% Similarity=0.133 Sum_probs=112.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh-------------hcccccEEEEEEc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV-------------QRHFQIKAWTCVS 252 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~f~~~~wv~~~ 252 (1276)
.+++|.+..++.+...+..+. -.+...++|+.|+||+++|..+++..-- ...+....|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368899999999999985432 2478899999999999999888763110 1112233444321
Q ss_pred CCCCHHHHHHHHHHHhhcc-cCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEE
Q 037340 253 EDFDVSRVTKSILRSIADD-QIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKI 326 (1276)
Q Consensus 253 ~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~i 326 (1276)
...+...+....++..+.. .......+++.. .+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 1000000111111121100 000122233332 233333 3566799999997666667777777665443 3455
Q ss_pred EEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHH
Q 037340 327 VVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKT 395 (1276)
Q Consensus 327 lvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 395 (1276)
|++|.+ ..+...+ .-.+.+.+.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 555544 3333332 2346799999999999999987642111 111235788899999975544
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.0014 Score=73.40 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=85.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
....+.|+|..|.|||.|++++.+ ...........+.++ .+.....++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 577899999999999999999998 555555533334333 233344444444321 223455555
Q ss_pred CCcceEeecCCCccCH-hhH-hhhccCCCC-CCCCcEEEEEecc---------hhhhhhcCCCCceecCCCChhhHHHhh
Q 037340 292 GKKILLVLDDVWNENY-ENW-SILSRPFGV-GAPGSKIVVTTRN---------LGVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~ilvTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
.-=++++||++--.. +.| +.+...|.. ...|-.||+|++. +++..++...-++++.+.+.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 344889999954211 112 222222211 1234489999964 344555667788999999999999999
Q ss_pred hhcccCCC
Q 037340 360 TQISLGAR 367 (1276)
Q Consensus 360 ~~~~~~~~ 367 (1276)
.+++....
T Consensus 254 ~kka~~~~ 261 (408)
T COG0593 254 RKKAEDRG 261 (408)
T ss_pred HHHHHhcC
Confidence 88765433
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.40 E-value=0.00064 Score=86.36 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=82.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchh---hhccc-ccEEEEEEcCCCCHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDR---VQRHF-QIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 261 (1276)
..++||+++++++++.|.... .+-+.++|++|+|||++|+.++.... +.... +..+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 358999999999999996532 33457999999999999999987321 00111 234452 1 11111
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-------HhhHhhhccCCCCCCCCcEEEEEecchh
Q 037340 262 KSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-------YENWSILSRPFGVGAPGSKIVVTTRNLG 334 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 334 (1276)
+.+... ...-.+.+...+.+.-..++.+|++|++..-. ..+...+..+....+ .-++|.+|....
T Consensus 247 ------~ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 247 ------LAGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred ------hccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 111111 11111122223322223568899999993210 001112222221111 235555555444
Q ss_pred hhhh-------cCCCCceecCCCChhhHHHhhhh
Q 037340 335 VAES-------MGVDPAYQLKELSNDDCLCVLTQ 361 (1276)
Q Consensus 335 v~~~-------~~~~~~~~l~~L~~~~~~~l~~~ 361 (1276)
.... .....++.++..+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 3221 11235678888888888888764
No 156
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0017 Score=75.85 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=92.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc-c-cEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF-Q-IKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+.|+|..|+|||+||+.+++ .....+ . .++|++. .++..++...+... ..+ .+++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~----~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLN----EFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHH----HHHHHH
Confidence 45699999999999999999998 343333 2 3455543 34455555554321 122 233333
Q ss_pred cCCcceEeecCCCccC-HhhH-hhhccCCCC-CCCCcEEEEEec-chh--------hhhhcCCCCceecCCCChhhHHHh
Q 037340 291 SGKKILLVLDDVWNEN-YENW-SILSRPFGV-GAPGSKIVVTTR-NLG--------VAESMGVDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~-~~~~-~~~~~~l~~-~~~gs~ilvTtr-~~~--------v~~~~~~~~~~~l~~L~~~~~~~l 358 (1276)
..+.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+. +..++.....+.+++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3445689999995321 1111 122222211 113457888875 322 222334456788999999999999
Q ss_pred hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 359 LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
+.+.+..... .. -+++...|++.+.|.--.+
T Consensus 272 L~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIEHG-EL---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhcCC-CC---CHHHHHHHHhccccCHHHH
Confidence 9887653221 11 2467788888888764433
No 157
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.38 E-value=0.00042 Score=79.62 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=88.2
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.+.+++++.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++ +....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----
Confidence 4678999999999887742100 0112456788999999999999999998 343333 222111
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------H---hhHhhhccCCCC--CCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------Y---ENWSILSRPFGV--GAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~---~~~~~~~~~l~~--~~~ 322 (1276)
++ ..... ......+...+.....+.+.+|++|++..-. . .....+...+.. ...
T Consensus 252 eL----~~k~~------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 252 EL----IQKYL------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred hh----hhhhc------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 11 11111 1111122233333334677899999973210 0 011112222211 123
Q ss_pred CcEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhccc
Q 037340 323 GSKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 323 gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
+.+||+||...+.... + ..+..+.+...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876443322 1 1345788999999999999987653
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0035 Score=75.40 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=105.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++..--...-+ ..+.+.-...+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 478999999999999986532 245677899999999999999876211000000 00111111111111
Q ss_pred HHhhcc----cCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe-cchhhh
Q 037340 266 RSIADD----QIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT-RNLGVA 336 (1276)
Q Consensus 266 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt-r~~~v~ 336 (1276)
.....+ ........++..+.+.+. ..+++-++|+|++..-....+..+...+........+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 100000 000112222222222111 13566688999996655566777776665443455555444 433333
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
..+ .....+++.+++.++....+.+.+...+. .--.+.+..|++.++|.+..+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 222 12356888899999988888776543221 112356778888998877533
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.35 E-value=0.0013 Score=77.85 Aligned_cols=159 Identities=15% Similarity=0.163 Sum_probs=92.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccc--cEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
....+.|+|..|+|||+||+.+++ +....+. .+++++.. ++...+...+... .. ..+.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~----~~~~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TM----EEFKEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cH----HHHHHH
Confidence 346789999999999999999998 4444432 23454332 3334444444221 11 223333
Q ss_pred hcCCcceEeecCCCccCHh--hHhhhccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHH
Q 037340 290 LSGKKILLVLDDVWNENYE--NWSILSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLC 357 (1276)
Q Consensus 290 l~~kr~LlvlDdv~~~~~~--~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 357 (1276)
++ +.-+||+||+...... ..+.+...+.. ...|..||+|+... .+..++.....+++++.+.++-.+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 3448999999542111 11222221111 11344688877643 123344455679999999999999
Q ss_pred hhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 358 VLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
++.+.+..... .--+++...|++.++|..-.+
T Consensus 288 il~~~~~~~~~----~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 288 ILKKKAEEEGI----DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHcCC----CCCHHHHHHHHcCcCCCHHHH
Confidence 99988754221 112467888999998876543
No 160
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.35 E-value=0.0022 Score=79.98 Aligned_cols=51 Identities=31% Similarity=0.443 Sum_probs=40.8
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.+++|.++.+++|.+++............++.++|++|+||||+|+.++.
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999988643221223456899999999999999999986
No 161
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.34 E-value=0.00038 Score=67.12 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037340 216 ISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~ 236 (1276)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.33 E-value=5.2e-05 Score=68.54 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=69.2
Q ss_pred CceEEEEecCccccccCcc---cccccccceeeccCCcccccchhhhc-cccccEEecCCccchhhhccccCCcccccee
Q 037340 598 PRLRVFSLRGYCISKLPNE---IGNLKHLRFLNLSGTSIQFLPDSINS-LYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~---i~~L~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
+.+-.+||+.|.+-.+++. +.+..+|...+|++|.+..+|+.|.. .+...+|++++| .+..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3455667777776655544 34556677778888877777777653 347777888777 677778777788888888
Q ss_pred ecccccccccCccccCCccccccCC
Q 037340 674 INFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
+++.|. +...|.-|..|.+|-.|+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 887777 667777776666666664
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.002 Score=82.27 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=82.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc------ccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF------QIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~ 259 (1276)
..++||+.++++++..|... ...-+.++|++|+|||++|+.+++. +...+ ...+|.- +...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 35899999999999999543 2344568999999999999998873 32211 2233321 1111
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc-CCcceEeecCCCccC-------HhhHhhhccCCCCCCCCcEEEEEec
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLS-GKKILLVLDDVWNEN-------YENWSILSRPFGVGAPGSKIVVTTR 331 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~-------~~~~~~~~~~l~~~~~gs~ilvTtr 331 (1276)
+. .+... ...-...+...+...-+ +++.+|++|++..-. ..+...+..+....+ .-++|-+|.
T Consensus 240 l~-------a~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 LI-------AGAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred Hh-------hcchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 10 01000 11111122222332222 468999999995311 011122222222222 234554444
Q ss_pred chhhhhh-------cCCCCceecCCCChhhHHHhhhhcc
Q 037340 332 NLGVAES-------MGVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 332 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
....... ..-.+.+.+...+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4333111 1123568899999999999887553
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.0032 Score=74.49 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+.|+|..|+|||.|++.+++. ....+ ..+++++. .++..++...+... .. +.+++.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~----~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KG----DSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cH----HHHHHHh
Confidence 345899999999999999999983 33322 23445433 33444444433221 11 1233333
Q ss_pred cCCcceEeecCCCccCH-hhH-hhhccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHh
Q 037340 291 SGKKILLVLDDVWNENY-ENW-SILSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 358 (1276)
.. -=+||+||+..... +.| +.+...+.. ...|..|||||+.. .+..++...-+++++..+.+.-.++
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 32 34889999954321 222 222222211 12355788888752 3344555667899999999999999
Q ss_pred hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 359 LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
+.+++....- .. -.+++.-|++++.+..-.+
T Consensus 455 L~kka~~r~l-~l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQL-NA---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCC-CC---CHHHHHHHHHhccCCHHHH
Confidence 9988754321 11 2467777888877664433
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00056 Score=84.36 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=84.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-----cccEEEEEEcCCCCHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~ 260 (1276)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|+.+++.. +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 358999999999999986532 2334689999999999999998732 1111 13344421 11111
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHh-cCCcceEeecCCCcc--------CHhhHhhhccCCCCCCCCcEEEEEec
Q 037340 261 TKSILRSIADDQIKDDDDLNSLQVKLKKQL-SGKKILLVLDDVWNE--------NYENWSILSRPFGVGAPGSKIVVTTR 331 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~--------~~~~~~~~~~~l~~~~~gs~ilvTtr 331 (1276)
+.+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-++|-+|.
T Consensus 254 -------laG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt 323 (758)
T PRK11034 254 -------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTT 323 (758)
T ss_pred -------hcccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCC
Confidence 11111 0112222222222222 356789999999431 1122222333332221 234554554
Q ss_pred chhhhhhc-------CCCCceecCCCChhhHHHhhhhcc
Q 037340 332 NLGVAESM-------GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 332 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.+++...+ .-.+.+.+++++.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33321111 123578999999999999988643
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.25 E-value=0.0029 Score=73.84 Aligned_cols=166 Identities=11% Similarity=0.144 Sum_probs=89.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-----cccEEEEEEcC
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQIKAWTCVSE 253 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~ 253 (1276)
.++.|.+.+++++.+.+.-.-.. +-...+-+.++|++|+|||++|+.+++. .... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccc
Confidence 45788999999998876421000 1123456899999999999999999984 3222 12234444432
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccC-------Hhh-----HhhhccCCCCC
Q 037340 254 DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNEN-------YEN-----WSILSRPFGVG 320 (1276)
Q Consensus 254 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~-------~~~-----~~~~~~~l~~~ 320 (1276)
. ++ +....+. .......+.+..++. -.+++++|++|+++.-- ..+ ...+...+...
T Consensus 260 ~----eL----l~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 260 P----EL----LNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred h----hh----cccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 11 1110000 001111222222222 13578999999995310 001 12333333221
Q ss_pred --CCCcEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhccc
Q 037340 321 --APGSKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 321 --~~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
..+..||.||...+... .+ .-+..++++..+.++..++|.++..
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 13445666665543222 11 2245689999999999999988753
No 167
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0054 Score=71.28 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=69.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1276)
+.+.+|.++-+++|.+++.-....++.+.+++..+|++|||||++|+.++. .....| +-++++.-.|+.++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIKGH- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhccc-
Confidence 567889999999999999766554567789999999999999999999997 344444 23455555555443111
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCC
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDV 302 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 302 (1276)
.......-...+.+.+++. +..+=|+.+|.|
T Consensus 484 ------RRTYVGAMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 484 ------RRTYVGAMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ------ceeeeccCChHHHHHHHhh-CCCCceEEeehh
Confidence 0001122223344444443 445668888988
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=9.6e-05 Score=75.85 Aligned_cols=84 Identities=23% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCCceEEEEecCcccccc---CcccccccccceeeccCCcccccchhh-hccccccEEecCCccch-hhhccccCCcccc
Q 037340 596 NLPRLRVFSLRGYCISKL---PNEIGNLKHLRFLNLSGTSIQFLPDSI-NSLYNLYTILLEDCYWL-KKLCQDMGNLTKL 670 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L 670 (1276)
..+.++.|||.+|.|+.- -.-+.+|++|++|+|+.|.+..--... -.+.+|++|.|.+++.- ...-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 445677777777776633 233467777777777777544211111 24557777777666321 2223335566666
Q ss_pred ceeeccccc
Q 037340 671 HHLINFNVL 679 (1276)
Q Consensus 671 ~~L~l~~~~ 679 (1276)
+.|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666654
No 169
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.23 E-value=0.0012 Score=75.59 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=88.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
-.++.|.+..+++|.+.+.-.-. .+-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688999999888886631100 01134577899999999999999999983 33223 22211
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------CH---hhHhhhccCCCC--CC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------NY---ENWSILSRPFGV--GA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~---~~~~~~~~~l~~--~~ 321 (1276)
.. +..... ......+.+.+.......+.+|++|++..- +. ..+..+...+.. ..
T Consensus 213 s~----l~~k~~------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SE----FVQKYL------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HH----HHHHhc------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 111111 111122233333333567889999997421 00 011222222221 12
Q ss_pred CCcEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhccc
Q 037340 322 PGSKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
.+..||+||...+.... + .-+..+.+...+.++..++|..+..
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 45678888876443221 1 2345688888888888888876543
No 170
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.21 E-value=0.0022 Score=63.71 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=36.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4789999999988776643 4567889999999999998887776
No 171
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.20 E-value=0.0033 Score=79.42 Aligned_cols=51 Identities=35% Similarity=0.519 Sum_probs=39.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.+++|.++.+++|.+++...........+++.++|++|+|||++|+.+++
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999877532111223446899999999999999999997
No 172
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.0017 Score=78.04 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-.+++|-++.++++..|+..... .....+++.|+|++|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999865432 2234568999999999999999999873
No 173
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=4.4e-05 Score=77.21 Aligned_cols=93 Identities=26% Similarity=0.236 Sum_probs=64.8
Q ss_pred HHHhcCCCCceEEEEecCcccc-----ccCcccccccccceeeccCCccc----ccch-------hhhccccccEEecCC
Q 037340 590 VLQMLLNLPRLRVFSLRGYCIS-----KLPNEIGNLKHLRFLNLSGTSIQ----FLPD-------SINSLYNLYTILLED 653 (1276)
Q Consensus 590 ~~~~l~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~----~lp~-------~i~~L~~L~~L~l~~ 653 (1276)
+...+..+..+..+|||+|.|. .+...|.+-.+|+..+++.-... ++|+ .+-++++|++.+||.
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD 101 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD 101 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc
Confidence 3444555778888999998875 34556777788888888853221 3333 456789999999998
Q ss_pred ccchhhhccc----cCCccccceeeccccccccc
Q 037340 654 CYWLKKLCQD----MGNLTKLHHLINFNVLSLKE 683 (1276)
Q Consensus 654 ~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~ 683 (1276)
|..-...|+. |++-+.|.||.+++|. +..
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 8554444433 5677899999999887 443
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.0015 Score=64.02 Aligned_cols=87 Identities=17% Similarity=0.017 Sum_probs=46.5
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
+.+.|+|++|+||||+|+.++.. .......++++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999984 2222223555554443322222111 11111111 1222222223333444433
Q ss_pred -cceEeecCCCcc
Q 037340 294 -KILLVLDDVWNE 305 (1276)
Q Consensus 294 -r~LlvlDdv~~~ 305 (1276)
..+|++|+++..
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999664
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.18 E-value=0.00026 Score=86.39 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=82.1
Q ss_pred cCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccc--hhhhcc
Q 037340 566 CGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLP--DSINSL 643 (1276)
Q Consensus 566 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~L 643 (1276)
.-++.||+|.+.+-.+ ...++..-+.+|++|+.||+|+++++.+ ..+++|++|+.|.+++-.+..-+ ..+.+|
T Consensus 145 ~~LPsL~sL~i~~~~~----~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQF----DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hhCcccceEEecCcee----cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 3588999999877532 2233444489999999999999999988 68999999999999987776432 457899
Q ss_pred ccccEEecCCccch------hhhccccCCccccceeeccccc
Q 037340 644 YNLYTILLEDCYWL------KKLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l------~~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
++|++||+|..... ...-+.-..|++||.||.+++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99999999976322 1111222348999999998775
No 176
>PRK08116 hypothetical protein; Validated
Probab=97.17 E-value=0.0011 Score=71.75 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=57.5
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
..+.++|..|+|||.||..+++. ...+...+++++ ..+++..+........ ...... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 46889999999999999999984 433334456664 3334444444432211 111112 23333433
Q ss_pred cceEeecCCCccCHhhHhh--hccCCCC-CCCCcEEEEEecc
Q 037340 294 KILLVLDDVWNENYENWSI--LSRPFGV-GAPGSKIVVTTRN 332 (1276)
Q Consensus 294 r~LlvlDdv~~~~~~~~~~--~~~~l~~-~~~gs~ilvTtr~ 332 (1276)
. ||||||+..+...+|.. +...+.. ...|..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999995433333432 3222221 1245678999874
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.14 E-value=0.0033 Score=79.78 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=37.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++||+.+++++++.|... ...-+.++|.+|+|||++|+.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999653 2344669999999999999999873
No 178
>PRK10536 hypothetical protein; Provisional
Probab=97.10 E-value=0.0085 Score=62.67 Aligned_cols=131 Identities=13% Similarity=0.195 Sum_probs=75.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE----EcC-----CCC
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC----VSE-----DFD 256 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----~~~-----~~~ 256 (1276)
..+.+|......+..++.. ..+|.+.|.+|+|||+||..+..+.-....|+.++-.. +++ +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467888888999988843 24899999999999999999887422233444333221 111 012
Q ss_pred HHHH----HHHHHHHhhcccCCCCCcHHHHHHHH-----------HHHhcCCcc---eEeecCCCccCHhhHhhhccCCC
Q 037340 257 VSRV----TKSILRSIADDQIKDDDDLNSLQVKL-----------KKQLSGKKI---LLVLDDVWNENYENWSILSRPFG 318 (1276)
Q Consensus 257 ~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~l-----------~~~l~~kr~---LlvlDdv~~~~~~~~~~~~~~l~ 318 (1276)
..+- ++-+.+.+..-. .. +.....+ -.+++|+.+ +||+|++.+.+..+...+...+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~- 200 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL- 200 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--Ch---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc-
Confidence 2211 122222221110 00 1111111 234566554 9999999776666666665544
Q ss_pred CCCCCcEEEEEecc
Q 037340 319 VGAPGSKIVVTTRN 332 (1276)
Q Consensus 319 ~~~~gs~ilvTtr~ 332 (1276)
+.+|++|+|--.
T Consensus 201 --g~~sk~v~~GD~ 212 (262)
T PRK10536 201 --GENVTVIVNGDI 212 (262)
T ss_pred --CCCCEEEEeCCh
Confidence 478999998764
No 179
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.10 E-value=3.2e-05 Score=88.72 Aligned_cols=103 Identities=25% Similarity=0.271 Sum_probs=67.5
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchh-hhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
+.-++.|+.|||++|+++..- .+..|.+|++|||++|.+..+|.- ...+ +|+.|++++| .++.+ .++.+|.+|++
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 666777788888888777664 677778888888888877777653 2233 3788888877 56666 45777888888
Q ss_pred eecccccccccCc--cccCCccccccCCceE
Q 037340 673 LINFNVLSLKEMP--KGFGKLTCLLTLRRFV 701 (1276)
Q Consensus 673 L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~ 701 (1276)
||+++|- +...- .-++.|..|..|++-.
T Consensus 259 LDlsyNl-l~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 259 LDLSYNL-LSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred cchhHhh-hhcchhhhHHHHHHHHHHHhhcC
Confidence 8887775 33221 1134455555555433
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.019 Score=58.95 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=103.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE-cCCCCHHHHHHHHHHHhhcccCCCCCcHHHH----HHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV-SEDFDVSRVTKSILRSIADDQIKDDDDLNSL----QVKL 286 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~~l 286 (1276)
+.+++.|+|.-|.|||.+++..... .. . +.++-|.+ ....+...+...++..+... ........ ...+
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~-~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~---p~~~~~~~~e~~~~~L 122 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LN-E-DQVAVVVIDKPTLSDATLLEAIVADLESQ---PKVNVNAVLEQIDREL 122 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cC-C-CceEEEEecCcchhHHHHHHHHHHHhccC---ccchhHHHHHHHHHHH
Confidence 4569999999999999999944331 11 1 12222333 34557778888888888763 22333333 3333
Q ss_pred HHHh-cCCc-ceEeecCCCccCHhhHhhhccCCC---CCCCCcEEEEEecc---h----hhhhhcC--CCCceecCCCCh
Q 037340 287 KKQL-SGKK-ILLVLDDVWNENYENWSILSRPFG---VGAPGSKIVVTTRN---L----GVAESMG--VDPAYQLKELSN 352 (1276)
Q Consensus 287 ~~~l-~~kr-~LlvlDdv~~~~~~~~~~~~~~l~---~~~~gs~ilvTtr~---~----~v~~~~~--~~~~~~l~~L~~ 352 (1276)
.... +++| ..+++||..+......+.+.-... .+..--+|+..-.- + .+....+ ..-.|++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 5777 899999997765555555432221 11111123322211 0 1111111 111289999999
Q ss_pred hhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 037340 353 DDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGL 399 (1276)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 399 (1276)
++...++..+..+... ..+---.+....|..+..|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9888887766554432 111122456677899999999999877643
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=97.06 E-value=0.0045 Score=75.07 Aligned_cols=177 Identities=16% Similarity=0.203 Sum_probs=96.7
Q ss_pred CeeecchhhHHHHHHHH---hcCCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELL---LRDDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|+.++.. ... -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccHH----H
Confidence 46888887766665554 22110 01123456899999999999999999873 221 22333211 1
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC----------Hhh----HhhhccCCCC--CCCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN----------YEN----WSILSRPFGV--GAPG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~----~~~~~~~l~~--~~~g 323 (1276)
+ ..... ......+...+.+.....+++|++||+..-. ... +..+...+.. ...+
T Consensus 252 f----~~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 F----VEMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred H----HHHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1 11110 1112233444555556778999999994310 111 2223322221 2345
Q ss_pred cEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC
Q 037340 324 SKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG 388 (1276)
Q Consensus 324 s~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 388 (1276)
-.||.||...+... .+ .-+..+.++..+.++-.++++.++.... . ........+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L--SPDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c--chhHHHHHHHhcCCC
Confidence 56777776643322 11 2346788888888888888887764311 1 112344667777777
No 182
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0046 Score=72.37 Aligned_cols=165 Identities=21% Similarity=0.242 Sum_probs=93.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1276)
+.+.+|.++.+++|+++|.-......-..+++++||++|+|||+|++.+++ .....| +-++++.--|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEIR--- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEIR--- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHhc---
Confidence 567899999999999999654332344568999999999999999999998 455555 334444444443331
Q ss_pred HHHhhccc-CCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH----hhHhhhccCCCCCC-------------CCcEE
Q 037340 265 LRSIADDQ-IKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY----ENWSILSRPFGVGA-------------PGSKI 326 (1276)
Q Consensus 265 ~~~l~~~~-~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~----~~~~~~~~~l~~~~-------------~gs~i 326 (1276)
+.. ..-..-...+.+.+++. +.++=+++||.++-... +.-.++...+.+.. .=|.|
T Consensus 394 -----GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 -----GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred -----cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 110 00111122333333332 45677899998833110 11122222221111 11344
Q ss_pred -EEEecch-h-hhhh-cCCCCceecCCCChhhHHHhhhhcc
Q 037340 327 -VVTTRNL-G-VAES-MGVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 327 -lvTtr~~-~-v~~~-~~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.|||-+. + +... +.-..++++.+-+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4555441 1 2221 2234678888888888777766654
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.046 Score=60.28 Aligned_cols=177 Identities=12% Similarity=0.032 Sum_probs=99.8
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-------cccEEEEEEcCCCCHHHHHHHHHH
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-------FQIKAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
..+.+.+.+..+ .-...+-++|+.|+||+++|+.++...--... .....++..+..+|...+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 345555555332 23457889999999999999988762100000 000000111111111000
Q ss_pred HhhcccCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhcC
Q 037340 267 SIADDQIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESMG 340 (1276)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~~ 340 (1276)
..........++++.+ +.+.+ .+++=++|+|++..........+...+.....++.+|.+|.+. .+...+.
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001123334332 22222 3455688999997777777888888777666677777776653 3433332
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
--+.+.+.+++.+++.+.+.+.. . . .+..+++.++|.|+.+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~---~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG---I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC---C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 33578999999999998886531 0 0 1346788999999876544
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.011 Score=66.33 Aligned_cols=163 Identities=9% Similarity=0.030 Sum_probs=89.8
Q ss_pred eec-chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHH
Q 037340 188 VYG-REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 188 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
++| -+..++.+...+..+ .-.....++|+.|+||||+|+.+.+..--....... ..+.-...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 456 666777777777433 234567899999999999999887631100000000 0000000000000
Q ss_pred Hhh-----cccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhh
Q 037340 267 SIA-----DDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVA 336 (1276)
Q Consensus 267 ~l~-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~ 336 (1276)
.-. ..........+++.+.+... ..+.+=++|+|++...+......+...+.....++.+|++|.+. .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 000 00000112233333333221 23455679999997666666777877777666677777777653 333
Q ss_pred hhcC-CCCceecCCCChhhHHHhhhhc
Q 037340 337 ESMG-VDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 337 ~~~~-~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
..+. -...+++.+++.++..+.+.+.
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3222 3467999999999998888653
No 185
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.023 Score=62.72 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDF 369 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 369 (1276)
+++-++|+|++...+...-..+...+.....++.+|++|.+ ..+...+. --..+.+.+++.+++.+.+.+.. .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 56679999999766666666777766655567777777765 33333322 23568899999999988887531 1
Q ss_pred CCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 370 NMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
. ...+..++..++|.|+....+.
T Consensus 187 -~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2336678999999998665443
No 186
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.00094 Score=65.19 Aligned_cols=101 Identities=23% Similarity=0.241 Sum_probs=72.2
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCCcccccchhhh-ccccccEEecCCccchhhhc--cccCCccccceeec
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSIN-SLYNLYTILLEDCYWLKKLC--QDMGNLTKLHHLIN 675 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l 675 (1276)
....+||++|++..++ .|..+..|.+|.|.+|+|+.+-+.+. -+++|++|.|.+| .+..+- ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 4567888888887775 57788889999999999988855554 4567999999888 555543 23667888888888
Q ss_pred ccccccccCcc----ccCCccccccCCceEe
Q 037340 676 FNVLSLKEMPK----GFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 676 ~~~~~l~~lp~----~i~~L~~L~~L~~~~~ 702 (1276)
-+|. +..-+. -+.++++|++|+...+
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 8876 443321 2566777777765544
No 187
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.91 E-value=0.0014 Score=68.15 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=28.9
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV 251 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 251 (1276)
-++|+|..|.||||++..+.. .....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 578999999999999999987 46678877776644
No 188
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.90 E-value=0.01 Score=71.12 Aligned_cols=179 Identities=13% Similarity=0.085 Sum_probs=93.7
Q ss_pred CCeeecchhhHHHHHHHHhcCCC------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
-.+++|.++.++++.+++..-.. .+....+-+.++|++|+|||++|+.++.. .... ++.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~~---- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISGS---- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccHH----
Confidence 34788988877766654431100 01233456889999999999999999873 2222 2222211
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC----------HhhHh----hhccCCC--CCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN----------YENWS----ILSRPFG--VGAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~~----~~~~~l~--~~~~ 322 (1276)
++. .... ......+.+.+.......+.+|++||+..-. ...+. .+...+. ....
T Consensus 123 ~~~----~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFV----EMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 1110 1112233344444445667899999993310 01111 1222221 1223
Q ss_pred CcEEEEEecchhhh-hhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 323 GSKIVVTTRNLGVA-ESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 323 gs~ilvTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
+-.||.||..++.. ..+ .-+..+.+...+.++-.++|..+...... ... .....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCC
Confidence 44566667654321 111 23457888888888888888876543211 111 2234677777774
No 189
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.011 Score=63.28 Aligned_cols=188 Identities=15% Similarity=0.134 Sum_probs=104.4
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++=|-++++++|.+...-.-. -+=..++-|.++|++|.|||-||++|++ +....| +.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH----
Confidence 3556889999998887632110 0224567789999999999999999999 455445 333221
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc-CCcceEeecCCCcc-----------C---HhhHhhhccCCCCCC--
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS-GKKILLVLDDVWNE-----------N---YENWSILSRPFGVGA-- 321 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~-----------~---~~~~~~~~~~l~~~~-- 321 (1276)
++++..-+... .+...+.+.-+ ..+..|.+|.++.- + +...-++...+..+.
T Consensus 220 ----ElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ----ELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23333322211 23333333333 45788888887321 1 122333344443332
Q ss_pred CCcEEEEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh----HH
Q 037340 322 PGSKIVVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP----LA 392 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----La 392 (1276)
..-|||..|...++.+.. .-++.+++..-+.+.-.++|+-|+..-. ....-+++. +++.+.|.- -|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e~----la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLEL----LARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHHH----HHHhcCCCchHHHHH
Confidence 356899888765554321 2456788885555555677776654322 122333444 555666553 35
Q ss_pred HHHHHHHh
Q 037340 393 AKTLGGLL 400 (1276)
Q Consensus 393 i~~~~~~l 400 (1276)
+.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 55666664
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.024 Score=63.59 Aligned_cols=149 Identities=17% Similarity=0.249 Sum_probs=87.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
.+...+.+.|++|+|||+||..++. ...|+.+--++..+-.... +......+........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s----------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS----------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc----------------HHHHHHHHHHHHHHhh
Confidence 4566778899999999999999986 3457655444322111111 1111122333444555
Q ss_pred cCCcceEeecCCCccCHhhHhhhccC---------------CCCCCCCcEEEEEecchhhhhhcCC----CCceecCCCC
Q 037340 291 SGKKILLVLDDVWNENYENWSILSRP---------------FGVGAPGSKIVVTTRNLGVAESMGV----DPAYQLKELS 351 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~~~~~~~~~---------------l~~~~~gs~ilvTtr~~~v~~~~~~----~~~~~l~~L~ 351 (1276)
+++--.||+||+ +..-+|-.+... .|+.++.--|+-||....+...|+. ...|.++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 677789999999 434445443322 2222223335557777888888763 3578899988
Q ss_pred h-hhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHc
Q 037340 352 N-DDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKC 386 (1276)
Q Consensus 352 ~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 386 (1276)
. ++..+.+...-. -.+.+.+.++++...+|
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc
Confidence 7 777777765421 12234455666666655
No 191
>PRK08118 topology modulation protein; Reviewed
Probab=96.85 E-value=0.0005 Score=68.61 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=27.0
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhh-cccccEEE
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKAW 248 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 248 (1276)
-|.|+|++|+||||+|+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999854333 45676776
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.84 E-value=0.0016 Score=63.56 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcceE
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKL 1176 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 1176 (1276)
.....+|+++|. +..+ ..|..++.|.+|.+.+|. ++.+.+. .+.++|+.|.+.+|.+.....-..+..||+|++|
T Consensus 42 d~~d~iDLtdNd-l~~l-~~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKL-DNLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccc-hhhc-ccCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 366778888883 3333 256678888888888887 6666544 5677888899988887654443347788888888
Q ss_pred EecCCCCCCccC-----CCCCCCcCeeeccC
Q 037340 1177 KISGGFPDLVSS-----PRFPASLTELKISD 1202 (1276)
Q Consensus 1177 ~Ls~~~~~~~~~-----~~~~~~L~~L~l~~ 1202 (1276)
.+-+|-..-... ..-+++|++||...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888752221111 11345666666544
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.80 E-value=0.0088 Score=68.85 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=73.5
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCc
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKK 294 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr 294 (1276)
++.|.|+-++||||+++.+... ..+. .+++...+......-+.+.... +...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~------------------~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRA------------------YIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHH------------------HHHhhccCC
Confidence 9999999999999999776652 2222 4444443222111111111111 111111277
Q ss_pred ceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhh-----hc-CCCCceecCCCChhhHHHhhh
Q 037340 295 ILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAE-----SM-GVDPAYQLKELSNDDCLCVLT 360 (1276)
Q Consensus 295 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~-----~~-~~~~~~~l~~L~~~~~~~l~~ 360 (1276)
..|+||.|. ....|......+.+.+.. +|++|+-+..... .. +-...+.+.||+-.|...+-.
T Consensus 96 ~yifLDEIq--~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 96 SYIFLDEIQ--NVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred ceEEEeccc--CchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 899999994 467898888777766555 8888887644322 22 224568899999988766543
No 194
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.77 E-value=0.0048 Score=70.59 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++||++.++.+...+..+. .|.|.|++|+|||++|+.+..
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 47899999999999886543 478999999999999999987
No 195
>PRK08181 transposase; Validated
Probab=96.77 E-value=0.0034 Score=67.45 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=53.4
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
.-+.++|++|+|||.||..+.+ ........++|+++ .+++..+..... ....... +.. + .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~---l~~-l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARR------ELQLESA---IAK-L-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHH---HHH-H-hc
Confidence 4589999999999999999987 33333334555543 344444433211 1122222 222 2 23
Q ss_pred cceEeecCCCccCHhhH--hhhccCCCCCCCCcEEEEEecc
Q 037340 294 KILLVLDDVWNENYENW--SILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 294 r~LlvlDdv~~~~~~~~--~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
-=|||+||+.......| ..+...+.....+..+||||..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 45999999954322222 2233322211112358888875
No 196
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.75 E-value=0.0035 Score=69.06 Aligned_cols=122 Identities=17% Similarity=0.205 Sum_probs=69.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhh
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIA 269 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1276)
+|....+...+++.... .....+-+.|+|..|+|||.||..+++. ....-..+.+++++ +++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHh
Confidence 45555555666664322 1123567999999999999999999984 33332345566553 44455544432
Q ss_pred cccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhh--hccCC-CCC-CCCcEEEEEecc
Q 037340 270 DDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSI--LSRPF-GVG-APGSKIVVTTRN 332 (1276)
Q Consensus 270 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~--~~~~l-~~~-~~gs~ilvTtr~ 332 (1276)
.. .. .+.+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||--
T Consensus 205 ~~------~~---~~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SV---KEKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cH---HHHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 11 222222 2 235599999997665566643 43333 221 234568888863
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.039 Score=61.05 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---cc-----EEEEEEcCCCCHHHHHHHHHH
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QI-----KAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
-+.+...+..+ .-..-+.++|+.|+||+++|+.++...--.... .| ..++..+..+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 34556665332 224567789999999999999988631110000 00 001111111111100
Q ss_pred HhhcccCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhcC
Q 037340 267 SIADDQIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESMG 340 (1276)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~~ 340 (1276)
. +.......+++..+. .+.+ .+++=++|+|++..........+...+.....++.+|++|.+. .+...+.
T Consensus 80 --~-p~~~~~I~id~iR~l-~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 --E-PIDNKDIGVDQVREI-NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred --c-cccCCCCCHHHHHHH-HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 0 000011233443332 2222 3566688899997777777888888777666777777777663 4433322
Q ss_pred -CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 341 -VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 341 -~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
--+.+.+.+++.++..+.+.+.... . ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~------~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA------E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc------C---hHHHHHHHHHcCCCHHHH
Confidence 2367899999999999888765311 0 123556778899999633
No 198
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.73 E-value=0.012 Score=58.42 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh------------------cccccEEEEEE
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ------------------RHFQIKAWTCV 251 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~f~~~~wv~~ 251 (1276)
|-++..+.+...+... .-...+.++|+.|+||+++|..+++..--. .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4556677777777543 234578999999999999999888631111 11222333322
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEE
Q 037340 252 SEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKI 326 (1276)
Q Consensus 252 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~i 326 (1276)
.... .....++.. .+.+.+ .+++=++|+||+.....+.+..+...+.....++++
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2110 012333333 222222 235568999999877778888888888776678999
Q ss_pred EEEecchh
Q 037340 327 VVTTRNLG 334 (1276)
Q Consensus 327 lvTtr~~~ 334 (1276)
|++|++..
T Consensus 136 iL~t~~~~ 143 (162)
T PF13177_consen 136 ILITNNPS 143 (162)
T ss_dssp EEEES-GG
T ss_pred EEEECChH
Confidence 99888743
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.71 E-value=0.017 Score=62.81 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHH
Q 037340 193 KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1276)
+-++++..++.. .+.|.+.|++|+|||++|+.+++ .... ..+++++....+..++
T Consensus 9 ~l~~~~l~~l~~--------g~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKS--------GYPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhc--------CCeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 344555555532 23567999999999999999986 2222 2345555555544444
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.65 E-value=0.0014 Score=80.20 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=45.9
Q ss_pred cccceeeccCCccc--ccchhhh-ccccccEEecCCccch-hhhccccCCccccceeecccccccccCccccCCcccccc
Q 037340 621 KHLRFLNLSGTSIQ--FLPDSIN-SLYNLYTILLEDCYWL-KKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLT 696 (1276)
Q Consensus 621 ~~Lr~L~L~~~~i~--~lp~~i~-~L~~L~~L~l~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 696 (1276)
.+|++||+++...- .=|..++ -|+.|++|.+++-... ..+-.-..+++||+.||+++++ +..+ .++++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 45666666664221 1123333 4667777777653111 1122234567777777777776 6666 57777777777
Q ss_pred CCceEec
Q 037340 697 LRRFVVG 703 (1276)
Q Consensus 697 L~~~~~~ 703 (1276)
|.+....
T Consensus 200 L~mrnLe 206 (699)
T KOG3665|consen 200 LSMRNLE 206 (699)
T ss_pred HhccCCC
Confidence 7554443
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.64 E-value=0.007 Score=64.02 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=56.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
...+.++|.+|+|||+||..+++. ....-..+++++ ..++...+-..... .....+ .+.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~----~~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSN----SETSEE----QLLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHH----HHHHHhc-
Confidence 457899999999999999999984 333333455553 34444444333321 111111 2233344
Q ss_pred CcceEeecCCCccCHhhHhh--hccCCCCC-CCCcEEEEEecc
Q 037340 293 KKILLVLDDVWNENYENWSI--LSRPFGVG-APGSKIVVTTRN 332 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtr~ 332 (1276)
+.=+||+||+......+|+. +...+... ...-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34588999996654445543 22222211 123357777763
No 202
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0084 Score=63.81 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 260 (1276)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 34679999999999999999999873 33345678899887 5555443
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.59 E-value=0.0025 Score=70.20 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=42.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+++|.++.++++++++.......+...+++.++|++|+||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654322345689999999999999999999874
No 204
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.014 Score=59.21 Aligned_cols=158 Identities=17% Similarity=0.192 Sum_probs=86.8
Q ss_pred CeeecchhhHH---HHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKE---AIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
+++||.++.+. -|.++|...+.=++..++-|..+|++|.|||.+|+++++. .+..| +.+. ...
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane--~kvp~-----l~vk-------at~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE--AKVPL-----LLVK-------ATE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc--cCCce-----EEec-------hHH
Confidence 46889887665 3556665543324556788999999999999999999994 33222 1111 111
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC------------HhhHhhhccCCC--CCCCCcEEEE
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN------------YENWSILSRPFG--VGAPGSKIVV 328 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~~~~~~~~~~l~--~~~~gs~ilv 328 (1276)
-|-+..+ +...++.+...+.-+.-++.+.+|.++... .+....+...+. ..+.|-..|-
T Consensus 187 liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 LIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1111111 111222222222334567888888873211 111222322232 1335666666
Q ss_pred Eecchhhhhhc---CCCCceecCCCChhhHHHhhhhccc
Q 037340 329 TTRNLGVAESM---GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 329 Ttr~~~v~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
.|..++..+.. .-...|+..--+++|-.+++...+.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k 298 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAK 298 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHH
Confidence 66665443321 1234566666778888888887763
No 205
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.54 E-value=0.066 Score=60.04 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=119.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHH-HHHhcchhhhcccccEEEEEEcC---CCCHHHHHHHHHH
Q 037340 191 REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLA-QLVYNDDRVQRHFQIKAWTCVSE---DFDVSRVTKSILR 266 (1276)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~ 266 (1276)
|.+..++|..||.+. .-..|.|.|+-|.||+.|+ .++..+.+. +..+.+.+ .-+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~------~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN------PNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcC------CCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 667889999999654 3469999999999999999 777764222 44444321 1223344444444
Q ss_pred Hhh-----------------------cccCCCCCcH-HHHHHH-------HHH-------------------Hh---cCC
Q 037340 267 SIA-----------------------DDQIKDDDDL-NSLQVK-------LKK-------------------QL---SGK 293 (1276)
Q Consensus 267 ~l~-----------------------~~~~~~~~~~-~~~~~~-------l~~-------------------~l---~~k 293 (1276)
+++ +....-.... .++... |++ ++ ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 432 1111001111 111111 111 11 123
Q ss_pred cceEeecCCCccC---------HhhHhhhccCCCCCCCCcEEEEEecchhhhhhcC------CCCceecCCCChhhHHHh
Q 037340 294 KILLVLDDVWNEN---------YENWSILSRPFGVGAPGSKIVVTTRNLGVAESMG------VDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 294 r~LlvlDdv~~~~---------~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~------~~~~~~l~~L~~~~~~~l 358 (1276)
|=+||+|+.-... ..+|...... ..=.+||++|-+......+. ..+.+.+...+.+.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999984421 2344443221 23458999998865544332 346788999999999999
Q ss_pred hhhcccCCCCC------------CCC----cchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChh
Q 037340 359 LTQISLGARDF------------NMH----QSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPR 407 (1276)
Q Consensus 359 ~~~~~~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 407 (1276)
...+....... ... ....+.....++.+||==.-+..+++.++...+++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 98876543110 000 12344556678899999999999999998876543
No 206
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.072 Score=59.65 Aligned_cols=178 Identities=13% Similarity=0.035 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---cc-----EEEEEEcCCCCHHHHHHHHHH
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QI-----KAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
-+++...+..+ .-..-+-+.|+.|+||+++|..++..---...- .| ..++..+..+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 45566666432 234567799999999999999887621000000 00 001111111221111
Q ss_pred HhhcccCCCCCcHHHHHHHHHHHh----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhc-C
Q 037340 267 SIADDQIKDDDDLNSLQVKLKKQL----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESM-G 340 (1276)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~-~ 340 (1276)
..........+++..+.....- .+++=++|+|++..........+...+.....++.+|.+|.+. .+...+ +
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 0000001123444443222211 3667799999997777777778887776666677777777663 344332 2
Q ss_pred CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 341 VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 341 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
--+.+.+.+++.+++.+.+.+... . + .+.+..++..++|.|....
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~--~----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT--M----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC--C----C---HHHHHHHHHHcCCCHHHHH
Confidence 235789999999999888865321 1 1 2346678899999996443
No 207
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.52 E-value=0.0026 Score=64.08 Aligned_cols=100 Identities=23% Similarity=0.279 Sum_probs=50.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
..-+.++|..|+|||.||..+.+. ...+=..+.|+.+ .+++.. +..... ...... .+.+ +.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~----l~~~~~--~~~~~~---~~~~-l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDE----LKQSRS--DGSYEE---LLKR-LK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHH----HHCCHC--CTTHCH---HHHH-HH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceecc----cccccc--ccchhh---hcCc-cc-
Confidence 356899999999999999999873 2222234556643 333333 332211 112222 2222 22
Q ss_pred CcceEeecCCCccCHhhHhh--hccCCCCC-CCCcEEEEEecc
Q 037340 293 KKILLVLDDVWNENYENWSI--LSRPFGVG-APGSKIVVTTRN 332 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~--~~~~l~~~-~~gs~ilvTtr~ 332 (1276)
+-=||||||+......+|.. +...+... ..+ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23588899996654444432 21111111 123 57888874
No 208
>PRK06526 transposase; Provisional
Probab=96.46 E-value=0.0047 Score=66.06 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.+-+.|+|++|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 346899999999999999999873
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=96.45 E-value=0.0066 Score=65.47 Aligned_cols=23 Identities=39% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+.|+|++|+|||+||..+.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34678999999999999999976
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.45 E-value=0.018 Score=58.58 Aligned_cols=131 Identities=19% Similarity=0.273 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC----CC-----CHHH-
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE----DF-----DVSR- 259 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~----~~-----~~~~- 259 (1276)
.+..+.....+.|.. ..++.+.|++|.|||.||.+.+-+.-..+.|+..+++.-.- .. +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666777777753 36899999999999999988887554457788777764211 11 1110
Q ss_pred ---HHHHHHHHhhcccCCCCCcHHHHHHHH------HHHhcCC---cceEeecCCCccCHhhHhhhccCCCCCCCCcEEE
Q 037340 260 ---VTKSILRSIADDQIKDDDDLNSLQVKL------KKQLSGK---KILLVLDDVWNENYENWSILSRPFGVGAPGSKIV 327 (1276)
Q Consensus 260 ---~~~~i~~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~il 327 (1276)
...-+.+.+..-. .....+.+.+.= -.+++|+ ...||+|++.+....++..+.... +.|||+|
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEE
Confidence 0111111111110 111222221100 1223443 359999999887777777776554 5789999
Q ss_pred EEecch
Q 037340 328 VTTRNL 333 (1276)
Q Consensus 328 vTtr~~ 333 (1276)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 987643
No 211
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.025 Score=62.83 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=49.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC--HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD--VSRVTKSILRSIADDQIKDDDDLNSLQVKLKK 288 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 288 (1276)
...++|+++|++|+||||++..++.. ....=..+..+... .+. ..+-++...+.++.+.. ...+...+.+.+..
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHH
Confidence 34589999999999999999999863 32221234444443 232 22223333333333221 23345555555544
Q ss_pred HhcC-CcceEeecCCCc
Q 037340 289 QLSG-KKILLVLDDVWN 304 (1276)
Q Consensus 289 ~l~~-kr~LlvlDdv~~ 304 (1276)
.-.. +.=+|++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 4322 234778887643
No 212
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.014 Score=64.62 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-cccc-EEEEEEcCC-CCHHHHHHHHHHHhhc
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-HFQI-KAWTCVSED-FDVSRVTKSILRSIAD 270 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~ 270 (1276)
...++++.+..- +...-+.|+|.+|+|||||++++++. +.. +-+. .+|+.+.+. ..+.++.+.+...+..
T Consensus 119 ~~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 334577777542 23345699999999999999998873 333 2233 367677654 4677888888877665
Q ss_pred ccCCCCCcH----HHHHHHHHHHh--cCCcceEeecCC
Q 037340 271 DQIKDDDDL----NSLQVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 271 ~~~~~~~~~----~~~~~~l~~~l--~~kr~LlvlDdv 302 (1276)
......... ......+.+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 432111111 11111122222 589999999999
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.39 E-value=0.0094 Score=62.66 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
....++.|+|.+|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 44679999999999999999998873 333456789998876 66555443
No 214
>PRK06921 hypothetical protein; Provisional
Probab=96.36 E-value=0.0085 Score=64.79 Aligned_cols=38 Identities=24% Similarity=0.169 Sum_probs=28.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcc-cccEEEEEE
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKAWTCV 251 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~ 251 (1276)
....+.++|..|+|||+||..+++. +... -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 3567899999999999999999983 3333 345566654
No 215
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.36 E-value=0.014 Score=74.72 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=76.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+... ....-...+.++.+.-.+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 46899999999999998653210 1122356889999999999999999872 211112233344433222111
Q ss_pred HHHHHhhcccCC--CCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCC-----------CCcEEEEE
Q 037340 263 SILRSIADDQIK--DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGA-----------PGSKIVVT 329 (1276)
Q Consensus 263 ~i~~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvT 329 (1276)
...+.+.... .......+...+++ ....+|+||++...+.+.+..+...+..+. ..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1111111110 11111223333222 234589999997777777877776664331 23446777
Q ss_pred ecc
Q 037340 330 TRN 332 (1276)
Q Consensus 330 tr~ 332 (1276)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 763
No 216
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.36 E-value=0.00024 Score=86.38 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=18.6
Q ss_pred CCCccEEEEccCCcccc----cccccCCCccEEEEcc
Q 037340 931 LPVLSELHIDGCRRVVF----SSLINFSSLKSIFLRD 963 (1276)
Q Consensus 931 l~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~ 963 (1276)
++.|+.|.+.+|..... .....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 56666666666653331 2234456666666665
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.34 E-value=0.012 Score=74.60 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=75.0
Q ss_pred CCeeecchhhHHHHHHHHhcCCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
...++|-+..++.+.+.+..... .......++.++|+.|+|||.+|+.++.. .-......+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 35789999999999998854211 01223447899999999999999988762 2111111122222211100
Q ss_pred HHHHHHhhcccCC-CCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCC-----------CCcEEEEE
Q 037340 262 KSILRSIADDQIK-DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGA-----------PGSKIVVT 329 (1276)
Q Consensus 262 ~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~ilvT 329 (1276)
..+..-++.+... .......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1111111211110 11111223333332 455699999996666666777766555432 34556666
Q ss_pred ecc
Q 037340 330 TRN 332 (1276)
Q Consensus 330 tr~ 332 (1276)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 218
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00092 Score=68.92 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCCccEEEEccCCcccc----cccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCC
Q 037340 931 LPVLSELHIDGCRRVVF----SSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDI 1006 (1276)
Q Consensus 931 l~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 1006 (1276)
.+.+++++|.+|..... .-+.++|.|+.|+++.|+-...+ +..|....+|+.|.+. +....|.-....+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLN---gT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLN---GTGLSWTQSTSSLDDL 145 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEc---CCCCChhhhhhhhhcc
Confidence 45567777777763332 23456777777777777622111 1111222334444332 2222233334445667
Q ss_pred CCcceEEEecC
Q 037340 1007 SSLNQLQISGC 1017 (1276)
Q Consensus 1007 ~~L~~L~ls~c 1017 (1276)
|.++.|++|.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 77777777765
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.34 E-value=0.015 Score=73.90 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
...++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+++. ....-...+.+..+.-.. .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~--- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-K--- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-h---
Confidence 346899999999999888643210 1122347889999999999999999862 211112233444432211 1
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHhc-CCcceEeecCCCccCHhhHhhhccCCC
Q 037340 262 KSILRSIADDQIKDDDDLNSLQVKLKKQLS-GKKILLVLDDVWNENYENWSILSRPFG 318 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~~~~~~~~~~~l~ 318 (1276)
.....+.+..+ .....+. ...+...++ ...-+|+|||+...+.+.+..+...+.
T Consensus 641 -~~~~~LiG~~p-gy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 -HSVSRLVGAPP-GYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred -hhHHHHhCCCC-cccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 11222222211 1111111 111223332 233599999997666777777766554
No 220
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.33 E-value=0.0089 Score=64.25 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=36.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 260 (1276)
....++.|+|.+|+|||++|.+++........ -..++|++....++..++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 34679999999999999999999753222221 357899998887775544
No 221
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.32 E-value=0.019 Score=65.34 Aligned_cols=142 Identities=11% Similarity=0.097 Sum_probs=82.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-------------------ccccEE
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQIKA 247 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 247 (1276)
+++|-+....++..+..... ....-+-++|++|+||||+|..+++...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 45677788888888886432 1233489999999999999999987321000 112333
Q ss_pred EEEEcCCCC---HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCc
Q 037340 248 WTCVSEDFD---VSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGS 324 (1276)
Q Consensus 248 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs 324 (1276)
.+..+.... ..+..+++.+....... .++.-++++|++.....+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444443332 22233333332222110 3567799999997766666666666666556777
Q ss_pred EEEEEecch-hhhhhcC-CCCceecCC
Q 037340 325 KIVVTTRNL-GVAESMG-VDPAYQLKE 349 (1276)
Q Consensus 325 ~ilvTtr~~-~v~~~~~-~~~~~~l~~ 349 (1276)
.+|++|.+. .+...+. -...+++.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 888888742 3322221 123455655
No 222
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.28 E-value=0.086 Score=59.96 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 192 EKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+.-.+.+.+.+...+ .....+|+|.|.-|+||||+.+++.+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445667777776542 256789999999999999999999873
No 223
>PRK12377 putative replication protein; Provisional
Probab=96.27 E-value=0.013 Score=62.06 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=55.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
...+.++|.+|+|||+||..+++ ........++++++. +++..+-..... ..... + +.+.+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~---~-~l~~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGE---K-FLQEL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHH---H-HHHHh-c
Confidence 35789999999999999999998 344444456666553 344444333211 11111 1 22222 3
Q ss_pred CcceEeecCCCccCHhhHh--hhccCCCCC-CCCcEEEEEecc
Q 037340 293 KKILLVLDDVWNENYENWS--ILSRPFGVG-APGSKIVVTTRN 332 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~--~~~~~l~~~-~~gs~ilvTtr~ 332 (1276)
+-=|||+||+.......|. .+...+... ...--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4569999999443323332 233322211 122346777763
No 224
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.014 Score=67.80 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
+++||-+.-.+.|...+.... -..--...|+-|+||||+|+-++...-... | ...++.+.-...++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhh
Confidence 357999999999999996542 233456789999999999998886311110 1 1111222222222222
Q ss_pred HH-----hhcccCCCCCcHHHHHHHHHHHh----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhh
Q 037340 266 RS-----IADDQIKDDDDLNSLQVKLKKQL----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGV 335 (1276)
Q Consensus 266 ~~-----l~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v 335 (1276)
.- +..+.. ....+++..+.+.+.. ++|.=+.|+|+|.-.....|..+..-+...-..-+.|..|.+ ..+
T Consensus 84 ~g~~~DviEiDaA-Sn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 84 EGSLIDVIEIDAA-SNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCcccchhhhhh-hccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 21 000000 1122233322222221 344458999999776777888887777654445555555554 444
Q ss_pred hhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 336 AESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 336 ~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
...+ .-.+.|.++.++.++-...+...+....- ....+....|++..+|..
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSL 214 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCCh
Confidence 3332 33468999999999988888877654332 222455566777777744
No 225
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.24 E-value=0.025 Score=57.97 Aligned_cols=88 Identities=18% Similarity=0.133 Sum_probs=51.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcccC--CCC-CcHHHHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQI--KDD-DDLNSLQVKLKK 288 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~--~~~-~~~~~~~~~l~~ 288 (1276)
++||.++|+.|+||||.+-.++.. .+.+-..+..++... .....+-++..++.++.+.. ... +..+...+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 478999999999999988888763 333333456666542 23455667777888776532 112 233333344444
Q ss_pred HhcCCcceEeecCC
Q 037340 289 QLSGKKILLVLDDV 302 (1276)
Q Consensus 289 ~l~~kr~LlvlDdv 302 (1276)
.-..+.=+|++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33333447778865
No 226
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.22 E-value=0.088 Score=58.75 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDF 369 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 369 (1276)
+++-++|+|++.......+..+...+....+++.+|.+|.+ ..+...+ +-.+.+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 45568899999887778888888888766677777666655 3443332 223678999999999998887641 1
Q ss_pred CCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 370 NMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 370 ~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
++ ...++..++|.|..+..+
T Consensus 206 ---~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 123567889999755433
No 227
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.21 E-value=0.16 Score=59.66 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=85.8
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchh---hhcccc--cEEEEEEcCCCCHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDR---VQRHFQ--IKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~f~--~~~wv~~~~~~~~~~~~ 261 (1276)
.+-+|+.|..+|-+.+...-. .++....+.|.|-+|+|||..+..|.+.-. .++.-. ..+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 466999999999998865432 124456999999999999999999987422 111122 23344445556789999
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHhc-----CCcceEeecCCC---ccCHhhHhhhccCCCC-CCCCcEEEEEe
Q 037340 262 KSILRSIADDQIKDDDDLNSLQVKLKKQLS-----GKKILLVLDDVW---NENYENWSILSRPFGV-GAPGSKIVVTT 330 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlvlDdv~---~~~~~~~~~~~~~l~~-~~~gs~ilvTt 330 (1276)
..|..++.+... ......+.+..+.. .+..++++|+++ ...++. +...|.| ..++||++|.+
T Consensus 476 ~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdV---lYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 476 EKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDV---LYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHH---HHHHhcCCcCCCCceEEEE
Confidence 999999987653 23333344444442 356788888872 222222 2333333 34677776654
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.21 E-value=0.0082 Score=61.52 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=62.9
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC-CCCcHHHHHHHHHHHhcC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK-DDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 292 (1276)
.++.|+|..|.||||+|..++. +...+-..++.+. ..++.+.....++.+++..... .....+++...+++ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4788999999999999998887 3433333333331 1222222233445555432210 12233444444544 334
Q ss_pred CcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhh
Q 037340 293 KKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGV 335 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v 335 (1276)
+.-+||+|.+.--+.++..++...+. ..|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 45589999984432232333333322 357889999997443
No 229
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.15 E-value=0.023 Score=66.71 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=81.9
Q ss_pred CeeecchhhHHHHHHHHhc---C-CCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLR---D-DLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~---~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
.++.|.+..++.+.+.... . ...+-...+-|.++|++|+|||.+|+.+++. ....| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------
Confidence 4577877766665543211 0 0001134567899999999999999999883 22222 1111111
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH--------h----hHhhhccCCCCCCCCcEEEEE
Q 037340 262 KSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY--------E----NWSILSRPFGVGAPGSKIVVT 329 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------~----~~~~~~~~l~~~~~gs~ilvT 329 (1276)
+.... .......+.+.+...-...+++|++|++..-.. . ....+...+.....+--||.|
T Consensus 295 --l~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hcccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11000 111122233333333345789999999842100 0 011112222222334446667
Q ss_pred ecchhh-hhhc----CCCCceecCCCChhhHHHhhhhcccC
Q 037340 330 TRNLGV-AESM----GVDPAYQLKELSNDDCLCVLTQISLG 365 (1276)
Q Consensus 330 tr~~~v-~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~ 365 (1276)
|.+.+. ...+ .-+..+.++..+.++-.++|..+...
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 765432 2111 23467888888888888888877643
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.15 E-value=0.003 Score=61.39 Aligned_cols=87 Identities=24% Similarity=0.143 Sum_probs=45.7
Q ss_pred EEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcc
Q 037340 216 ISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKI 295 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~ 295 (1276)
|.++|++|+|||+||+.+++ .... ...-+.++...+..++....--+ ... .......+...++ +..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~---~~~~~~~l~~a~~-----~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ---FEFKDGPLVRAMR-----KGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTT---TCEEE-CCCTTHH-----EEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccc---ccccccccccccc-----cee
Confidence 67999999999999999997 2311 22345666666666554322111 000 0000000000011 678
Q ss_pred eEeecCCCccCHhhHhhhccC
Q 037340 296 LLVLDDVWNENYENWSILSRP 316 (1276)
Q Consensus 296 LlvlDdv~~~~~~~~~~~~~~ 316 (1276)
++|||++.....+.+..+...
T Consensus 68 il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEESSCGG--HHHHHTTHHH
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999965444545555433
No 231
>PTZ00494 tuzin-like protein; Provisional
Probab=96.14 E-value=0.79 Score=51.23 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=102.0
Q ss_pred cccCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 182 LVNEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 182 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
......+|.|++|-..+.+.|...+ ...++++++.|.-|.||++|.+.....+ =-..++|.+....| -+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~ED---tL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGTED---TL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCCcc---hH
Confidence 3456789999999988888886654 3678999999999999999998877532 23567788876544 46
Q ss_pred HHHHHHhhcccCCC-CCcHHHHHHHHHH---HhcCCcceEeec--CCCccCHhhHhhhccCCCCCCCCcEEEEEecchhh
Q 037340 262 KSILRSIADDQIKD-DDDLNSLQVKLKK---QLSGKKILLVLD--DVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGV 335 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~-~~~~~~~~~~l~~---~l~~kr~LlvlD--dv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v 335 (1276)
+.+++.++.+..+. .+-++-+.+..+. ...++.=+||+- +-.+- ...+.+.. .+.....-|+|++----+.+
T Consensus 436 rsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 436 RSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeechHhhh
Confidence 77788887765322 2233333333332 234555566653 22111 12222222 23333456788875544333
Q ss_pred hhhcC---CCCceecCCCChhhHHHhhhhc
Q 037340 336 AESMG---VDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 336 ~~~~~---~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
..... -..-|.+.+++.++|.++-.+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 22111 1234788999999998876654
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.1 Score=59.93 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=64.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.++=|.++.+.++.+++.....+ +=...+-|.++|++|.|||.||++++.. ..-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge--l~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh--cCCce-----Eeecch-----
Confidence 45678999999888887543221 1134567889999999999999999983 33223 333322
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCc
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 304 (1276)
+|+..+ .....+.+.+.+.+..+.-++++++|+++-
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 233332 233445566666666677899999999843
No 233
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.11 E-value=0.023 Score=71.46 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=69.7
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
...++|-+..++.+...+...... .+....++.++|+.|+|||++|+.++.. . +...+.++.++-.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhcc---
Confidence 346889999999998887642110 1122346789999999999999999872 2 2334555544322111
Q ss_pred HHHHHHhhcccCC-CCCcHHHHHHHHHHHhcC-CcceEeecCCCccCHhhHhhhccCCCC
Q 037340 262 KSILRSIADDQIK-DDDDLNSLQVKLKKQLSG-KKILLVLDDVWNENYENWSILSRPFGV 319 (1276)
Q Consensus 262 ~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~~~~~~~~~~l~~ 319 (1276)
.+...++..... ....... +.+.++. ..-+++||++...+.+.+..+...+..
T Consensus 525 -~~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 525 -TVSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -cHHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 111112221110 1111122 2333333 345999999977777777777766653
No 234
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.10 E-value=0.013 Score=64.21 Aligned_cols=86 Identities=22% Similarity=0.166 Sum_probs=56.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1276)
+..+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++.... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33344567898887766653 2344432210 1233455555555
Q ss_pred HHHhc-CCcceEeecCCC
Q 037340 287 KKQLS-GKKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l~-~kr~LlvlDdv~ 303 (1276)
....+ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456699999983
No 235
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.023 Score=57.41 Aligned_cols=121 Identities=22% Similarity=0.251 Sum_probs=70.0
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.-..++|.|..++.+++--..-- .+-.-.-|.+||.-|+|||+|++++.+ .+....-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH---------
Confidence 34578999999988877432110 112334578999999999999999998 34433322 3333322
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhccCCCCC---CCCcEEEEEecc
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILSRPFGVG---APGSKIVVTTRN 332 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~~~l~~~---~~gs~ilvTtr~ 332 (1276)
+..++..+.+.|+. ..+||.|..||..-+ ....+..++..+..+ .+...++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11111122222221 367999999999443 335567777766543 234455555544
No 236
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.07 E-value=0.012 Score=64.63 Aligned_cols=85 Identities=22% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1276)
+..+++-|+|++|+||||||.+++.. ....-..++||+..+.++.. .+++++.... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999998863 33445578899887777653 2333332210 1233455555555
Q ss_pred HHHhc-CCcceEeecCC
Q 037340 287 KKQLS-GKKILLVLDDV 302 (1276)
Q Consensus 287 ~~~l~-~kr~LlvlDdv 302 (1276)
....+ +.--+||+|.|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55554 45568999998
No 237
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.06 E-value=0.022 Score=72.57 Aligned_cols=138 Identities=15% Similarity=0.201 Sum_probs=75.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 261 (1276)
...++|-+..++.+...+...... .+....++.++|+.|+|||+||+.+++. .-..-...+-+..+.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-
Confidence 357899999999998888532210 1122345678999999999999999862 2111122233333332221111
Q ss_pred HHHHHHhhcccCC-CCCcHHHHHHHHHHHhcCCc-ceEeecCCCccCHhhHhhhccCCCCC-----------CCCcEEEE
Q 037340 262 KSILRSIADDQIK-DDDDLNSLQVKLKKQLSGKK-ILLVLDDVWNENYENWSILSRPFGVG-----------APGSKIVV 328 (1276)
Q Consensus 262 ~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr-~LlvlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilv 328 (1276)
..-++.+... ....... +.+.++.++ .+++||++...+.+.+..+...+..+ ...+-+|+
T Consensus 585 ---~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1111111100 1111122 333444444 58899999776777777777666543 13455666
Q ss_pred Eecc
Q 037340 329 TTRN 332 (1276)
Q Consensus 329 Ttr~ 332 (1276)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 6653
No 238
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.018 Score=69.74 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEcCCCCHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVSEDFDVS 258 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~ 258 (1276)
...++|-+..++.+.+.+...... .+....+...+|+.|||||-||++++.. -| +..+-+ |+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~------DMS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRI------DMS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceee------chH
Confidence 356899999999999988643221 2234457778999999999999999862 24 222323 232
Q ss_pred HHHH-HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcc-eEeecCCCccCHhhHhhhccCCCCC
Q 037340 259 RVTK-SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKI-LLVLDDVWNENYENWSILSRPFGVG 320 (1276)
Q Consensus 259 ~~~~-~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~~~~~~~~~~~~l~~~ 320 (1276)
+... .-+..+-+..+ .--..++ .-.|-+..+.++| +|.||++.-.+++....+...+..+
T Consensus 559 Ey~EkHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 559 EYMEKHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 2221 12233333322 1111112 1234445566777 8888999776777777777777654
No 239
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.03 E-value=0.023 Score=71.82 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=91.8
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.+..++++.+++...-. -+-...+.|.++|++|+|||++|+.+++. ....| +.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 4588999999999887642100 01123467889999999999999999873 32222 222211
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCCCC-CCCcEE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFGVG-APGSKI 326 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~~~-~~gs~i 326 (1276)
++ .... .......+...+.........+|++||+.... ......+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1100 11112223333444445567899999983310 01112232222211 123344
Q ss_pred EE-Eecchh-hhhhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 327 VV-TTRNLG-VAESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 327 lv-Ttr~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
+| ||.... +...+ .-...+.+...+.++-.+++..+.....- ... .....+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCC
Confidence 44 454332 21111 12345777777888888888754322110 111 22455777777764
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.02 E-value=0.039 Score=58.81 Aligned_cols=90 Identities=18% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhccc------ccEEEEEEcCCCCHHHHHHHHHHHhhcccC--------CCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF------QIKAWTCVSEDFDVSRVTKSILRSIADDQI--------KDD 276 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~ 276 (1276)
....++.|+|.+|+|||++|.+++.. ..... ..++|+.....++...+. .+.+....... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 45679999999999999999998763 22222 467899888777765543 33333221100 022
Q ss_pred CcHHHHHHHHHHHhc----CCcceEeecCCC
Q 037340 277 DDLNSLQVKLKKQLS----GKKILLVLDDVW 303 (1276)
Q Consensus 277 ~~~~~~~~~l~~~l~----~kr~LlvlDdv~ 303 (1276)
.+.+++...+.+..+ .+.-++|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 345555555555443 344589999983
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.01 E-value=0.0048 Score=58.19 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|.|.|++|+||||+|+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.00 E-value=0.0058 Score=67.85 Aligned_cols=102 Identities=18% Similarity=0.213 Sum_probs=53.4
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
..+.++|..|+|||.||..+++. ....-..++++++. +++..+...-.. ...+.. ..+ +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~----~~~~~~---~~~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN----NDKELE---EVY-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc----cchhHH---HHH-HHhc-c
Confidence 66899999999999999999984 33333345666543 233333221110 111111 112 2222 2
Q ss_pred cceEeecCCCccCHhhH--hhhccCCCCC-CCCcEEEEEecc
Q 037340 294 KILLVLDDVWNENYENW--SILSRPFGVG-APGSKIVVTTRN 332 (1276)
Q Consensus 294 r~LlvlDdv~~~~~~~~--~~~~~~l~~~-~~gs~ilvTtr~ 332 (1276)
-=|||+||+..+....| ..+...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 24899999955433333 2233222211 134568888874
No 243
>PRK07261 topology modulation protein; Provisional
Probab=95.99 E-value=0.011 Score=59.49 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=39.8
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhh-cccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
.|.|+|++|+||||||+++.....+. -+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999998632211 133445552111 1122344555566666665
Q ss_pred cceEeecCCCc
Q 037340 294 KILLVLDDVWN 304 (1276)
Q Consensus 294 r~LlvlDdv~~ 304 (1276)
+ .|+|....
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 5 67787743
No 244
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0035 Score=37.99 Aligned_cols=19 Identities=37% Similarity=0.787 Sum_probs=9.1
Q ss_pred cceeeccCCcccccchhhh
Q 037340 623 LRFLNLSGTSIQFLPDSIN 641 (1276)
Q Consensus 623 Lr~L~L~~~~i~~lp~~i~ 641 (1276)
|++|||++|+++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444443
No 245
>PRK06696 uridine kinase; Validated
Probab=95.93 E-value=0.0085 Score=63.43 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|++-+++|.+.+.... .+...+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46777888888886542 35678999999999999999999987
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.92 E-value=0.015 Score=59.14 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=29.0
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEE
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWT 249 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 249 (1276)
....+|.++|+.|+||||+|+.++. +....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 3456999999999999999999997 455555555555
No 247
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.00043 Score=70.58 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEe
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKI 1178 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~L 1178 (1276)
.+.+.|+.++|. +..+ +....++.|+.|.|+-|. ++++.....+++|++|+|..|.|.......-+.++|+|+.|+|
T Consensus 19 ~~vkKLNcwg~~-L~DI-sic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDI-SICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCC-ccHH-HHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 466778888884 4444 234578899999999888 8888777788999999999999887665556788999999999
Q ss_pred cCC
Q 037340 1179 SGG 1181 (1276)
Q Consensus 1179 s~~ 1181 (1276)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 875
No 248
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.89 E-value=0.035 Score=57.22 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=54.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh--
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL-- 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l-- 290 (1276)
-+++.|.|.+|.||||+++.+... .... ...+.+......-... +.+..+.. ...+..........-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~----a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE----AQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS-----EEEHHHHTTEECCEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc----hhhHHHHHhcCCccccc
Confidence 378899999999999999988763 2222 2233333333322222 22222211 111111000000000
Q ss_pred ----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 291 ----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 291 ----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
..++-+||+|++.-.+...+..+...... .|+++|+.--.
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 23446999999977776777777766554 47788776543
No 249
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.88 E-value=0.18 Score=55.38 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=38.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
+.++=..+....+..++.. .+.|.|.|.+|+||||+|+.++. +....| +.|......+.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~--------~~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~ 103 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY--------DRRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSR 103 (327)
T ss_pred CCccCCHHHHHHHHHHHhc--------CCcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCCh
Confidence 3444455556667777743 24589999999999999999987 333222 34555544443
No 250
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0037 Score=64.14 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=46.4
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCC--ccc-ccchhhhccccccEEecCCccchhhhccc---cCCccccce
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGT--SIQ-FLPDSINSLYNLYTILLEDCYWLKKLCQD---MGNLTKLHH 672 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~---i~~L~~L~~ 672 (1276)
.|..|++.+..++.+ ..+-.|++|++|.++.| .+. .++-...++++|++|++++| .++. +++ +..+.+|..
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKS 120 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhh
Confidence 344444444443333 12334555666666655 332 33333444456666666655 2222 122 334455555
Q ss_pred eecccccccccCcc----ccCCccccccCCceEec
Q 037340 673 LINFNVLSLKEMPK----GFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 673 L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~ 703 (1276)
|++++|. ...+-. .+.-+++|..|+.+.+.
T Consensus 121 Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 121 LDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 5655554 222211 14445666666655544
No 251
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.87 E-value=0.025 Score=59.83 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=32.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD 256 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1276)
....++.|.|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45679999999999999999999873 333334677887655543
No 252
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.87 E-value=0.056 Score=68.40 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=94.4
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.+..++++.+.+.-.-. .+-...+-+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4578888888888776532100 01123456889999999999999999983 33233 222211
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC------------HhhHhhhccCCCC--CCCCc
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN------------YENWSILSRPFGV--GAPGS 324 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~~~~~~~~~~l~~--~~~gs 324 (1276)
+++... .......+...+...-+..+.+|++|++..-. ......+...+.. ...+-
T Consensus 522 ----~l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 11122223333334445667899999983210 0011222222221 12344
Q ss_pred EEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 325 KIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 325 ~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
-||.||..++.... + .-+..+.+...+.++-.++|+.+..+.. .....+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 56667765443221 1 2346788888888888888876543221 111222 344666777654
No 253
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.86 E-value=0.025 Score=60.83 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=40.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...+.=|+|.+|+|||.||.+++-...+... =..++|++-...|+..++. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4569999999999999999888753222222 2358899998889887764 466554
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.85 E-value=0.031 Score=54.39 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=60.0
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC---CCHHHHHHHHHHHhhcccCC-----CCCcH------
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED---FDVSRVTKSILRSIADDQIK-----DDDDL------ 279 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~-----~~~~~------ 279 (1276)
..|-|++..|.||||+|...+- +...+=..+.++.+-+. .....+++.+ ..+...... ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888889999999987775 44444334555554333 2333333332 111000000 00111
Q ss_pred -HHHHHHHHHHhcC-CcceEeecCCCcc---CHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 280 -NSLQVKLKKQLSG-KKILLVLDDVWNE---NYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 280 -~~~~~~l~~~l~~-kr~LlvlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
....+..++.+.. +-=|+|||++-.. .....+.+...+.....+..||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233444444 4459999998321 1122334444444444577899999984
No 255
>PRK09354 recA recombinase A; Provisional
Probab=95.82 E-value=0.017 Score=63.91 Aligned_cols=86 Identities=21% Similarity=0.156 Sum_probs=57.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1276)
+..+++-|+|++|+||||||.+++.. ....-..++||...+.++.. .+++++.... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999998863 33445678899888877753 2344432210 1233455555555
Q ss_pred HHHhc-CCcceEeecCCC
Q 037340 287 KKQLS-GKKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l~-~kr~LlvlDdv~ 303 (1276)
...++ +..-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 455689999983
No 256
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.75 E-value=0.0071 Score=70.03 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=40.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+++|.++.+++|++.|...-..-+...+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999332111234567999999999999999999987
No 257
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.14 Score=61.89 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=101.9
Q ss_pred CCeeecchhhHH---HHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 185 EAKVYGREKDKE---AIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 185 ~~~~vGr~~~~~---~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
-.++.|-++.++ +++++|..++.. +..-++=+-++|++|.|||-||++++-...+ =|++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH----
Confidence 346888876555 555555433210 2344677899999999999999999984322 23444433
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc---------------CHhhHhhhccCCCCCCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE---------------NYENWSILSRPFGVGAPG 323 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---------------~~~~~~~~~~~l~~~~~g 323 (1276)
++++.+.+.. .....+.....=...++.|.+|++... ......++...+.....+
T Consensus 379 ----EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 2223222211 011111122222345678888877321 112233443333333333
Q ss_pred c--EEEEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 324 S--KIVVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 324 s--~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
. -++-+|...++.+.. .-++.+.++.-+...-.++|..++..... ..+..++++ |+...-|.+=|.
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 3 334456555554321 23567888888888999999988754332 234556666 888888887543
No 258
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.72 E-value=0.02 Score=60.95 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=52.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCC-CHHHHHHHHHHHhhcc------cCCCCCcHHH--
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDF-DVSRVTKSILRSIADD------QIKDDDDLNS-- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 281 (1276)
+..-++|.|..|+||||||+++++ .++.+|+ ..+++-+.+.. .+.++.+++.+.=... ...+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999998 4555554 44555666554 3445555554321110 0111111111
Q ss_pred ---HHHHHHHHh--c-CCcceEeecCC
Q 037340 282 ---LQVKLKKQL--S-GKKILLVLDDV 302 (1276)
Q Consensus 282 ---~~~~l~~~l--~-~kr~LlvlDdv 302 (1276)
..-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112234444 3 89999999999
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.091 Score=60.39 Aligned_cols=155 Identities=15% Similarity=0.248 Sum_probs=87.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
+.-|.++|++|.|||-||++|+| +.+..| ++|-.+ + ++... ...........+.+.=..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----E----LlNkY------VGESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----E----LLNKY------VGESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----H----HHHHH------hhhHHHHHHHHHHHhhcC
Confidence 45678999999999999999999 455455 444333 1 11111 112222333444444456
Q ss_pred CcceEeecCCCcc-----C------HhhHhhhccCCCC--CCCCcEEEEEecchhhhhh--cC---CCCceecCCCChhh
Q 037340 293 KKILLVLDDVWNE-----N------YENWSILSRPFGV--GAPGSKIVVTTRNLGVAES--MG---VDPAYQLKELSNDD 354 (1276)
Q Consensus 293 kr~LlvlDdv~~~-----~------~~~~~~~~~~l~~--~~~gs~ilvTtr~~~v~~~--~~---~~~~~~l~~L~~~~ 354 (1276)
-+++|.||.++.- + .....++..-+.. ...|--||-.|..+++-+. +. -+...-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7899999998331 0 1112333333332 2256667766765555332 11 24556677778888
Q ss_pred HHHhhhhcccCCCCC-CCCcchHHHHHHHHHHcCCCh
Q 037340 355 CLCVLTQISLGARDF-NMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 355 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 390 (1276)
-.++++........+ ..+-++.++|+. .+|.|.-
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888888776532221 233456666654 3555543
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.03 Score=60.01 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=47.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
+..-+.++|.+|+|||.||.++.+. ....--.+.++++ .+++.++...... ......+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~---------~~~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE---------GRLEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc---------CchHHHHHHHhh
Confidence 3456899999999999999999984 4433234555544 3444555444432 112222333222
Q ss_pred CCcceEeecCCCccCHhhH
Q 037340 292 GKKILLVLDDVWNENYENW 310 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~ 310 (1276)
+-=||||||+.-.....|
T Consensus 167 -~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 167 -KVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred -cCCEEEEecccCccCCHH
Confidence 224899999966444444
No 261
>PHA02244 ATPase-like protein
Probab=95.67 E-value=0.098 Score=57.96 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|.|+|++|+|||++|+++++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987
No 262
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.67 E-value=0.03 Score=55.73 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=32.1
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+||....++++.+.+..... .. ..|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 36778888888887754321 22 45679999999999999999974
No 263
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.65 E-value=0.038 Score=68.63 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=67.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
..++|-++.++.+.+.+...... .......+.++|+.|+|||++|+.++.. .. ...+.++.+.-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhcccc----
Confidence 45899999999999988632110 1123457889999999999999999873 22 223344443322111
Q ss_pred HHHHHhhcccCCCC-CcHHHHHHHHHHHhc-CCcceEeecCCCccCHhhHhhhccCCC
Q 037340 263 SILRSIADDQIKDD-DDLNSLQVKLKKQLS-GKKILLVLDDVWNENYENWSILSRPFG 318 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~-~~~~~~~~~l~~~l~-~kr~LlvlDdv~~~~~~~~~~~~~~l~ 318 (1276)
.+.+-++.+..... ..... +.+.++ ....+|+||++.....+.+..+...+.
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~----L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGL----LTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCcccccccch----HHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11111221111011 11112 222333 344699999997766677777766554
No 264
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.078 Score=59.14 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=44.6
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhcC-CCCceecCCCChhhHHHhhhhc
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESMG-VDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~~-~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
+++-++|+|++..-+......+...+.....+..+|++|.+.. +...+. --..+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 4444556688866555555555555543334566777777643 332222 2367889999999998888653
No 265
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.047 Score=58.48 Aligned_cols=89 Identities=24% Similarity=0.207 Sum_probs=58.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHH-hhcccCCCCCcHHH---HHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRS-IADDQIKDDDDLNS---LQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~---~~~~l 286 (1276)
+..+++=|+|+.|.||||+|.+++- .....-..++|++....+++..+.. +... +..-......+.++ +.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999886 3444455889999999998876643 3333 22211112333333 33333
Q ss_pred HHHhcCCcceEeecCC
Q 037340 287 KKQLSGKKILLVLDDV 302 (1276)
Q Consensus 287 ~~~l~~kr~LlvlDdv 302 (1276)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3333334569999998
No 266
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.56 E-value=0.087 Score=53.66 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=65.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE---EcCCCCHHHHHH------HHHHHhhccc-----CCCCC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC---VSEDFDVSRVTK------SILRSIADDQ-----IKDDD 277 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~------~i~~~l~~~~-----~~~~~ 277 (1276)
...+++|+|..|.|||||++.++... ......+++. +. ..+...... ++++.++... ...-.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 34689999999999999999998732 2233444432 11 112222111 1333333221 00111
Q ss_pred cHHHHHHHHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCCC-CC-CcEEEEEecchhhhhh
Q 037340 278 DLNSLQVKLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGVG-AP-GSKIVVTTRNLGVAES 338 (1276)
Q Consensus 278 ~~~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~-~~-gs~ilvTtr~~~v~~~ 338 (1276)
.-+...-.+.+.+-..+-++++|+.-. -+.+..+.+...+... .. |..||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 222233345666667788999998733 2233333443333221 12 6688888887665433
No 267
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.55 E-value=0.033 Score=66.96 Aligned_cols=43 Identities=33% Similarity=0.417 Sum_probs=35.5
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999998876432 235668999999999999999976
No 268
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00096 Score=68.11 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=37.8
Q ss_pred CCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhcc--ccCCccccceee
Q 037340 597 LPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQ--DMGNLTKLHHLI 674 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~ 674 (1276)
+.+.+.|++.||.++++. .+.+|+.|++|.|+-|+|+.| +.+..+++|+.|.|..| .+..+.+ -+.+|++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 334444555555554442 234455555555555555554 23445555555555544 2222211 234555555555
Q ss_pred ccccc
Q 037340 675 NFNVL 679 (1276)
Q Consensus 675 l~~~~ 679 (1276)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55544
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.51 E-value=0.047 Score=59.87 Aligned_cols=88 Identities=19% Similarity=0.117 Sum_probs=46.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
..++++|+|++|+||||++..++.....+..-..+..|+..... ...+.+....+.++.+.. ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc-
Confidence 45799999999999999999888632222111244555543211 122233333333333222 233444454444433
Q ss_pred cCCcceEeecCC
Q 037340 291 SGKKILLVLDDV 302 (1276)
Q Consensus 291 ~~kr~LlvlDdv 302 (1276)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 32 357777754
No 270
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.49 E-value=0.088 Score=51.17 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=57.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
...+++|+|..|.|||||++.+.... ......+|+.-.. .+.-.. .-..-+...-.+.+.+-
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~ 86 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLL 86 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHh
Confidence 34689999999999999999998732 1223334332100 000000 01111222333556666
Q ss_pred CCcceEeecCCCc-cCHhhHhhhccCCCCCCCCcEEEEEecchhhhhh
Q 037340 292 GKKILLVLDDVWN-ENYENWSILSRPFGVGAPGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 292 ~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 338 (1276)
.+.-++++|+.-. -+......+...+... +..||++|.+.+....
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 6777899998732 2233333343333222 2468888887665543
No 271
>PRK04132 replication factor C small subunit; Provisional
Probab=95.47 E-value=0.17 Score=63.08 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=93.4
Q ss_pred cCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEee
Q 037340 221 MGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVL 299 (1276)
Q Consensus 221 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~Llvl 299 (1276)
|.++||||+|..++++. ..+.++ ..+-+++++..+.. ..++++..+...... -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~---------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI---------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc---------------CCCCCEEEEE
Confidence 66889999999999842 112222 24455666544443 333444333221110 0124569999
Q ss_pred cCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHH
Q 037340 300 DDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKE 377 (1276)
Q Consensus 300 Ddv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (1276)
|++...+......+...+......+++|.++.+. .+...+. -...+.+.+++.++..+.+.+.+...+- . --.+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~---i~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C---CCHH
Confidence 9998877777788877776555566777666553 3332222 2367999999999988888765532221 1 1145
Q ss_pred HHHHHHHHcCCChHHHH
Q 037340 378 VGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 378 ~~~~i~~~~~g~PLai~ 394 (1276)
....|++.++|.+-.+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 77889999999885443
No 272
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0072 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.8
Q ss_pred ceEEEEecCccccccCcccccc
Q 037340 599 RLRVFSLRGYCISKLPNEIGNL 620 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L 620 (1276)
+|++|||++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 273
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.47 E-value=0.076 Score=53.99 Aligned_cols=128 Identities=20% Similarity=0.063 Sum_probs=62.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhccc--------------CCCCC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQ--------------IKDDD 277 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~~~~~ 277 (1276)
...+++|.|..|.|||||++.+..-.. .....+++.-. +.......+-+.+.--. ...-.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 346899999999999999999986321 11223332110 11111011111111000 00111
Q ss_pred cHHHHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcCCCCceec
Q 037340 278 DLNSLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMGVDPAYQL 347 (1276)
Q Consensus 278 ~~~~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l 347 (1276)
.-+...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+.... .++.+.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1122233455666677789999987442 222233332222211236678888888766542 3444444
No 274
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.034 Score=67.49 Aligned_cols=154 Identities=18% Similarity=0.254 Sum_probs=83.7
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-cc-----ccEEEEEEcCCCCHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-HF-----QIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f-----~~~~wv~~~~~~~~~~~ 260 (1276)
.++||++|++++++.|....- +-+ .++|.+|+|||++|.-++. ++.. .- +..++ +
T Consensus 171 PvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~-s---------- 231 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIY-S---------- 231 (786)
T ss_pred CCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEE-E----------
Confidence 478999999999999976532 222 4689999999999887776 3321 11 11111 0
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc---------CHhhHhhhccCCCCCCCCcEEEEEec
Q 037340 261 TKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE---------NYENWSILSRPFGVGAPGSKIVVTTR 331 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilvTtr 331 (1276)
-++..-+.+... ...-.+.+...+...-+.++..+++|.+..- ..+.-.-++..+.. +.--.|=.||-
T Consensus 232 -LD~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~ 308 (786)
T COG0542 232 -LDLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTL 308 (786)
T ss_pred -ecHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccH
Confidence 111122222221 2222233333333333456899999998431 11222222333332 22223445554
Q ss_pred chhhhhhc-------CCCCceecCCCChhhHHHhhhhcc
Q 037340 332 NLGVAESM-------GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 332 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
+ +.-..+ .-.+.+.+...+.+++..+++-..
T Consensus 309 ~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 D-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred H-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4 221111 234678899999999999887543
No 275
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.44 E-value=0.036 Score=61.32 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=42.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHhhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSIAD 270 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1276)
...+++-|+|.+|+|||+++.+++-...... .=..++||+....|+.+++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4567999999999999999988774322211 124688999999888887754 5565543
No 276
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.015 Score=54.99 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
--|.|.|++|+||||+++.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 3579999999999999999997
No 277
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.41 E-value=0.079 Score=53.20 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcch-hh--hcc---cc--cEEEEEEcCCCCHHHHHHHHHHHhhcccC---CCCC--c
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDD-RV--QRH---FQ--IKAWTCVSEDFDVSRVTKSILRSIADDQI---KDDD--D 278 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~--~ 278 (1276)
...+++|+|+.|+|||||.+.+..+. .+ ... |. .+.|+ .+ .+.++.+..... .... +
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999886321 11 100 10 12222 11 345555543211 1111 1
Q ss_pred -HHHHHHHHHHHhcCC--cceEeecCCCc-cCHhhHhhhccCCCC-CCCCcEEEEEecchhhhhhcCCCCceec
Q 037340 279 -LNSLQVKLKKQLSGK--KILLVLDDVWN-ENYENWSILSRPFGV-GAPGSKIVVTTRNLGVAESMGVDPAYQL 347 (1276)
Q Consensus 279 -~~~~~~~l~~~l~~k--r~LlvlDdv~~-~~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~~~~~~~~~~l 347 (1276)
-....-.+.+.+-.+ .-++++|+.-. -+......+...+.. ...|..||++|.+.+.... .++.+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122233355555556 77888898733 223333333333321 1246778899988766532 3444444
No 278
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.37 E-value=0.13 Score=54.81 Aligned_cols=172 Identities=22% Similarity=0.242 Sum_probs=88.6
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc-hhhhcccccEEEEEEcCCCCH-HHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND-DRVQRHFQIKAWTCVSEDFDV-SRVTKSI 264 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~~~i 264 (1276)
.++|-.++..++..++...-. .+...-|.|+|+.|.|||+|...+..+ .++.++| .-|........ .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 578999999988888854321 123456789999999999998777764 1233333 44455444333 2245566
Q ss_pred HHHhhcccCC---CCCcHHHHHHHHHHHhc------CCcceEeecCCCccCH-hhHhhhccCC----CCCCCCcEEEEEe
Q 037340 265 LRSIADDQIK---DDDDLNSLQVKLKKQLS------GKKILLVLDDVWNENY-ENWSILSRPF----GVGAPGSKIVVTT 330 (1276)
Q Consensus 265 ~~~l~~~~~~---~~~~~~~~~~~l~~~l~------~kr~LlvlDdv~~~~~-~~~~~~~~~l----~~~~~gs~ilvTt 330 (1276)
.+|+...... ...+..+-...+-..|+ +-++.+|+|.++-... ..-..+...| ....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 6655432211 12222222233333332 2357888887733211 0000111111 1123456677899
Q ss_pred cch-------hhhhhcCCCCceecCCCChhhHHHhhhhcc
Q 037340 331 RNL-------GVAESMGVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 331 r~~-------~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
|-. .|-.++.-..++-+..++-++...+++...
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 952 222232222344455566666666665543
No 279
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.25 Score=49.98 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=93.9
Q ss_pred eec-chhhHHHHHHHHhcCC-C------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 188 VYG-REKDKEAIVELLLRDD-L------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 188 ~vG-r~~~~~~l~~~L~~~~-~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
+|| -+..+++|.+.+.-.- . -+-.+++-+.++|++|.|||-||+.|+++ ....|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 444 4666666665542110 0 02245677889999999999999999973 23455667644 1
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------C---HhhHhhhccCCCCC--CCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------N---YENWSILSRPFGVG--APG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~---~~~~~~~~~~l~~~--~~g 323 (1276)
+ .+..-+... .-..++.-.-+ ..-+..|..|.+++. + +...-++...+..+ .+.
T Consensus 217 l----vqk~igegs---rmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 L----VQKYIGEGS---RMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred H----HHHHhhhhH---HHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 2 222111110 00111111111 233567777777331 0 11122233333322 356
Q ss_pred cEEEEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 037340 324 SKIVVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGG 398 (1276)
Q Consensus 324 s~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 398 (1276)
-+||+.|..-++.+.. ..++.++..+-+++.-.++++-+.-.- +-...-++..+|+++.-..|.--.++-+=|+
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 6888887655554321 245668888888777777776554221 1122234445444443222222334444444
Q ss_pred H
Q 037340 399 L 399 (1276)
Q Consensus 399 ~ 399 (1276)
+
T Consensus 366 m 366 (404)
T KOG0728|consen 366 M 366 (404)
T ss_pred H
Confidence 4
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.31 E-value=0.033 Score=57.56 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH-HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS-RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+|.|+|+.|.||||++..+... ........++. +.++.... .-...+..+- . ...+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~-vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----E-VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----c-cCCCccCHHHHHHHHhcC
Confidence 46899999999999999987762 33233333332 22221100 0000111110 0 111223455667777876
Q ss_pred CcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhh
Q 037340 293 KKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVA 336 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 336 (1276)
..=.|++|++.+ .+.+....... ..|-.++.|+-..++.
T Consensus 74 ~pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 777999999954 34444433322 2455677777655544
No 281
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.31 E-value=0.013 Score=60.19 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecC--CCCccccccccCCCCCcceEEecCCCCCCcc-CCC--CCC
Q 037340 1119 MHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDL--KISKPLFQWGLNRFNSLRKLKISGGFPDLVS-SPR--FPA 1193 (1276)
Q Consensus 1119 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n--~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~--~~~ 1193 (1276)
...+..|+.|.+.++. ++++.....+++|+.|.++.| ...+..... ...+|+|++|++++|.....+ ... .+.
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhc
Confidence 3445566666666666 555555556677777777777 333222221 345577777777776544221 111 334
Q ss_pred CcCeeeccCCCC
Q 037340 1194 SLTELKISDMPS 1205 (1276)
Q Consensus 1194 ~L~~L~l~~~~~ 1205 (1276)
+|.+|++.+|..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 455555555543
No 282
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.1 Score=52.56 Aligned_cols=120 Identities=18% Similarity=0.174 Sum_probs=59.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC--CCCHHHHHHHHHHHhhcccC--C--C-------CCc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE--DFDVSRVTKSILRSIADDQI--K--D-------DDD 278 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~--~--~-------~~~ 278 (1276)
...+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...+.--.. . . -..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCH
Confidence 34689999999999999999998732 1223333321110 0011111 111110000 0 0 001
Q ss_pred HHHHHHHHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCCCCCCcEEEEEecchhhhhh
Q 037340 279 LNSLQVKLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGVGAPGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 279 ~~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 338 (1276)
-+...-.+.+.+-.++-++++|+-.. -+......+...+.....+..||++|.+.+....
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11122335556666778999998743 1222333333322221235678888888666543
No 283
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.30 E-value=0.059 Score=54.00 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=29.3
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD 256 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1276)
++.|+|.+|+||||+|..+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 333334667777765543
No 284
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.29 E-value=0.033 Score=56.57 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=44.5
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcc-cCCCCCcHHHHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADD-QIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~l~~~ 289 (1276)
..+.+|+|.|.+|.||||+|+.++. .+.... ++-++- +.+-...-.....+..... ......+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 4567999999999999999999987 343331 111111 1111111111111111111 112456777788888888
Q ss_pred hcCCc
Q 037340 290 LSGKK 294 (1276)
Q Consensus 290 l~~kr 294 (1276)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 285
>PRK00625 shikimate kinase; Provisional
Probab=95.27 E-value=0.12 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|.++||+|+||||+|+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.27 E-value=0.12 Score=50.48 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHhcCCcceEeecCCCc--cCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhcC
Q 037340 278 DLNSLQVKLKKQLSGKKILLVLDDVWN--ENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESMG 340 (1276)
Q Consensus 278 ~~~~~~~~l~~~l~~kr~LlvlDdv~~--~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~ 340 (1276)
.-++-.-.|.+.+-+++-+++-|.--. +..-.|+.+.-.-.-+..|..|+++|.+..+.+.+.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334455567788888899999996422 222345443222222346999999999988877653
No 287
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.20 E-value=0.048 Score=61.24 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
....++-|+|.+|+|||++|.+++........ =..++||+....++..++.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 34678999999999999999999864222111 13789999998888776643 34444
No 288
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.19 E-value=0.042 Score=61.22 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=42.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHhhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSIAD 270 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1276)
....++-|+|.+|+|||+|+.+++-...... .-..++||+....|+++++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 4557888999999999999998864322211 124679999999999887654 5555543
No 289
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.061 Score=62.84 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=56.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC--CHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF--DVSRVTK 262 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~ 262 (1276)
+.+|+--...+++..+.....- -...-|.|.|+.|+|||+||+++++... +.+.-.+..|+++.-. ..+.+++
T Consensus 407 e~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk 481 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK 481 (952)
T ss_pred CCceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH
Confidence 3455554444444444333221 2345688999999999999999998543 4444455666665432 1222222
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCC
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDV 302 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv 302 (1276)
. +...+...+...+-+|||||+
T Consensus 482 ~------------------l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 482 F------------------LNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred H------------------HHHHHHHHHhhCCcEEEEcch
Confidence 1 122334445667889999999
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.069 Score=60.05 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=49.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcC-CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSE-DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
..++.++|+.|+||||++..+... ....+ ..+..++... .....+-++...+.++.+.. ...+..++...+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~--~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR--CVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-H
Confidence 468999999999999999999873 22233 2445554322 22344555555555554332 2222223333333 3
Q ss_pred hcCCcceEeecCCCc
Q 037340 290 LSGKKILLVLDDVWN 304 (1276)
Q Consensus 290 l~~kr~LlvlDdv~~ 304 (1276)
+.++ -+|++|..-.
T Consensus 213 l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNK-HMVLIDTIGM 226 (374)
T ss_pred hcCC-CEEEEcCCCC
Confidence 3444 5667998743
No 291
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.14 E-value=0.084 Score=56.52 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC-----------------
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----------------- 273 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 273 (1276)
....++.|+|.+|+|||++|.++... ....=..++|++..+. ..++.+.+ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45679999999999999999999652 2223346788888654 34444443 22221100
Q ss_pred --CCCCcHHHHHHHHHHHhcC-CcceEeecCCC
Q 037340 274 --KDDDDLNSLQVKLKKQLSG-KKILLVLDDVW 303 (1276)
Q Consensus 274 --~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~ 303 (1276)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999974
No 292
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.034 Score=52.59 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=32.2
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADD 271 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 271 (1276)
+|+|.|++|.||||+|+.++++.... | .+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999843222 1 13345778888876653
No 293
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.11 E-value=0.11 Score=52.23 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=56.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE------EcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC------VSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKL 286 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l 286 (1276)
..+++|+|..|.|||||++.+..-. ......+++. +.+... -..-+...-.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~l 82 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAI 82 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHH
Confidence 4689999999999999999998632 1222233221 111110 11112223345
Q ss_pred HHHhcCCcceEeecCCCc-cCHhhHhhhccCCCCC-CC-CcEEEEEecchhhhhh
Q 037340 287 KKQLSGKKILLVLDDVWN-ENYENWSILSRPFGVG-AP-GSKIVVTTRNLGVAES 338 (1276)
Q Consensus 287 ~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~-~~-gs~ilvTtr~~~v~~~ 338 (1276)
.+.+..++-++++|+--. -+......+...+... .. +..||++|.+......
T Consensus 83 aral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 83 AAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 566666778999998733 1223333333222211 12 3568888887665543
No 294
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.09 E-value=0.058 Score=63.38 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=51.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
+.-+++-++|++|+||||||.-+++..- | .++=|++|+.-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s----------------~l 382 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHS----------------VL 382 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhcc----------------cc
Confidence 4567999999999999999999887321 2 3556677777666665555555443322 12
Q ss_pred --cCCcceEeecCCCccC
Q 037340 291 --SGKKILLVLDDVWNEN 306 (1276)
Q Consensus 291 --~~kr~LlvlDdv~~~~ 306 (1276)
.+++.-+|+|.++...
T Consensus 383 ~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccCCCcceEEEecccCCc
Confidence 2567789999996654
No 295
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.09 E-value=0.072 Score=59.18 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=39.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhccc----ccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF----QIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
....++.|+|.+|+|||++|..++......... ..++|++....++..++ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 456799999999999999999887532221111 35689998888877763 4445544
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.07 E-value=0.069 Score=53.30 Aligned_cols=118 Identities=17% Similarity=0.063 Sum_probs=61.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC--CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE--DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
...+++|+|..|.|||||.+.++... ......+++.-.. ..+..+..+ +.++-.. .-..-+...-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHH
Confidence 34689999999999999999998632 2233444442111 111111111 1111100 111222233445666
Q ss_pred hcCCcceEeecCCCc-cCHhhHhhhccCCCCC-CCCcEEEEEecchhhhh
Q 037340 290 LSGKKILLVLDDVWN-ENYENWSILSRPFGVG-APGSKIVVTTRNLGVAE 337 (1276)
Q Consensus 290 l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~-~~gs~ilvTtr~~~v~~ 337 (1276)
+-.++-++++|+.-. -+......+...+... ..|..||++|.+.....
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 667778899998733 2333333343333211 23667888888866443
No 297
>PRK07667 uridine kinase; Provisional
Probab=95.06 E-value=0.042 Score=56.56 Aligned_cols=37 Identities=16% Similarity=0.412 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466777775432 3458999999999999999999987
No 298
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.03 E-value=0.024 Score=54.74 Aligned_cols=107 Identities=16% Similarity=0.118 Sum_probs=59.3
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh-hcccccEEEEEEcCCCCHHHHHHHHHHH
Q 037340 189 YGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV-QRHFQIKAWTCVSEDFDVSRVTKSILRS 267 (1276)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1276)
||+-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 466666777777664421 22356789999999999999988874221 1112110 0000
Q ss_pred hhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCC-CCCCcEEEEEecc
Q 037340 268 IADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGV-GAPGSKIVVTTRN 332 (1276)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~-~~~gs~ilvTtr~ 332 (1276)
.+ .+.+.+ .+.--++++|+..-+.+....+...+.. .....|+|.||+.
T Consensus 60 ---------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 ---------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 111111 2455788898866555555555555542 2467799999985
No 299
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.096 Score=61.15 Aligned_cols=160 Identities=15% Similarity=0.094 Sum_probs=81.4
Q ss_pred CeeecchhhHHHHHHHHhcCCC-C------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-R------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
+++=|.|+-++++.+.+.-.-. + +-...+-|..+|++|.|||++|+.+++ .....| +.+..+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP---- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----
Confidence 3454577777666654422100 0 224567889999999999999999998 344444 333221
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCCCCCCCcEEE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFGVGAPGSKIV 327 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~~~~~gs~il 327 (1276)
++.... .......+.+..++.=+.-..+|.||.++.-. .....++...+........|+
T Consensus 503 ----EL~sk~------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 503 ----ELFSKY------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred ----HHHHHh------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 111111 11122223333333333445777778773211 011222333333222222333
Q ss_pred E---Eecchhhhhhc-C---CCCceecCCCChhhHHHhhhhcccCC
Q 037340 328 V---TTRNLGVAESM-G---VDPAYQLKELSNDDCLCVLTQISLGA 366 (1276)
Q Consensus 328 v---Ttr~~~v~~~~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~ 366 (1276)
| |-|...+...+ . -++.+.++.-+.+.-.++|+.++.+.
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 2 33433332222 2 45667777777777789999887543
No 300
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.11 Score=60.28 Aligned_cols=89 Identities=20% Similarity=0.097 Sum_probs=45.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+|+|+|++|+||||++..++.....+.....+..++... .....+.++...+.++.... ...+...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-
Confidence 457999999999999999988876221111123344444322 11112222222233322211 223334444444433
Q ss_pred cCCcceEeecCCC
Q 037340 291 SGKKILLVLDDVW 303 (1276)
Q Consensus 291 ~~kr~LlvlDdv~ 303 (1276)
. ..=+|++|..-
T Consensus 427 ~-~~DLVLIDTaG 438 (559)
T PRK12727 427 R-DYKLVLIDTAG 438 (559)
T ss_pred c-cCCEEEecCCC
Confidence 3 34588888874
No 301
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.00 E-value=0.17 Score=50.73 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=59.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEE-------EEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWT-------CVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQV 284 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 284 (1276)
...+++|+|..|.|||||++.+...... ....+++ .+.+..... ...+.+.+.......-..-+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHH
Confidence 3468999999999999999999874221 1121111 122222111 012222221101112222233344
Q ss_pred HHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCCCCCCcEEEEEecchhhh
Q 037340 285 KLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGVGAPGSKIVVTTRNLGVA 336 (1276)
Q Consensus 285 ~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 336 (1276)
.+.+.+-.++=++++|+--. -+......+...+... +..||++|.+....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 45666667778889998633 1222333333322222 35688888876654
No 302
>PRK13695 putative NTPase; Provisional
Probab=94.99 E-value=0.024 Score=57.39 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037340 216 ISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~ 236 (1276)
|+|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 303
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.99 E-value=0.02 Score=58.57 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCCCeeEEEEeecCCCCcccc----cCCCCCccceeeeccCCCCcccCCC---------------CCCCCCceeEeecC
Q 037340 1096 LPSTKLTELMIWSCENLKALPN----SMHNLTSLLHLEIGRCPSLVSFPED---------------GFPTNLQSLEFEDL 1156 (1276)
Q Consensus 1096 ~~~~~L~~L~l~~~~~l~~lp~----~l~~l~~L~~L~l~~c~~l~~l~~~---------------~~~~~L~~L~l~~n 1156 (1276)
..||.|+..++++|..-...|+ .+++-+.|++|.+++|. ++.+... ..-|.|+......|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4467888888888866555553 34677888888888887 5544322 12367888888877
Q ss_pred CCCccc---cccccCCCCCcceEEecCCCCCCccCC-------CCCCCcCeeeccCCCCCcc----ccCCCCCCCCcCce
Q 037340 1157 KISKPL---FQWGLNRFNSLRKLKISGGFPDLVSSP-------RFPASLTELKISDMPSLER----LSSIGENLTSLKFL 1222 (1276)
Q Consensus 1157 ~~~~~~---~~~~l~~l~~L~~L~Ls~~~~~~~~~~-------~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L 1222 (1276)
.+..-. ....+.+-..|+.+.+..|........ ..+.+|+.|||.+|..... +...+...+.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 765211 112234445778888877654433221 1577888888888654331 22223445567888
Q ss_pred eccCC
Q 037340 1223 DLDNC 1227 (1276)
Q Consensus 1223 ~l~~c 1227 (1276)
.+.+|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 88887
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=94.94 E-value=0.16 Score=58.70 Aligned_cols=25 Identities=36% Similarity=0.399 Sum_probs=21.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+.+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998887776
No 305
>PRK08233 hypothetical protein; Provisional
Probab=94.87 E-value=0.067 Score=54.76 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999986
No 306
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.84 E-value=0.11 Score=52.63 Aligned_cols=126 Identities=20% Similarity=0.182 Sum_probs=62.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC--CCCHHHHHHHHHHHhhcccCC----C-------CCcH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE--DFDVSRVTKSILRSIADDQIK----D-------DDDL 279 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~----~-------~~~~ 279 (1276)
..+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...+.-.... . -..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 4689999999999999999998632 1223333321100 1111111 1111110000 0 0111
Q ss_pred HHHHHHHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCC-CCCCcEEEEEecchhhhhhcCCCCceec
Q 037340 280 NSLQVKLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGV-GAPGSKIVVTTRNLGVAESMGVDPAYQL 347 (1276)
Q Consensus 280 ~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~~~~~~~~~~l 347 (1276)
+...-.+.+.+-.++=++++|+... -+......+...+.. ...|..||++|.+.+... . .++++.+
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 1223345555666777899998743 122223333222221 123667888888876653 2 3344443
No 307
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.066 Score=56.54 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=46.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhh--hcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRV--QRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
-|+|.++|++|.|||+|.+++++.-.+ ...|....-+.++.. .++.+-..+ .......+.+.|.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 478999999999999999999986433 344544444444322 111111111 2233344555566666
Q ss_pred cCCcc--eEeecCC
Q 037340 291 SGKKI--LLVLDDV 302 (1276)
Q Consensus 291 ~~kr~--LlvlDdv 302 (1276)
.++.. .+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 55543 4456888
No 308
>PRK13948 shikimate kinase; Provisional
Probab=94.82 E-value=0.28 Score=49.46 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+.|.++|+.|+||||+++.+.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999987
No 309
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.81 E-value=0.082 Score=58.81 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=48.6
Q ss_pred CccEEEEEecCCChHH-HHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKT-TLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKT-tLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
+.++|+++|+.|+||| |||+..+.-....+ =..+..|+... .....+-++.-++-++.+-. ...+..++.+.+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh
Confidence 3789999999999998 56665554211122 23455665532 22344445555555555443 445555555555443
Q ss_pred hcCCcceEeecCCC
Q 037340 290 LSGKKILLVLDDVW 303 (1276)
Q Consensus 290 l~~kr~LlvlDdv~ 303 (1276)
++. =+|.+|-+.
T Consensus 280 -~~~-d~ILVDTaG 291 (407)
T COG1419 280 -RDC-DVILVDTAG 291 (407)
T ss_pred -hcC-CEEEEeCCC
Confidence 332 355556553
No 310
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.12 Score=58.50 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...++.++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 311
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.79 E-value=0.063 Score=58.79 Aligned_cols=86 Identities=22% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC----CCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK----DDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 286 (1276)
+..+++-|+|+.|+||||||.++.. .....-..++||.....++.... +.++.+... ..+..++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 4568999999999999999999987 44444556889999888776433 333332210 233445555555
Q ss_pred HHHhcC-CcceEeecCCC
Q 037340 287 KKQLSG-KKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l~~-kr~LlvlDdv~ 303 (1276)
.+.++. ..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 555543 44588999983
No 312
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.78 E-value=0.15 Score=55.46 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH--HHHHHHHHHhhcccC--CCCCcH-HHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS--RVTKSILRSIADDQI--KDDDDL-NSLQVK 285 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~--~~~~~~-~~~~~~ 285 (1276)
...+++.++|++|+||||++..++.. ....-..+.++... .+... +-++...+..+.... ....+. ....+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 34689999999999999999888863 33332345555543 23222 233334444432211 111222 222344
Q ss_pred HHHHhcCCcceEeecCCC
Q 037340 286 LKKQLSGKKILLVLDDVW 303 (1276)
Q Consensus 286 l~~~l~~kr~LlvlDdv~ 303 (1276)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445578888763
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.77 E-value=0.23 Score=57.50 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC--HHHHHHHHHHHhhcccCC--CCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD--VSRVTKSILRSIADDQIK--DDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~l 286 (1276)
..+.+|.++|.+|+||||+|..++.. ....-..+..|++. .+. ..+.++.+.++++.+... ...+........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 34679999999999999999999873 33322233444432 222 234455555655443221 112222222222
Q ss_pred HHHhcCCcceEeecCC
Q 037340 287 KKQLSGKKILLVLDDV 302 (1276)
Q Consensus 287 ~~~l~~kr~LlvlDdv 302 (1276)
.+...+. -+||+|..
T Consensus 170 l~~~~~~-DvVIIDTA 184 (437)
T PRK00771 170 LEKFKKA-DVIIVDTA 184 (437)
T ss_pred HHHhhcC-CEEEEECC
Confidence 2222333 56777876
No 314
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.76 E-value=0.056 Score=58.30 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=17.8
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.|.|+|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999987
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.75 E-value=0.13 Score=54.05 Aligned_cols=127 Identities=12% Similarity=0.124 Sum_probs=72.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-----CCCHHHHHHHHHHHhhcccC------CCCCcHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-----DFDVSRVTKSILRSIADDQI------KDDDDLN 280 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 280 (1276)
...+++|+|..|.||||+|+.+.. ...--...++..-.+ .....+...++++.++.... .+...-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 456899999999999999999986 222223333332111 12233445566666553321 1222222
Q ss_pred HHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhccCCC--CCCCCcEEEEEecchhhhhhcCC
Q 037340 281 SLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILSRPFG--VGAPGSKIVVTTRNLGVAESMGV 341 (1276)
Q Consensus 281 ~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~~~l~--~~~~gs~ilvTtr~~~v~~~~~~ 341 (1276)
.-.-.+.+.+.-+.-++|.|+.-+. +...-.++...+. ....|-..+..|-+-.++..+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2334577888889999999987332 1111122222221 12246778889998888776653
No 316
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.74 E-value=0.14 Score=63.12 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=81.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.++.|.+..++++.+.+.....+ ...-.+-|.|+|++|+|||++|+.++.. ....| +.++.+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 35678776666665544221100 1112345899999999999999999873 33223 2222111
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC----------HhhH----hhhccCCCC--CCCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN----------YENW----SILSRPFGV--GAPG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~~~----~~~~~~l~~--~~~g 323 (1276)
+. ... .........+.+...-...+.+|++|+++.-. ...+ ..+...+.. ...+
T Consensus 221 ~~----~~~------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhh------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 111 01112233333444444567899999984320 0111 122222221 1234
Q ss_pred cEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhccc
Q 037340 324 SKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 324 s~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
.-||.||..++.... + .-++.+.+...+.++-.+++..+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 455667776543321 1 1346677888888888888877653
No 317
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.085 Score=59.53 Aligned_cols=52 Identities=29% Similarity=0.289 Sum_probs=37.8
Q ss_pred Ceeecch---hhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcch
Q 037340 186 AKVYGRE---KDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDD 237 (1276)
Q Consensus 186 ~~~vGr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 237 (1276)
.++-|-| .|+++|+++|.+...- ++.-++-|.++|++|.|||-||++|+-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4566765 4677888888654210 23346678999999999999999999743
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=94.73 E-value=0.19 Score=56.01 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=47.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcc-cccEEEEEEcCCCC--HHHHHHHHHHHhhcccCC--CCCcH-HHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKAWTCVSEDFD--VSRVTKSILRSIADDQIK--DDDDL-NSLQVK 285 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~--~~~~~-~~~~~~ 285 (1276)
+..+|.++|++|+||||++..++.. .... + .++.+. .+.+. ..+-++.....++.+... ...+. ....+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 4689999999999999988888763 3322 2 233333 23332 223344555555543211 11222 222333
Q ss_pred HHHHhcCCcceEeecCCCc
Q 037340 286 LKKQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 286 l~~~l~~kr~LlvlDdv~~ 304 (1276)
+........=+|++|-.-.
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 3332222233889998744
No 319
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.72 E-value=0.15 Score=57.12 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=41.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHHHHHHHHHHhh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSRVTKSILRSIA 269 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1276)
....++-|+|.+|+|||++|..++-....... -..++|++....|+.+++ .+|++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 34678899999999999999888753222111 126899999999988776 45556554
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.72 E-value=0.23 Score=54.58 Aligned_cols=54 Identities=24% Similarity=0.198 Sum_probs=37.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|.|.+|+||||++.+++... ...+=..++|++.... ..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 34688999999999999999987632 1222346778877653 455666555544
No 321
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.70 E-value=0.003 Score=62.88 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=71.6
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
+..++..++||++.|.+..+-..|+.+..|..||++.|.|..+|+.++.+..+..+++..| .....|.+++.++.++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 5567788888988888888877888888888889998888888888888888888888877 778888888888888888
Q ss_pred eccccc
Q 037340 674 INFNVL 679 (1276)
Q Consensus 674 ~l~~~~ 679 (1276)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 877765
No 322
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.70 E-value=0.085 Score=59.21 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=40.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
....++-|+|.+|+|||++|.+++....... .=..++||+....|+..++. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 3467899999999999999999976432211 11378999999888877654 344443
No 323
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.02 Score=57.17 Aligned_cols=24 Identities=50% Similarity=0.588 Sum_probs=21.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-.+|+|-||-|+||||||+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999984
No 324
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.68 E-value=0.13 Score=52.02 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 325
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.67 E-value=0.0036 Score=76.10 Aligned_cols=172 Identities=24% Similarity=0.278 Sum_probs=96.9
Q ss_pred ecCCCCCcc--cCCCCCCCCCeeEEEEeec-CCCCccc----ccCCCCCccceeeeccCCCCcccCCC---CCCCCCcee
Q 037340 1082 VDGWPNLES--FPEEGLPSTKLTELMIWSC-ENLKALP----NSMHNLTSLLHLEIGRCPSLVSFPED---GFPTNLQSL 1151 (1276)
Q Consensus 1082 ~~~~~~l~~--~p~~~~~~~~L~~L~l~~~-~~l~~lp----~~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L 1151 (1276)
+.+|..+.. +-.....++.|++|++++| ......+ .....+.+|+.|+++.|..+++..-. ..+++|+.|
T Consensus 195 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L 274 (482)
T KOG1947|consen 195 LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETL 274 (482)
T ss_pred hcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceE
Confidence 445555544 3233445678888888873 2322222 23345678888888888864433211 236788888
Q ss_pred EeecCC-CCccccccccCCCCCcceEEecCCCCC----CccCCCCCCCcCeeeccCCC---CCccccCC-CCCC--CCcC
Q 037340 1152 EFEDLK-ISKPLFQWGLNRFNSLRKLKISGGFPD----LVSSPRFPASLTELKISDMP---SLERLSSI-GENL--TSLK 1220 (1276)
Q Consensus 1152 ~l~~n~-~~~~~~~~~l~~l~~L~~L~Ls~~~~~----~~~~~~~~~~L~~L~l~~~~---~l~~l~~~-~~~l--~~L~ 1220 (1276)
.+.+|. +++.........+++|++|+|+++..- +......+++|+.|.+..+. .++..... .... ..+.
T Consensus 275 ~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~ 354 (482)
T KOG1947|consen 275 SLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLA 354 (482)
T ss_pred ccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHh
Confidence 887777 454443333566788888888874221 11222245666665554443 34433211 1122 2677
Q ss_pred ceeccCCCCCcccCCCCCc-cccc-cccccCChhH
Q 037340 1221 FLDLDNCPKLKYFSKQGLP-KSLL-RLIIDECPLI 1253 (1276)
Q Consensus 1221 ~L~l~~c~~l~~l~~~~l~-~~L~-~L~i~~cp~l 1253 (1276)
.+.+.+|++++.+...... .... .+.+.+||.+
T Consensus 355 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 355 ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 7888888888776554333 1222 5677888877
No 326
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.18 Score=60.78 Aligned_cols=157 Identities=16% Similarity=0.117 Sum_probs=84.6
Q ss_pred eeecchhhHHHHHHHH---hcCCCC----CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 187 KVYGREKDKEAIVELL---LRDDLR----ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L---~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
++.|.+..++.+.+.+ ...... +-...+.+-++|++|.|||.||+++++ .....|- .+...
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~----- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS----- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH-----
Confidence 4556665555555443 221100 123456899999999999999999998 3444442 22211
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc------C-----HhhHhhhccCCCCC--CCCcEE
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE------N-----YENWSILSRPFGVG--APGSKI 326 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~------~-----~~~~~~~~~~l~~~--~~gs~i 326 (1276)
.++... .......+...+...-+..+..|.+|++..- . ......+...+... ..+..|
T Consensus 311 ---~l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~v 381 (494)
T COG0464 311 ---ELLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLV 381 (494)
T ss_pred ---HHhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEE
Confidence 111100 1122223334444455678899999998321 0 01223333333222 233344
Q ss_pred EEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhccc
Q 037340 327 VVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 327 lvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
|-||-.++..... .-+..+.+..-+.++..+.|..+..
T Consensus 382 i~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 382 IAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5555444332211 2245788888899999999998764
No 327
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.046 Score=54.92 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999984
No 328
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.61 E-value=0.19 Score=54.30 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=72.1
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcch-hhhcccccEE----EEEEcCCC-----CH
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDD-RVQRHFQIKA----WTCVSEDF-----DV 257 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~----wv~~~~~~-----~~ 257 (1276)
+-+|..+..--.++|+. +....|.+.|.+|.|||-||.+..-.. ..++.|..++ -+.+++.. +.
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 34567777777777865 457999999999999999986654321 2233444332 12333322 11
Q ss_pred H----HHHHHHHHHhhcccCCCCCcHHHHHHHHH---------HHhcCC---cceEeecCCCccCHhhHhhhccCCCCCC
Q 037340 258 S----RVTKSILRSIADDQIKDDDDLNSLQVKLK---------KQLSGK---KILLVLDDVWNENYENWSILSRPFGVGA 321 (1276)
Q Consensus 258 ~----~~~~~i~~~l~~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlvlDdv~~~~~~~~~~~~~~l~~~~ 321 (1276)
+ -..+.|...+..-..........+...+. .+++|+ .-+||+|.+.+-...+...+. ...+
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G 376 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAG 376 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---Hhcc
Confidence 1 12222222222111111111122222211 122343 459999999775555554444 4456
Q ss_pred CCcEEEEEecc
Q 037340 322 PGSKIVVTTRN 332 (1276)
Q Consensus 322 ~gs~ilvTtr~ 332 (1276)
.||||+.|---
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 89999988753
No 329
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.59 E-value=0.039 Score=57.64 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.58 E-value=0.22 Score=57.78 Aligned_cols=87 Identities=16% Similarity=0.050 Sum_probs=46.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
.+++.++|++|+||||++..++........-..+..|+....- ...+-++...+.++.+.. ...+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 4699999999999999988887632211222345556543211 111222333333333221 223344555555442 2
Q ss_pred CCcceEeecCC
Q 037340 292 GKKILLVLDDV 302 (1276)
Q Consensus 292 ~kr~LlvlDdv 302 (1276)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3468888976
No 331
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=0.22 Score=50.93 Aligned_cols=56 Identities=29% Similarity=0.265 Sum_probs=38.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhcchhhhccc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF 243 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f 243 (1276)
+++=|=.++++++.+...-.-.. +-+.++-|.++|++|.|||-+|++|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 34557777888777755321100 123466788999999999999999999 555555
No 332
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.54 E-value=0.22 Score=49.09 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=59.2
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC---CCCHHHHHHHHHHHhhccc---------CCCCC---c
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE---DFDVSRVTKSILRSIADDQ---------IKDDD---D 278 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~---------~~~~~---~ 278 (1276)
..|-|++-.|.||||.|...+- +...+=..+..+.+-+ .......+..+ .+.... ..... .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 5788888899999999987776 3333322333333322 22333333332 111100 00001 1
Q ss_pred HHHHHHHHHHHhcCCc-ceEeecCCCcc---CHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 279 LNSLQVKLKKQLSGKK-ILLVLDDVWNE---NYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 279 ~~~~~~~l~~~l~~kr-~LlvlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
....-+..++.+...+ =++|||.+-.. ..-+.+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1222333445554444 49999998321 1122234444444444677999999984
No 333
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.2 Score=50.69 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=61.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CC---------CCc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KD---------DDD 278 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~---------~~~ 278 (1276)
...+++|+|..|.|||||++.++... ......+++.-..-.+.. ..+...+.--.. .. -..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 34689999999999999999998732 122333433211000000 011111110000 00 011
Q ss_pred HHHHHHHHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCCC-CCCcEEEEEecchhhhhh
Q 037340 279 LNSLQVKLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGVG-APGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 279 ~~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~-~~gs~ilvTtr~~~v~~~ 338 (1276)
-+...-.+.+.+..++=++++|+.-. -+......+...+... ..|..||++|.+......
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 11222346666777888999999733 1233333333333211 236778999988765543
No 334
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.50 E-value=0.25 Score=51.02 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCcceEeecCCCc-cCHhhHhhhccCCCC--CCCCcEEEEEecchhhhhhcCCCCceecC
Q 037340 280 NSLQVKLKKQLSGKKILLVLDDVWN-ENYENWSILSRPFGV--GAPGSKIVVTTRNLGVAESMGVDPAYQLK 348 (1276)
Q Consensus 280 ~~~~~~l~~~l~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~--~~~gs~ilvTtr~~~v~~~~~~~~~~~l~ 348 (1276)
++-.-.+.+.+-..+-+|+.|+--. -+.+.-+.+...+.. ...|..||+.|.++.+|..+ ++++.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 4445567888888888999997522 122222333333322 23578899999999999864 3444443
No 335
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.49 E-value=0.048 Score=52.80 Aligned_cols=36 Identities=31% Similarity=0.190 Sum_probs=26.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC 250 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 250 (1276)
..||.|.|.+|.||||||+++.+ +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 4544444455543
No 336
>PTZ00301 uridine kinase; Provisional
Probab=94.49 E-value=0.045 Score=56.62 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999998876
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.17 Score=62.64 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=70.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCC--CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADD--GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
..++|-++.+..|.+.+......... ..-.+.+.|+.|+|||-||++++. -+-+..+..+-++.++ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 45788888899999888654421112 455778899999999999999986 2322223333333332 222
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcc-eEeecCCCccCHhhHhhhccCCC
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKI-LLVLDDVWNENYENWSILSRPFG 318 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~~~~~~~~~~~~l~ 318 (1276)
+.+.++.+..... .+....|.+.++.++| +|.||||.-.+.+....+...+.
T Consensus 633 vskligsp~gyvG---~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG---KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred hhhccCCCccccc---chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 2222232221111 1223356677777776 66679996666655554444443
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.43 E-value=0.21 Score=57.64 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+.++.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988876
No 339
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.43 E-value=0.21 Score=53.45 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=34.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
....++.|.|.+|+|||++|.++... .-..-..++||+..+ +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~--~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEEeeC--CHHHHHHH
Confidence 45679999999999999999988752 223345688888765 34444444
No 340
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.38 E-value=0.17 Score=54.50 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=66.0
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI 273 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 273 (1276)
..+.+...+... ....-++|+|+.|.||||+.+.++.. +. .....+++.- ......+...++......-..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECC-EEeecchhHHHHHHHhccccc
Confidence 344455555432 23567999999999999999999873 22 2223333311 000000111233222211110
Q ss_pred -C------CCCcHHHHHHHHHHHh-cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhh
Q 037340 274 -K------DDDDLNSLQVKLKKQL-SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAE 337 (1276)
Q Consensus 274 -~------~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 337 (1276)
. ..++... ...+...+ ...+=++++|.+.. .+.+..+...+. .|..||+||.+..+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0 0111111 11222222 24678999999843 455555555442 4778999998766643
No 341
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.37 E-value=0.29 Score=50.75 Aligned_cols=207 Identities=16% Similarity=0.214 Sum_probs=109.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcch----hhhcccccEEEEEEcCC---------
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDD----RVQRHFQIKAWTCVSED--------- 254 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~~~~--------- 254 (1276)
+.++++....+..... .+..+...++|+.|.||-|.+..+.+.- -.+-+-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5677777777766653 2457889999999999988776665421 01112233445433222
Q ss_pred -C-----------CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC-Ccc-eEeecCCCccCHhhHhhhccCCCCC
Q 037340 255 -F-----------DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG-KKI-LLVLDDVWNENYENWSILSRPFGVG 320 (1276)
Q Consensus 255 -~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlvlDdv~~~~~~~~~~~~~~l~~~ 320 (1276)
. ..+-+.++++.++..... + ..++ +.| ++|+-.+..-..+.-..+..-....
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q------------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ------------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY 154 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc------------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHHH
Confidence 1 112333344443332211 0 0012 234 5566655443334444444434334
Q ss_pred CCCcEEEEEecc-hhhhhhcCC-CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 037340 321 APGSKIVVTTRN-LGVAESMGV-DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLG 397 (1276)
Q Consensus 321 ~~gs~ilvTtr~-~~v~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 397 (1276)
...+|+|+.-.+ ..+-..+.. --.+++...+++|....+.+..-..+- . -| .+++.+|+++++|.-- |+-++-
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~-lp--~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-Q-LP--KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-c-Cc--HHHHHHHHHHhcccHHHHHHHHH
Confidence 456777764332 111111111 124788899999999998877644332 1 12 6899999999998653 443333
Q ss_pred HH-hcCCC--------ChhHHHHHHhhhcc
Q 037340 398 GL-LRGRD--------DPRDWEFVLNTDIW 418 (1276)
Q Consensus 398 ~~-l~~~~--------~~~~w~~~l~~~~~ 418 (1276)
.. +.+.+ ..-+|+.++.+...
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHH
Confidence 22 22211 14579888766443
No 342
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.34 E-value=0.057 Score=59.22 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++.++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999983
No 343
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.34 E-value=0.17 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.9
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+...+|+|.|+.|.|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 344
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.32 E-value=0.03 Score=53.44 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037340 216 ISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~ 236 (1276)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 345
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.25 E-value=0.11 Score=58.42 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=49.5
Q ss_pred CeeecchhhHHHHHHHHhcC--------CCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEc-C
Q 037340 186 AKVYGREKDKEAIVELLLRD--------DLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVS-E 253 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~-~ 253 (1276)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||++|+.++. .....| +...++..+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCCcc
Confidence 45889888888887666531 000112346789999999999999999987 333333 222222221 2
Q ss_pred CCCHHHHHHHHHHHh
Q 037340 254 DFDVSRVTKSILRSI 268 (1276)
Q Consensus 254 ~~~~~~~~~~i~~~l 268 (1276)
..+.+++++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665544
No 346
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.36 Score=53.79 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=53.9
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 289 (1276)
.+.+++.|+|+.|+||||++..++.. ....-..+.+|+..... ...+-++...+.++.+.. ...+..++.+.+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHH
Confidence 34689999999999999999988863 22222345566654322 223444555555544322 234555665555443
Q ss_pred hc-CCcceEeecCCCc
Q 037340 290 LS-GKKILLVLDDVWN 304 (1276)
Q Consensus 290 l~-~kr~LlvlDdv~~ 304 (1276)
-. +..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3456888887744
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.23 E-value=0.17 Score=57.59 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=51.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhc--ccccEEEEEEcCCCCH--HHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQR--HFQIKAWTCVSEDFDV--SRVTKSILRSIADDQIKDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1276)
..++|.++|+.|+||||.+..++....... +-..+..+++. .+.. .+-++..++.++.+.. .....+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 357999999999999999988886322211 11234444443 3332 2234555555554332 3334455555554
Q ss_pred HHhcCCcceEeecCCCc
Q 037340 288 KQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 288 ~~l~~kr~LlvlDdv~~ 304 (1276)
+. .+.-+|++|.+..
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888998844
No 348
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.22 E-value=0.033 Score=57.53 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
||+|.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 349
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.22 E-value=0.032 Score=46.03 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=19.2
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|..|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 350
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.17 E-value=0.064 Score=67.08 Aligned_cols=187 Identities=16% Similarity=0.115 Sum_probs=83.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC--CCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI--KDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l 290 (1276)
.++++|+|+.|.||||+.+.+.-.. +. .....+|.+...... ..+..+...++.... ........-...+...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887531 11 111222222211000 001111111111000 00011111111222233
Q ss_pred c--CCcceEeecCCCc-cCHhhHhhh----ccCCCCCCCCcEEEEEecchhhhhhcCCCCceecCCCChh-hHHHhhhhc
Q 037340 291 S--GKKILLVLDDVWN-ENYENWSIL----SRPFGVGAPGSKIVVTTRNLGVAESMGVDPAYQLKELSND-DCLCVLTQI 362 (1276)
Q Consensus 291 ~--~kr~LlvlDdv~~-~~~~~~~~~----~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~l~~~~ 362 (1276)
. .++-|+++|+.-. .+..+...+ ...+. ..|+.+|+||....+.........+....+.-+ +... +...
T Consensus 398 ~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Yk 474 (771)
T TIGR01069 398 SKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYK 474 (771)
T ss_pred HhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEE
Confidence 2 4789999999854 223333323 22222 257899999998776543221111111111100 1111 1111
Q ss_pred ccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHh
Q 037340 363 SLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLN 414 (1276)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 414 (1276)
. ..+. + -...|-.|++++ |+|-.|.--|..+... ...+...++.
T Consensus 475 l-~~G~--~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 475 L-LKGI--P---GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred E-CCCC--C---CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1 1111 1 124577787776 7888777777766543 2234444433
No 351
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.15 E-value=0.16 Score=53.41 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 352
>PRK06547 hypothetical protein; Provisional
Probab=94.15 E-value=0.059 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999863
No 353
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.17 Score=51.49 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|..|.|||||++.++.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999986
No 354
>PRK05439 pantothenate kinase; Provisional
Probab=94.08 E-value=0.24 Score=54.29 Aligned_cols=82 Identities=21% Similarity=0.140 Sum_probs=44.3
Q ss_pred CCCccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHH
Q 037340 210 DDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLK 287 (1276)
Q Consensus 210 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 287 (1276)
....-+|+|.|.+|+||||+|+.+.. ...... ..+.-++...-+-..+.+..- ..+........-+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 34567999999999999999998876 332221 233444443332222222110 0111111113456666777676
Q ss_pred HHhcCCc
Q 037340 288 KQLSGKK 294 (1276)
Q Consensus 288 ~~l~~kr 294 (1276)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 355
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.03 E-value=0.26 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999876
No 356
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.03 E-value=0.5 Score=50.20 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
..+.+.|+|+.|+|||+-++++++. .+..+-+..+..+....+...+........ ..........+...+.
T Consensus 93 ~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~---~~~~~d~~~~~~~~l~ 163 (297)
T COG2842 93 TGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT---DGTINDLTERLMIRLR 163 (297)
T ss_pred cCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHc
Confidence 3458899999999999999999873 223334566677777777777766665543 3445556666667778
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGV 319 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~ 319 (1276)
+..-+|+.|+...-.....+.+......
T Consensus 164 ~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 164 DTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred cCcceeeeehhhccChHHHHHHHHHHHh
Confidence 8889999999876666667766654443
No 357
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.01 E-value=0.043 Score=53.51 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999885
No 358
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.00 E-value=0.061 Score=58.82 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=43.8
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..|+|.++.++++++.+.......+..-+|+.++|+.|.||||+|+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999765543456778999999999999999998876
No 359
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.99 E-value=0.031 Score=57.17 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=56.1
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhccc--CCCCCcHHHHHHHHHHHhcC
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQ--IKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~l~~ 292 (1276)
++.|+|+.|.||||+.+.+.-.. +..+-...+| ... ... .....++..+.... .........-..++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~--a~~-~~~-~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~ 75 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVP--AES-AEL-PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKN 75 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCee--ehh-eEe-cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHh
Confidence 46899999999999999998432 1112111111 110 000 00001111111100 00111222222334444443
Q ss_pred --CcceEeecCCCcc-CHhhH----hhhccCCCCCCCCcEEEEEecchhhhhhc
Q 037340 293 --KKILLVLDDVWNE-NYENW----SILSRPFGVGAPGSKIVVTTRNLGVAESM 339 (1276)
Q Consensus 293 --kr~LlvlDdv~~~-~~~~~----~~~~~~l~~~~~gs~ilvTtr~~~v~~~~ 339 (1276)
++-++++|+.-.. +..+- ..+...+.. ..++.+|++|.+.++...+
T Consensus 76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 7889999998431 12111 122222221 1367899999988776544
No 360
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.97 E-value=0.23 Score=53.98 Aligned_cols=80 Identities=23% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhccc--ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKK 288 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 288 (1276)
..+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-....+..... ..+.........+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 4567999999999999999987764 222111 123444443322222222211 00111111244566666666666
Q ss_pred HhcCC
Q 037340 289 QLSGK 293 (1276)
Q Consensus 289 ~l~~k 293 (1276)
.-.++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 361
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.97 E-value=0.16 Score=57.07 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=35.8
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|+...++++.+.+..-. .....|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 58899988888888875432 2234578999999999999999985
No 362
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.97 E-value=0.077 Score=53.05 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=27.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhh-cccccEEEEEEcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKAWTCVSE 253 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~ 253 (1276)
..++.+.|+.|+|||.+|+.++. .+. ......+-++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 45788999999999999999987 333 2333444555443
No 363
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.97 E-value=0.043 Score=57.60 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+..+|+|.|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.95 E-value=0.31 Score=55.38 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=47.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC----CCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK----DDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 287 (1276)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ +.-++.++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4569999999999999999999863 3333345677765433 3332 2223344322111 1223344433332
Q ss_pred HHhcCCcceEeecCC
Q 037340 288 KQLSGKKILLVLDDV 302 (1276)
Q Consensus 288 ~~l~~kr~LlvlDdv 302 (1276)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 365
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=1.7 Score=47.71 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=88.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhcch---h---hh--cccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDD---R---VQ--RHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQV 284 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 284 (1276)
.++..++|..|.||+++|..+.+.. . .. .|-+...++.... .....+++.+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---------------------~~i~vd~Ir~ 76 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---------------------KDLSKSEFLS 76 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---------------------CcCCHHHHHH
Confidence 4566699999999999999987631 0 01 1111222221101 1122233332
Q ss_pred HHHHHh-----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhc-CCCCceecCCCChhhHHH
Q 037340 285 KLKKQL-----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESM-GVDPAYQLKELSNDDCLC 357 (1276)
Q Consensus 285 ~l~~~l-----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~ 357 (1276)
.+.+.- .+++=++|+||+..........+...+.....++.+|++|.+ ..+...+ .-.+.+++.++++++..+
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 222221 246778889998666656677777777666667777766644 3443332 235679999999999987
Q ss_pred hhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 358 VLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
.+.... . + ++.+..++...+|.--|+..+
T Consensus 157 ~l~~~~---~----~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 157 KLLSKN---K----E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHcC---C----C---hhHHHHHHHHcCCHHHHHHHH
Confidence 776531 1 1 244566666667633455543
No 366
>PTZ00035 Rad51 protein; Provisional
Probab=93.86 E-value=0.35 Score=54.31 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=39.5
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhh----cccccEEEEEEcCCCCHHHHHHHHHHHhh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKAWTCVSEDFDVSRVTKSILRSIA 269 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1276)
....++.|+|.+|+||||++..++-..... ..=..++|++....++.+++ .++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 456799999999999999999887532211 11235679988877777764 44455443
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.83 E-value=0.3 Score=51.26 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=67.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchh-hhc---cc----------ccEEEEEE----cCCC--CH---------------
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDR-VQR---HF----------QIKAWTCV----SEDF--DV--------------- 257 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~---~f----------~~~~wv~~----~~~~--~~--------------- 257 (1276)
..+++|+|+.|.|||||.+.+.--.. .+. .| ..+.||.= ...| ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 47899999999999999999986211 000 01 12445431 1111 11
Q ss_pred -------HHHHHHHHHHhhcccC----CCC-CcHHHHHHHHHHHhcCCcceEeecCCCc----cCHhhHhhhccCCCCCC
Q 037340 258 -------SRVTKSILRSIADDQI----KDD-DDLNSLQVKLKKQLSGKKILLVLDDVWN----ENYENWSILSRPFGVGA 321 (1276)
Q Consensus 258 -------~~~~~~i~~~l~~~~~----~~~-~~~~~~~~~l~~~l~~kr~LlvlDdv~~----~~~~~~~~~~~~l~~~~ 321 (1276)
.+...+.++.++...- -.. ..-+.-.-.|.+.|..+.=|++||.--. ......-.+...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 1333444444433211 011 1222233456788888999999997422 222333344444433
Q ss_pred CCcEEEEEecchhhhhh
Q 037340 322 PGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~ 338 (1276)
.|..|+++|-+-.....
T Consensus 188 eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 188 EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCCEEEEEeCCcHHhHh
Confidence 38899999998655443
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.82 E-value=0.048 Score=57.04 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+...+|+|+|++|+||||||+.+..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 369
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.79 E-value=0.14 Score=57.79 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCeeecchhhHHHHHHHHhcC--------CCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEc-
Q 037340 185 EAKVYGREKDKEAIVELLLRD--------DLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVS- 252 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~- 252 (1276)
+..++|.++.++.+..++... ........+.|.++|++|+|||++|+.+... ....| +...|...+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gy 91 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGY 91 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCc
Confidence 346889999999988887541 0001112467899999999999999999873 33333 222222211
Q ss_pred CCCCHHHHHHHHHHHh
Q 037340 253 EDFDVSRVTKSILRSI 268 (1276)
Q Consensus 253 ~~~~~~~~~~~i~~~l 268 (1276)
...+.+...+.+.+..
T Consensus 92 vG~d~e~~ir~L~~~A 107 (443)
T PRK05201 92 VGRDVESIIRDLVEIA 107 (443)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 2235566666665554
No 370
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.78 E-value=0.24 Score=53.65 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=31.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
....++.|.|.+|+|||++|.+++.. ....=..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC
Confidence 34679999999999999999998763 2222346788887643
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.75 E-value=0.35 Score=52.11 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=46.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
..+++++|.+|+||||++..+... ....=..+.+++..... ...+-++...+.++.+.. ...+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 478999999999999999988763 22221234455543221 111222222333322211 22344445544443322
Q ss_pred -CCcceEeecCCCc
Q 037340 292 -GKKILLVLDDVWN 304 (1276)
Q Consensus 292 -~kr~LlvlDdv~~ 304 (1276)
.+.=++++|..-.
T Consensus 152 ~~~~D~ViIDt~Gr 165 (270)
T PRK06731 152 EARVDYILIDTAGK 165 (270)
T ss_pred cCCCCEEEEECCCC
Confidence 2456888898744
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.75 E-value=0.35 Score=55.51 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|.++|+.|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988876
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.74 E-value=0.27 Score=51.08 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998874
No 374
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.72 E-value=0.16 Score=51.45 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|++|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999987
No 375
>PRK06762 hypothetical protein; Provisional
Probab=93.64 E-value=0.049 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|.|+|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 376
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.62 E-value=0.18 Score=61.94 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=57.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1276)
...+++-|+|.+|+||||||.+++.. ....=..++|+...+.++.. .+++++.+.. ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45689999999999999999887652 22333567899888877743 5555554321 1233445555556
Q ss_pred HHHhcC-CcceEeecCCC
Q 037340 287 KKQLSG-KKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l~~-kr~LlvlDdv~ 303 (1276)
...++. +--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 665543 55689999983
No 377
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.60 E-value=0.18 Score=63.47 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=71.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
..++|+...++++.+.+..-. .....|.|+|..|+|||++|+.+++.... .-...+.+++..-. ...+-..+.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhhc
Confidence 368999998888877765321 22346789999999999999999873211 11233444444321 111111121
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC-----------CCCcEEEEEecc
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG-----------APGSKIVVTTRN 332 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtr~ 332 (1276)
....+... ... ......+ -....=.|+||||..-.......+...+..+ ..+.|||.||..
T Consensus 449 g~~~~~~~-g~~--~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 449 GHERGAFT-GAS--AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred Cccccccc-ccc--cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111100 000 0111111 1223457999999765555555554444221 134588888864
No 378
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.59 E-value=0.099 Score=63.43 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=55.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+.. ...+++..+|... ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 46899999888888877432 468899999999999999998732 2334677888766 3346677777777
Q ss_pred HHhhc
Q 037340 266 RSIAD 270 (1276)
Q Consensus 266 ~~l~~ 270 (1276)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.53 E-value=0.24 Score=49.62 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=60.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC---CCHHHHHHHHHHHh-----hccc--C--CCCCc--
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED---FDVSRVTKSILRSI-----ADDQ--I--KDDDD-- 278 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~--~--~~~~~-- 278 (1276)
...|-|+|-.|-||||.|....- +...+=..+..+.+-+. ......+..+ ..+ +... . ....+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 46789999999999999987775 33333333444444332 2333333321 011 0000 0 00011
Q ss_pred -HHHHHHHHHHHhcC-CcceEeecCCCcc---CHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 279 -LNSLQVKLKKQLSG-KKILLVLDDVWNE---NYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 279 -~~~~~~~l~~~l~~-kr~LlvlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
....-+..++.+.+ +-=++|||.+-.. ..-..+++...+.....+..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11222334455544 4459999998221 1122344444444444677999999984
No 380
>PHA00729 NTP-binding motif containing protein
Probab=93.53 E-value=0.08 Score=54.65 Aligned_cols=24 Identities=46% Similarity=0.483 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+...|.|.|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999987
No 381
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.52 E-value=0.045 Score=50.33 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=18.5
Q ss_pred EEEEecCCChHHHHHHHHhcchhhhcccc
Q 037340 216 ISINGMGGVGKTTLAQLVYNDDRVQRHFQ 244 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 244 (1276)
|-|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4555664
No 382
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.50 E-value=0.24 Score=55.64 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=32.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 188 VYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 188 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|+...++++.+.+..-. .....|.|+|..|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHH
Confidence 3677777777777665432 2234578999999999999999986
No 383
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.49 E-value=0.089 Score=54.41 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=59.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC--CCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI--KDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~l 290 (1276)
.+++.|.|+.|.||||+.+.+.... +..+ ...+|.+.. . .-.+...|...+..... ........-..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~-~-~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY-A-TLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh-c-CccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999887531 1111 112222111 0 01122223222222111 01111111111222222
Q ss_pred --cCCcceEeecCCCcc-CHhh----HhhhccCCCCCCCCcEEEEEecchhhhhhcC
Q 037340 291 --SGKKILLVLDDVWNE-NYEN----WSILSRPFGVGAPGSKIVVTTRNLGVAESMG 340 (1276)
Q Consensus 291 --~~kr~LlvlDdv~~~-~~~~----~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~ 340 (1276)
..++-|+++|+.... +..+ ...+...+.. .|+.+|++|-+.+++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356789999997331 1211 1122223322 3789999999988877654
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.49 E-value=0.33 Score=55.64 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=44.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+++++|+.|+||||++..++.........+.+.++.... .....+-+....+.++.+.. ...+..+....+. .+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~-~v~~~~dl~~al~-~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR-SIKDIADLQLMLH-EL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee-cCCCHHHHHHHHH-Hh
Confidence 457999999999999999988876321121223344444322 12223334444444443322 2233333333332 23
Q ss_pred cCCcceEeecCC
Q 037340 291 SGKKILLVLDDV 302 (1276)
Q Consensus 291 ~~kr~LlvlDdv 302 (1276)
+++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 433 45666665
No 385
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.49 E-value=0.12 Score=52.32 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 386
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.41 E-value=0.048 Score=57.32 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=80.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC--CCCCcHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI--KDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~ 289 (1276)
..+++.|.|+.|.||||+.+.+... .+ .+....+|.+... .......++..++.... ........-...+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~-~~--la~~g~~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI-VL--MAQIGCFVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH-HH--HHHhCCCcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4579999999999999999887742 11 1111122322210 00111222222221111 0111222222233334
Q ss_pred h--cCCcceEeecCC---Ccc-CH--hhHhhhccCCCCCCCCcEEEEEecchhhhhhcCCCC---ceecCCCChh--hHH
Q 037340 290 L--SGKKILLVLDDV---WNE-NY--ENWSILSRPFGVGAPGSKIVVTTRNLGVAESMGVDP---AYQLKELSND--DCL 356 (1276)
Q Consensus 290 l--~~kr~LlvlDdv---~~~-~~--~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~---~~~l~~L~~~--~~~ 356 (1276)
+ -..+-|+++|.. .+. +. ..|..+ ..+.. ..|+.+|+||-..++...+.... ..++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 4 356889999998 221 11 122221 22221 24778999998766654332111 1222111111 211
Q ss_pred HhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhc
Q 037340 357 CVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLR 401 (1276)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~ 401 (1276)
. |..... .+. .-...|-.+++++ |+|-.+.--|..+.
T Consensus 182 ~-~~Y~l~-~G~-----~~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 182 T-MLYKVE-KGA-----CDQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred e-EEEEEe-eCC-----CCCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 1 222211 111 0124566777666 88888877766554
No 387
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.38 E-value=0.066 Score=55.45 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=27.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc--------ccEEEEEEcCC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF--------QIKAWTCVSED 254 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 254 (1276)
..++.|.|++|+||||++.++.........| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3588999999999999999988753322222 25677766655
No 388
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.69 Score=54.92 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=82.4
Q ss_pred cCCeeecchhhHHHHHH---HHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 184 NEAKVYGREKDKEAIVE---LLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~---~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
.-.++.|.++.++++.+ .|.....- +..-++-|.++|++|.|||.||++++....+ .| .+.|..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch---
Confidence 34567898876665555 45432210 1234667899999999999999999985333 23 112211
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc----------CHhhH----hhhccCCCCCC--
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE----------NYENW----SILSRPFGVGA-- 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~----------~~~~~----~~~~~~l~~~~-- 321 (1276)
++++.+- ........+...+..+.-++.|++|.++.. ..+++ .++..-...++
T Consensus 218 -----~FVemfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 -----DFVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred -----hhhhhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 1112211 112223344445555566789998877321 11223 33333333333
Q ss_pred CCcEEEEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhcc
Q 037340 322 PGSKIVVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.|-.|+..|-.++|.+.. .-++.+.++..+-..-.++++-++
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 343444445445554321 123456666555555566666444
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.36 E-value=0.12 Score=48.61 Aligned_cols=40 Identities=28% Similarity=0.238 Sum_probs=28.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 193 KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
++.+++.+.+...- ....+|.+.|.-|.||||+++.++..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34455555553221 23468999999999999999999974
No 390
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.24 E-value=0.2 Score=57.46 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=48.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhc-----ccCCCCCcHHH-----
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIAD-----DQIKDDDDLNS----- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~----- 281 (1276)
....++|+|..|+|||||++.+.... .....++|..-.+..++.++....+..... -...+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34679999999999999999888632 122234444332344555544444433211 11111111111
Q ss_pred HHHHHHHHh--cCCcceEeecCC
Q 037340 282 LQVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 282 ~~~~l~~~l--~~kr~LlvlDdv 302 (1276)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 589999999999
No 391
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.24 E-value=0.26 Score=48.78 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.0
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.|.+.|.+|+||||+|+++++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 4678899999999999999987
No 392
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.18 E-value=0.082 Score=55.59 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=18.9
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037340 216 ISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~ 235 (1276)
|.|.|++|+||||+|+.+++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999986
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.18 E-value=0.053 Score=49.50 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 037340 216 ISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~~ 236 (1276)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998873
No 394
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.57 Score=47.59 Aligned_cols=52 Identities=29% Similarity=0.197 Sum_probs=37.0
Q ss_pred CCeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-.++=|.+-.++++.+...-.-. -+-+.++-|.++|++|.|||.||++|+++
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34566788888877776522100 02245677889999999999999999984
No 395
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.17 E-value=0.3 Score=51.28 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHhhhhhHHHH
Q 037340 12 SVELLIEKLASQGLELFKRHKKLKADFIKWKGMLEMIQAVLADA-EDRQTREKSVKMWLDNLQNLAYDAEDVLDEF 86 (1276)
Q Consensus 12 ~~~~l~~kl~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~~~~~~~~~wl~~lr~~ayd~ed~ld~~ 86 (1276)
.++.++..|........-...-++.+++-++.+++.+|.||+.- ++....-+....++.++-..||++|+++|-.
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehh
Confidence 45666666666644333334456899999999999999999986 4323333348999999999999999999975
No 396
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.17 E-value=0.55 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 397
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.16 E-value=0.19 Score=52.09 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=49.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhccc------CCCCCcHHH----
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQ------IKDDDDLNS---- 281 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~---- 281 (1276)
..-++|.|.+|+|||+|+.++.++. . -+.++++-+++.. .+.++.+++...-.... ........+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~--~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ--D--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC--T--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc--c--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 4568999999999999999998743 1 2344777776553 44455555533311100 001111111
Q ss_pred -----HHHHHHHHhcCCcceEeecCC
Q 037340 282 -----LQVKLKKQLSGKKILLVLDDV 302 (1276)
Q Consensus 282 -----~~~~l~~~l~~kr~LlvlDdv 302 (1276)
..+.++. +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 1222333 699999999999
No 398
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.15 E-value=0.44 Score=54.65 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=36.0
Q ss_pred CCeeecchhhHHHHHHHHhc------C--CCCCC----CCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLR------D--DLRAD----DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~------~--~~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..++|.++.++.+...+.. . ....+ -....|.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 45789999999888765521 0 00000 1135789999999999999999986
No 399
>PRK04328 hypothetical protein; Provisional
Probab=93.13 E-value=0.27 Score=52.93 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
....++.|.|.+|+|||++|.++... ....-..++|++..+.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeCC
Confidence 34679999999999999999998763 2233456788887664
No 400
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.12 E-value=0.76 Score=44.19 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHhhcccC-----CCCCcHHHHHHHHHHHhcCCcceEeecCCCc----cCHhhHhhhccCCCCCCCCcE
Q 037340 255 FDVSRVTKSILRSIADDQI-----KDDDDLNSLQVKLKKQLSGKKILLVLDDVWN----ENYENWSILSRPFGVGAPGSK 325 (1276)
Q Consensus 255 ~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~----~~~~~~~~~~~~l~~~~~gs~ 325 (1276)
.+.....+..+++++.... ..-..-++-.-.|.+.+...+-+++-|.--. ..-+...++.-.+ ....|..
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~T 199 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTT 199 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCce
Confidence 3455666777777765432 1333445556678888888888999886522 2223333333333 2347889
Q ss_pred EEEEecchhhhhhcC
Q 037340 326 IVVTTRNLGVAESMG 340 (1276)
Q Consensus 326 ilvTtr~~~v~~~~~ 340 (1276)
.++.|.++.+|.+|.
T Consensus 200 lVlVTHD~~LA~Rc~ 214 (228)
T COG4181 200 LVLVTHDPQLAARCD 214 (228)
T ss_pred EEEEeCCHHHHHhhh
Confidence 999999999998874
No 401
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.11 E-value=0.13 Score=52.17 Aligned_cols=42 Identities=31% Similarity=0.354 Sum_probs=26.9
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
.|+|+|-||+||||+|..+... -...+-..+.-|....++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCCh
Confidence 5899999999999999885542 12222123444555555544
No 402
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.08 E-value=0.43 Score=49.13 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|..|.|||||++.++.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999985
No 403
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.08 E-value=0.33 Score=58.48 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=38.5
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...++|+...++++.+.+..-. .....|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 3568999999999888886532 23346789999999999999999873
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.07 E-value=0.075 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 405
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.06 E-value=0.25 Score=56.06 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.6
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999998864
No 406
>PRK03839 putative kinase; Provisional
Probab=93.02 E-value=0.067 Score=54.56 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 407
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.01 E-value=0.25 Score=48.28 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 408
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.00 E-value=0.57 Score=57.54 Aligned_cols=87 Identities=22% Similarity=0.164 Sum_probs=48.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC--HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD--VSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
.+|++++|+.|+||||.+..++...........+..+... .+. ..+-++...+.++.+.. ...+..++.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 4799999999999999998888732211111234444432 232 33445555555554332 23345555555543 3
Q ss_pred cCCcceEeecCCC
Q 037340 291 SGKKILLVLDDVW 303 (1276)
Q Consensus 291 ~~kr~LlvlDdv~ 303 (1276)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 333 366777663
No 409
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.98 E-value=0.86 Score=47.67 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|.|..|.|||||++.+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 410
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.21 Score=49.52 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=61.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
..+++|+|..|.|||||++.+.... ......+++.-....... .......+.-.. .-..-+...-.+...+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVP--QLSGGQRQRVALARALLL 97 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEe--eCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999998732 223444444321111100 001111111100 011112233345566666
Q ss_pred CcceEeecCCCcc-CHhhHhhhccCCCC-CCCCcEEEEEecchhhhhh
Q 037340 293 KKILLVLDDVWNE-NYENWSILSRPFGV-GAPGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 293 kr~LlvlDdv~~~-~~~~~~~~~~~l~~-~~~gs~ilvTtr~~~v~~~ 338 (1276)
..-++++|+.-.. +......+...+.. ...+..++++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6789999997431 22333333332221 1125678888887666554
No 411
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.96 E-value=0.32 Score=52.43 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC------CCCCcHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI------KDDDDLNSLQV 284 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~ 284 (1276)
.+..+|.|.|.+|.|||||+..+.+ ........ +.+ ..+..+..+ .+.++..+.+.. .-..+...+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~~~-~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM--RLKDSVPC-AVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HhccCCCE-EEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 4688999999999999999999987 33333322 222 222222221 112333322110 01223444555
Q ss_pred HHHHHhcCCcceEeecCCCc
Q 037340 285 KLKKQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 285 ~l~~~l~~kr~LlvlDdv~~ 304 (1276)
.+.......--++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444456788899843
No 412
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.96 E-value=0.21 Score=56.59 Aligned_cols=64 Identities=25% Similarity=0.199 Sum_probs=47.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.++|+++.+..+...+... +.+.+.|.+|+|||+||+.++. ... ...++|.+.......++...
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCc
Confidence 4789888888887777554 3478999999999999999997 333 23466777766666655443
No 413
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.95 E-value=0.18 Score=52.61 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=36.6
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
+..++.+.+... .++..+|+|.|++|+|||||...+....+-+.+=-.++-|.-|.+++--.++-
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 445566666543 24568999999999999999999887433322222333444466666554443
No 414
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.95 E-value=0.29 Score=52.09 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcc-cccEEEEEEcCCCCHHHHHHHHHHHhhcc-------------c-CCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKAWTCVSEDFDVSRVTKSILRSIADD-------------Q-IKD 275 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------~-~~~ 275 (1276)
....++.|.|.+|+|||++|.++... -... =..++||+..++. .++.+.+. .++.+ . ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45679999999999999999998763 2222 3467787765543 44433322 22210 0 001
Q ss_pred -----CCcHHHHHHHHHHHhcC-CcceEeecCC
Q 037340 276 -----DDDLNSLQVKLKKQLSG-KKILLVLDDV 302 (1276)
Q Consensus 276 -----~~~~~~~~~~l~~~l~~-kr~LlvlDdv 302 (1276)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34667777777776653 4478888987
No 415
>PRK04040 adenylate kinase; Provisional
Probab=92.92 E-value=0.077 Score=54.11 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 416
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=1 Score=45.90 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCcceEeecCCCcc-CHhhHhhhc---cCCCCCCCCcEEEEEecchhhhhhcCCCCce
Q 037340 280 NSLQVKLKKQLSGKKILLVLDDVWNE-NYENWSILS---RPFGVGAPGSKIVVTTRNLGVAESMGVDPAY 345 (1276)
Q Consensus 280 ~~~~~~l~~~l~~kr~LlvlDdv~~~-~~~~~~~~~---~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~ 345 (1276)
+.....|.+.+-=++-+.|||..++- +.+....+. ..+. ..|+-+++.|..+.++..+..+.++
T Consensus 149 EkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 149 EKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 33444555555567779999998441 223333332 2232 3477788888888888877655443
No 417
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.89 E-value=0.67 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 418
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.86 E-value=0.13 Score=55.95 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
+..+++.|+|.+|+|||++|.++.. +.......++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 5668999999999999999999998 55566888999988765
No 419
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.80 E-value=0.82 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++|+|..|.|||||++.+...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999864
No 420
>PRK15453 phosphoribulokinase; Provisional
Probab=92.78 E-value=0.52 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998885
No 421
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.72 E-value=0.65 Score=50.04 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRS 267 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1276)
...++.|.|.+|+|||++|.+++.+. ...+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 44689999999999999999987642 222133567776654 455666665543
No 422
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.72 E-value=0.0077 Score=60.04 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=77.3
Q ss_pred ccccC-cccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCcccc
Q 037340 610 ISKLP-NEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGF 688 (1276)
Q Consensus 610 i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i 688 (1276)
++++| ..|.....-..||++.|++..+-..++.++.|..||++.| .+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 4566778889999999999999899999999999999988 789999999999999999988877 89999999
Q ss_pred CCccccccCCc
Q 037340 689 GKLTCLLTLRR 699 (1276)
Q Consensus 689 ~~L~~L~~L~~ 699 (1276)
+++++++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999988854
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.70 E-value=0.59 Score=54.62 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=45.3
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
..+|++++|+.|+||||++..++.....+..-..+..|.... .....+-++...+.++.... ...+..+....+ ..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L 332 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SEL 332 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hhc
Confidence 347999999999999999999987322221112344554432 12233334444444443322 111112222222 233
Q ss_pred cCCcceEeecCCC
Q 037340 291 SGKKILLVLDDVW 303 (1276)
Q Consensus 291 ~~kr~LlvlDdv~ 303 (1276)
+++ ..+++|-.-
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 343 467777764
No 424
>PRK06217 hypothetical protein; Validated
Probab=92.70 E-value=0.16 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 425
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.70 E-value=0.11 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.5
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...++++|+|..|+|||||++.+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3567999999999999999999987
No 426
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.69 E-value=0.088 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 427
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.63 E-value=0.15 Score=48.96 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=27.2
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE 253 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 253 (1276)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 589999999999999999999842 224455555666655
No 428
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.58 E-value=0.26 Score=56.76 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=35.4
Q ss_pred CCeeecchhhHHHHHHHHhc----CCC------CCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLR----DDL------RADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..++|.+..++.+...+.. ... ...-....+.++|++|+|||++|+.++.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999988888655421 000 0011235689999999999999999986
No 429
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.58 E-value=0.43 Score=53.14 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037340 216 ISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~ 235 (1276)
+++.|++|.||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999986
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.57 E-value=0.13 Score=64.78 Aligned_cols=188 Identities=18% Similarity=0.139 Sum_probs=85.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC--CCCCcHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI--KDDDDLNSLQVKLKKQ 289 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~l~~~ 289 (1276)
..+++.|+|+.+.||||+.+.+.-.. + ......+|++.... .-.++..|...++.... ........-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~-~--maq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAA-L--MAKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHH-H--HHHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 45789999999999999999886421 0 11122233332110 00111111111111110 0111111112222222
Q ss_pred hc--CCcceEeecCCCc-cCHhhHhhh----ccCCCCCCCCcEEEEEecchhhhhhcCCCCceecCCCC-hhhHHHhhhh
Q 037340 290 LS--GKKILLVLDDVWN-ENYENWSIL----SRPFGVGAPGSKIVVTTRNLGVAESMGVDPAYQLKELS-NDDCLCVLTQ 361 (1276)
Q Consensus 290 l~--~kr~LlvlDdv~~-~~~~~~~~~----~~~l~~~~~gs~ilvTtr~~~v~~~~~~~~~~~l~~L~-~~~~~~l~~~ 361 (1276)
+. ..+-|+++|..-. .+..+-..+ ...+. ..|+.+|+||.+.++.........+....+. ..+......+
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~~~Yk 479 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEETLRPTYR 479 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCcEEEE
Confidence 22 4778999999854 222222222 22222 2478999999998776654322211111110 1111111111
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHh
Q 037340 362 ISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLN 414 (1276)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~ 414 (1276)
... +. + -...|-.|++++ |+|-.|.--|..+... +......++.
T Consensus 480 l~~--G~--~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 480 LLI--GI--P---GKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred Eee--CC--C---CCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 111 11 0 124577777777 7888777777766544 2234444443
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.55 E-value=0.66 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999873
No 432
>COG4240 Predicted kinase [General function prediction only]
Probab=92.54 E-value=0.73 Score=46.38 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=54.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhccc-ccEEEEEEcCCCCHHHHHHHHHHHhhc----ccCCCCCcHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF-QIKAWTCVSEDFDVSRVTKSILRSIAD----DQIKDDDDLNSLQVK 285 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~~ 285 (1276)
+++-+++|.|+-|+||||+|..+++. ..... ..++..+..+-+-..+-...++++... .......+..-+...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~--L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRL--LAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHH--HHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 45779999999999999999999984 33333 455665555444444444455555321 122255677777888
Q ss_pred HHHHhcCCcc
Q 037340 286 LKKQLSGKKI 295 (1276)
Q Consensus 286 l~~~l~~kr~ 295 (1276)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 8888877643
No 433
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.53 E-value=0.14 Score=52.38 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=27.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEE
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTC 250 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 250 (1276)
.++|.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999987 4555664444443
No 434
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.51 E-value=2.5 Score=46.97 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=33.1
Q ss_pred ceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 344 AYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 344 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
++++++++.+|+..++...+...-- ......+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999876643321 111333455666666778988543
No 435
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.46 E-value=0.07 Score=29.88 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=4.5
Q ss_pred cceeeccCCccccc
Q 037340 623 LRFLNLSGTSIQFL 636 (1276)
Q Consensus 623 Lr~L~L~~~~i~~l 636 (1276)
|+.|+|++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 34444444443333
No 436
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.45 E-value=0.75 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++|.|..|.|||||.+.++.-
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 437
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.45 E-value=0.29 Score=59.56 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=38.5
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
....++|....++++.+.+..-. .....|.|+|..|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34579999999999988875432 22345679999999999999999873
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.43 E-value=0.57 Score=49.67 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=31.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 264 (1276)
...++.|.|.+|+||||+|.++.... .+.. ..+++++. ..+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 35699999999999999987766531 1222 34566653 33455555555
No 439
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.40 E-value=0.42 Score=51.02 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=53.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhh--hcccccEEEEEEcCCC-CHHHHHHHHHHHhhccc------CCCCCcHHH-
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRV--QRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQ------IKDDDDLNS- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~- 281 (1276)
+..-++|.|-.|+|||+|+.++.++..+ +.+-+.++++-+++.. ...++..++.+.=.... ........+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456799999999999999998875321 1223567777777654 44555555544311110 001111111
Q ss_pred ----HHHHHHHHh--c-CCcceEeecCC
Q 037340 282 ----LQVKLKKQL--S-GKKILLVLDDV 302 (1276)
Q Consensus 282 ----~~~~l~~~l--~-~kr~LlvlDdv 302 (1276)
..-.+.+++ + ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122244444 3 78999999999
No 440
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.38 E-value=0.079 Score=53.52 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 441
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.099 Score=50.46 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.4
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 037340 215 VISINGMGGVGKTTLAQLVY 234 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~ 234 (1276)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 442
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.37 E-value=0.49 Score=50.48 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=30.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
....++.|.|.+|+||||+|.++... ....-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccCC
Confidence 34579999999999999999987652 2223456788876443
No 443
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.37 E-value=0.55 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999863
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.36 E-value=0.2 Score=55.22 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=33.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+++.+.|.|||||||+|.+.+- ........+.-|+.....+...++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999988654 33333344666766666555554433
No 445
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.34 E-value=0.45 Score=54.41 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=50.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC-HHHHHHHHHHHhhccc------CCCCCcHHHH--
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD-VSRVTKSILRSIADDQ------IKDDDDLNSL-- 282 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~~-- 282 (1276)
....++|+|..|+|||||++.+.... ..+.++.+-+++... +.++..+++..-.... ..+.......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 35679999999999999999998631 124555566665543 3445555433311110 0011111111
Q ss_pred ---HHHHHHHh--cCCcceEeecCC
Q 037340 283 ---QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 283 ---~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++++|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 12233444 689999999999
No 446
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.29 E-value=0.83 Score=52.55 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhccc------CCCCCcH-----H
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQ------IKDDDDL-----N 280 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~-----~ 280 (1276)
....++|+|..|+|||||++.++..... ...++...-.+...+.+.++..+..-+... ..+.... .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4568899999999999999999874321 112222222233556666665554422110 0011111 1
Q ss_pred HHHHHHHHHh--cCCcceEeecCCCccCHhhHhhh---ccCCCCCCCCcEEEEEecchhhhhhc
Q 037340 281 SLQVKLKKQL--SGKKILLVLDDVWNENYENWSIL---SRPFGVGAPGSKIVVTTRNLGVAESM 339 (1276)
Q Consensus 281 ~~~~~l~~~l--~~kr~LlvlDdv~~~~~~~~~~~---~~~l~~~~~gs~ilvTtr~~~v~~~~ 339 (1276)
.....+.+++ +++.+|+++||+-.- .+...++ ....+. .|--..+.|....+..+.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~-a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF-ADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH-HHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 1122233333 589999999999331 1122222 222232 254455555555555544
No 447
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.27 E-value=0.11 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 448
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.26 E-value=0.087 Score=57.18 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.7
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+-+.++|+.|+|||++++....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 5678999999999999998875
No 449
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.22 E-value=0.1 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
++++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 450
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.20 E-value=0.095 Score=54.41 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=19.9
Q ss_pred cEEEEEecCCChHHHHHHHHh
Q 037340 214 PVISINGMGGVGKTTLAQLVY 234 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~ 234 (1276)
++++|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999987
No 451
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.19 E-value=0.17 Score=53.53 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 196 EAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 196 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++..+.. ..++..+|+|.|.||+|||||...+....+-+.+=-.++=|.-|.+++--.++-+=.
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 345555543 235678999999999999999998887443333333444555577776666554433
No 452
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.12 E-value=0.087 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 453
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.09 E-value=0.25 Score=45.50 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 193 KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.-++.|.+.+... ...++-|++.+|..|+|||-+|+.+++.
T Consensus 36 ~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 36 VVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3444455555433 3456779999999999999999988874
No 454
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.06 E-value=0.24 Score=48.23 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 193 KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+.++++.+++. + ++++++|..|+|||||+..+..+
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45777888882 2 78999999999999999999874
No 455
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.02 E-value=0.091 Score=29.43 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=11.4
Q ss_pred CceEEEEecCccccccC
Q 037340 598 PRLRVFSLRGYCISKLP 614 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp 614 (1276)
++|+.|+|++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46899999999998876
No 456
>PF13245 AAA_19: Part of AAA domain
Probab=92.02 E-value=0.25 Score=41.51 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=17.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++.|.|++|.|||+++.+...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46788899999999955544443
No 457
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.01 E-value=0.12 Score=49.25 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.6
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999887765
No 458
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.00 E-value=0.092 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
||.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 459
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.98 E-value=0.54 Score=54.00 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=47.3
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhccc------CCCCCcHHHH--
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQ------IKDDDDLNSL-- 282 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~-- 282 (1276)
....++|+|..|+|||||++.+..... . +..+.+.+.+ .-.+.++..+.+..-.... ..+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999998887321 1 2222233333 3334444444433321110 1111111111
Q ss_pred ---HHHHHHHh--cCCcceEeecCC
Q 037340 283 ---QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 283 ---~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 12234444 689999999999
No 460
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.97 E-value=0.57 Score=54.05 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=51.5
Q ss_pred CccEEEEEecCCChHHHHH-HHHhcchhhh-----cccccEEEEEEcCCCCHHHHHHHHHHHhhc-cc------CCCCCc
Q 037340 212 GFPVISINGMGGVGKTTLA-QLVYNDDRVQ-----RHFQIKAWTCVSEDFDVSRVTKSILRSIAD-DQ------IKDDDD 278 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~------~~~~~~ 278 (1276)
+..-++|.|..|+|||+|| ..+.+...+. ++-+.++++-+++......-+.+.+++-+. .. ......
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3456899999999999997 6666643221 233456777787776443334444443321 10 001111
Q ss_pred HHH-----HHHHHHHHh--cCCcceEeecCCC
Q 037340 279 LNS-----LQVKLKKQL--SGKKILLVLDDVW 303 (1276)
Q Consensus 279 ~~~-----~~~~l~~~l--~~kr~LlvlDdv~ 303 (1276)
..+ ..-.+.+++ +++.+|+|+||+.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 111 111223333 6899999999993
No 461
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.95 E-value=0.3 Score=59.62 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=49.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc-ccccEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR-HFQIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++.. ...+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHH
Confidence 56889999888888777432 35669999999999999999973 322 3333333332 233555667777
Q ss_pred HHHhhc
Q 037340 265 LRSIAD 270 (1276)
Q Consensus 265 ~~~l~~ 270 (1276)
+..++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 776654
No 462
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=4.4 Score=41.71 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=37.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+++=|-+..++++++.+.-...- +-..++-+..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 45678999999999987432110 123456788999999999999998876
No 463
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.95 E-value=0.69 Score=54.31 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=30.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
...++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc
Confidence 4569999999999999999999873 2222235677776543
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.91 E-value=0.21 Score=53.95 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999986
No 465
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.90 E-value=0.1 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 466
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.88 E-value=0.6 Score=53.93 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=52.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcc------cCCCCCcHHH---
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADD------QIKDDDDLNS--- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 281 (1276)
...-++|.|..|+|||||+.++...... .+=+.++++-+++.. .+.++..++...=... ...+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3456899999999999999998763211 111346666666544 4455555555431111 0111112221
Q ss_pred --HHHHHHHHh---cCCcceEeecCC
Q 037340 282 --LQVKLKKQL---SGKKILLVLDDV 302 (1276)
Q Consensus 282 --~~~~l~~~l---~~kr~LlvlDdv 302 (1276)
..-.+.+++ +++++|+++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 122344555 689999999999
No 467
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=91.87 E-value=4.8 Score=38.76 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHhhhhhH
Q 037340 5 GKAVLSASVELLIEKLASQGLELFKRHKKLKADFIKWKGMLEMIQAVLADAEDRQ-TREKSVKMWLDNLQNLAYDAEDVL 83 (1276)
Q Consensus 5 ~~~~~s~~~~~l~~kl~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~wl~~lr~~ayd~ed~l 83 (1276)
|+.+..||++.+++.+-.............+.-+++|...++.|.-++.+-+.-. .-+..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444445567888999999999999998877642 223333677888899999999999
Q ss_pred HHH
Q 037340 84 DEF 86 (1276)
Q Consensus 84 d~~ 86 (1276)
+.|
T Consensus 83 ~k~ 85 (147)
T PF05659_consen 83 EKC 85 (147)
T ss_pred HHh
Confidence 987
No 468
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.83 E-value=0.11 Score=53.95 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 469
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.81 E-value=0.13 Score=52.54 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999987
No 470
>PRK13947 shikimate kinase; Provisional
Probab=91.79 E-value=0.11 Score=52.40 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 388999999999999999987
No 471
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=3.3 Score=49.82 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=59.8
Q ss_pred CeeecchhhHHHHHHHHhcC----C--CCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRD----D--LRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.++=|-++-+.+|.+-+.-. + ..+-.+..-|.++|++|.|||-+|++|+.. ..- .|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--csL-----~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CSL-----NFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--cee-----eEEeecCH-----
Confidence 35568888888888765320 0 001122446889999999999999999983 322 34555443
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCc
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 304 (1276)
+++... .....+...+...+.=+.++++|.||.+++
T Consensus 740 ---ELLNMY------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMY------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHH------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 122221 122233445555555567899999999954
No 472
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=91.76 E-value=0.49 Score=45.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEc
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVS 252 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 252 (1276)
-+.|+|-||+||+++.+.+|.. -+.+.|...+||+.-
T Consensus 22 K~vivGng~VGKssmiqryCkg-ifTkdykktIgvdfl 58 (246)
T KOG4252|consen 22 KFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFL 58 (246)
T ss_pred EEEEECCCccchHHHHHHHhcc-ccccccccccchhhh
Confidence 4679999999999999999974 344556677887543
No 473
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.71 E-value=0.87 Score=53.52 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=36.1
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
-..++.+.|..+ =....++.|.|.+|+|||||+.+++.. ....-..++|++..+.
T Consensus 79 Gi~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 79 GFGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEES 133 (454)
T ss_pred CcHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCC
Confidence 345555555322 134579999999999999999999763 2222235677765543
No 474
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.63 E-value=0.87 Score=50.41 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=48.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhcc------cCCCCCcHHH---
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADD------QIKDDDDLNS--- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 281 (1276)
....++|+|..|.|||||.+.+..... -+..+..-+.. .-+..++.......-... ...+......
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 346789999999999999999987322 12333344443 334455554444432111 0111111111
Q ss_pred --HHHHHHHHh--cCCcceEeecCC
Q 037340 282 --LQVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 282 --~~~~l~~~l--~~kr~LlvlDdv 302 (1276)
..-.+.+++ ++|.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 111223333 689999999998
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=91.63 E-value=0.52 Score=54.07 Aligned_cols=87 Identities=17% Similarity=0.289 Sum_probs=49.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC-CCCHHHHHHHHHHHhhccc------CCCCCcHH----
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE-DFDVSRVTKSILRSIADDQ------IKDDDDLN---- 280 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 280 (1276)
....++|+|..|+|||||+..++.... -+.++...+.. ..++.++..+......... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 356789999999999999999987322 22333334433 3345555555555322110 10111111
Q ss_pred -HHHHHHHHHh--cCCcceEeecCC
Q 037340 281 -SLQVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 281 -~~~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.....+.+++ ++|++|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233333 589999999999
No 476
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.56 E-value=0.12 Score=49.57 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999987
No 477
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.55 E-value=0.11 Score=50.81 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.50 E-value=0.25 Score=50.06 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=30.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++++|-+..++.+.-.... ..-+.++|.+|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4678888887777666532 35688999999999999998874
No 479
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.50 E-value=0.24 Score=54.87 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=19.8
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
|++.+.|.||+||||+|...+-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6899999999999999977765
No 480
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.50 E-value=0.15 Score=52.74 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|+|++|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 481
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.45 E-value=0.41 Score=55.50 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=53.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhccc------CCCCCcHHH---
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADDQ------IKDDDDLNS--- 281 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~--- 281 (1276)
...-++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++..++...-.... ..+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 345689999999999999999887432 2245667777666544 34455555544211110 101111111
Q ss_pred --HHHHHHHHh---cCCcceEeecCC
Q 037340 282 --LQVKLKKQL---SGKKILLVLDDV 302 (1276)
Q Consensus 282 --~~~~l~~~l---~~kr~LlvlDdv 302 (1276)
..-.+.+++ +++++|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 122344554 389999999999
No 482
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.42 E-value=0.86 Score=55.42 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEcCCCCHHHHHHHHHHHhhcccCCC--CCcHHHHHHHHH
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVSEDFDVSRVTKSILRSIADDQIKD--DDDLNSLQVKLK 287 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~l~ 287 (1276)
.++..|.|.+|.||||++..+... ..... ...+.+......-..++...+...+..-.... ......-..-|.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiH 244 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLH 244 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHH
Confidence 368899999999999999888763 22211 13455555444334444444433221110000 000000011222
Q ss_pred HHhc------------CCc---ceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 288 KQLS------------GKK---ILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 288 ~~l~------------~kr---~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
+.|. +.+ -++|+|++.-.+......+...++ +++|+|+---.
T Consensus 245 rlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 245 RLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred HHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 2221 111 289999985444555566666665 56787775543
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.42 E-value=0.16 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+|+|+|+.|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578999999999999999999873
No 484
>PRK13949 shikimate kinase; Provisional
Probab=91.39 E-value=0.13 Score=51.43 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-|.|+|++|+||||+|+.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 485
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.39 E-value=0.73 Score=42.58 Aligned_cols=20 Identities=60% Similarity=0.918 Sum_probs=18.7
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037340 216 ISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~ 235 (1276)
|.+.|.||+||||++..++.
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 486
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.38 E-value=0.35 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=20.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+|+|.|+.|+||||+++.+++.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 487
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=2.3 Score=50.99 Aligned_cols=49 Identities=24% Similarity=0.241 Sum_probs=36.2
Q ss_pred eeecchhhHHHHHHHHhcCCCCC---CCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRA---DDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++..+..+.+.+.....++ .....++.++|.+|+||||+++.|+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas 453 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVAS 453 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHH
Confidence 34577777777888876543311 12356888999999999999999987
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.26 E-value=0.59 Score=53.73 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=49.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHHhhcc------cCCCCCcHHHH--
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRSIADD------QIKDDDDLNSL-- 282 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~~-- 282 (1276)
....++|+|..|+|||||++.+.... +.+..+++.+++.. .+.+.+.+....=... ...+.......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998732 23445555555443 3334444433210000 00011111111
Q ss_pred ---HHHHHHHh--cCCcceEeecCC
Q 037340 283 ---QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 283 ---~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 12233443 589999999999
No 489
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=91.24 E-value=0.18 Score=49.45 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=24.8
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcc-cccEEEEE
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKAWTC 250 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~ 250 (1276)
|++|+|+.|+||||++..+... .+.. +...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~--l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA--LKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEec
Confidence 5889999999999999999983 3332 44444443
No 490
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.22 E-value=0.19 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.8
Q ss_pred ccEEEEEecCCChHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVY 234 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~ 234 (1276)
...++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999876
No 491
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.21 E-value=0.18 Score=51.32 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999987
No 492
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.19 E-value=1.6 Score=47.40 Aligned_cols=59 Identities=5% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc-hhhhhhc-CCCCceecCCC
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN-LGVAESM-GVDPAYQLKEL 350 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-~~v~~~~-~~~~~~~l~~L 350 (1276)
+++=++|+|++.....+.+..+...+.....++.+|++|.+ ..+...+ +-.+.+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 55568899999777778888888877665567777666665 3443332 12244555544
No 493
>COG4639 Predicted kinase [General function prediction only]
Probab=91.12 E-value=0.14 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=19.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|++.|..|.||+|.|++-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36789999999999999988443
No 494
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.11 E-value=0.15 Score=47.55 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=38.5
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
.+-|.|.|-+|+||||+|.+++.. . ..-|+++++-.....++...-++ ..-..-+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~--~-----~~~~i~isd~vkEn~l~~gyDE~----y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK--T-----GLEYIEISDLVKENNLYEGYDEE----YKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH--h-----CCceEehhhHHhhhcchhccccc----ccCccccHHHHHHHHHHHHhc
Confidence 345789999999999999999852 1 12466665443222222221111 111334555566666655544
No 495
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=0.033 Score=54.91 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=58.1
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCC---CCCCCCCceeEeecCCCCccccccccCCCCCcce
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPE---DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRK 1175 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 1175 (1276)
..++.++-+++.....-.+.+.++++++.|.+.+|..+.+..- .+..++|+.|+|++|+-........+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 4677888877755544345667889999999999997654321 1356899999999998655444444677777777
Q ss_pred EEecC
Q 037340 1176 LKISG 1180 (1276)
Q Consensus 1176 L~Ls~ 1180 (1276)
|.|.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77765
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.05 E-value=0.17 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.+++|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999763
No 497
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.02 E-value=0.18 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|.|.|.+|+||||+|+.++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 498
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=90.99 E-value=0.19 Score=49.37 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999974
No 499
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=90.95 E-value=0.2 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=21.3
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|..|.||||||+.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.93 E-value=0.87 Score=48.31 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=30.3
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
...++.|.|.+|+|||++|.+++.. ....=..++|++....
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEER 55 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCC
Confidence 4579999999999999999998863 2222345777777654
Done!