Query 037340
Match_columns 1276
No_of_seqs 717 out of 5320
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 19:15:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.9E-46 2.7E-50 448.8 23.9 317 189-528 131-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-45 6.5E-50 467.8 26.0 623 590-1275 69-766 (768)
3 3rgz_A Protein brassinosteroid 100.0 4.1E-39 1.4E-43 409.6 28.4 574 598-1252 50-716 (768)
4 1vt4_I APAF-1 related killer D 100.0 9.5E-38 3.2E-42 375.6 24.6 286 187-519 129-436 (1221)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-36 8.7E-41 381.6 35.2 376 781-1253 221-622 (680)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-36 1.1E-40 409.8 25.9 311 184-526 122-452 (1249)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-34 6.6E-39 359.3 27.5 506 598-1262 32-564 (606)
8 1z6t_A APAF-1, apoptotic prote 100.0 4.1E-33 1.4E-37 344.5 35.7 306 185-524 123-450 (591)
9 1ziw_A TOLL-like receptor 3; i 100.0 7E-33 2.4E-37 350.1 35.3 525 598-1250 25-594 (680)
10 3t6q_A CD180 antigen; protein- 100.0 3E-33 1E-37 348.6 29.1 100 599-699 34-136 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-33 1.1E-37 348.3 28.0 503 569-1230 32-558 (606)
12 3t6q_A CD180 antigen; protein- 100.0 4.1E-32 1.4E-36 338.3 28.7 125 569-700 33-161 (606)
13 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-31 2.4E-35 337.5 36.1 505 598-1230 24-560 (844)
14 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-30 1.2E-34 331.1 37.6 510 567-1181 22-557 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.9E-30 6.6E-35 319.2 26.4 468 598-1229 26-509 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 9.7E-30 3.3E-34 312.9 29.4 467 601-1253 8-510 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 6.8E-30 2.3E-34 311.6 24.2 153 1098-1253 323-481 (520)
18 2z63_A TOLL-like receptor 4, v 100.0 5.6E-30 1.9E-34 316.9 21.9 124 569-699 28-156 (570)
19 4ecn_A Leucine-rich repeat pro 100.0 1.4E-29 4.8E-34 317.2 24.0 375 631-1162 435-843 (876)
20 4eco_A Uncharacterized protein 100.0 6E-30 2.1E-34 317.2 20.4 250 630-965 192-468 (636)
21 2z63_A TOLL-like receptor 4, v 100.0 2.7E-29 9.4E-34 310.8 25.1 113 1097-1233 419-534 (570)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-29 2.5E-33 302.5 25.7 270 598-965 21-313 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-28 1.1E-32 306.2 25.7 103 594-698 72-179 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-28 1.5E-32 297.8 25.4 92 601-698 34-127 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-27 3.9E-32 294.1 24.3 100 598-701 52-155 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.3E-27 4.6E-32 282.2 23.7 77 597-685 10-87 (454)
27 4eco_A Uncharacterized protein 100.0 5.3E-28 1.8E-32 299.7 21.1 372 777-1253 201-632 (636)
28 1jl5_A Outer protein YOPM; leu 100.0 4.1E-27 1.4E-31 278.0 25.4 420 614-1229 5-428 (454)
29 4ecn_A Leucine-rich repeat pro 100.0 9.9E-28 3.4E-32 300.5 21.1 37 598-634 323-361 (876)
30 4g8a_A TOLL-like receptor 4; l 99.9 9.9E-27 3.4E-31 292.5 29.2 497 598-1253 52-580 (635)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-24 4.6E-29 256.7 21.7 84 594-684 38-121 (457)
32 1o6v_A Internalin A; bacterial 99.9 3.3E-24 1.1E-28 256.4 25.0 96 597-698 45-140 (466)
33 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-24 1E-28 253.8 17.2 118 564-698 37-154 (457)
34 1o6v_A Internalin A; bacterial 99.9 7.6E-23 2.6E-27 244.6 25.7 344 782-1234 46-391 (466)
35 3v47_A TOLL-like receptor 5B a 99.9 2.7E-23 9.1E-28 248.8 19.3 82 598-679 30-114 (455)
36 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.7E-27 235.9 21.4 99 597-697 44-146 (390)
37 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.5E-26 235.0 26.1 379 788-1234 16-412 (455)
38 4fmz_A Internalin; leucine ric 99.9 4.7E-22 1.6E-26 228.4 20.1 86 595-685 41-126 (347)
39 3oja_B Anopheles plasmodium-re 99.9 5.7E-22 1.9E-26 244.4 21.4 89 597-687 50-141 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 3.3E-20 1.1E-24 223.1 27.1 286 786-1181 15-306 (477)
41 4fmz_A Internalin; leucine ric 99.9 1E-20 3.5E-25 217.2 20.3 305 826-1251 40-344 (347)
42 3o6n_A APL1; leucine-rich repe 99.9 2.5E-21 8.5E-26 226.0 14.8 303 567-965 43-350 (390)
43 2id5_A Lingo-1, leucine rich r 99.8 1.4E-20 4.8E-25 226.3 21.2 98 598-697 32-133 (477)
44 4fcg_A Uncharacterized protein 99.8 1.5E-20 5E-25 212.4 13.0 217 596-908 79-295 (328)
45 3oja_B Anopheles plasmodium-re 99.8 2.7E-20 9.2E-25 229.5 16.3 303 567-965 49-356 (597)
46 1xku_A Decorin; proteoglycan, 99.8 3.4E-19 1.2E-23 202.6 19.9 159 777-964 166-329 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 6.6E-19 2.3E-23 200.2 18.0 154 783-965 173-331 (332)
48 4fcg_A Uncharacterized protein 99.8 2E-19 6.9E-24 203.0 13.5 124 568-698 80-212 (328)
49 1xku_A Decorin; proteoglycan, 99.8 9E-18 3.1E-22 190.8 23.4 284 783-1181 32-329 (330)
50 2ft3_A Biglycan; proteoglycan, 99.8 8.2E-18 2.8E-22 191.2 21.2 281 783-1181 34-330 (332)
51 3ogk_B Coronatine-insensitive 99.8 6.7E-20 2.3E-24 227.5 1.3 84 596-679 110-203 (592)
52 1ogq_A PGIP-2, polygalacturona 99.7 6E-19 2E-23 198.0 7.2 107 592-699 70-181 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.7 1.2E-17 4.1E-22 202.7 19.1 89 598-699 40-128 (622)
54 1ogq_A PGIP-2, polygalacturona 99.7 2.9E-18 1E-22 192.4 10.8 156 1096-1253 146-304 (313)
55 3ogk_B Coronatine-insensitive 99.7 2.8E-19 9.6E-24 221.9 0.2 368 567-1018 110-524 (592)
56 2z80_A TOLL-like receptor 2, v 99.7 3.7E-17 1.3E-21 187.6 15.0 95 600-698 33-130 (353)
57 3g06_A SSPH2 (leucine-rich rep 99.7 7.1E-16 2.4E-20 187.1 26.6 118 1098-1230 180-297 (622)
58 2z66_A Variable lymphocyte rec 99.7 8.5E-17 2.9E-21 180.6 13.3 99 598-698 28-132 (306)
59 3zyj_A Leucine-rich repeat-con 99.7 1.1E-15 3.8E-20 180.9 23.0 129 1097-1228 158-290 (440)
60 1z7x_W Ribonuclease inhibitor; 99.7 3.5E-19 1.2E-23 213.5 -7.7 106 569-679 3-124 (461)
61 2z66_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 178.9 13.7 95 601-699 10-108 (306)
62 3zyi_A Leucine-rich repeat-con 99.7 2.1E-16 7.2E-21 187.8 15.5 221 598-899 75-300 (452)
63 3zyj_A Leucine-rich repeat-con 99.7 4.9E-16 1.7E-20 183.9 16.9 222 598-900 64-290 (440)
64 3zyi_A Leucine-rich repeat-con 99.7 1.2E-15 4.2E-20 181.2 19.7 131 1095-1228 167-301 (452)
65 1z7x_W Ribonuclease inhibitor; 99.7 7.8E-20 2.7E-24 219.2 -16.8 129 1098-1228 255-409 (461)
66 2p1m_B Transport inhibitor res 99.7 1.1E-18 3.9E-23 216.6 -6.9 106 1098-1205 396-518 (594)
67 2z80_A TOLL-like receptor 2, v 99.7 2.4E-16 8.2E-21 180.8 12.5 102 598-701 52-158 (353)
68 2p1m_B Transport inhibitor res 99.6 6.9E-18 2.4E-22 209.6 -2.7 401 565-1017 62-516 (594)
69 3o53_A Protein LRIM1, AGAP0063 99.6 8.7E-17 3E-21 181.0 5.3 135 1096-1233 141-278 (317)
70 3qfl_A MLA10; coiled-coil, (CC 99.6 7.2E-16 2.5E-20 140.1 8.3 79 12-90 2-82 (115)
71 3o53_A Protein LRIM1, AGAP0063 99.6 1.4E-16 4.9E-21 179.2 4.2 251 594-909 30-282 (317)
72 1w5s_A Origin recognition comp 99.6 5.1E-15 1.8E-19 174.1 16.2 313 186-515 22-387 (412)
73 1ozn_A Reticulon 4 receptor; N 99.6 5.3E-15 1.8E-19 163.9 15.2 82 1098-1181 152-235 (285)
74 3oja_A Leucine-rich immune mol 99.6 1.4E-15 4.7E-20 181.4 11.2 236 887-1225 32-270 (487)
75 1ozn_A Reticulon 4 receptor; N 99.6 9E-15 3.1E-19 162.1 16.1 82 598-679 32-116 (285)
76 2qen_A Walker-type ATPase; unk 99.6 3.1E-14 1.1E-18 163.4 20.8 293 184-520 10-349 (350)
77 1wwl_A Monocyte differentiatio 99.6 7.8E-16 2.7E-20 172.7 5.2 149 1099-1251 149-307 (312)
78 1p9a_G Platelet glycoprotein I 99.6 2E-14 6.8E-19 158.7 15.1 100 594-698 6-106 (290)
79 1wwl_A Monocyte differentiatio 99.6 4.9E-15 1.7E-19 166.3 10.2 200 596-840 93-306 (312)
80 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5.2E-19 155.4 13.2 95 599-695 32-130 (239)
81 3oja_A Leucine-rich immune mol 99.6 3E-15 1E-19 178.5 8.3 97 594-699 30-127 (487)
82 2xwt_C Thyrotropin receptor; s 99.6 4.9E-14 1.7E-18 151.4 16.9 152 1098-1253 79-239 (239)
83 3rfs_A Internalin B, repeat mo 99.6 1.4E-14 4.9E-19 158.8 12.9 99 595-697 38-138 (272)
84 2o6q_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 155.1 15.2 94 600-697 18-114 (270)
85 2fna_A Conserved hypothetical 99.5 4E-13 1.4E-17 154.7 22.4 293 184-519 11-356 (357)
86 3rfs_A Internalin B, repeat mo 99.5 8.7E-14 3E-18 152.5 15.3 116 1096-1218 130-247 (272)
87 1h6u_A Internalin H; cell adhe 99.5 2.5E-14 8.4E-19 159.8 10.7 97 597-699 40-136 (308)
88 2z62_A TOLL-like receptor 4, v 99.5 3.5E-14 1.2E-18 156.5 11.7 54 786-841 181-235 (276)
89 1p9a_G Platelet glycoprotein I 99.5 2.6E-13 8.7E-18 149.8 18.4 89 1091-1181 92-182 (290)
90 4ay9_X Follicle-stimulating ho 99.5 1.6E-13 5.5E-18 156.6 15.8 99 602-702 13-114 (350)
91 4ay9_X Follicle-stimulating ho 99.5 1.2E-12 3.9E-17 149.5 22.7 82 933-1017 31-114 (350)
92 2z62_A TOLL-like receptor 4, v 99.5 1E-13 3.5E-18 152.6 12.8 85 598-684 28-115 (276)
93 2o6q_A Variable lymphocyte rec 99.5 1.4E-12 4.8E-17 142.8 20.0 128 1098-1228 84-216 (270)
94 1h6u_A Internalin H; cell adhe 99.4 7.2E-14 2.5E-18 156.0 8.4 192 565-841 37-228 (308)
95 4glp_A Monocyte differentiatio 99.4 2.6E-13 9E-18 152.0 12.3 149 1099-1251 145-305 (310)
96 2ast_B S-phase kinase-associat 99.4 1.3E-14 4.4E-19 165.4 0.1 232 598-911 70-314 (336)
97 4glp_A Monocyte differentiatio 99.4 3.3E-13 1.1E-17 151.3 11.2 105 596-701 89-206 (310)
98 3m19_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 138.2 15.8 95 599-697 15-112 (251)
99 2qby_B CDC6 homolog 3, cell di 99.4 5E-11 1.7E-15 138.4 25.3 289 186-502 20-339 (384)
100 2ca6_A RAN GTPase-activating p 99.4 4.7E-14 1.6E-18 163.9 -0.8 114 564-679 27-170 (386)
101 1h6t_A Internalin B; cell adhe 99.4 7.6E-13 2.6E-17 146.2 9.0 97 596-698 44-140 (291)
102 2v1u_A Cell division control p 99.3 4.7E-11 1.6E-15 138.9 23.9 294 186-502 19-351 (387)
103 2ast_B S-phase kinase-associat 99.3 7.5E-14 2.6E-18 159.1 -0.6 85 932-1020 70-155 (336)
104 4ezg_A Putative uncharacterize 99.3 1.7E-12 6E-17 134.3 9.7 148 1098-1251 43-192 (197)
105 1fnn_A CDC6P, cell division co 99.3 7.8E-11 2.7E-15 137.1 24.5 298 186-503 17-352 (389)
106 3m19_A Variable lymphocyte rec 99.3 1.2E-11 3.9E-16 133.8 15.5 131 1095-1228 55-190 (251)
107 2qby_A CDC6 homolog 1, cell di 99.3 3.7E-11 1.3E-15 139.8 20.1 296 185-502 19-348 (386)
108 1m9s_A Internalin B; cell inva 99.3 1.8E-12 6.2E-17 157.2 8.8 98 595-698 40-137 (605)
109 2ca6_A RAN GTPase-activating p 99.3 1.3E-13 4.4E-18 160.1 -2.1 84 1097-1181 214-313 (386)
110 3cvr_A Invasion plasmid antige 99.3 1.8E-11 6.1E-16 146.5 12.9 88 599-699 60-147 (571)
111 3cvr_A Invasion plasmid antige 99.2 3.6E-11 1.2E-15 143.9 15.3 117 1100-1231 121-244 (571)
112 1xeu_A Internalin C; cellular 99.2 2.2E-12 7.6E-17 140.0 4.5 82 599-685 20-101 (263)
113 3goz_A Leucine-rich repeat-con 99.2 3.5E-13 1.2E-17 154.7 -2.4 89 594-683 18-123 (362)
114 4ezg_A Putative uncharacterize 99.2 1.5E-11 5E-16 127.3 9.8 146 544-702 44-191 (197)
115 1h6t_A Internalin B; cell adhe 99.2 1.3E-11 4.6E-16 136.2 10.0 166 1038-1228 46-211 (291)
116 2o6s_A Variable lymphocyte rec 99.2 1.2E-10 4E-15 121.8 15.1 122 1096-1228 73-196 (208)
117 2v9t_B SLIT homolog 2 protein 99.2 8.9E-11 3.1E-15 123.5 13.3 94 601-697 14-109 (220)
118 1m9s_A Internalin B; cell inva 99.2 4E-11 1.4E-15 145.4 11.8 144 1073-1228 65-208 (605)
119 1dce_A Protein (RAB geranylger 99.2 8E-13 2.7E-17 159.4 -3.3 61 618-678 346-420 (567)
120 2ell_A Acidic leucine-rich nuc 99.2 2.3E-11 7.8E-16 122.3 6.9 129 568-703 23-158 (168)
121 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.5E-16 120.6 5.5 125 568-699 16-147 (149)
122 3e6j_A Variable lymphocyte rec 99.2 1.4E-10 4.6E-15 123.0 13.0 82 601-686 22-105 (229)
123 1a9n_A U2A', U2A'; complex (nu 99.1 1.9E-11 6.5E-16 123.8 5.4 130 564-703 14-151 (176)
124 3e6j_A Variable lymphocyte rec 99.1 2.5E-10 8.4E-15 121.0 13.9 137 1087-1228 30-170 (229)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 2E-10 7E-15 120.7 12.8 93 601-697 14-110 (220)
126 1njg_A DNA polymerase III subu 99.1 5.7E-10 2E-14 120.6 16.1 199 186-400 23-231 (250)
127 1xeu_A Internalin C; cellular 99.1 7E-11 2.4E-15 128.1 8.6 148 1073-1234 41-188 (263)
128 4b8c_D Glucose-repressible alc 99.1 4.8E-11 1.7E-15 148.8 7.3 107 594-702 220-326 (727)
129 3goz_A Leucine-rich repeat-con 99.1 3.8E-12 1.3E-16 146.0 -2.4 81 1100-1181 168-263 (362)
130 2v9t_B SLIT homolog 2 protein 99.1 4.9E-10 1.7E-14 117.8 13.8 136 1088-1228 23-163 (220)
131 2ell_A Acidic leucine-rich nuc 99.1 9.3E-11 3.2E-15 117.8 7.6 138 541-687 21-165 (168)
132 2o6s_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 116.7 13.7 127 1099-1228 28-159 (208)
133 2v70_A SLIT-2, SLIT homolog 2 99.1 7.3E-10 2.5E-14 116.5 14.0 138 1087-1228 22-164 (220)
134 2xot_A Amphoterin-induced prot 99.1 2E-10 6.7E-15 131.5 10.4 161 1087-1253 29-202 (361)
135 2xot_A Amphoterin-induced prot 99.1 1E-10 3.5E-15 133.8 7.6 94 601-698 21-118 (361)
136 2chg_A Replication factor C sm 99.0 1.4E-09 4.6E-14 115.6 14.4 185 186-398 17-205 (226)
137 2je0_A Acidic leucine-rich nuc 99.0 1E-10 3.6E-15 114.7 3.5 106 595-702 14-123 (149)
138 2wfh_A SLIT homolog 2 protein 99.0 4.6E-10 1.6E-14 115.0 7.8 104 598-703 31-137 (193)
139 1dce_A Protein (RAB geranylger 99.0 2.5E-10 8.6E-15 137.6 6.5 92 594-688 459-552 (567)
140 3sb4_A Hypothetical leucine ri 99.0 2.1E-09 7.1E-14 121.3 11.9 119 568-697 24-153 (329)
141 1a9n_A U2A', U2A'; complex (nu 98.9 3.9E-10 1.3E-14 114.1 5.1 105 594-702 15-123 (176)
142 2wfh_A SLIT homolog 2 protein 98.9 3.4E-09 1.2E-13 108.5 11.3 93 601-697 13-107 (193)
143 1w8a_A SLIT protein; signaling 98.9 1.2E-09 4.3E-14 111.9 7.6 103 599-703 30-137 (192)
144 4b8c_D Glucose-repressible alc 98.9 6.5E-10 2.2E-14 138.7 5.0 120 563-690 218-338 (727)
145 1sxj_B Activator 1 37 kDa subu 98.9 7.3E-09 2.5E-13 116.8 13.2 187 186-399 21-212 (323)
146 1ds9_A Outer arm dynein; leuci 98.9 3.2E-11 1.1E-15 124.8 -5.9 104 593-700 43-148 (198)
147 2r9u_A Variable lymphocyte rec 98.9 2.3E-09 7.9E-14 107.6 7.5 86 598-685 33-121 (174)
148 1hqc_A RUVB; extended AAA-ATPa 98.9 5.7E-09 2E-13 117.6 11.0 268 186-501 12-324 (324)
149 1w8a_A SLIT protein; signaling 98.9 7.3E-09 2.5E-13 106.2 10.8 91 1087-1181 19-112 (192)
150 3sb4_A Hypothetical leucine ri 98.8 2.7E-09 9.4E-14 120.3 7.2 100 909-1017 23-134 (329)
151 1ds9_A Outer arm dynein; leuci 98.8 6.7E-11 2.3E-15 122.4 -6.2 125 564-698 43-180 (198)
152 2r9u_A Variable lymphocyte rec 98.8 3.1E-09 1.1E-13 106.6 6.0 101 601-705 15-118 (174)
153 3g39_A Variable lymphocyte rec 98.8 4.2E-09 1.4E-13 105.4 6.8 98 601-702 12-112 (170)
154 2o6r_A Variable lymphocyte rec 98.7 1.1E-08 3.6E-13 103.6 7.6 103 598-702 28-134 (177)
155 2o6r_A Variable lymphocyte rec 98.7 5.9E-08 2E-12 98.1 12.2 115 1087-1228 18-135 (177)
156 3g39_A Variable lymphocyte rec 98.7 1.4E-08 4.6E-13 101.7 6.1 87 598-686 30-119 (170)
157 1iqp_A RFCS; clamp loader, ext 98.6 8.5E-08 2.9E-12 108.2 11.8 186 186-399 25-214 (327)
158 3te6_A Regulatory protein SIR3 98.6 3.1E-07 1.1E-11 99.8 13.1 174 187-364 21-212 (318)
159 4fdw_A Leucine rich hypothetic 98.5 3.7E-06 1.3E-10 96.5 21.5 145 1097-1250 224-380 (401)
160 2ifg_A High affinity nerve gro 98.5 1.2E-07 4.1E-12 107.9 7.3 95 603-700 13-111 (347)
161 2chq_A Replication factor C sm 98.5 6.3E-07 2.2E-11 100.6 12.9 182 186-397 17-204 (319)
162 1jr3_A DNA polymerase III subu 98.4 8.2E-07 2.8E-11 102.2 13.3 196 186-397 16-221 (373)
163 4fs7_A Uncharacterized protein 98.4 4.5E-06 1.6E-10 96.4 19.1 38 927-964 157-195 (394)
164 4fs7_A Uncharacterized protein 98.3 2.4E-05 8.1E-10 90.3 21.0 140 1097-1248 228-374 (394)
165 4fdw_A Leucine rich hypothetic 98.3 2.5E-05 8.5E-10 89.6 20.8 32 933-964 158-190 (401)
166 2ifg_A High affinity nerve gro 98.2 9E-07 3.1E-11 100.6 7.2 91 590-683 24-117 (347)
167 3bos_A Putative DNA replicatio 98.2 1.2E-06 4.2E-11 93.7 7.5 173 187-397 29-217 (242)
168 1jbk_A CLPB protein; beta barr 98.2 1.6E-06 5.3E-11 89.1 7.8 45 186-236 22-66 (195)
169 1sxj_D Activator 1 41 kDa subu 98.2 7.3E-06 2.5E-10 93.3 14.1 195 186-396 37-234 (353)
170 3pfi_A Holliday junction ATP-d 98.2 1.5E-05 5.1E-10 89.9 16.2 177 186-396 29-226 (338)
171 2z4s_A Chromosomal replication 98.1 1.1E-05 3.7E-10 93.7 12.6 160 213-394 130-303 (440)
172 3pvs_A Replication-associated 98.1 1.2E-05 4E-10 93.1 12.3 179 186-396 26-214 (447)
173 3h4m_A Proteasome-activating n 98.0 1.6E-05 5.5E-10 87.1 11.5 184 185-394 16-228 (285)
174 1a5t_A Delta prime, HOLB; zinc 98.0 7.4E-05 2.5E-09 83.5 16.7 171 192-396 8-204 (334)
175 1d2n_A N-ethylmaleimide-sensit 98.0 6.9E-05 2.3E-09 81.3 15.1 195 187-414 34-259 (272)
176 1sxj_E Activator 1 40 kDa subu 98.0 2.6E-05 9E-10 88.6 12.3 196 186-397 14-237 (354)
177 1sxj_A Activator 1 95 kDa subu 98.0 1.8E-05 6.1E-10 94.3 10.9 198 186-398 39-254 (516)
178 3uk6_A RUVB-like 2; hexameric 98.0 7.9E-05 2.7E-09 85.1 15.9 194 186-394 44-300 (368)
179 2qz4_A Paraplegin; AAA+, SPG7, 97.9 4.4E-05 1.5E-09 82.5 12.0 187 186-396 6-221 (262)
180 3syl_A Protein CBBX; photosynt 97.9 3.6E-05 1.2E-09 85.5 11.1 159 187-364 32-218 (309)
181 3u61_B DNA polymerase accessor 97.9 3.8E-05 1.3E-09 85.9 11.3 174 186-393 26-212 (324)
182 2ra8_A Uncharacterized protein 97.9 5.8E-06 2E-10 92.9 3.9 125 1098-1227 171-317 (362)
183 2p65_A Hypothetical protein PF 97.8 1.8E-05 6.1E-10 80.5 6.9 45 186-236 22-66 (187)
184 3eie_A Vacuolar protein sortin 97.8 0.00015 5E-09 80.7 13.6 186 186-397 18-228 (322)
185 1sxj_C Activator 1 40 kDa subu 97.8 0.00016 5.5E-09 81.2 13.7 175 186-393 25-208 (340)
186 3n70_A Transport activator; si 97.8 2.4E-05 8.2E-10 75.3 5.9 114 187-332 2-115 (145)
187 4gt6_A Cell surface protein; l 97.8 0.0021 7E-08 73.9 23.1 23 826-848 83-107 (394)
188 2qp9_X Vacuolar protein sortin 97.7 0.00022 7.4E-09 80.3 14.4 185 186-397 51-261 (355)
189 3d8b_A Fidgetin-like protein 1 97.7 0.00038 1.3E-08 78.4 16.1 188 186-398 84-296 (357)
190 1l8q_A Chromosomal replication 97.7 0.00026 8.7E-09 79.0 14.5 155 212-391 36-202 (324)
191 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00051 1.8E-08 76.0 16.7 187 186-397 12-223 (322)
192 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.6E-10 76.6 4.2 81 1099-1180 61-148 (176)
193 3ec2_A DNA replication protein 97.7 5.6E-05 1.9E-09 76.1 7.3 121 191-332 19-142 (180)
194 3un9_A NLR family member X1; l 97.7 1E-05 3.5E-10 91.8 2.0 84 596-679 153-250 (372)
195 3un9_A NLR family member X1; l 97.7 9E-06 3.1E-10 92.3 1.3 128 569-702 101-249 (372)
196 2gno_A DNA polymerase III, gam 97.6 0.00022 7.6E-09 77.7 11.1 149 190-363 1-152 (305)
197 3pxg_A Negative regulator of g 97.6 0.00026 8.9E-09 82.9 11.9 145 186-363 180-338 (468)
198 2w58_A DNAI, primosome compone 97.5 7.8E-05 2.7E-09 76.7 6.4 119 193-332 36-158 (202)
199 2zan_A Vacuolar protein sortin 97.5 0.0013 4.5E-08 76.3 17.4 187 186-396 134-344 (444)
200 3rw6_A Nuclear RNA export fact 97.5 4.7E-05 1.6E-09 80.6 4.6 79 595-674 167-257 (267)
201 3b9p_A CG5977-PA, isoform A; A 97.5 0.00097 3.3E-08 73.3 15.1 184 186-396 21-232 (297)
202 1io0_A Tropomodulin; LRR prote 97.5 5.9E-05 2E-09 76.1 4.6 114 565-679 32-162 (185)
203 2ra8_A Uncharacterized protein 97.5 9.4E-05 3.2E-09 83.0 6.6 54 886-940 169-227 (362)
204 3vfd_A Spastin; ATPase, microt 97.5 0.00065 2.2E-08 77.8 13.6 187 186-397 115-326 (389)
205 3cf0_A Transitional endoplasmi 97.5 0.0014 4.7E-08 71.9 15.5 180 186-391 15-222 (301)
206 1qvr_A CLPB protein; coiled co 97.4 0.00014 4.6E-09 92.5 7.8 45 186-236 170-214 (854)
207 4h09_A Hypothetical leucine ri 97.4 0.023 7.7E-07 64.8 25.8 78 1098-1180 239-319 (379)
208 3e4g_A ATP synthase subunit S, 97.4 0.00015 5.1E-09 70.7 6.2 88 933-1023 62-155 (176)
209 1io0_A Tropomodulin; LRR prote 97.4 4.4E-05 1.5E-09 77.0 2.6 107 592-699 30-158 (185)
210 4gt6_A Cell surface protein; l 97.4 0.0034 1.2E-07 72.1 18.4 105 1117-1227 259-367 (394)
211 3co5_A Putative two-component 97.3 9.5E-05 3.3E-09 70.9 3.6 47 186-236 4-50 (143)
212 3rw6_A Nuclear RNA export fact 97.3 2.4E-05 8.2E-10 82.9 -1.1 98 603-702 148-261 (267)
213 4b4t_J 26S protease regulatory 97.3 0.0012 4E-08 73.6 12.3 179 186-390 148-354 (405)
214 1in4_A RUVB, holliday junction 97.3 0.002 6.7E-08 71.9 14.3 175 186-394 25-220 (334)
215 4fcw_A Chaperone protein CLPB; 97.2 0.00093 3.2E-08 74.1 10.7 122 187-317 18-143 (311)
216 3hu3_A Transitional endoplasmi 97.2 0.00059 2E-08 79.6 9.1 185 186-396 204-414 (489)
217 4b4t_K 26S protease regulatory 97.2 0.0014 4.7E-08 74.3 11.5 179 185-389 171-378 (428)
218 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0025 8.5E-08 80.2 14.9 152 186-362 186-361 (758)
219 2bjv_A PSP operon transcriptio 97.1 0.00082 2.8E-08 72.4 8.6 47 186-236 6-52 (265)
220 4b4t_L 26S protease subunit RP 97.1 0.0025 8.4E-08 72.3 12.5 180 185-390 180-387 (437)
221 3pxi_A Negative regulator of g 97.1 0.0015 5.2E-08 81.9 11.9 147 186-363 180-338 (758)
222 2kjq_A DNAA-related protein; s 97.1 0.0002 7E-09 68.8 2.9 24 213-236 36-59 (149)
223 2r62_A Cell division protease 97.0 0.00041 1.4E-08 75.0 5.1 50 186-235 11-66 (268)
224 2ce7_A Cell division protein F 97.0 0.0031 1.1E-07 72.8 12.5 179 186-390 16-221 (476)
225 1ojl_A Transcriptional regulat 97.0 0.00081 2.8E-08 73.7 7.2 46 186-235 2-47 (304)
226 1lv7_A FTSH; alpha/beta domain 97.0 0.0063 2.2E-07 65.0 14.1 183 186-394 12-222 (257)
227 2c9o_A RUVB-like 1; hexameric 97.0 0.0029 9.9E-08 73.9 11.8 93 295-395 297-408 (456)
228 1ofh_A ATP-dependent HSL prote 97.0 0.0026 8.9E-08 70.4 11.0 50 186-235 15-72 (310)
229 4b4t_H 26S protease regulatory 96.9 0.002 6.8E-08 72.7 9.4 178 186-389 209-414 (467)
230 4b4t_I 26S protease regulatory 96.9 0.0019 6.6E-08 72.0 8.9 178 186-389 182-387 (437)
231 4b4t_M 26S protease regulatory 96.9 0.0016 5.4E-08 73.8 8.2 179 185-389 180-386 (434)
232 3m6a_A ATP-dependent protease 96.8 0.0029 9.9E-08 75.3 9.7 51 185-235 80-130 (543)
233 4h09_A Hypothetical leucine ri 96.7 0.048 1.6E-06 62.1 19.4 132 1095-1236 213-350 (379)
234 3pxi_A Negative regulator of g 96.7 0.0025 8.4E-08 80.0 9.1 124 186-331 491-628 (758)
235 2cvh_A DNA repair and recombin 96.5 0.0071 2.4E-07 62.8 9.7 86 212-303 19-115 (220)
236 3t15_A Ribulose bisphosphate c 96.5 0.0061 2.1E-07 66.3 9.4 25 211-235 34-58 (293)
237 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.002 6.7E-08 69.1 4.3 68 213-303 123-192 (331)
238 2r44_A Uncharacterized protein 96.4 0.007 2.4E-07 67.5 9.1 41 187-235 28-68 (331)
239 2qgz_A Helicase loader, putati 96.3 0.0024 8E-08 70.0 4.8 56 191-251 133-189 (308)
240 3cf2_A TER ATPase, transitiona 96.3 0.013 4.6E-07 71.6 11.8 179 186-390 204-407 (806)
241 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.018 6E-07 67.1 10.8 42 187-236 23-64 (500)
242 2dhr_A FTSH; AAA+ protein, hex 96.0 0.034 1.2E-06 64.6 12.4 154 185-363 30-214 (499)
243 1qvr_A CLPB protein; coiled co 96.0 0.012 4E-07 74.7 9.3 50 186-235 558-610 (854)
244 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0083 2.8E-07 75.4 7.3 50 186-235 458-510 (758)
245 3hr8_A Protein RECA; alpha and 95.8 0.023 7.8E-07 62.8 9.5 85 212-303 60-149 (356)
246 1um8_A ATP-dependent CLP prote 95.8 0.018 6.3E-07 65.3 9.0 50 186-235 21-94 (376)
247 2x8a_A Nuclear valosin-contain 95.8 0.04 1.4E-06 59.0 11.0 157 186-363 10-191 (274)
248 1ixz_A ATP-dependent metallopr 95.7 0.026 9.1E-07 59.9 9.2 50 186-235 16-71 (254)
249 1ypw_A Transitional endoplasmi 95.7 0.025 8.6E-07 70.7 10.1 158 185-363 203-385 (806)
250 1iy2_A ATP-dependent metallopr 95.6 0.028 9.5E-07 60.7 9.2 51 185-235 39-95 (278)
251 1g5t_A COB(I)alamin adenosyltr 95.6 0.0072 2.5E-07 59.7 4.0 114 214-333 29-163 (196)
252 2zr9_A Protein RECA, recombina 95.6 0.035 1.2E-06 61.6 9.8 85 212-303 60-149 (349)
253 1xp8_A RECA protein, recombina 95.6 0.036 1.2E-06 61.7 9.9 84 212-302 73-161 (366)
254 2b8t_A Thymidine kinase; deoxy 95.5 0.0071 2.4E-07 61.9 3.5 114 212-333 11-126 (223)
255 3io5_A Recombination and repai 95.4 0.036 1.2E-06 59.0 8.7 82 215-303 30-121 (333)
256 1v5w_A DMC1, meiotic recombina 95.3 0.044 1.5E-06 60.9 9.4 57 211-268 120-180 (343)
257 1rz3_A Hypothetical protein rb 95.1 0.021 7.1E-07 58.1 5.5 43 190-235 2-44 (201)
258 1u94_A RECA protein, recombina 95.1 0.057 1.9E-06 59.9 9.4 84 212-302 62-150 (356)
259 3rfe_A Platelet glycoprotein I 95.0 0.025 8.6E-07 52.5 5.5 52 602-655 12-66 (130)
260 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.049 1.7E-06 57.0 8.5 116 213-333 23-168 (235)
261 2cbz_A Multidrug resistance-as 94.9 0.17 5.7E-06 52.7 11.9 25 212-236 30-54 (237)
262 1n0w_A DNA repair protein RAD5 94.9 0.039 1.4E-06 58.1 7.3 56 212-268 23-82 (243)
263 1jr3_D DNA polymerase III, del 94.8 0.24 8.2E-06 55.2 13.9 158 212-396 17-184 (343)
264 2z43_A DNA repair and recombin 94.8 0.06 2.1E-06 59.4 8.6 90 212-302 106-212 (324)
265 1odf_A YGR205W, hypothetical 3 94.8 0.12 4E-06 55.6 10.6 82 211-292 29-117 (290)
266 2pze_A Cystic fibrosis transme 94.1 0.37 1.3E-05 49.8 12.3 23 213-235 34-56 (229)
267 2px0_A Flagellar biosynthesis 94.1 0.11 3.6E-06 56.2 8.5 24 212-235 104-127 (296)
268 2i1q_A DNA repair and recombin 94.0 0.076 2.6E-06 58.6 7.4 57 212-269 97-167 (322)
269 3bh0_A DNAB-like replicative h 93.9 0.21 7.2E-06 54.6 10.5 53 212-268 67-119 (315)
270 3ice_A Transcription terminati 93.6 0.094 3.2E-06 57.4 6.8 34 197-235 163-196 (422)
271 1vma_A Cell division protein F 93.5 0.16 5.4E-06 55.0 8.4 89 212-303 103-196 (306)
272 1qhx_A CPT, protein (chloramph 93.4 0.038 1.3E-06 54.9 3.3 22 214-235 4-25 (178)
273 3c8u_A Fructokinase; YP_612366 93.4 0.05 1.7E-06 55.6 4.2 38 194-235 7-44 (208)
274 1zp6_A Hypothetical protein AT 93.4 0.044 1.5E-06 55.1 3.7 24 212-235 8-31 (191)
275 4a74_A DNA repair and recombin 93.3 0.18 6.1E-06 52.4 8.4 46 212-257 24-73 (231)
276 1gvn_B Zeta; postsegregational 93.3 0.066 2.3E-06 57.7 5.0 40 195-235 16-55 (287)
277 3vaa_A Shikimate kinase, SK; s 93.2 0.043 1.5E-06 55.7 3.2 23 213-235 25-47 (199)
278 3lw7_A Adenylate kinase relate 93.2 0.041 1.4E-06 54.5 3.1 20 214-233 2-21 (179)
279 3kb2_A SPBC2 prophage-derived 93.2 0.041 1.4E-06 54.3 3.0 22 214-235 2-23 (173)
280 1pzn_A RAD51, DNA repair and r 93.2 0.13 4.6E-06 57.0 7.5 48 211-258 129-180 (349)
281 2ga8_A Hypothetical 39.9 kDa p 93.0 0.08 2.7E-06 57.7 5.1 45 189-235 2-46 (359)
282 3dm5_A SRP54, signal recogniti 92.9 0.68 2.3E-05 52.4 12.8 24 212-235 99-122 (443)
283 1kgd_A CASK, peripheral plasma 92.9 0.057 1.9E-06 53.7 3.6 23 213-235 5-27 (180)
284 3tqc_A Pantothenate kinase; bi 92.9 0.082 2.8E-06 57.4 5.0 45 189-235 70-114 (321)
285 1ly1_A Polynucleotide kinase; 92.8 0.05 1.7E-06 54.1 3.1 22 214-235 3-24 (181)
286 3uie_A Adenylyl-sulfate kinase 92.7 0.062 2.1E-06 54.5 3.6 24 212-235 24-47 (200)
287 1ypw_A Transitional endoplasmi 92.7 0.047 1.6E-06 68.2 3.2 51 185-235 476-533 (806)
288 3fwy_A Light-independent proto 92.7 0.057 1.9E-06 58.8 3.4 41 211-253 46-86 (314)
289 3trf_A Shikimate kinase, SK; a 92.6 0.055 1.9E-06 54.1 3.0 23 213-235 5-27 (185)
290 3lda_A DNA repair protein RAD5 92.6 0.21 7.1E-06 56.3 7.9 57 212-269 177-237 (400)
291 3cf2_A TER ATPase, transitiona 92.5 0.45 1.5E-05 58.4 11.3 158 185-363 476-661 (806)
292 1kag_A SKI, shikimate kinase I 92.5 0.051 1.8E-06 53.6 2.6 22 214-235 5-26 (173)
293 3tau_A Guanylate kinase, GMP k 92.5 0.068 2.3E-06 54.6 3.6 25 212-236 7-31 (208)
294 4eun_A Thermoresistant glucoki 92.4 0.066 2.3E-06 54.3 3.4 24 212-235 28-51 (200)
295 2p5t_B PEZT; postsegregational 92.4 0.087 3E-06 55.7 4.5 41 194-235 14-54 (253)
296 1knq_A Gluconate kinase; ALFA/ 92.4 0.081 2.8E-06 52.2 3.9 24 212-235 7-30 (175)
297 1sky_E F1-ATPase, F1-ATP synth 92.4 0.42 1.4E-05 54.3 10.0 51 214-265 152-203 (473)
298 2rhm_A Putative kinase; P-loop 92.3 0.07 2.4E-06 53.7 3.4 23 213-235 5-27 (193)
299 3tr0_A Guanylate kinase, GMP k 92.2 0.076 2.6E-06 54.1 3.6 23 213-235 7-29 (205)
300 3t61_A Gluconokinase; PSI-biol 92.2 0.064 2.2E-06 54.6 3.0 23 213-235 18-40 (202)
301 3jvv_A Twitching mobility prot 92.1 0.11 3.9E-06 57.5 5.0 111 214-336 124-234 (356)
302 3e70_C DPA, signal recognition 92.1 0.55 1.9E-05 51.3 10.4 25 211-235 127-151 (328)
303 3hws_A ATP-dependent CLP prote 92.1 0.1 3.5E-06 58.7 4.8 49 187-235 16-73 (363)
304 4gp7_A Metallophosphoesterase; 92.1 0.074 2.5E-06 52.3 3.1 23 213-235 9-31 (171)
305 1y63_A LMAJ004144AAA protein; 92.0 0.081 2.8E-06 52.8 3.4 24 212-235 9-32 (184)
306 1pgv_A TMD-1, tropomodulin TMD 92.0 0.17 5.8E-06 50.2 5.6 83 595-677 38-135 (197)
307 2qor_A Guanylate kinase; phosp 92.0 0.067 2.3E-06 54.4 2.8 24 212-235 11-34 (204)
308 1ex7_A Guanylate kinase; subst 92.0 0.064 2.2E-06 53.1 2.5 22 214-235 2-23 (186)
309 3iij_A Coilin-interacting nucl 92.0 0.067 2.3E-06 53.2 2.7 23 213-235 11-33 (180)
310 1nks_A Adenylate kinase; therm 91.9 0.074 2.5E-06 53.6 3.0 22 214-235 2-23 (194)
311 2xxa_A Signal recognition part 91.9 0.79 2.7E-05 52.2 11.8 42 194-235 78-122 (433)
312 3a00_A Guanylate kinase, GMP k 91.9 0.069 2.4E-06 53.4 2.7 22 214-235 2-23 (186)
313 2qt1_A Nicotinamide riboside k 91.8 0.11 3.7E-06 53.1 4.1 24 212-235 20-43 (207)
314 2c95_A Adenylate kinase 1; tra 91.8 0.09 3.1E-06 53.1 3.5 23 213-235 9-31 (196)
315 3asz_A Uridine kinase; cytidin 91.7 0.091 3.1E-06 53.8 3.5 24 212-235 5-28 (211)
316 1xjc_A MOBB protein homolog; s 91.7 0.14 4.9E-06 49.5 4.6 24 212-235 3-26 (169)
317 4a1f_A DNAB helicase, replicat 91.7 0.53 1.8E-05 51.4 9.7 53 212-268 45-97 (338)
318 1kht_A Adenylate kinase; phosp 91.7 0.08 2.7E-06 53.2 3.0 22 214-235 4-25 (192)
319 2j41_A Guanylate kinase; GMP, 91.7 0.095 3.3E-06 53.4 3.6 23 213-235 6-28 (207)
320 1uf9_A TT1252 protein; P-loop, 91.6 0.094 3.2E-06 53.3 3.4 25 211-235 6-30 (203)
321 1zu4_A FTSY; GTPase, signal re 91.6 0.98 3.4E-05 49.1 11.7 25 211-235 103-127 (320)
322 2bdt_A BH3686; alpha-beta prot 91.6 0.089 3.1E-06 52.7 3.2 22 214-235 3-24 (189)
323 2yvu_A Probable adenylyl-sulfa 91.6 0.16 5.5E-06 50.7 5.1 24 212-235 12-35 (186)
324 1ukz_A Uridylate kinase; trans 91.5 0.1 3.4E-06 53.1 3.6 24 212-235 14-37 (203)
325 1via_A Shikimate kinase; struc 91.5 0.073 2.5E-06 52.6 2.4 22 214-235 5-26 (175)
326 3ney_A 55 kDa erythrocyte memb 91.5 0.1 3.5E-06 52.0 3.4 24 212-235 18-41 (197)
327 2ze6_A Isopentenyl transferase 91.5 0.083 2.8E-06 55.8 3.0 22 214-235 2-23 (253)
328 1zuh_A Shikimate kinase; alpha 91.5 0.088 3E-06 51.6 3.0 24 212-235 6-29 (168)
329 1ye8_A Protein THEP1, hypothet 91.5 0.098 3.3E-06 51.6 3.2 22 215-236 2-23 (178)
330 1lvg_A Guanylate kinase, GMP k 91.4 0.082 2.8E-06 53.4 2.6 23 213-235 4-26 (198)
331 3cmu_A Protein RECA, recombina 91.3 0.39 1.3E-05 64.4 9.6 86 211-303 1425-1515(2050)
332 2if2_A Dephospho-COA kinase; a 91.3 0.095 3.2E-06 53.3 3.1 22 214-235 2-23 (204)
333 1tev_A UMP-CMP kinase; ploop, 91.3 0.095 3.3E-06 52.9 3.1 23 213-235 3-25 (196)
334 3rfe_A Platelet glycoprotein I 91.3 0.23 7.8E-06 45.9 5.4 52 1127-1181 12-65 (130)
335 2ffh_A Protein (FFH); SRP54, s 91.3 0.48 1.6E-05 53.6 9.0 23 213-235 98-120 (425)
336 2iyv_A Shikimate kinase, SK; t 91.2 0.076 2.6E-06 53.0 2.2 22 214-235 3-24 (184)
337 2yhs_A FTSY, cell division pro 91.2 0.86 2.9E-05 52.1 11.0 42 212-256 292-333 (503)
338 2cdn_A Adenylate kinase; phosp 91.2 0.12 4E-06 52.5 3.6 24 212-235 19-42 (201)
339 3a4m_A L-seryl-tRNA(SEC) kinas 91.2 0.1 3.4E-06 55.5 3.2 23 213-235 4-26 (260)
340 1nn5_A Similar to deoxythymidy 91.1 0.17 5.7E-06 52.0 4.8 23 213-235 9-31 (215)
341 1ls1_A Signal recognition part 91.1 0.47 1.6E-05 51.1 8.5 23 213-235 98-120 (295)
342 2bwj_A Adenylate kinase 5; pho 91.1 0.11 3.6E-06 52.7 3.2 23 213-235 12-34 (199)
343 2jaq_A Deoxyguanosine kinase; 91.1 0.098 3.3E-06 53.2 2.9 21 215-235 2-22 (205)
344 3kl4_A SRP54, signal recogniti 91.0 0.55 1.9E-05 53.1 9.2 24 212-235 96-119 (433)
345 1jjv_A Dephospho-COA kinase; P 91.0 0.11 3.8E-06 52.9 3.2 22 214-235 3-24 (206)
346 1znw_A Guanylate kinase, GMP k 91.0 0.12 4.1E-06 52.7 3.5 24 212-235 19-42 (207)
347 1qf9_A UMP/CMP kinase, protein 91.0 0.13 4.5E-06 51.7 3.7 23 213-235 6-28 (194)
348 1pgv_A TMD-1, tropomodulin TMD 90.9 0.23 7.8E-06 49.3 5.3 113 566-679 38-168 (197)
349 1rj9_A FTSY, signal recognitio 90.9 0.14 4.6E-06 55.5 4.0 24 212-235 101-124 (304)
350 1htw_A HI0065; nucleotide-bind 90.9 0.13 4.6E-06 49.4 3.5 24 212-235 32-55 (158)
351 1tue_A Replication protein E1; 90.9 0.17 5.9E-06 50.1 4.2 36 195-235 45-80 (212)
352 1e6c_A Shikimate kinase; phosp 90.9 0.091 3.1E-06 51.8 2.4 22 214-235 3-24 (173)
353 2bbw_A Adenylate kinase 4, AK4 90.9 0.12 4.1E-06 54.4 3.5 23 213-235 27-49 (246)
354 3cm0_A Adenylate kinase; ATP-b 90.8 0.11 3.8E-06 51.9 3.0 23 213-235 4-26 (186)
355 2z0h_A DTMP kinase, thymidylat 90.8 0.25 8.7E-06 49.7 5.8 21 215-235 2-22 (197)
356 3umf_A Adenylate kinase; rossm 90.8 0.12 4.2E-06 52.5 3.2 25 211-235 27-51 (217)
357 2plr_A DTMP kinase, probable t 90.8 0.12 4E-06 53.0 3.2 22 214-235 5-26 (213)
358 1cke_A CK, MSSA, protein (cyti 90.7 0.12 4.2E-06 53.6 3.3 22 214-235 6-27 (227)
359 2hf9_A Probable hydrogenase ni 90.7 0.14 4.9E-06 53.0 3.8 39 192-236 23-61 (226)
360 3aez_A Pantothenate kinase; tr 90.7 0.13 4.4E-06 56.0 3.5 25 211-235 88-112 (312)
361 2ck3_D ATP synthase subunit be 90.7 0.91 3.1E-05 51.4 10.4 65 197-267 142-207 (482)
362 1z6g_A Guanylate kinase; struc 90.7 0.11 3.8E-06 53.3 2.9 23 213-235 23-45 (218)
363 2vli_A Antibiotic resistance p 90.7 0.086 2.9E-06 52.5 2.0 23 213-235 5-27 (183)
364 1s96_A Guanylate kinase, GMP k 90.6 0.14 4.6E-06 52.5 3.4 24 212-235 15-38 (219)
365 2r6a_A DNAB helicase, replicat 90.6 0.65 2.2E-05 53.8 9.6 52 212-266 202-253 (454)
366 2pez_A Bifunctional 3'-phospho 90.6 0.13 4.4E-06 51.0 3.2 24 212-235 4-27 (179)
367 2grj_A Dephospho-COA kinase; T 90.6 0.12 4.2E-06 51.6 3.0 24 212-235 11-34 (192)
368 1uj2_A Uridine-cytidine kinase 90.5 0.13 4.3E-06 54.4 3.2 25 211-235 20-44 (252)
369 3l0o_A Transcription terminati 90.5 0.75 2.5E-05 50.3 9.1 36 196-236 163-198 (427)
370 2jeo_A Uridine-cytidine kinase 90.5 0.14 4.8E-06 53.8 3.6 24 212-235 24-47 (245)
371 2wwf_A Thymidilate kinase, put 90.5 0.14 4.7E-06 52.5 3.4 24 212-235 9-32 (212)
372 1q57_A DNA primase/helicase; d 90.5 0.78 2.7E-05 54.0 10.4 54 212-268 241-294 (503)
373 4e22_A Cytidylate kinase; P-lo 90.5 0.14 4.9E-06 53.9 3.6 23 213-235 27-49 (252)
374 1aky_A Adenylate kinase; ATP:A 90.4 0.13 4.6E-06 52.9 3.3 23 213-235 4-26 (220)
375 2q6t_A DNAB replication FORK h 90.3 0.79 2.7E-05 52.9 10.0 54 212-268 199-252 (444)
376 2pt5_A Shikimate kinase, SK; a 90.3 0.13 4.4E-06 50.3 2.9 21 215-235 2-22 (168)
377 3tlx_A Adenylate kinase 2; str 90.2 0.2 6.9E-06 52.4 4.4 24 212-235 28-51 (243)
378 1zd8_A GTP:AMP phosphotransfer 90.1 0.14 4.9E-06 53.0 3.2 23 213-235 7-29 (227)
379 3upu_A ATP-dependent DNA helic 90.1 0.31 1.1E-05 56.6 6.4 23 214-236 46-68 (459)
380 2f6r_A COA synthase, bifunctio 90.0 0.17 5.8E-06 54.3 3.7 23 212-234 74-96 (281)
381 2pbr_A DTMP kinase, thymidylat 90.0 0.14 4.9E-06 51.5 2.9 21 215-235 2-22 (195)
382 1g8p_A Magnesium-chelatase 38 89.9 0.13 4.3E-06 57.7 2.8 44 186-235 24-67 (350)
383 1g41_A Heat shock protein HSLU 89.9 0.25 8.5E-06 56.1 5.0 50 186-235 15-72 (444)
384 2v54_A DTMP kinase, thymidylat 89.9 0.16 5.5E-06 51.6 3.3 23 213-235 4-26 (204)
385 1sq5_A Pantothenate kinase; P- 89.8 0.32 1.1E-05 53.0 5.7 25 211-235 78-102 (308)
386 3e1s_A Exodeoxyribonuclease V, 89.8 0.8 2.7E-05 54.5 9.6 104 214-331 205-314 (574)
387 1zak_A Adenylate kinase; ATP:A 89.8 0.15 5.1E-06 52.7 3.0 23 213-235 5-27 (222)
388 2f1r_A Molybdopterin-guanine d 89.6 0.14 4.8E-06 50.0 2.4 23 214-236 3-25 (171)
389 2wsm_A Hydrogenase expression/ 89.5 0.15 5.1E-06 52.6 2.8 41 190-236 13-53 (221)
390 1j8m_F SRP54, signal recogniti 89.5 0.76 2.6E-05 49.4 8.4 38 213-252 98-135 (297)
391 1m7g_A Adenylylsulfate kinase; 89.5 0.18 6.1E-06 51.6 3.3 24 212-235 24-47 (211)
392 1gtv_A TMK, thymidylate kinase 89.5 0.11 3.7E-06 53.4 1.6 22 214-235 1-22 (214)
393 3hjn_A DTMP kinase, thymidylat 89.5 0.45 1.5E-05 47.7 6.2 33 215-249 2-34 (197)
394 2j37_W Signal recognition part 89.4 2.4 8.1E-05 49.1 12.9 41 195-235 80-123 (504)
395 3nwj_A ATSK2; P loop, shikimat 89.3 0.15 5.3E-06 53.2 2.6 22 214-235 49-70 (250)
396 3llm_A ATP-dependent RNA helic 89.2 0.68 2.3E-05 48.1 7.5 90 214-304 77-187 (235)
397 3tif_A Uncharacterized ABC tra 89.1 0.21 7.3E-06 51.8 3.5 24 212-235 30-53 (235)
398 3be4_A Adenylate kinase; malar 89.1 0.17 5.9E-06 52.0 2.8 22 214-235 6-27 (217)
399 1cr0_A DNA primase/helicase; R 89.1 0.57 1.9E-05 50.8 7.1 51 212-266 34-85 (296)
400 3cmu_A Protein RECA, recombina 89.1 0.8 2.7E-05 61.6 9.6 85 212-303 382-471 (2050)
401 3lnc_A Guanylate kinase, GMP k 89.0 0.15 5.1E-06 53.0 2.3 23 213-235 27-50 (231)
402 3fb4_A Adenylate kinase; psych 89.0 0.19 6.3E-06 51.7 3.0 21 215-235 2-22 (216)
403 2i3b_A HCR-ntpase, human cance 89.0 0.17 5.9E-06 50.3 2.6 23 214-236 2-24 (189)
404 1vht_A Dephospho-COA kinase; s 89.0 0.21 7.1E-06 51.4 3.3 23 213-235 4-26 (218)
405 2onk_A Molybdate/tungstate ABC 88.9 0.22 7.5E-06 51.8 3.5 22 214-235 25-46 (240)
406 3cmw_A Protein RECA, recombina 88.9 0.74 2.5E-05 61.0 9.1 86 212-304 382-472 (1706)
407 3b9q_A Chloroplast SRP recepto 88.8 0.22 7.5E-06 53.9 3.4 24 212-235 99-122 (302)
408 3dl0_A Adenylate kinase; phosp 88.7 0.2 6.8E-06 51.5 3.0 21 215-235 2-22 (216)
409 3a8t_A Adenylate isopentenyltr 88.7 0.24 8.2E-06 53.7 3.6 24 212-235 39-62 (339)
410 2pcj_A ABC transporter, lipopr 88.7 0.23 7.8E-06 51.1 3.4 23 213-235 30-52 (224)
411 2ged_A SR-beta, signal recogni 88.7 0.33 1.1E-05 48.6 4.6 26 211-236 46-71 (193)
412 2o8b_B DNA mismatch repair pro 88.7 0.51 1.7E-05 60.0 7.1 22 213-234 789-810 (1022)
413 3b5x_A Lipid A export ATP-bind 88.6 1.2 4E-05 53.5 10.1 24 212-235 368-391 (582)
414 3d3q_A TRNA delta(2)-isopenten 88.6 0.2 6.9E-06 54.5 3.0 22 214-235 8-29 (340)
415 3ake_A Cytidylate kinase; CMP 88.6 0.21 7.1E-06 50.9 3.0 22 214-235 3-24 (208)
416 2ehv_A Hypothetical protein PH 88.6 0.23 7.8E-06 52.4 3.4 24 212-235 29-52 (251)
417 3bgw_A DNAB-like replicative h 88.4 1.3 4.5E-05 50.7 9.9 52 212-267 196-247 (444)
418 1fx0_B ATP synthase beta chain 88.4 0.79 2.7E-05 52.1 7.7 63 198-266 155-218 (498)
419 1np6_A Molybdopterin-guanine d 88.4 0.25 8.6E-06 48.3 3.3 24 212-235 5-28 (174)
420 1b0u_A Histidine permease; ABC 88.3 0.25 8.6E-06 52.2 3.5 24 212-235 31-54 (262)
421 4eaq_A DTMP kinase, thymidylat 88.2 0.37 1.3E-05 49.7 4.6 25 212-236 25-49 (229)
422 3r20_A Cytidylate kinase; stru 88.2 0.25 8.7E-06 50.7 3.3 23 213-235 9-31 (233)
423 3end_A Light-independent proto 88.2 0.49 1.7E-05 51.7 5.8 44 211-256 39-82 (307)
424 3exa_A TRNA delta(2)-isopenten 88.2 0.24 8.3E-06 52.8 3.2 23 213-235 3-25 (322)
425 2olj_A Amino acid ABC transpor 88.2 0.26 8.9E-06 52.0 3.5 24 212-235 49-72 (263)
426 2dr3_A UPF0273 protein PH0284; 87.9 0.41 1.4E-05 50.2 4.9 40 212-253 22-61 (247)
427 1vpl_A ABC transporter, ATP-bi 87.8 0.29 9.9E-06 51.4 3.5 24 212-235 40-63 (256)
428 3gfo_A Cobalt import ATP-bindi 87.8 0.27 9.4E-06 52.2 3.3 23 213-235 34-56 (275)
429 3foz_A TRNA delta(2)-isopenten 87.7 0.29 1E-05 52.1 3.5 24 212-235 9-32 (316)
430 3p32_A Probable GTPase RV1496/ 87.7 0.75 2.6E-05 51.2 7.1 37 195-235 65-101 (355)
431 3crm_A TRNA delta(2)-isopenten 87.7 0.25 8.4E-06 53.4 2.9 23 213-235 5-27 (323)
432 1ak2_A Adenylate kinase isoenz 87.7 0.29 9.8E-06 50.9 3.4 23 213-235 16-38 (233)
433 4edh_A DTMP kinase, thymidylat 87.6 0.69 2.4E-05 46.9 6.1 23 213-235 6-28 (213)
434 2vp4_A Deoxynucleoside kinase; 87.6 0.28 9.5E-06 50.9 3.3 25 211-235 18-42 (230)
435 1a7j_A Phosphoribulokinase; tr 87.6 0.15 5.2E-06 54.9 1.2 24 212-235 4-27 (290)
436 2r8r_A Sensor protein; KDPD, P 87.6 0.56 1.9E-05 47.4 5.2 38 215-254 8-45 (228)
437 1mv5_A LMRA, multidrug resista 87.5 0.3 1E-05 51.0 3.4 24 212-235 27-50 (243)
438 1sgw_A Putative ABC transporte 87.5 0.25 8.6E-06 50.2 2.7 23 213-235 35-57 (214)
439 2xb4_A Adenylate kinase; ATP-b 87.5 0.26 8.9E-06 50.8 2.9 21 215-235 2-22 (223)
440 2zu0_C Probable ATP-dependent 87.5 0.31 1.1E-05 51.7 3.6 24 212-235 45-68 (267)
441 1e4v_A Adenylate kinase; trans 87.5 0.27 9.3E-06 50.3 3.1 21 215-235 2-22 (214)
442 3k1j_A LON protease, ATP-depen 87.5 0.36 1.2E-05 58.2 4.6 42 186-235 41-82 (604)
443 2ghi_A Transport protein; mult 87.5 0.31 1E-05 51.5 3.5 24 212-235 45-68 (260)
444 3b85_A Phosphate starvation-in 87.5 0.21 7.2E-06 50.6 2.1 22 214-235 23-44 (208)
445 2qe7_A ATP synthase subunit al 87.4 0.47 1.6E-05 54.0 5.1 86 213-302 162-263 (502)
446 2og2_A Putative signal recogni 87.4 0.3 1E-05 54.0 3.4 24 212-235 156-179 (359)
447 1ji0_A ABC transporter; ATP bi 87.4 0.3 1E-05 50.9 3.3 23 213-235 32-54 (240)
448 2v9p_A Replication protein E1; 87.4 0.32 1.1E-05 52.3 3.6 24 212-235 125-148 (305)
449 4g1u_C Hemin import ATP-bindin 87.3 0.3 1E-05 51.7 3.3 24 212-235 36-59 (266)
450 2ixe_A Antigen peptide transpo 87.3 0.31 1.1E-05 51.7 3.5 24 212-235 44-67 (271)
451 3sr0_A Adenylate kinase; phosp 87.2 0.29 9.9E-06 49.5 3.0 21 215-235 2-22 (206)
452 1g6h_A High-affinity branched- 87.2 0.31 1.1E-05 51.4 3.3 23 213-235 33-55 (257)
453 1yrb_A ATP(GTP)binding protein 87.1 0.34 1.2E-05 51.4 3.7 25 211-235 12-36 (262)
454 2d2e_A SUFC protein; ABC-ATPas 87.0 0.33 1.1E-05 50.9 3.4 23 213-235 29-51 (250)
455 2ff7_A Alpha-hemolysin translo 87.0 0.32 1.1E-05 50.8 3.3 23 213-235 35-57 (247)
456 2yz2_A Putative ABC transporte 87.0 0.33 1.1E-05 51.4 3.5 24 212-235 32-55 (266)
457 2eyu_A Twitching motility prot 87.0 0.49 1.7E-05 49.9 4.7 112 213-336 25-136 (261)
458 3zvl_A Bifunctional polynucleo 86.8 0.34 1.2E-05 55.3 3.6 25 211-235 256-280 (416)
459 2qi9_C Vitamin B12 import ATP- 86.7 0.34 1.2E-05 50.6 3.3 23 213-235 26-48 (249)
460 1cp2_A CP2, nitrogenase iron p 86.7 0.61 2.1E-05 49.7 5.4 39 214-254 2-40 (269)
461 3v9p_A DTMP kinase, thymidylat 86.7 0.63 2.2E-05 47.6 5.2 24 212-235 24-47 (227)
462 1oix_A RAS-related protein RAB 86.6 0.36 1.2E-05 48.3 3.3 24 213-236 29-52 (191)
463 2zej_A Dardarin, leucine-rich 86.5 0.32 1.1E-05 48.3 2.8 22 215-236 4-25 (184)
464 3ld9_A DTMP kinase, thymidylat 86.4 0.72 2.5E-05 47.0 5.4 26 211-236 19-44 (223)
465 3cmw_A Protein RECA, recombina 86.4 1.2 4E-05 59.2 8.7 85 211-302 1429-1518(1706)
466 3lv8_A DTMP kinase, thymidylat 86.4 0.84 2.9E-05 47.1 6.0 24 213-236 27-50 (236)
467 2nq2_C Hypothetical ABC transp 86.4 0.36 1.2E-05 50.6 3.3 23 213-235 31-53 (253)
468 2r9v_A ATP synthase subunit al 86.3 0.82 2.8E-05 52.0 6.3 86 213-302 175-276 (515)
469 2qmh_A HPR kinase/phosphorylas 86.3 0.37 1.3E-05 47.5 3.0 23 213-235 34-56 (205)
470 2wji_A Ferrous iron transport 86.2 0.39 1.3E-05 46.7 3.3 23 214-236 4-26 (165)
471 2ihy_A ABC transporter, ATP-bi 86.2 0.37 1.3E-05 51.3 3.3 23 213-235 47-69 (279)
472 1q3t_A Cytidylate kinase; nucl 86.2 0.41 1.4E-05 49.8 3.6 25 211-235 14-38 (236)
473 1ltq_A Polynucleotide kinase; 86.1 0.34 1.2E-05 52.8 3.1 22 214-235 3-24 (301)
474 1nlf_A Regulatory protein REPA 86.1 0.4 1.4E-05 51.5 3.5 24 212-235 29-52 (279)
475 1svm_A Large T antigen; AAA+ f 86.0 0.4 1.4E-05 53.4 3.6 24 212-235 168-191 (377)
476 2afh_E Nitrogenase iron protei 86.0 0.74 2.5E-05 49.6 5.6 39 214-254 3-41 (289)
477 2v3c_C SRP54, signal recogniti 86.0 0.49 1.7E-05 53.9 4.3 25 212-236 98-122 (432)
478 4tmk_A Protein (thymidylate ki 85.8 1 3.5E-05 45.7 6.1 24 213-236 3-26 (213)
479 3nh6_A ATP-binding cassette SU 85.6 0.38 1.3E-05 51.9 3.0 24 212-235 79-102 (306)
480 2bbs_A Cystic fibrosis transme 85.5 0.45 1.6E-05 50.9 3.6 24 212-235 63-86 (290)
481 2ocp_A DGK, deoxyguanosine kin 85.5 0.42 1.4E-05 49.9 3.3 23 213-235 2-24 (241)
482 3vr4_D V-type sodium ATPase su 85.5 0.88 3E-05 51.2 5.9 87 214-302 152-257 (465)
483 2j9r_A Thymidine kinase; TK1, 85.3 0.77 2.6E-05 46.0 4.8 112 212-334 27-139 (214)
484 1xx6_A Thymidine kinase; NESG, 85.2 0.41 1.4E-05 47.6 2.8 110 213-333 8-118 (191)
485 2f9l_A RAB11B, member RAS onco 85.1 0.41 1.4E-05 48.3 2.9 23 214-236 6-28 (199)
486 2dyk_A GTP-binding protein; GT 84.9 0.47 1.6E-05 45.6 3.2 23 214-236 2-24 (161)
487 2orw_A Thymidine kinase; TMTK, 84.9 0.9 3.1E-05 44.9 5.2 22 214-235 4-25 (184)
488 2pjz_A Hypothetical protein ST 84.7 0.46 1.6E-05 50.1 3.1 23 213-235 30-52 (263)
489 3eph_A TRNA isopentenyltransfe 84.6 0.49 1.7E-05 52.5 3.3 22 214-235 3-24 (409)
490 3io3_A DEHA2D07832P; chaperone 84.5 1 3.4E-05 49.7 5.8 42 211-254 16-59 (348)
491 3fvq_A Fe(3+) IONS import ATP- 84.4 0.55 1.9E-05 51.6 3.7 23 213-235 30-52 (359)
492 3gqb_B V-type ATP synthase bet 84.3 0.78 2.7E-05 51.5 4.8 90 213-302 147-260 (464)
493 3thx_A DNA mismatch repair pro 84.2 1.5 5.1E-05 55.0 7.8 22 212-233 661-682 (934)
494 2ck3_A ATP synthase subunit al 84.2 1.4 4.7E-05 50.3 6.8 101 197-302 151-271 (510)
495 3vkw_A Replicase large subunit 84.1 1.7 5.7E-05 49.0 7.4 26 210-235 158-183 (446)
496 2wjg_A FEOB, ferrous iron tran 84.1 0.64 2.2E-05 46.2 3.8 24 213-236 7-30 (188)
497 3qf4_A ABC transporter, ATP-bi 84.1 2.2 7.6E-05 51.0 9.1 24 212-235 368-391 (587)
498 2fz4_A DNA repair protein RAD2 84.1 3.3 0.00011 42.8 9.4 20 216-235 111-130 (237)
499 3sop_A Neuronal-specific septi 84.0 0.53 1.8E-05 49.9 3.3 21 215-235 4-24 (270)
500 3tui_C Methionine import ATP-b 84.0 0.58 2E-05 51.5 3.6 24 212-235 53-76 (366)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.9e-46 Score=448.83 Aligned_cols=317 Identities=16% Similarity=0.204 Sum_probs=258.4
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc--chhhhcccccEEEEEEcCCC--CHHHHHHHH
Q 037340 189 YGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN--DDRVQRHFQIKAWTCVSEDF--DVSRVTKSI 264 (1276)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 264 (1276)
|||++++++|.++|.... ++..++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.. +...+++.|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999996542 34679999999999999999999998 67899999999999999875 889999999
Q ss_pred HHHhhcccC------CCCCcHHHHHHHHHHHhcCC-cceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhh
Q 037340 265 LRSIADDQI------KDDDDLNSLQVKLKKQLSGK-KILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAE 337 (1276)
Q Consensus 265 ~~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~ 337 (1276)
+.+++.... ....+.+.+...+++.++++ ||||||||||+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986521 12234567789999999996 99999999999643344432 7999999999999998
Q ss_pred hcC-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhh
Q 037340 338 SMG-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTD 416 (1276)
Q Consensus 338 ~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~ 416 (1276)
.++ ...+|++++|+.+|||+||.+.++... .++++.+++++|+++|+|+||||+++|+.++.+ . .+|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 446799999999999999999987643 246788999999999999999999999999776 2 2333334333
Q ss_pred cccccccccchhHHHHHhHhcCcHHHHHHHh-----------hhcccCCCceechHHHHHHHHHc--CCCccccCCCCHH
Q 037340 417 IWNLREESCNILPALRVSYHFLAPQLKQCFA-----------YCSLVPKDYEFQEEEIILLWTAE--GFLDQEYNGRKME 483 (1276)
Q Consensus 417 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~~ 483 (1276)
.+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+++
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2456889999999999999999999 999999999999 8999999 9998765466778
Q ss_pred HHHHHHHHHHHhCCcccccCC-CCCcEEEcchHHHHHHHhhccceE
Q 037340 484 DLGREFVWELHSRSLFQQSSK-DASRFVMHDLINDLARWAAGELYF 528 (1276)
Q Consensus 484 ~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdli~~~~~~~~~~~~~ 528 (1276)
++++ |+++|+++||++.... ...+|+|||+||+||++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998653 356899999999999999887664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-45 Score=467.80 Aligned_cols=623 Identities=17% Similarity=0.056 Sum_probs=368.7
Q ss_pred HHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCccc-ccch--hhhccccccEEecCCccchhhhcccc-C
Q 037340 590 VLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQ-FLPD--SINSLYNLYTILLEDCYWLKKLCQDM-G 665 (1276)
Q Consensus 590 ~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~i-~ 665 (1276)
+.+.+.++++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|++++|.....+|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 445588888888888888888777888888888899998888887 4676 78888888999988886555566655 7
Q ss_pred CccccceeecccccccccC-ccc---cCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhh
Q 037340 666 NLTKLHHLINFNVLSLKEM-PKG---FGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQ 741 (1276)
Q Consensus 666 ~L~~L~~L~l~~~~~l~~l-p~~---i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~ 741 (1276)
++++|++|++++|. +... |.. ++++++|++|++..+.......... +..|+ .|.+....-. .... .
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---l~~L~-~L~Ls~n~l~----~~~~-~ 218 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLE-FLDVSSNNFS----TGIP-F 218 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTT---CTTCC-EEECCSSCCC----SCCC-B
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccCCccc---CCcCC-EEECcCCcCC----CCCc-c
Confidence 88888888888887 5443 333 6778888888665443222222222 22222 2222211110 0111 1
Q ss_pred cCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCC-CCccCCCCCCCceeEEEEccCCCC
Q 037340 742 LNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTK-FPVWLGDPSFSKLVLLRVLSCGMC 820 (1276)
Q Consensus 742 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~ 820 (1276)
+..+++|+.|+++.+.. .......+..+++|+.|+++++.... +|.+ .+++|+.|++++|.+.
T Consensus 219 l~~l~~L~~L~Ls~n~l------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKL------------SGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFT 282 (768)
T ss_dssp CTTCCSCCEEECCSSCC------------CSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEE
T ss_pred cccCCCCCEEECcCCcC------------CCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccC
Confidence 55666777777766544 12234456667777777777776542 2332 4677777777777766
Q ss_pred CCCCC-CCC-CCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEec
Q 037340 821 TSLPP-VGQ-LLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVG 898 (1276)
Q Consensus 821 ~~l~~-l~~-l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 898 (1276)
+.+|. ++. +++|+.|++++|.....++. .++. +++|+.|++++|.-...+... .+..+++|++|++++
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~-----l~~L~~L~L~~n~l~~~ip~~----~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGS-----CSLLESLALSSNNFSGELPMD----TLLKMRGLKVLDLSF 352 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGG-----CTTCCEEECCSSEEEEECCHH----HHTTCTTCCEEECCS
T ss_pred CccCHHHHhhcCcCCEEECcCCcCCCccch-HHhc-----CCCccEEECCCCcccCcCCHH----HHhcCCCCCEEeCcC
Confidence 55554 444 37777777777643333332 2222 677777777776422121111 145677777777777
Q ss_pred CCCCcCCCCCCC---C-CccEEEEecccCc---cccccC--CCCccEEEEccCCc--ccccccccCCCccEEEEccCCCc
Q 037340 899 CSELQGTLPERF---P-LLKKLVIVGCEQL---LVTIQC--LPVLSELHIDGCRR--VVFSSLINFSSLKSIFLRDIANQ 967 (1276)
Q Consensus 899 c~~L~~~~p~~l---~-~L~~L~i~~~~~l---~~~~~~--l~~L~~L~L~~~~~--~~~~~~~~l~~L~~L~L~~n~~l 967 (1276)
| .+.+.+|..+ + +|+.|.+.+|... ...+.. +++|++|++++|.. ..+..+.++++|+.|++++|...
T Consensus 353 n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 353 N-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp S-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred C-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 4 3555566533 2 6777777666422 222222 56677777777762 33455667777777777777522
Q ss_pred ccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcc
Q 037340 968 VVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSD 1047 (1276)
Q Consensus 968 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~ 1047 (1276)
..++.. ...+++|+.|++.++..... .+..+..+++|+.|++++|.-...+|.. +..++ +|+.|++++
T Consensus 432 ~~~p~~-l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~------l~~l~-~L~~L~L~~ 499 (768)
T 3rgz_A 432 GTIPSS-LGSLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGEIPSG------LSNCT-NLNWISLSN 499 (768)
T ss_dssp SCCCGG-GGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSCCCGG------GGGCT-TCCEEECCS
T ss_pred CcccHH-HhcCCCCCEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCcCCHH------HhcCC-CCCEEEccC
Confidence 222221 23455566666655543322 2555666777777777776433333311 11222 666666665
Q ss_pred cccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccce
Q 037340 1048 WEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLH 1127 (1276)
Q Consensus 1048 ~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~ 1127 (1276)
|.... .++......++|+. |.+.++...+.+|..+..+++|+.|++++|+..+.+|..+..+..+..
T Consensus 500 N~l~~-----------~~p~~~~~l~~L~~--L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~ 566 (768)
T 3rgz_A 500 NRLTG-----------EIPKWIGRLENLAI--LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566 (768)
T ss_dssp SCCCS-----------CCCGGGGGCTTCCE--EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred CccCC-----------cCChHHhcCCCCCE--EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence 43210 00100001112222 222233333344544445555555555555555555544433333322
Q ss_pred eeeccC----------------------------------------------CCCcccC-CCCCCCCCceeEeecCCCCc
Q 037340 1128 LEIGRC----------------------------------------------PSLVSFP-EDGFPTNLQSLEFEDLKISK 1160 (1276)
Q Consensus 1128 L~l~~c----------------------------------------------~~l~~l~-~~~~~~~L~~L~l~~n~~~~ 1160 (1276)
+.+..+ ..-..+| ..+.+++|+.|++++|.+.+
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g 646 (768)
T 3rgz_A 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646 (768)
T ss_dssp CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence 222110 0000011 11235789999999999999
Q ss_pred cccccccCCCCCcceEEecCCCCC--CccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCC
Q 037340 1161 PLFQWGLNRFNSLRKLKISGGFPD--LVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGL 1238 (1276)
Q Consensus 1161 ~~~~~~l~~l~~L~~L~Ls~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l 1238 (1276)
.+|.. ++++++|+.|+|++|... ++.....+++|++|+|++|+..+.+|..+.++++|++|++++|+.-..+|..+.
T Consensus 647 ~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 725 (768)
T 3rgz_A 647 YIPKE-IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725 (768)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSS
T ss_pred cCCHH-HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchh
Confidence 99876 899999999999998543 222223678999999999988889999999999999999999987778898888
Q ss_pred ccccccccccCChhHHH----hhccCCCCCCCcccCCCceE
Q 037340 1239 PKSLLRLIIDECPLIEK----RCRMDNAKYWPMITHIPCVR 1275 (1276)
Q Consensus 1239 ~~~L~~L~i~~cp~l~~----~c~~~~~~~~~~i~~~~~~~ 1275 (1276)
+.++....+.|||.|+. .|..+++++|+||+|+|.++
T Consensus 726 ~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 88888888999988763 58999999999999999864
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-39 Score=409.59 Aligned_cols=574 Identities=17% Similarity=0.075 Sum_probs=304.8
Q ss_pred CceEEEEecCccccc----cCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhcc--ccCCccccc
Q 037340 598 PRLRVFSLRGYCISK----LPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQ--DMGNLTKLH 671 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~----lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~ 671 (1276)
.+++.|+|+++.+.. +|.+|.+|++|++++++.+.+..+|+.++++++|++|+|++|.....+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCC
Confidence 578999999998774 78899999999999999999988899999999999999999966667787 899999999
Q ss_pred eeecccccccccCcccc-CCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCc
Q 037340 672 HLINFNVLSLKEMPKGF-GKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKA 750 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~~i-~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~ 750 (1276)
+|++++|.....+|..+ +++++|++|++..+..... .... ...+..+++|+.
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~--------------------------~~~~~~l~~L~~ 182 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA-NVVG--------------------------WVLSDGCGELKH 182 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE-THHH--------------------------HHHTTCCTTCCE
T ss_pred EEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCc-CChh--------------------------hhhhccCCCCCE
Confidence 99999998444556554 7889999887654431110 0000 011233344444
Q ss_pred eEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCC
Q 037340 751 LLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQL 829 (1276)
Q Consensus 751 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l 829 (1276)
|+++.+... .......+++|+.|+++++.....+..+. .+++|+.|++++|.+.+.+|. ++.+
T Consensus 183 L~Ls~n~l~--------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 183 LAISGNKIS--------------GDVDVSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp EECCSSEEE--------------SCCBCTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTTC
T ss_pred EECCCCccc--------------ccCCcccCCcCCEEECcCCcCCCCCcccc--cCCCCCEEECcCCcCCCcccHHHhcC
Confidence 444333220 00011334445555555544433222222 345555555555554433332 4455
Q ss_pred CCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCcccccc-CCCCccEEEEecCCCCcCCCCC
Q 037340 830 LFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVE-GFPKLQMLSLVGCSELQGTLPE 908 (1276)
Q Consensus 830 ~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~c~~L~~~~p~ 908 (1276)
++|+.|++++|.....++.. .+++|+.|++.+|. +...++.. +. .+++|++|++++|. +.+.+|.
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~-l~~~ip~~----~~~~~~~L~~L~Ls~n~-l~~~~p~ 312 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENK-FTGEIPDF----LSGACDTLTGLDLSGNH-FYGAVPP 312 (768)
T ss_dssp SSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSE-EEESCCCC----SCTTCTTCSEEECCSSE-EEECCCG
T ss_pred CCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCc-cCCccCHH----HHhhcCcCCEEECcCCc-CCCccch
Confidence 55555555554322221110 14455555555442 11111110 11 13455555555532 3333332
Q ss_pred ---CCCCccEEEEecccC---ccc-cccCCCCccEEEEccCCc--ccccccccCC-CccEEEEccCCCcccchhhhc-cC
Q 037340 909 ---RFPLLKKLVIVGCEQ---LLV-TIQCLPVLSELHIDGCRR--VVFSSLINFS-SLKSIFLRDIANQVVLAGLFE-QG 977 (1276)
Q Consensus 909 ---~l~~L~~L~i~~~~~---l~~-~~~~l~~L~~L~L~~~~~--~~~~~~~~l~-~L~~L~L~~n~~l~~~~~~~~-~~ 977 (1276)
.+++|+.|.+.+|.. ++. .+..+++|++|++++|.. ..+..+.+++ +|+.|++++|.....++.... ..
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 234444555444432 111 144455555555555542 2233344443 555555555542111111110 01
Q ss_pred CCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccC
Q 037340 978 LPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSS 1057 (1276)
Q Consensus 978 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~ 1057 (1276)
+++|+.|++.+|..... .+..+..+++|+.|++++|.-...+|. .+..++ +|+.|++++|....
T Consensus 393 ~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~-~L~~L~L~~n~l~~----- 456 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPS------SLGSLS-KLRDLKLWLNMLEG----- 456 (768)
T ss_dssp TCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCCG------GGGGCT-TCCEEECCSSCCCS-----
T ss_pred cCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCcccH------HHhcCC-CCCEEECCCCcccC-----
Confidence 33344444444332211 234444555555555555422111111 111222 45555555432110
Q ss_pred CCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCc
Q 037340 1058 GCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLV 1137 (1276)
Q Consensus 1058 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 1137 (1276)
.++......++|+.|++ .++.....+|..+..+++|++|++++|...+.+|..+..+++|++|++++|...+
T Consensus 457 ------~~p~~~~~l~~L~~L~L--~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 457 ------EIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp ------CCCGGGGGCTTCCEEEC--CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred ------cCCHHHcCCCCceEEEe--cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 00000001122222222 2222223344444445555555555555555555555555555555555555333
Q ss_pred ccCCC-CCCCCCceeEeecCCCCcccccc---------------------------------------------------
Q 037340 1138 SFPED-GFPTNLQSLEFEDLKISKPLFQW--------------------------------------------------- 1165 (1276)
Q Consensus 1138 ~l~~~-~~~~~L~~L~l~~n~~~~~~~~~--------------------------------------------------- 1165 (1276)
.+|.. +.+++|+.|++++|.+.+.+|..
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 44422 33455555555555544333321
Q ss_pred ------------------ccCCCCCcceEEecCCCCC--CccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceecc
Q 037340 1166 ------------------GLNRFNSLRKLKISGGFPD--LVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLD 1225 (1276)
Q Consensus 1166 ------------------~l~~l~~L~~L~Ls~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 1225 (1276)
.+..+++|++|++++|... ++.....+++|+.|+|++|...+.+|..++++++|++|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 2456788999999997432 11222267899999999988888999999999999999999
Q ss_pred CCCCCcccCCC-CCccccccccccCChh
Q 037340 1226 NCPKLKYFSKQ-GLPKSLLRLIIDECPL 1252 (1276)
Q Consensus 1226 ~c~~l~~l~~~-~l~~~L~~L~i~~cp~ 1252 (1276)
+|..-..+|.. .-.++|+.|++++|+.
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99654466653 2346899999999864
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-38 Score=375.62 Aligned_cols=286 Identities=19% Similarity=0.236 Sum_probs=231.7
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccccc-EEEEEEcCCCCHHHHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 265 (1276)
..|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3499999999999999753 23789999999999999999999987788999996 89999999999888888887
Q ss_pred HHhhccc---CCC-------CCcHHHHHHHHHHHh---cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 266 RSIADDQ---IKD-------DDDLNSLQVKLKKQL---SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 266 ~~l~~~~---~~~-------~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
+.+.... ... ..+.+.+.+.+++.+ .+||+||||||||+ .+.|+.+. +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEeccC
Confidence 7654321 101 123455667777766 68999999999998 46676542 68999999999
Q ss_pred hhhhhhcCCCCceecC------CCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCC-C
Q 037340 333 LGVAESMGVDPAYQLK------ELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRD-D 405 (1276)
Q Consensus 333 ~~v~~~~~~~~~~~l~------~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~-~ 405 (1276)
+.++..+.....+.++ +|+.+|||+||.+.. +.. ..++..+| |+|+||||+++|+.|+.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9988655444467777 999999999999883 221 12233333 9999999999999999875 5
Q ss_pred hhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHH-HHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHH
Q 037340 406 PRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQL-KQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMED 484 (1276)
Q Consensus 406 ~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 484 (1276)
.+.|+.. ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 6778753 13569999999999999999 99999999999999999999999999876 13
Q ss_pred HHHHHHHHHHhCCcccccCCCCCcEEEcchHHHHH
Q 037340 485 LGREFVWELHSRSLFQQSSKDASRFVMHDLINDLA 519 (1276)
Q Consensus 485 ~~~~~~~~L~~~sll~~~~~~~~~~~mHdli~~~~ 519 (1276)
.++.++++|+++||++... ...+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 4889999999999999853 457899999999855
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-36 Score=381.57 Aligned_cols=376 Identities=15% Similarity=0.086 Sum_probs=196.1
Q ss_pred CCCccEEEEeccCCCCC-CccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCC
Q 037340 781 NQALQELTILGYGGTKF-PVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVP 858 (1276)
Q Consensus 781 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~ 858 (1276)
.++|+.|+++++..... |.++.....++|+.|++++|.+....+. ++.+++|+.|++++|.. ..+.+..++.
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~----- 294 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI-QHLFSHSLHG----- 294 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB-SEECTTTTTT-----
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc-CccChhhhcC-----
Confidence 46788888888876554 4444421224599999999987765544 88899999999998854 4444433332
Q ss_pred CCCcceeecccccccccc----ccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCc
Q 037340 859 FPSLETLRFHDMQEWEEW----IPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVL 934 (1276)
Q Consensus 859 ~~~L~~L~l~~~~~l~~~----~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L 934 (1276)
+++|+.|++.++..-..+ .+......+..+++|++|++++| .+.+..|. .+..+++|
T Consensus 295 l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~------------------~~~~l~~L 355 (680)
T 1ziw_A 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN------------------MFTGLINL 355 (680)
T ss_dssp CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT------------------TTTTCTTC
T ss_pred CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh------------------HhccccCC
Confidence 788999998875321111 01101113567888888888884 46543332 23344555
Q ss_pred cEEEEccCCcc----ccccccc--CCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCC
Q 037340 935 SELHIDGCRRV----VFSSLIN--FSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISS 1008 (1276)
Q Consensus 935 ~~L~L~~~~~~----~~~~~~~--l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 1008 (1276)
++|++++|... ....+.. .++|+.|++++|......+ .....+++|+.|++.++..... ..+..+..+++
T Consensus 356 ~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~~l~~ 431 (680)
T 1ziw_A 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQE---LTGQEWRGLEN 431 (680)
T ss_dssp CEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEE---CCSGGGTTCTT
T ss_pred cEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccc---cCcccccCccc
Confidence 55555555310 0111211 2356666666665222111 1122344444444444332111 11245667778
Q ss_pred cceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCC
Q 037340 1009 LNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNL 1088 (1276)
Q Consensus 1009 L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l 1088 (1276)
|+.|++++|. +..++ ...+..+| +|+.|++.++ .+..+
T Consensus 432 L~~L~Ls~n~-l~~~~-----~~~~~~~~-~L~~L~l~~n-----------------------------------~l~~~ 469 (680)
T 1ziw_A 432 IFEIYLSYNK-YLQLT-----RNSFALVP-SLQRLMLRRV-----------------------------------ALKNV 469 (680)
T ss_dssp CCEEECCSCS-EEECC-----TTTTTTCT-TCCEEECTTS-----------------------------------CCBCT
T ss_pred ccEEecCCCC-cceeC-----hhhhhcCc-ccccchhccc-----------------------------------ccccc
Confidence 8888887773 22221 11111222 3444443332 12223
Q ss_pred cccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCC----------CCCCCCCceeEeecCCC
Q 037340 1089 ESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPE----------DGFPTNLQSLEFEDLKI 1158 (1276)
Q Consensus 1089 ~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~----------~~~~~~L~~L~l~~n~~ 1158 (1276)
..+|..+..+++|+.|++++|...+..|..+.++++|++|++++|. ++.++. ...+++|+.|++++|.+
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 3445555566677777777775554444556777777777777776 544421 12345566666666655
Q ss_pred CccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCC-CCCCCCcCceeccCCCCCcccCCCC
Q 037340 1159 SKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFSKQG 1237 (1276)
Q Consensus 1159 ~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~ 1237 (1276)
....+ ..+.++++|+.|++++| .++.+|.. +.++++|++|++++| .++.++...
T Consensus 549 ~~i~~-~~~~~l~~L~~L~Ls~N-----------------------~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 603 (680)
T 1ziw_A 549 DEIPV-EVFKDLFELKIIDLGLN-----------------------NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKV 603 (680)
T ss_dssp CCCCT-TTTTTCTTCCEEECCSS-----------------------CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHH
T ss_pred CCCCH-HHcccccCcceeECCCC-----------------------CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhH
Confidence 53222 22455555555555543 33344433 245555555555555 344444332
Q ss_pred C---ccccccccccCChhH
Q 037340 1238 L---PKSLLRLIIDECPLI 1253 (1276)
Q Consensus 1238 l---~~~L~~L~i~~cp~l 1253 (1276)
+ .++|+.|++++||..
T Consensus 604 ~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp HHHHHTTCSEEECTTCCCC
T ss_pred hcccccccCEEEccCCCcc
Confidence 1 234555555555554
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-36 Score=409.77 Aligned_cols=311 Identities=21% Similarity=0.317 Sum_probs=249.8
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh-hccc-ccEEEEEEcCCCC--HHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV-QRHF-QIKAWTCVSEDFD--VSR 259 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ 259 (1276)
....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 45679999999999999997542 46799999999999999999999997544 4445 5677999988543 444
Q ss_pred HHHHHHHHhhcccC---CCCCcHHHHHHHHHHHhcCC--cceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh
Q 037340 260 VTKSILRSIADDQI---KDDDDLNSLQVKLKKQLSGK--KILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG 334 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 334 (1276)
.+..++..+..... ....+.+.+.+.++..+.++ |+||||||||+. +.|..+ .+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 56677777765432 23567788899999999877 999999999874 455443 47899999999999
Q ss_pred hhhh-cCCCCceecCC-CChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHH
Q 037340 335 VAES-MGVDPAYQLKE-LSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFV 412 (1276)
Q Consensus 335 v~~~-~~~~~~~~l~~-L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~ 412 (1276)
++.. .+....+.+++ |+++||++||...++.. .+.+++++++|+++|+|+||||+++|++|+.++ ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9855 45667899996 99999999999887432 234456799999999999999999999998875 467777
Q ss_pred Hhhhccccc--------ccccchhHHHHHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHHH
Q 037340 413 LNTDIWNLR--------EESCNILPALRVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKMED 484 (1276)
Q Consensus 413 l~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 484 (1276)
++....... .....+..+|.+||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 665432211 1114589999999999999999999999999999999999999999654 36
Q ss_pred HHHHHHHHHHhCCcccccCC-CCCcEEEcchHHHHHHHhhccc
Q 037340 485 LGREFVWELHSRSLFQQSSK-DASRFVMHDLINDLARWAAGEL 526 (1276)
Q Consensus 485 ~~~~~~~~L~~~sll~~~~~-~~~~~~mHdli~~~~~~~~~~~ 526 (1276)
.++.++++|+++||++.... ...+|+||+++|++++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 68999999999999997643 2336999999999999987765
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-34 Score=359.29 Aligned_cols=506 Identities=16% Similarity=0.096 Sum_probs=280.4
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
+.|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777777777777664 3677777777777777777766 445777777777777777433333666777777777777
Q ss_pred ccccccccCc-cccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEE
Q 037340 676 FNVLSLKEMP-KGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLE 754 (1276)
Q Consensus 676 ~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 754 (1276)
++|. +..+| ..++++++|++|++..+
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n---------------------------------------------------- 138 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVAHN---------------------------------------------------- 138 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECCSS----------------------------------------------------
T ss_pred cCCc-cccccccccCCCCCCCEEeCCCC----------------------------------------------------
Confidence 7776 55554 34555555555532211
Q ss_pred ecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCcc-CCCCCCCc----eeEEEEccCCCCCCCCCCCCC
Q 037340 755 WSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVW-LGDPSFSK----LVLLRVLSCGMCTSLPPVGQL 829 (1276)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~----L~~L~L~~~~~~~~l~~l~~l 829 (1276)
.. . ....+..+..+++|+.|+++++....++.. +. .+.+ +..|++++|.+....+.....
T Consensus 139 --~l----~-------~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~~l~~L~l~~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 139 --FI----H-------SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQG 203 (606)
T ss_dssp --CC----C-------CCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH--HHHHCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred --cc----c-------ceechHhHhhcCCCCEEEccCCcceecChhhhh--hhhccccccceeeccCCCcceeCcccccC
Confidence 00 0 000112233445555555555544333221 11 1122 224445444443322222222
Q ss_pred CCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecC--C---CCcC
Q 037340 830 LFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGC--S---ELQG 904 (1276)
Q Consensus 830 ~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c--~---~L~~ 904 (1276)
.+|+.|++++|.......+.. +..+++|+.+.+... . .+..
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~----------------------------------~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTC----------------------------------LQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHH----------------------------------HHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ceeeeeeccCCccchhHHHHH----------------------------------hccccccccccccccccccCCcccc
Confidence 244444444442211111111 233444444443221 0 0000
Q ss_pred CCCCCCC-----CccEEEEecccCcc---ccccCCCCccEEEEccCCcccccccccCCCccEEEEccCCCcccchhhhcc
Q 037340 905 TLPERFP-----LLKKLVIVGCEQLL---VTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQ 976 (1276)
Q Consensus 905 ~~p~~l~-----~L~~L~i~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~ 976 (1276)
.-+..+. .++.+.+..+..+. ..+..+++|+.|++++|.....+.+..+++|++|++++|.. ..++. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-- 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-- 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C--
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C--
Confidence 0000111 23333332322221 12555677778888777755555677777888888888764 33442 2
Q ss_pred CCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEccccccccccc
Q 037340 977 GLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSS 1056 (1276)
Q Consensus 977 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~ 1056 (1276)
.+++|+.|++.++..... ..+..+++|+.|++++|. ++..... ...+..++ +|+.|++++|.
T Consensus 326 ~l~~L~~L~l~~n~~~~~------~~~~~l~~L~~L~ls~n~-l~~~~~~---~~~~~~~~-~L~~L~L~~n~------- 387 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSIS------FKKVALPSLSYLDLSRNA-LSFSGCC---SYSDLGTN-SLRHLDLSFNG------- 387 (606)
T ss_dssp CCSSCCEEEEESCSSCEE------CCCCCCTTCCEEECCSSC-EEEEEEC---CHHHHCCS-CCCEEECCSCS-------
T ss_pred CCCccceeeccCCcCccc------hhhccCCCCCEEECcCCc-cCCCcch---hhhhccCC-cccEeECCCCc-------
Confidence 667777777777643322 245678888888888873 2221100 00011222 55555555432
Q ss_pred CCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCccc-ccCCCCCccceeeeccCCC
Q 037340 1057 SGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALP-NSMHNLTSLLHLEIGRCPS 1135 (1276)
Q Consensus 1057 ~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~ 1135 (1276)
+..+|..+..+++|+.|++++|...+..| ..+.++++|++|++++|..
T Consensus 388 -------------------------------l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 388 -------------------------------AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp -------------------------------EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred -------------------------------cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 33344455566778888888876666555 5677788888888888773
Q ss_pred CcccCC-CCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCcc--CCCCCCCcCeeeccCCCCCccccCC
Q 037340 1136 LVSFPE-DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVS--SPRFPASLTELKISDMPSLERLSSI 1212 (1276)
Q Consensus 1136 l~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~ 1212 (1276)
....|. .+.+++|++|++++|.+.+......+..+++|+.|++++|...-.. ....+++|++|++++|......|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 333332 2456778888888887776322223777788888888876433221 1235678888888887655555777
Q ss_pred CCCCCCcCceeccCCCCCcccCCC--CCccccccccccCChhHHHhhccCCC
Q 037340 1213 GENLTSLKFLDLDNCPKLKYFSKQ--GLPKSLLRLIIDECPLIEKRCRMDNA 1262 (1276)
Q Consensus 1213 ~~~l~~L~~L~l~~c~~l~~l~~~--~l~~~L~~L~i~~cp~l~~~c~~~~~ 1262 (1276)
+.++++|++|++++|. ++.+|.. .+|++|+.|++++||.. |.|+..
T Consensus 517 ~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~---c~c~~~ 564 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA---CICEHQ 564 (606)
T ss_dssp TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC---CSSTTH
T ss_pred ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc---cCCccH
Confidence 7888888888888884 7777764 33456888888888776 555443
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=344.54 Aligned_cols=306 Identities=24% Similarity=0.363 Sum_probs=236.2
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhh-hccc-ccEEEEEEcCCCCHHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRV-QRHF-QIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 262 (1276)
...||||+.++++|.++|... .+..++|+|+||||+||||||++++++.++ ..+| +.++|++++.. +...+..
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 356999999999999999643 245789999999999999999999997666 7889 47999999865 3444444
Q ss_pred HH---HHHhhccc---CCCCCcHHHHHHHHHHHhcC--CcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh
Q 037340 263 SI---LRSIADDQ---IKDDDDLNSLQVKLKKQLSG--KKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG 334 (1276)
Q Consensus 263 ~i---~~~l~~~~---~~~~~~~~~~~~~l~~~l~~--kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 334 (1276)
.+ +..+.... .....+.+.....++..+.+ +++||||||+|+. ..+.. + .+|++||||||++.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcH
Confidence 43 33443211 12345677788888888876 7999999999874 33332 2 46899999999998
Q ss_pred hhhhcCCCCceec---CCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHH
Q 037340 335 VAESMGVDPAYQL---KELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEF 411 (1276)
Q Consensus 335 v~~~~~~~~~~~l---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~ 411 (1276)
++..+. ...+++ ++|+.+|+++||.+.++.. .+...+.+.+|+++|+|+||||+++|+.++.++ ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876644 334444 5899999999999987642 122346789999999999999999999998874 46887
Q ss_pred HHhhhcccc--------cccccchhHHHHHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCccccCCCCHH
Q 037340 412 VLNTDIWNL--------REESCNILPALRVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLDQEYNGRKME 483 (1276)
Q Consensus 412 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 483 (1276)
.+....... ......+..++.+||+.||++.|.||++||+||+++.|+.+.++.+|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 766543221 11224688999999999999999999999999999999999999999542 2
Q ss_pred HHHHHHHHHHHhCCcccccCC-CCCcEEEcchHHHHHHHhhc
Q 037340 484 DLGREFVWELHSRSLFQQSSK-DASRFVMHDLINDLARWAAG 524 (1276)
Q Consensus 484 ~~~~~~~~~L~~~sll~~~~~-~~~~~~mHdli~~~~~~~~~ 524 (1276)
+.+..++++|+++||++.... ...+|+||++++++++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 457889999999999986542 33579999999999998743
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7e-33 Score=350.07 Aligned_cols=525 Identities=18% Similarity=0.131 Sum_probs=309.3
Q ss_pred CceEEEEecCccccccCc-ccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhcc-ccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLPN-EIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 674 (1276)
+++++|+|++|.++.+|. .|+++++|++|+|++|.+..+ |..++++++|++|++++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 689999999999998864 699999999999999999877 677999999999999999 6777776 599999999999
Q ss_pred cccccccccCc-cccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 675 NFNVLSLKEMP-KGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 675 l~~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
+++|. +..+| ..++++++|++|++..+.... .....+..+++|+.|.+
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------------------------~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS------------------------------TKLGTQVQLENLQELLL 152 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC------------------------------CCCCSSSCCTTCCEEEC
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCCcccc------------------------------cCchhhcccccCCEEEc
Confidence 99998 77776 458899999888654432100 00112345667788877
Q ss_pred EecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCc-cCCCCCCCceeEEEEccCCCCCCC----CCCCC
Q 037340 754 EWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPV-WLGDPSFSKLVLLRVLSCGMCTSL----PPVGQ 828 (1276)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l----~~l~~ 828 (1276)
..+... ... ...+. ....++|+.|+++++....++. ++. .+++|+.|++.++...... +....
T Consensus 153 ~~n~l~----~~~-----~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~l~ 220 (680)
T 1ziw_A 153 SNNKIQ----ALK-----SEELD-IFANSSLKKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTEKLCLELA 220 (680)
T ss_dssp CSSCCC----CBC-----HHHHG-GGTTCEESEEECTTCCCCCBCTTGGG--GSSEECEEECTTCCCHHHHHHHHHHHHT
T ss_pred cCCccc----ccC-----HHHhh-ccccccccEEECCCCcccccChhhhh--hhhhhhhhhccccccChhhHHHHHHHhh
Confidence 765431 000 00000 1124678888887776655433 332 4567777777666542110 00002
Q ss_pred CCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCC
Q 037340 829 LLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPE 908 (1276)
Q Consensus 829 l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 908 (1276)
.++|+.|++++|. +..+.+..+.. ...++|+.|+++++. +....+. .++.+++|++|++++| .+.+..|.
T Consensus 221 ~~~L~~L~L~~n~-l~~~~~~~~~~---l~~~~L~~L~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (680)
T 1ziw_A 221 NTSIRNLSLSNSQ-LSTTSNTTFLG---LKWTNLTMLDLSYNN-LNVVGND----SFAWLPQLEYFFLEYN-NIQHLFSH 290 (680)
T ss_dssp TSCCCEEECTTSC-CCEECTTTTGG---GGGSCCCEEECTTSC-CCEECTT----TTTTCTTCCEEECCSC-CBSEECTT
T ss_pred hccccEEEccCCc-ccccChhHhhc---cCcCCCCEEECCCCC-cCccCcc----cccCcccccEeeCCCC-ccCccChh
Confidence 3567777777763 33333332221 001347777777763 2222221 2556777777777774 35434442
Q ss_pred ---CCCCccEEEEecccC--------cc----ccccCCCCccEEEEccCCcc--cccccccCCCccEEEEccCCC-cccc
Q 037340 909 ---RFPLLKKLVIVGCEQ--------LL----VTIQCLPVLSELHIDGCRRV--VFSSLINFSSLKSIFLRDIAN-QVVL 970 (1276)
Q Consensus 909 ---~l~~L~~L~i~~~~~--------l~----~~~~~l~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~n~~-l~~~ 970 (1276)
.+++|+.|.+.++.. ++ ..+..+++|++|++++|... ....+.++++|++|++++|.. ...+
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 345555665554321 11 13455666667776666522 233456666666666666541 1111
Q ss_pred hhhhcc--CCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEccc
Q 037340 971 AGLFEQ--GLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDW 1048 (1276)
Q Consensus 971 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~ 1048 (1276)
+...+. ..++|+.|++.++..... .+..+..+++|+.|++++|.-...++
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------ 422 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKI----ESDAFSWLGHLEVLDLGLNEIGQELT------------------------ 422 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCEEECC------------------------
T ss_pred chhhhcccccCcCceEECCCCCCCeE----ChhhhhCCCCCCEEeCCCCcCccccC------------------------
Confidence 111111 113444444444432222 13445555555555555542211111
Q ss_pred ccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCcccee
Q 037340 1049 EQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHL 1128 (1276)
Q Consensus 1049 ~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 1128 (1276)
+..+..+++|++|++++|......+..+..+++|++|
T Consensus 423 -------------------------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 423 -------------------------------------------GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp -------------------------------------------SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred -------------------------------------------cccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 0112234566666666665444445556666666666
Q ss_pred eeccCCCC--cccCC-CCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCc----------cCCCCCCCc
Q 037340 1129 EIGRCPSL--VSFPE-DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLV----------SSPRFPASL 1195 (1276)
Q Consensus 1129 ~l~~c~~l--~~l~~-~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~----------~~~~~~~~L 1195 (1276)
++++|..- ..+|. ...+++|+.|++++|.+.+..+.. +.++++|++|++++|..... .....+++|
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh-hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 66666511 12222 134556666666666665544432 56666666666666532211 112356788
Q ss_pred CeeeccCCCCCccccCC-CCCCCCcCceeccCCCCCcccCCCCC--ccccccccccCC
Q 037340 1196 TELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFSKQGL--PKSLLRLIIDEC 1250 (1276)
Q Consensus 1196 ~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~c 1250 (1276)
++|++++| .++.+|.. +.++++|++|++++| .++.+|...+ .++|+.|++++|
T Consensus 539 ~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 539 HILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 88999885 56688864 689999999999988 6888888654 378999999988
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-33 Score=348.57 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=78.4
Q ss_pred ceEEEEecCcccccc-CcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccceeecc
Q 037340 599 RLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINF 676 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 676 (1276)
.+++|+|++|.++.+ |..|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..++.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 688888888888877 56788888888888888888866 6778888888888888885444457778888888888888
Q ss_pred cccccccC-ccccCCccccccCCc
Q 037340 677 NVLSLKEM-PKGFGKLTCLLTLRR 699 (1276)
Q Consensus 677 ~~~~l~~l-p~~i~~L~~L~~L~~ 699 (1276)
+|. +..+ |..++++++|++|++
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEEC
T ss_pred ccC-cccCCcchhccCCcccEEEC
Confidence 887 6665 445777777776654
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-33 Score=348.29 Aligned_cols=503 Identities=18% Similarity=0.145 Sum_probs=277.3
Q ss_pred CCcceeeccccccCCcchhhHHHH-hcCCCCceEEEEecCcccccc-CcccccccccceeeccCCccccc-chhhhcccc
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQ-MLLNLPRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYN 645 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~-~l~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~ 645 (1276)
++++.|.+.++.. ....+ .|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++
T Consensus 32 ~~l~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPL------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCc------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 7899999988753 12233 489999999999999999988 67899999999999999999988 888999999
Q ss_pred ccEEecCCccchhhhc-cccCCccccceeecccccccc--cCccccCCccccccCCceEeccCCCCCchhhccccccccc
Q 037340 646 LYTILLEDCYWLKKLC-QDMGNLTKLHHLINFNVLSLK--EMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGT 722 (1276)
Q Consensus 646 L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~ 722 (1276)
|++|++++| .+..+| ..++++++|++|++++|. +. .+|..++++++|++|++..+.... .....+..+..++
T Consensus 106 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~-- 180 (606)
T 3vq2_A 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENP-- 180 (606)
T ss_dssp CCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCT--
T ss_pred CCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccc--
Confidence 999999999 555555 779999999999999998 65 478889999999998765432111 0011111111111
Q ss_pred eeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCC
Q 037340 723 LQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLG 802 (1276)
Q Consensus 723 L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 802 (1276)
..+..|+++++....+|....
T Consensus 181 -----------------------------------------------------------~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 181 -----------------------------------------------------------QVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp -----------------------------------------------------------TCCCEEECTTCCCCEECTTTT
T ss_pred -----------------------------------------------------------cccceeeccCCCcceeCcccc
Confidence 012234444444443433332
Q ss_pred CCCCCceeEEEEccCCCCC-CCCC-CCCCCCcceeeecCCCC-----ceeeCCcccCCCCCCCCCCcceeeccccccccc
Q 037340 803 DPSFSKLVLLRVLSCGMCT-SLPP-VGQLLFLKHLEISGMDG-----VKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEE 875 (1276)
Q Consensus 803 ~~~l~~L~~L~L~~~~~~~-~l~~-l~~l~~L~~L~L~~~~~-----~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 875 (1276)
...+|+.|++++|.... ..|. ++++++|+.+.+..... +..+....+.. .. --.++.+.+.....+..
T Consensus 202 --~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~--l~-~l~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 202 --QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG--LC-DVTIDEFRLTYTNDFSD 276 (606)
T ss_dssp --TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT--GG-GSEEEEEEECCCTTCCG
T ss_pred --cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh--hh-hccHhheeccccccccc
Confidence 12255555555554431 1111 44455555544432110 00000110000 00 00233333323333333
Q ss_pred cccCCccccccCCCCccEEEEecCCCCcCCCC--CCCCCccEEEEecccC--ccccccCCCCccEEEEccCCcccccccc
Q 037340 876 WIPRGAGQAVEGFPKLQMLSLVGCSELQGTLP--ERFPLLKKLVIVGCEQ--LLVTIQCLPVLSELHIDGCRRVVFSSLI 951 (1276)
Q Consensus 876 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p--~~l~~L~~L~i~~~~~--l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 951 (1276)
..+. +..+++|+.|+++++. +. .+| ..+++|+.|.+.+|.. ++ .+ .+++|++|++++|.......+.
T Consensus 277 ~~~~-----~~~l~~L~~L~l~~~~-~~-~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 277 DIVK-----FHCLANVSAMSLAGVS-IK-YLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp GGGS-----CGGGTTCSEEEEESCC-CC-CCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCC
T ss_pred cccc-----cccCCCCCEEEecCcc-ch-hhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhc
Confidence 2222 4456666666666643 33 333 1233444555544432 11 12 4555566666655433333445
Q ss_pred cCCCccEEEEccCCCcccc-hhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCccccccccccc
Q 037340 952 NFSSLKSIFLRDIANQVVL-AGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHD 1030 (1276)
Q Consensus 952 ~l~~L~~L~L~~n~~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~ 1030 (1276)
.+++|++|++++|...... .......+++|+.|++.++.... .+..+..+++|+.|++++|.- ...
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l-~~~------- 414 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-----MSANFMGLEELQHLDFQHSTL-KRV------- 414 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-----ECCCCTTCTTCCEEECTTSEE-EST-------
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-----chhhccCCCCCCeeECCCCcc-CCc-------
Confidence 5556666666655421100 01111233444444444333111 123344445555555544411 000
Q ss_pred ccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccC-CCCCCCCCeeEEEEeec
Q 037340 1031 QQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFP-EEGLPSTKLTELMIWSC 1109 (1276)
Q Consensus 1031 ~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p-~~~~~~~~L~~L~l~~~ 1109 (1276)
.| ..+..+++|++|++++|
T Consensus 415 ------------------------------------------------------------~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 415 ------------------------------------------------------------TEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ------------------------------------------------------------TTTTTTTTCTTCCEEECTTS
T ss_pred ------------------------------------------------------------cChhhhhccccCCEEECcCC
Confidence 11 12334456666666666
Q ss_pred CCCCcccccCCCCCccceeeeccCCCCcc-cCCC-CCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCc-
Q 037340 1110 ENLKALPNSMHNLTSLLHLEIGRCPSLVS-FPED-GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLV- 1186 (1276)
Q Consensus 1110 ~~l~~lp~~l~~l~~L~~L~l~~c~~l~~-l~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~- 1186 (1276)
...+..|..+.++++|++|++++|..... +|.. +.+++|++|++++|.+.+..+.. +.++++|+.|++++|...-.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCEE
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh-hcccccCCEEECCCCcCCCcC
Confidence 65555666666666666666666662221 3322 44566666666666666555443 56666677777766533221
Q ss_pred -cCCCCCCCcCeeeccCCCCCccccCCCCCCC-CcCceeccCCCCC
Q 037340 1187 -SSPRFPASLTELKISDMPSLERLSSIGENLT-SLKFLDLDNCPKL 1230 (1276)
Q Consensus 1187 -~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l 1230 (1276)
.....+++|++|++++|. ++.+|..+..++ +|++|++++||-.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp GGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred HHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 122245677777777754 667887777776 5888888888743
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-32 Score=338.29 Aligned_cols=125 Identities=11% Similarity=0.002 Sum_probs=102.2
Q ss_pred CCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCcccccc-CcccccccccceeeccCCccccc-chhhhccccc
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNL 646 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L 646 (1276)
..++.|.+.++.. ..-.+..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.+..+ |..|+++++|
T Consensus 33 ~~l~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVL-----PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCC-----SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCcc-----CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 3689999988753 111233499999999999999999877 78899999999999999999876 7789999999
Q ss_pred cEEecCCccchhhh-ccccCCccccceeecccccccccCc-cccCCccccccCCce
Q 037340 647 YTILLEDCYWLKKL-CQDMGNLTKLHHLINFNVLSLKEMP-KGFGKLTCLLTLRRF 700 (1276)
Q Consensus 647 ~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~~~ 700 (1276)
++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..+++|++|++.
T Consensus 108 ~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 108 KHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp CEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECC
T ss_pred cEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcc
Confidence 99999999 45555 6779999999999999998 77653 334448888888654
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-31 Score=337.53 Aligned_cols=505 Identities=16% Similarity=0.098 Sum_probs=254.6
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCC-ccccc-chhhhccccccEEecCCccchhhhccccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGT-SIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~-~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 674 (1276)
++|++|||++|.|+.+ |..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|......|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4555666666655544 455556666666666655 23344 44555666666666665533233355555666666666
Q ss_pred ccccccccc-Cccc--cCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCce
Q 037340 675 NFNVLSLKE-MPKG--FGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKAL 751 (1276)
Q Consensus 675 l~~~~~l~~-lp~~--i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L 751 (1276)
+++|. +.. +|.. ++++++|+ .|
T Consensus 104 Ls~n~-l~~~~~~~~~~~~L~~L~------------------------------------------------------~L 128 (844)
T 3j0a_A 104 LYFCG-LSDAVLKDGYFRNLKALT------------------------------------------------------RL 128 (844)
T ss_dssp CTTCC-CSSCCSTTCCCSSCSSCC------------------------------------------------------EE
T ss_pred CcCCC-CCcccccCccccccCCCC------------------------------------------------------EE
Confidence 65554 322 2322 34444444 44
Q ss_pred EEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCC-CccCCCCCC--CceeEEEEccCCCCCCCCC-CC
Q 037340 752 LLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKF-PVWLGDPSF--SKLVLLRVLSCGMCTSLPP-VG 827 (1276)
Q Consensus 752 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l--~~L~~L~L~~~~~~~~l~~-l~ 827 (1276)
+++.+... . ......+..+++|+.|+++++..... |..+. .+ ++|+.|++++|.+....|. ++
T Consensus 129 ~Ls~N~l~----~-------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~--~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 129 DLSKNQIR----S-------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp EEESCCCC----C-------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH--HHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred ECCCCccc----c-------cccchhHhhCCCCCEEECCCCcCCeeCHHHcc--cccCCccceEECCCCccccccccchh
Confidence 44333220 0 00113456677888888888765543 33332 23 6788888888877665543 44
Q ss_pred CCCC------cceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccC----CccccccC--CCCccEEE
Q 037340 828 QLLF------LKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPR----GAGQAVEG--FPKLQMLS 895 (1276)
Q Consensus 828 ~l~~------L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~~~--~~~L~~L~ 895 (1276)
.+++ |+.|++++|.....++..+... ....+++.|.+..+..-..+... .....+.. .++|+.|+
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHHHhh---cCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 4444 7888887774333333322211 11245666665532111000000 00001111 25666666
Q ss_pred EecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcc--cccccccCCCccEEEEccCCCcccchhh
Q 037340 896 LVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRV--VFSSLINFSSLKSIFLRDIANQVVLAGL 973 (1276)
Q Consensus 896 l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~n~~l~~~~~~ 973 (1276)
+++|. +.+..| ..+..+++|+.|++++|... ....+.++++|++|++++|... .+...
T Consensus 273 Ls~n~-l~~~~~------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 332 (844)
T 3j0a_A 273 LSHGF-VFSLNS------------------RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSS 332 (844)
T ss_dssp CTTCC-CCEECS------------------CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSC
T ss_pred CCCCc-ccccCh------------------hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHH
Confidence 66633 332222 22344555555555555522 2234555556666666655421 11111
Q ss_pred hccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccc
Q 037340 974 FEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIR 1053 (1276)
Q Consensus 974 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~ 1053 (1276)
....+++|+.|++.++.-. ...+..+..+++|+.|++++| .++.++ .+ ++|+.|+++++.-
T Consensus 333 ~~~~l~~L~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N-~l~~i~----------~~-~~L~~L~l~~N~l--- 393 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIA----IIQDQTFKFLEKLQTLDLRDN-ALTTIH----------FI-PSIPDIFLSGNKL--- 393 (844)
T ss_dssp SCSSCTTCCEEECCSCCCC----CCCSSCSCSCCCCCEEEEETC-CSCCCS----------SC-CSCSEEEEESCCC---
T ss_pred HhcCCCCCCEEECCCCCCC----ccChhhhcCCCCCCEEECCCC-CCCccc----------CC-CCcchhccCCCCc---
Confidence 2223444444444443221 112334566666666666665 232222 12 2566666655321
Q ss_pred cccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccc-cCCCCCccceeeecc
Q 037340 1054 GSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPN-SMHNLTSLLHLEIGR 1132 (1276)
Q Consensus 1054 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~ 1132 (1276)
+.++. ...+++.|+++.+....+... ..+..+++|+.|++++|......+. .+..+++|+.|++++
T Consensus 394 ---------~~l~~---~~~~l~~L~ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 394 ---------VTLPK---INLTANLIHLSENRLENLDIL-YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460 (844)
T ss_dssp ---------CCCCC---CCTTCCEEECCSCCCCSSTTH-HHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred ---------ccccc---cccccceeecccCccccCchh-hhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence 11111 122334444433332222211 0123467788888888855443222 345577888888888
Q ss_pred CCCCcccCC-------CCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCC
Q 037340 1133 CPSLVSFPE-------DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPS 1205 (1276)
Q Consensus 1133 c~~l~~l~~-------~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~ 1205 (1276)
|. +..++. ...+++|+.|+|++|.+.+..+.. +.++++|+.|+|++|...........++|+.|++++|..
T Consensus 461 N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 461 NM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538 (844)
T ss_dssp CC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS-SSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECC
T ss_pred Cc-cccccccccchhhhcCcccccEEECCCCcccccChhH-ccchhhhheeECCCCCCCccChhhhhccccEEECCCCcC
Confidence 77 443321 123577888888888777666553 677788888888877444333333447788888887655
Q ss_pred CccccCCCCCCCCcCceeccCCCCC
Q 037340 1206 LERLSSIGENLTSLKFLDLDNCPKL 1230 (1276)
Q Consensus 1206 l~~l~~~~~~l~~L~~L~l~~c~~l 1230 (1276)
.+..|. .+.+|+.|++++||-.
T Consensus 539 ~~~~~~---~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 539 LAPNPD---VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCSC---CCSSCCEEEEEEECCC
T ss_pred CCCChh---HhCCcCEEEecCCCcc
Confidence 444443 2456777777777643
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.4e-30 Score=331.08 Aligned_cols=510 Identities=17% Similarity=0.123 Sum_probs=285.3
Q ss_pred CCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCcc-cccc-CcccccccccceeeccCCccccc-chhhhcc
Q 037340 567 GVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYC-ISKL-PNEIGNLKHLRFLNLSGTSIQFL-PDSINSL 643 (1276)
Q Consensus 567 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~-i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L 643 (1276)
-.++++.|.+..+.. .......|.++++|++|+|++|. +..+ |..|+++++|++|+|++|.|..+ |..|+++
T Consensus 22 lp~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 457899999988752 12223349999999999999994 5567 78899999999999999999977 8889999
Q ss_pred ccccEEecCCccchhhhccc--cCCccccceeecccccccccCc--cccCCccccccCCceEeccCCCCCchhhccc--c
Q 037340 644 YNLYTILLEDCYWLKKLCQD--MGNLTKLHHLINFNVLSLKEMP--KGFGKLTCLLTLRRFVVGKDSGSSLRELRSL--M 717 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L--~ 717 (1276)
++|++|+|++|.....+|.. +.++++|++|++++|. +..++ ..++++++|++|++..+.... .....+..+ .
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCC
Confidence 99999999999544446655 8999999999999998 66653 468999999999776543221 111222222 2
Q ss_pred ccccceeeecccCCCCchhhhhhhcCCC------CCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEec
Q 037340 718 HLQGTLQISMLENVKDVGDASEAQLNSK------VNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILG 791 (1276)
Q Consensus 718 ~L~~~L~i~~~~~~~~~~~~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 791 (1276)
+|+ .+.+....-.. .....+..+ ..|+.|+++.+..... ....+........+..|.+..
T Consensus 175 ~L~-~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---------~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 175 TLS-FFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVD---------ITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp SSC-CCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT---------TTSGGGGTSCSCCBSEEECCS
T ss_pred ccc-eEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchh---------HHHHHHhhcCcccccceeccc
Confidence 222 22221110000 000001111 1244444443321000 000001111122344444331
Q ss_pred cCCC------CC----CccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCC
Q 037340 792 YGGT------KF----PVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFP 860 (1276)
Q Consensus 792 ~~~~------~~----p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~ 860 (1276)
+... .+ +..+.....++|+.|++++|.+....+. ++.+++|+.|+|++|. +..+....++. ++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~-----l~ 314 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYG-----LD 314 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTT-----CS
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcC-----CC
Confidence 1100 00 0011101124455555555544433332 4445555555555442 22222222211 44
Q ss_pred CcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEc
Q 037340 861 SLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHID 940 (1276)
Q Consensus 861 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~ 940 (1276)
+|+.|++++|. +....+ ..+..+++|+.|++++| .+.. ++ ...+..+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~-l~~~~~----~~~~~l~~L~~L~L~~N-~i~~-~~-----------------~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 315 NLQVLNLSYNL-LGELYS----SNFYGLPKVAYIDLQKN-HIAI-IQ-----------------DQTFKFLEKLQTLDLR 370 (844)
T ss_dssp SCCEEEEESCC-CSCCCS----CSCSSCTTCCEEECCSC-CCCC-CC-----------------SSCSCSCCCCCEEEEE
T ss_pred CCCEEECCCCC-CCccCH----HHhcCCCCCCEEECCCC-CCCc-cC-----------------hhhhcCCCCCCEEECC
Confidence 55555554442 111111 11334445555555442 2331 11 1234556667777777
Q ss_pred cCCcccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCc
Q 037340 941 GCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQL 1020 (1276)
Q Consensus 941 ~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l 1020 (1276)
+|.... +..+++|+.|++++|... .++....+++.|++.++.-... .....+..+++|+.|++++|. +
T Consensus 371 ~N~l~~---i~~~~~L~~L~l~~N~l~-----~l~~~~~~l~~L~ls~N~l~~l---~~~~~~~~l~~L~~L~Ls~N~-l 438 (844)
T 3j0a_A 371 DNALTT---IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENL---DILYFLLRVPHLQILILNQNR-F 438 (844)
T ss_dssp TCCSCC---CSSCCSCSEEEEESCCCC-----CCCCCCTTCCEEECCSCCCCSS---TTHHHHTTCTTCCEEEEESCC-C
T ss_pred CCCCCc---ccCCCCcchhccCCCCcc-----cccccccccceeecccCccccC---chhhhhhcCCccceeeCCCCc-c
Confidence 765332 223666777777776521 1222344555555554332211 112234467788888888763 2
Q ss_pred ccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCC
Q 037340 1021 LSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTK 1100 (1276)
Q Consensus 1021 ~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~ 1100 (1276)
+..+.. ..+.. .++|+.|+++++.-. ..+ .....+..+..+++
T Consensus 439 ~~~~~~----~~~~~-~~~L~~L~Ls~N~l~------------~~~--------------------~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 439 SSCSGD----QTPSE-NPSLEQLFLGENMLQ------------LAW--------------------ETELCWDVFEGLSH 481 (844)
T ss_dssp CCCCSS----SSSCS-CTTCCBCEEESCCCS------------SSC--------------------CSCCCSSCSSCBCC
T ss_pred cccccc----ccccc-CCccccccCCCCccc------------ccc--------------------ccccchhhhcCccc
Confidence 222100 00111 235555555553210 000 00122334556789
Q ss_pred eeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEecC
Q 037340 1101 LTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISG 1180 (1276)
Q Consensus 1101 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~ 1180 (1276)
|++|++++|...+..|..+.++++|++|++++|. ++.++...+.++|+.|++++|.+.+..+.. +++|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRNQLLAPNPDV----FVSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSCCCCCCCSCCCEEEEEEECCCCCCSCC----CSSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCC-CCccChhhhhccccEEECCCCcCCCCChhH----hCCcCEEEecC
Confidence 9999999997776677778999999999999998 888988888899999999999999887653 56899999998
Q ss_pred C
Q 037340 1181 G 1181 (1276)
Q Consensus 1181 ~ 1181 (1276)
|
T Consensus 557 N 557 (844)
T 3j0a_A 557 N 557 (844)
T ss_dssp E
T ss_pred C
Confidence 6
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.9e-30 Score=319.15 Aligned_cols=468 Identities=19% Similarity=0.148 Sum_probs=248.1
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCcccccc-hhhhccccccEEecCCccchhhhcc-ccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 674 (1276)
+.|++|+|++|.++.+ |..|+++++|++|+|++|.++.+| ..|+++++|++|++++| .+..+|. .++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5677777777777766 466777777777777777777664 56777777777777777 3444443 477777777777
Q ss_pred ccccccccc--CccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceE
Q 037340 675 NFNVLSLKE--MPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALL 752 (1276)
Q Consensus 675 l~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 752 (1276)
+++|. +.. +|..++++++|++|++..+.... ......+..+++|+.|+
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------------------------~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFS-----------------------------EIRRIDFAGLTSLNELE 154 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------------------------EECTTTTTTCCEEEEEE
T ss_pred CCCCc-ccccchhhhhhccCCccEEECCCCcccc-----------------------------ccCHhhhhcccccCeee
Confidence 77776 553 34556777777766554432000 00001122333444444
Q ss_pred EEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCC----CCCCCC
Q 037340 753 LEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTS----LPPVGQ 828 (1276)
Q Consensus 753 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~ 828 (1276)
+..+.. .......+..+++|+.|++.++....+|.++.. .+++|+.|++++|.+.+. .+....
T Consensus 155 L~~n~l------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 155 IKALSL------------RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp EEETTC------------CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred ccCCcc------------cccChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhh
Confidence 444332 111223344455566666665555555544321 355666666666654431 111233
Q ss_pred CCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCC
Q 037340 829 LLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPE 908 (1276)
Q Consensus 829 l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 908 (1276)
+++|+.|++++|. +....+.........+++|+.|++++|. +.+ ++.
T Consensus 222 ~~~L~~L~l~~n~-------------------------------l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~-~~~ 268 (549)
T 2z81_A 222 SSPMKKLAFRGSV-------------------------------LTDESFNELLKLLRYILELSEVEFDDCT-LNG-LGD 268 (549)
T ss_dssp CCCCCEEEEESCE-------------------------------EEHHHHHHHHGGGGGCTTCCEEEEESCE-EEC-CSC
T ss_pred hhcccceeccccc-------------------------------cchhHHHHHHHHhhhhcccccccccccc-ccc-ccc
Confidence 4445555554442 1110100000112345666666666643 221 100
Q ss_pred CCCCccEEEEecccCccccccCCCCccEEEEccCCcccccc-------cccCCCccEEEEccCCCcccchhhhccCCCCC
Q 037340 909 RFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSS-------LINFSSLKSIFLRDIANQVVLAGLFEQGLPKL 981 (1276)
Q Consensus 909 ~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~-------~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L 981 (1276)
++. .....+..+++|+.|++.++....... +...++|+.|++++|. +..++..+...+++|
T Consensus 269 -~~~----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 269 -FNP----------SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSL 336 (549)
T ss_dssp -CCC----------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTC
T ss_pred -ccc----------cchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccc
Confidence 000 000011223333333333332111000 1122345555555543 112222222233444
Q ss_pred ceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCC
Q 037340 982 ENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTC 1061 (1276)
Q Consensus 982 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~ 1061 (1276)
+.|++.++....... ..+..+..+++|+.|++++| .++.++.
T Consensus 337 ~~L~Ls~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------------------------------------ 378 (549)
T 2z81_A 337 EFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQN-HLRSMQK------------------------------------ 378 (549)
T ss_dssp CEEECCSSCCCHHHH-HHHTCTTSSTTCCEEECTTS-CCCCHHH------------------------------------
T ss_pred cEEEccCCccccccc-cchhhhhccccCcEEEccCC-ccccccc------------------------------------
Confidence 444444333221110 00122455666666666665 1211110
Q ss_pred CccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCC
Q 037340 1062 LTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPE 1141 (1276)
Q Consensus 1062 l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~ 1141 (1276)
.+..+..+++|++|++++| .+..+|..+..+++|++|++++|. ++.++.
T Consensus 379 -----------------------------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~ 427 (549)
T 2z81_A 379 -----------------------------TGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKT 427 (549)
T ss_dssp -----------------------------HHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCT
T ss_pred -----------------------------chhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccc
Confidence 0000123468888888888 455788888888899999999888 776764
Q ss_pred CCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCc
Q 037340 1142 DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKF 1221 (1276)
Q Consensus 1142 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~ 1221 (1276)
. .+++|+.|++++|.+.+.. ..+++|++|++++|..........+++|+.|++++|...+..|..+..+++|++
T Consensus 428 ~-~~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 428 C-IPQTLEVLDVSNNNLDSFS-----LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp T-SCTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred h-hcCCceEEECCCCChhhhc-----ccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 3 4578999999999887642 467888888888874432211225778888999886544444445688889999
Q ss_pred eeccCCCC
Q 037340 1222 LDLDNCPK 1229 (1276)
Q Consensus 1222 L~l~~c~~ 1229 (1276)
|++++||-
T Consensus 502 L~l~~N~~ 509 (549)
T 2z81_A 502 IWLHTNPW 509 (549)
T ss_dssp EECCSSCB
T ss_pred EEecCCCc
Confidence 99998873
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=9.7e-30 Score=312.91 Aligned_cols=467 Identities=18% Similarity=0.211 Sum_probs=285.9
Q ss_pred EEEEecCccccccCcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccceeeccccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
.+.|.+++.++.+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 356888999999998775 7999999999999977 5779999999999999994444444679999999999999998
Q ss_pred ccccCccc-cCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCC
Q 037340 680 SLKEMPKG-FGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSAR 758 (1276)
Q Consensus 680 ~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 758 (1276)
+..+|.. ++++++|++|++..+... . +
T Consensus 86 -l~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~--------------------------------------- 113 (549)
T 2z81_A 86 -LSSLSSSWFGPLSSLKYLNLMGNPYQ------T------L--------------------------------------- 113 (549)
T ss_dssp -CCSCCHHHHTTCTTCCEEECTTCCCS------S------S---------------------------------------
T ss_pred -cCccCHHHhccCCCCcEEECCCCccc------c------c---------------------------------------
Confidence 7777665 777777777754322100 0 0
Q ss_pred CccccCCCchhhHHhhhccCCCCCCccEEEEeccC-CCCCCc-cCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCccee
Q 037340 759 PRRVCNLNQSEFQTCVLSILKPNQALQELTILGYG-GTKFPV-WLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHL 835 (1276)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L 835 (1276)
.....+..+++|+.|+++++. ...+|. .+. .+++|+.|++++|.+....|. ++.+++|+.|
T Consensus 114 --------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 114 --------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp --------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred --------------chhhhhhccCCccEEECCCCccccccCHhhhh--cccccCeeeccCCcccccChhhhhccccCceE
Confidence 001123334455555555554 333332 232 466666777766665554443 5666666666
Q ss_pred eecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCC------CCCC
Q 037340 836 EISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGT------LPER 909 (1276)
Q Consensus 836 ~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~------~p~~ 909 (1276)
++++|.. ..++..+ ...+++|++|++++| .+.+. +...
T Consensus 178 ~l~~n~~-~~~~~~~----------------------------------~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 178 TLHLSES-AFLLEIF----------------------------------ADILSSVRYLELRDT-NLARFQFSPLPVDEV 221 (549)
T ss_dssp EEECSBS-TTHHHHH----------------------------------HHSTTTBSEEEEESC-BCTTCCCCCCSSCCC
T ss_pred ecccCcc-cccchhh----------------------------------HhhcccccEEEccCC-ccccccccccchhhh
Confidence 6665521 1111111 123555666666653 23321 1122
Q ss_pred CCCccEEEEecccC-------ccccccCCCCccEEEEccCCccc--------ccccccCCCccEEEEccCCCcccchhhh
Q 037340 910 FPLLKKLVIVGCEQ-------LLVTIQCLPVLSELHIDGCRRVV--------FSSLINFSSLKSIFLRDIANQVVLAGLF 974 (1276)
Q Consensus 910 l~~L~~L~i~~~~~-------l~~~~~~l~~L~~L~L~~~~~~~--------~~~~~~l~~L~~L~L~~n~~l~~~~~~~ 974 (1276)
+++|+.|.+.++.. +...+..+++|+.+++++|.... ...+..+++|+.|++.++.
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------- 292 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH--------- 292 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB---------
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc---------
Confidence 34444444444321 11122344555555555554211 1122334444444444443
Q ss_pred ccCCCCCceEEEecCCCCcccc-ccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccc
Q 037340 975 EQGLPKLENLQICYVHEQTYLW-QSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIR 1053 (1276)
Q Consensus 975 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~ 1053 (1276)
...... ...+..+...++|+.|++++|. +..+|... +..++ +|+.|++++|...
T Consensus 293 ----------------i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~-----~~~l~-~L~~L~Ls~N~l~-- 347 (549)
T 2z81_A 293 ----------------IPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF-----SQHLK-SLEFLDLSENLMV-- 347 (549)
T ss_dssp ----------------CSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH-----HHHCT-TCCEEECCSSCCC--
T ss_pred ----------------cchhhhcccchhhhhhcccceEEEeccCc-cccCCHHH-----HhcCc-cccEEEccCCccc--
Confidence 111100 0001112234567777777663 44443110 01122 5666665554211
Q ss_pred cccCCCCCCccCCCCCcccccccceEEEecCCCCCccc---CCCCCCCCCeeEEEEeecCCCCccc---ccCCCCCccce
Q 037340 1054 GSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESF---PEEGLPSTKLTELMIWSCENLKALP---NSMHNLTSLLH 1127 (1276)
Q Consensus 1054 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~---p~~~~~~~~L~~L~l~~~~~l~~lp---~~l~~l~~L~~ 1127 (1276)
..+ +..+..+++|++|++++|... .+| ..+..+++|++
T Consensus 348 -----------------------------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~ 391 (549)
T 2z81_A 348 -----------------------------------EEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTS 391 (549)
T ss_dssp -----------------------------------HHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCE
T ss_pred -----------------------------------cccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCE
Confidence 011 112345679999999999544 443 45789999999
Q ss_pred eeeccCCCCcccCCC-CCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCC
Q 037340 1128 LEIGRCPSLVSFPED-GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSL 1206 (1276)
Q Consensus 1128 L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l 1206 (1276)
|++++|. ++.+|.. +.+++|++|++++|.+...... -.++|++|++++|... ..+..+++|++|++++| .+
T Consensus 392 L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~Ls~N~l~--~~~~~l~~L~~L~Ls~N-~l 463 (549)
T 2z81_A 392 LDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTC----IPQTLEVLDVSNNNLD--SFSLFLPRLQELYISRN-KL 463 (549)
T ss_dssp EECTTCC-CCCCCSCCCCCTTCCEEECTTSCCSCCCTT----SCTTCSEEECCSSCCS--CCCCCCTTCCEEECCSS-CC
T ss_pred EECCCCC-CccCChhhcccccccEEECCCCCcccccch----hcCCceEEECCCCChh--hhcccCChhcEEECCCC-cc
Confidence 9999997 7788864 5678999999999998754322 1368999999997433 34457889999999996 56
Q ss_pred ccccCCCCCCCCcCceeccCCCCCcccCCCCC--ccccccccccCChhH
Q 037340 1207 ERLSSIGENLTSLKFLDLDNCPKLKYFSKQGL--PKSLLRLIIDECPLI 1253 (1276)
Q Consensus 1207 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~cp~l 1253 (1276)
+.+|. ...+++|++|++++| .++.++...+ .++|+.|++++||..
T Consensus 464 ~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 464 KTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 78985 567999999999999 5777766533 468999999988753
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=311.61 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=85.7
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCC----CCCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPE----DGFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
+++|++|++++|...+.+|..+..+++|++|++++|. +..++. .+.+++|+.|++++|.+.+..+...+..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 3456666666665555555555666666666666665 333221 23455666666666666554443335555666
Q ss_pred ceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCC--ccccccccccCCh
Q 037340 1174 RKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGL--PKSLLRLIIDECP 1251 (1276)
Q Consensus 1174 ~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l--~~~L~~L~i~~cp 1251 (1276)
+.|++++|...-......+++|+.|++++| .++.+|..+..+++|++|++++| .++.+|...+ .++|+.|++++||
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 666666653322211122356677777664 45566665666777777777776 4666665422 3467777777666
Q ss_pred hH
Q 037340 1252 LI 1253 (1276)
Q Consensus 1252 ~l 1253 (1276)
.-
T Consensus 480 ~~ 481 (520)
T 2z7x_B 480 WD 481 (520)
T ss_dssp BC
T ss_pred Cc
Confidence 43
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.6e-30 Score=316.94 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccc-hhhhccccc
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNL 646 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L 646 (1276)
+.++.|.+.++... .-....|..+++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+| ..|+++++|
T Consensus 28 ~~l~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCC-----EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCccC-----ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 35666666655321 111123666777777777777766663 45667777777777777766654 456777777
Q ss_pred cEEecCCccchhhhcc-ccCCccccceeeccccccccc--CccccCCccccccCCc
Q 037340 647 YTILLEDCYWLKKLCQ-DMGNLTKLHHLINFNVLSLKE--MPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 647 ~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~i~~L~~L~~L~~ 699 (1276)
++|++++| .+..+|. .++++++|++|++++|. +.. +|..++++++|++|++
T Consensus 103 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp CEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEEC
T ss_pred cccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeC
Confidence 77777776 4555543 46677777777777665 443 4666666666666643
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-29 Score=317.17 Aligned_cols=375 Identities=17% Similarity=0.146 Sum_probs=222.7
Q ss_pred CcccccchhhhccccccEEecCCccchhh------------------hccccC--CccccceeecccccccccCccccCC
Q 037340 631 TSIQFLPDSINSLYNLYTILLEDCYWLKK------------------LCQDMG--NLTKLHHLINFNVLSLKEMPKGFGK 690 (1276)
Q Consensus 631 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~~ 690 (1276)
|.++.+|..+++|++|++|+|++|. +.. +|..++ ++++|++|++++|.....+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 5566677778888888888888874 443 777777 7888888888877656667777777
Q ss_pred ccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhh
Q 037340 691 LTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEF 770 (1276)
Q Consensus 691 L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 770 (1276)
+++|+.|++..+.. +.. ...+..
T Consensus 514 L~~L~~L~Ls~N~~-----lsg-----------------------~~iP~~----------------------------- 536 (876)
T 4ecn_A 514 LPELQSLNIACNRG-----ISA-----------------------AQLKAD----------------------------- 536 (876)
T ss_dssp CSSCCEEECTTCTT-----SCH-----------------------HHHHHH-----------------------------
T ss_pred CCCCCEEECcCCCC-----ccc-----------------------ccchHH-----------------------------
Confidence 77777775432210 000 000000
Q ss_pred HHhhh-ccCCCCCCccEEEEeccCCCCCCc--cCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeC
Q 037340 771 QTCVL-SILKPNQALQELTILGYGGTKFPV--WLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVG 847 (1276)
Q Consensus 771 ~~~~~-~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~ 847 (1276)
...+ ..+..+++|+.|+++++....+|. .+. .+++|+.|++++|.+. .+|.++.+++|+.|+|++|.. ..++
T Consensus 537 -i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp 611 (876)
T 4ecn_A 537 -WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIP 611 (876)
T ss_dssp -HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCC
T ss_pred -HHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccch
Confidence 0011 134456788888888888888887 665 5888999999988876 777888889999999988853 3555
Q ss_pred CcccCCCCCCCCCC-cceeeccccccccccccCCccccccCC--CCccEEEEecCCCCcCCCCCCCCCccEEEEecccCc
Q 037340 848 PEFYGDSCSVPFPS-LETLRFHDMQEWEEWIPRGAGQAVEGF--PKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQL 924 (1276)
Q Consensus 848 ~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l 924 (1276)
..+. .+++ |+.|++++|. +..++. .+..+ ++|+.|++++| .+.+.+|.....+
T Consensus 612 ~~l~------~l~~~L~~L~Ls~N~-L~~lp~-----~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l----------- 667 (876)
T 4ecn_A 612 EDFC------AFTDQVEGLGFSHNK-LKYIPN-----IFNAKSVYVMGSVDFSYN-KIGSEGRNISCSM----------- 667 (876)
T ss_dssp TTSC------EECTTCCEEECCSSC-CCSCCS-----CCCTTCSSCEEEEECCSS-CTTTTSSSCSSCT-----------
T ss_pred HHHh------hccccCCEEECcCCC-CCcCch-----hhhccccCCCCEEECcCC-cCCCccccchhhh-----------
Confidence 4432 2667 8888888774 333221 13333 44888888884 4554444211000
Q ss_pred cccccCCCCccEEEEccCCccccc--ccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCcccccccccc
Q 037340 925 LVTIQCLPVLSELHIDGCRRVVFS--SLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRL 1002 (1276)
Q Consensus 925 ~~~~~~l~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 1002 (1276)
..-.+++|+.|++++|.....+ .+..+++|+.|++++|... .++....... ...
T Consensus 668 --~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~---------------------~~~ 723 (876)
T 4ecn_A 668 --DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK---------------------DGN 723 (876)
T ss_dssp --TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT---------------------TSC
T ss_pred --ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc---------------------ccc
Confidence 0112346777777777633322 2346777788887777521 1221111100 001
Q ss_pred CCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEe
Q 037340 1003 LHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRV 1082 (1276)
Q Consensus 1003 ~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 1082 (1276)
..++++|+.|++++| .++.+|.... ...+| +|+.|++++|
T Consensus 724 l~nl~~L~~L~Ls~N-~L~~lp~~l~----~~~l~-~L~~L~Ls~N---------------------------------- 763 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLTSLSDDFR----ATTLP-YLSNMDVSYN---------------------------------- 763 (876)
T ss_dssp CTTGGGCCEEECCSS-CCCCCCGGGS----TTTCT-TCCEEECCSS----------------------------------
T ss_pred ccccCCccEEECCCC-CCccchHHhh----hccCC-CcCEEEeCCC----------------------------------
Confidence 223346666666665 3333331000 00111 3333333332
Q ss_pred cCCCCCcccCCCCCCCCCeeEEEEee------cCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecC
Q 037340 1083 DGWPNLESFPEEGLPSTKLTELMIWS------CENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDL 1156 (1276)
Q Consensus 1083 ~~~~~l~~~p~~~~~~~~L~~L~l~~------~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n 1156 (1276)
.+..+|..+..+++|+.|+|++ |...+.+|..+.++++|++|+|++|. ++.+|.. +.++|+.|+|++|
T Consensus 764 ----~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N 837 (876)
T 4ecn_A 764 ----CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADN 837 (876)
T ss_dssp ----CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSC
T ss_pred ----CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCC
Confidence 1222444455567788888866 55566778888888888888888888 5777765 4468888888888
Q ss_pred CCCccc
Q 037340 1157 KISKPL 1162 (1276)
Q Consensus 1157 ~~~~~~ 1162 (1276)
++....
T Consensus 838 ~l~~i~ 843 (876)
T 4ecn_A 838 PNISID 843 (876)
T ss_dssp TTCEEE
T ss_pred CCCccC
Confidence 876544
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=6e-30 Score=317.19 Aligned_cols=250 Identities=18% Similarity=0.188 Sum_probs=157.1
Q ss_pred CCcccccchhhhccccccEEecCCccchhh------------------hccccC--CccccceeecccccccccCccccC
Q 037340 630 GTSIQFLPDSINSLYNLYTILLEDCYWLKK------------------LCQDMG--NLTKLHHLINFNVLSLKEMPKGFG 689 (1276)
Q Consensus 630 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~i~ 689 (1276)
+|.++.+|..++++++|++|++++|. +.. +|..++ ++++|++|++++|.....+|..++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 34566677778888888888888774 444 777777 788888888877765566777777
Q ss_pred CccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchh
Q 037340 690 KLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSE 769 (1276)
Q Consensus 690 ~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 769 (1276)
++++|++|++..+.. +.. ...+..+
T Consensus 271 ~l~~L~~L~Ls~n~~-----l~~-----------------------~~lp~~~--------------------------- 295 (636)
T 4eco_A 271 ALPEMQLINVACNRG-----ISG-----------------------EQLKDDW--------------------------- 295 (636)
T ss_dssp TCSSCCEEECTTCTT-----SCH-----------------------HHHHHHH---------------------------
T ss_pred cCCCCCEEECcCCCC-----Ccc-----------------------ccchHHH---------------------------
Confidence 777777775432210 000 0000000
Q ss_pred hHHhhhccCCCCCCccEEEEeccCCCCCCc--cCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeC
Q 037340 770 FQTCVLSILKPNQALQELTILGYGGTKFPV--WLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVG 847 (1276)
Q Consensus 770 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~ 847 (1276)
..+..+..+++|+.|+++++....+|. ++. .+++|+.|++++|.+.+.+|.++.+++|+.|++++|. +..++
T Consensus 296 ---~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp 369 (636)
T 4eco_A 296 ---QALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIP 369 (636)
T ss_dssp ---HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECC
T ss_pred ---HhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-ccccc
Confidence 001112234678888888888778887 665 5888999999998877677788888899999998874 44555
Q ss_pred CcccCCCCCCCCCC-cceeeccccccccccccCCcccccc--CCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCc
Q 037340 848 PEFYGDSCSVPFPS-LETLRFHDMQEWEEWIPRGAGQAVE--GFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQL 924 (1276)
Q Consensus 848 ~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l 924 (1276)
..+.. +++ |+.|+++++. +..+... +. .+++|+.|++++| .+.+.+|..++..
T Consensus 370 ~~l~~------l~~~L~~L~Ls~N~-l~~lp~~-----~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~----------- 425 (636)
T 4eco_A 370 ANFCG------FTEQVENLSFAHNK-LKYIPNI-----FDAKSVSVMSAIDFSYN-EIGSVDGKNFDPL----------- 425 (636)
T ss_dssp TTSEE------ECTTCCEEECCSSC-CSSCCSC-----CCTTCSSCEEEEECCSS-CTTTTTTCSSCTT-----------
T ss_pred Hhhhh------hcccCcEEEccCCc-Ccccchh-----hhhcccCccCEEECcCC-cCCCcchhhhccc-----------
Confidence 54322 677 8888888874 3332211 22 2447888888884 4665666544310
Q ss_pred cccccCCCCccEEEEccCCccccc--ccccCCCccEEEEccCC
Q 037340 925 LVTIQCLPVLSELHIDGCRRVVFS--SLINFSSLKSIFLRDIA 965 (1276)
Q Consensus 925 ~~~~~~l~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~n~ 965 (1276)
....-.+++|+.|++++|.....+ .+..+++|++|++++|.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 001113456777777777633322 24457777778777776
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=310.78 Aligned_cols=113 Identities=21% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCC-cccCCC-CCCCCCceeEeecCCCCccccccccCCCCCcc
Q 037340 1097 PSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSL-VSFPED-GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLR 1174 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l-~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 1174 (1276)
.+++|++|++++|...+..|..+.++++|++|++++|... ..+|.. ..+++|++|++++|.+.+..+.. +..+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l---- 493 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSL---- 493 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-TTTC----
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh-hhcc----
Confidence 3455666666666555555555556666666666666522 133322 33455555555555555443332 3344
Q ss_pred eEEecCCCCCCccCCCCCCCcCeeeccCCCCCcccc-CCCCCCCCcCceeccCCCCCccc
Q 037340 1175 KLKISGGFPDLVSSPRFPASLTELKISDMPSLERLS-SIGENLTSLKFLDLDNCPKLKYF 1233 (1276)
Q Consensus 1175 ~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l 1233 (1276)
++|++|++++|. ++.+| ..+.++++|++|++++|+--...
T Consensus 494 ------------------~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 494 ------------------SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp ------------------TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ------------------cCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 445555555543 44443 34577888888888888643333
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.2e-29 Score=302.53 Aligned_cols=270 Identities=18% Similarity=0.105 Sum_probs=142.3
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 55666666666666554 4566666666666666666655 455666666666666666 44556554 5666666666
Q ss_pred cccccccc--CccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 676 FNVLSLKE--MPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 676 ~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
++|. +.. +|..++++++|++|++..+
T Consensus 98 ~~N~-l~~~~~p~~~~~l~~L~~L~L~~n--------------------------------------------------- 125 (520)
T 2z7x_B 98 SFNA-FDALPICKEFGNMSQLKFLGLSTT--------------------------------------------------- 125 (520)
T ss_dssp CSSC-CSSCCCCGGGGGCTTCCEEEEEES---------------------------------------------------
T ss_pred cCCc-cccccchhhhccCCcceEEEecCc---------------------------------------------------
Confidence 6665 443 3455556655555544332
Q ss_pred EecCCCccccCCCchhhHHhhhccCCCCCCc--cEEEEeccCC---CCCCccCCCCCCC-ceeEEEEccCCCCCCCCC--
Q 037340 754 EWSARPRRVCNLNQSEFQTCVLSILKPNQAL--QELTILGYGG---TKFPVWLGDPSFS-KLVLLRVLSCGMCTSLPP-- 825 (1276)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~~-- 825 (1276)
... . ..+..+++| +.|++.++.. ...|.++. .+. +...+++++|...+.++.
T Consensus 126 ---~l~------------~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 126 ---HLE------------K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp ---SCC------------G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCC
T ss_pred ---ccc------------h---hhccccccceeeEEEeeccccccccccccccc--ccccceEEEEeccCcchhhhhhhh
Confidence 110 0 001112223 5666665543 23344443 122 334566667766655554
Q ss_pred CCCCCCcceeeecCCCC-------ceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEec
Q 037340 826 VGQLLFLKHLEISGMDG-------VKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVG 898 (1276)
Q Consensus 826 l~~l~~L~~L~L~~~~~-------~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 898 (1276)
+..+++|+.|++++|.. ...+ +. ...+++|+.|++.++.--...... ... ....++|++|++++
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~------l~~l~~L~~L~l~~~~l~~~~~~~-~~~-~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSIL-AK------LQTNPKLSNLTLNNIETTWNSFIR-ILQ-LVWHTTVWYFSISN 256 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHH-HG------GGGCTTCCEEEEEEEEEEHHHHHH-HHH-HHHTSSCSEEEEEE
T ss_pred hhcccceeeccccccccccccceeecch-hh------hccccchhhccccccccCHHHHHH-HHH-HhhhCcccEEEeec
Confidence 66788888888887641 1111 11 123677888877765311110000 000 11245788888888
Q ss_pred CCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcccc-cccccC---CCccEEEEccCC
Q 037340 899 CSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVF-SSLINF---SSLKSIFLRDIA 965 (1276)
Q Consensus 899 c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~~~~l---~~L~~L~L~~n~ 965 (1276)
| ++.+.+|..+-. .....+++|+.+++++|....+ ..+..+ ++|+.|++++|.
T Consensus 257 n-~l~~~~p~~~~~-------------~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 257 V-KLQGQLDFRDFD-------------YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp E-EEESCCCCCCCC-------------CCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred c-cccCccccchhh-------------cccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 5 356566654310 0014455666667766654111 122222 567788887775
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.2e-28 Score=306.15 Aligned_cols=103 Identities=28% Similarity=0.403 Sum_probs=51.4
Q ss_pred cCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhcc-ccCCcccc
Q 037340 594 LLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKL 670 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L 670 (1276)
|.++++|++|+|++|.|+.+| .+|.+|++|++|+|++|+|+.+|. .|.+|++|++|++++| .+..+|. .|++|++|
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCccc
Confidence 555555555555555555553 345555555555555555555543 2455555555555555 3333432 24555555
Q ss_pred ceeeccccccccc--CccccCCccccccCC
Q 037340 671 HHLINFNVLSLKE--MPKGFGKLTCLLTLR 698 (1276)
Q Consensus 671 ~~L~l~~~~~l~~--lp~~i~~L~~L~~L~ 698 (1276)
++|++++|. +.. +|..++.+++|++|+
T Consensus 151 ~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 151 KELNVAHNL-IQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp CEEECCSSC-CCCCCCCGGGGGCTTCCEEE
T ss_pred CeeccccCc-cccCCCchhhccchhhhhhc
Confidence 555555554 332 233444455555443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=4.4e-28 Score=297.81 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=51.7
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccc-hhhhccccccEEecCCccchhhh-ccccCCccccceeecccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLINFNV 678 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 678 (1276)
++++++++.++.+|..+. ++|++|+|++|.|..+| ..|.++++|++|++++| .+..+ |..|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 566666666666665443 56666666666666554 35666666666666666 33333 445566666666666666
Q ss_pred cccccCccccCCccccccCC
Q 037340 679 LSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 679 ~~l~~lp~~i~~L~~L~~L~ 698 (1276)
. +..+|.. .+++|++|+
T Consensus 111 ~-l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 111 R-LQNISCC--PMASLRHLD 127 (562)
T ss_dssp C-CCEECSC--CCTTCSEEE
T ss_pred c-CCccCcc--ccccCCEEE
Confidence 5 5555544 444444443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-27 Score=294.07 Aligned_cols=100 Identities=29% Similarity=0.268 Sum_probs=85.8
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
++|++|+|++|.++.+| ..|+++++|++|+|++|.|+.+ |..|+++++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 78999999999999886 6899999999999999999987 677999999999999999 67788877 8999999999
Q ss_pred ccccccccCc--cccCCccccccCCceE
Q 037340 676 FNVLSLKEMP--KGFGKLTCLLTLRRFV 701 (1276)
Q Consensus 676 ~~~~~l~~lp--~~i~~L~~L~~L~~~~ 701 (1276)
++|. +..+| ..++++++|++|++..
T Consensus 129 s~N~-l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 129 SFND-FDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp CSSC-CSBCCCCGGGGGCTTCCEEEEEC
T ss_pred CCCC-ccccCchHhhcccCcccEEecCC
Confidence 9998 77654 5788888888886543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.3e-27 Score=282.20 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=32.8
Q ss_pred CCceEEEEecCccccccCcccccccccceeeccCCccc-ccchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 597 LPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQ-FLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
.++|++|++++|.+..+|.+|++|++|++|++++|.+. .+|.+++++.+|+++++.+|.. .+|++|++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 45666777777766666766777777777777776665 5666666666666666666521 45666666
Q ss_pred ccccccccCc
Q 037340 676 FNVLSLKEMP 685 (1276)
Q Consensus 676 ~~~~~l~~lp 685 (1276)
++|. +..+|
T Consensus 79 ~~~~-l~~lp 87 (454)
T 1jl5_A 79 NNLG-LSSLP 87 (454)
T ss_dssp TTSC-CSCCC
T ss_pred cCCc-cccCC
Confidence 6665 44443
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.3e-28 Score=299.71 Aligned_cols=372 Identities=13% Similarity=0.150 Sum_probs=193.3
Q ss_pred cCCCCCCccEEEEeccCCCC------------------CCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeee
Q 037340 777 ILKPNQALQELTILGYGGTK------------------FPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEI 837 (1276)
Q Consensus 777 ~l~~~~~L~~L~l~~~~~~~------------------~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L 837 (1276)
.+..+++|+.|+++++.... +|..+....+++|+.|++++|.+.+.+|. ++++++|+.|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 34445666677777666665 67666422477888888888887777775 788888888888
Q ss_pred cCCCCce--eeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccE
Q 037340 838 SGMDGVK--SVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKK 915 (1276)
Q Consensus 838 ~~~~~~~--~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~ 915 (1276)
++|..+. .++..+..-.....+++|+.|+++++. +..++.. ..++.+++|+.|++++| .+.|.+| .+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~---~~l~~l~~L~~L~L~~N-~l~g~ip-~~----- 349 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVE---TSLQKMKKLGMLECLYN-QLEGKLP-AF----- 349 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCH---HHHTTCTTCCEEECCSC-CCEEECC-CC-----
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCch---hhhccCCCCCEEeCcCC-cCccchh-hh-----
Confidence 8875333 243332110000113678888887763 3222220 02567778888888774 4554555 32
Q ss_pred EEEecccCccccccCCCCccEEEEccCCcc-cccccccCCC-ccEEEEccCCCcccchhhhc-cCCCCCceEEEecCCCC
Q 037340 916 LVIVGCEQLLVTIQCLPVLSELHIDGCRRV-VFSSLINFSS-LKSIFLRDIANQVVLAGLFE-QGLPKLENLQICYVHEQ 992 (1276)
Q Consensus 916 L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~-~~~~~~~l~~-L~~L~L~~n~~l~~~~~~~~-~~l~~L~~L~l~~~~~~ 992 (1276)
..+++|+.|++++|... .+..+.++++ |++|++++|... .++..+. ..+++|+.|++.++...
T Consensus 350 -------------~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 350 -------------GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp -------------EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred -------------CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 22345556666665522 2334555666 666666666522 2222110 01123444444433322
Q ss_pred ccccccccccCC-------CCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccC
Q 037340 993 TYLWQSETRLLH-------DISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSF 1065 (1276)
Q Consensus 993 ~~~~~~~~~~~~-------~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l 1065 (1276)
.. .+..+. .+++|+.|++++| .++.++.. .
T Consensus 416 ~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-----~--------------------------------- 452 (636)
T 4eco_A 416 SV----DGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE-----L--------------------------------- 452 (636)
T ss_dssp TT----TTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH-----H---------------------------------
T ss_pred Cc----chhhhcccccccccCCCCCEEECcCC-ccCcCCHH-----H---------------------------------
Confidence 21 133333 5667888888776 22222200 0
Q ss_pred CCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCC--------CCCccceeeeccCCCCc
Q 037340 1066 SSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMH--------NLTSLLHLEIGRCPSLV 1137 (1276)
Q Consensus 1066 ~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~--------~l~~L~~L~l~~c~~l~ 1137 (1276)
+..+++|++|++++|... .+|..+. ++++|++|++++|. ++
T Consensus 453 -----------------------------~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~ 501 (636)
T 4eco_A 453 -----------------------------FSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK-LT 501 (636)
T ss_dssp -----------------------------HHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC-CC
T ss_pred -----------------------------HccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc-CC
Confidence 001234444444444322 3332221 12255555555555 44
Q ss_pred ccCCC-C--CCCCCceeEeecCCCCccccccccCCCCCcceEEecCCC-------C-CCccCCCCCCCcCeeeccCCCCC
Q 037340 1138 SFPED-G--FPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGF-------P-DLVSSPRFPASLTELKISDMPSL 1206 (1276)
Q Consensus 1138 ~l~~~-~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~-------~-~~~~~~~~~~~L~~L~l~~~~~l 1206 (1276)
.+|.. . .+++|+.|++++|.+.+ +|.. +.++++|+.|+|++|. . .+......+++|++|++++|..
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 44432 1 34555555555555554 3322 4455666666664321 0 0111111356677777777554
Q ss_pred ccccCCCCCCCCcCceeccCCCCCcccCCCCC-c---------cccccccccCChhH
Q 037340 1207 ERLSSIGENLTSLKFLDLDNCPKLKYFSKQGL-P---------KSLLRLIIDECPLI 1253 (1276)
Q Consensus 1207 ~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l-~---------~~L~~L~i~~cp~l 1253 (1276)
+.+|..+. ++|++|++++|+ +.+++.... | ...+..++.+||.|
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CccCHhHh--CcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 77776654 688888888886 444443222 1 12345677888876
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.1e-27 Score=278.00 Aligned_cols=420 Identities=20% Similarity=0.208 Sum_probs=205.0
Q ss_pred CcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccc
Q 037340 614 PNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTC 693 (1276)
Q Consensus 614 p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~ 693 (1276)
|+.+ +..+|++|++++|.+..+|++|++|++|++|++++|.....+|..++++++|+.+++.+|. .. +++
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-~~-------~l~- 74 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-DR-------QAH- 74 (454)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-HH-------TCS-
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-cc-------CCC-
Confidence 4444 3578888888888888888888888888888888886566788888888888888887775 21 111
Q ss_pred cccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHh
Q 037340 694 LLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTC 773 (1276)
Q Consensus 694 L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 773 (1276)
+|++..+ .+..++. -.++|+.|+++++... .
T Consensus 75 --~L~l~~~------~l~~lp~----------------------------~~~~L~~L~l~~n~l~-------------~ 105 (454)
T 1jl5_A 75 --ELELNNL------GLSSLPE----------------------------LPPHLESLVASCNSLT-------------E 105 (454)
T ss_dssp --EEECTTS------CCSCCCS----------------------------CCTTCSEEECCSSCCS-------------S
T ss_pred --EEEecCC------ccccCCC----------------------------CcCCCCEEEccCCcCC-------------c
Confidence 1211110 0000000 0135666666554431 0
Q ss_pred hhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeCCcccCC
Q 037340 774 VLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVGPEFYGD 853 (1276)
Q Consensus 774 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~ 853 (1276)
... .+++|+.|+++++....+|.. .++|+.|++++|.+.+ +|.++.+++|++|++++|. +..++..
T Consensus 106 lp~---~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~~---- 171 (454)
T 1jl5_A 106 LPE---LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPDL---- 171 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCCC----
T ss_pred ccc---ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCCC----
Confidence 001 136778888888777766643 2578888888887664 6778888888888888874 3333321
Q ss_pred CCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCC
Q 037340 854 SCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPV 933 (1276)
Q Consensus 854 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~ 933 (1276)
+++|+.|+++++. +..+ + .++.+++|+.|++++| .++ .+|...+ +
T Consensus 172 -----~~~L~~L~L~~n~-l~~l-~-----~~~~l~~L~~L~l~~N-~l~-~l~~~~~---------------------~ 216 (454)
T 1jl5_A 172 -----PPSLEFIAAGNNQ-LEEL-P-----ELQNLPFLTAIYADNN-SLK-KLPDLPL---------------------S 216 (454)
T ss_dssp -----CTTCCEEECCSSC-CSSC-C-----CCTTCTTCCEEECCSS-CCS-SCCCCCT---------------------T
T ss_pred -----cccccEEECcCCc-CCcC-c-----cccCCCCCCEEECCCC-cCC-cCCCCcC---------------------c
Confidence 4588888888873 3332 1 1667888888888884 466 3554433 4
Q ss_pred ccEEEEccCCcccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEE
Q 037340 934 LSELHIDGCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQ 1013 (1276)
Q Consensus 934 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 1013 (1276)
|++|++++|.....+.+..+++|++|++++|.. .+ ++..+++|+.|++.++.-... +. .+++|+.|+
T Consensus 217 L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l----~~-l~~~~~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~ 283 (454)
T 1jl5_A 217 LESIVAGNNILEELPELQNLPFLTTIYADNNLL----KT-LPDLPPSLEALNVRDNYLTDL-----PE---LPQSLTFLD 283 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC----SS-CCSCCTTCCEEECCSSCCSCC-----CC---CCTTCCEEE
T ss_pred ccEEECcCCcCCcccccCCCCCCCEEECCCCcC----Cc-ccccccccCEEECCCCccccc-----Cc---ccCcCCEEE
Confidence 455555555433333455566666666666541 11 122334555555554432211 11 236677777
Q ss_pred EecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCC
Q 037340 1014 ISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPE 1093 (1276)
Q Consensus 1014 ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~ 1093 (1276)
+++|. ++.++ .+|++|+.|++++|. +..++.
T Consensus 284 ls~N~-l~~l~----------~~~~~L~~L~l~~N~--------------------------------------l~~i~~ 314 (454)
T 1jl5_A 284 VSENI-FSGLS----------ELPPNLYYLNASSNE--------------------------------------IRSLCD 314 (454)
T ss_dssp CCSSC-CSEES----------CCCTTCCEEECCSSC--------------------------------------CSEECC
T ss_pred CcCCc-cCccc----------CcCCcCCEEECcCCc--------------------------------------CCcccC
Confidence 77762 33222 334466666665532 111221
Q ss_pred CCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCc--cccccccCCCC
Q 037340 1094 EGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISK--PLFQWGLNRFN 1171 (1276)
Q Consensus 1094 ~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~--~~~~~~l~~l~ 1171 (1276)
. .++|++|++++|... .+|.. +++|++|++++|. ++.+|. .+++|++|++++|.+.+ ..|.+
T Consensus 315 ~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~------ 378 (454)
T 1jl5_A 315 L---PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNPLREFPDIPES------ 378 (454)
T ss_dssp C---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSSCCCCCTT------
T ss_pred C---cCcCCEEECCCCccc-ccccc---CCcCCEEECCCCc-cccccc--hhhhccEEECCCCCCCcCCCChHH------
Confidence 0 147888999888544 46654 5789999999887 777877 67889999999998887 44332
Q ss_pred CcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCc--cccCCCCCCCCcCceeccCCCC
Q 037340 1172 SLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLE--RLSSIGENLTSLKFLDLDNCPK 1229 (1276)
Q Consensus 1172 ~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~ 1229 (1276)
+..|.... .....+..+++|+.|++++|+..+ .+| .+|+.|.+.+|..
T Consensus 379 -l~~L~~n~---~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 379 -VEDLRMNS---HLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERV 428 (454)
T ss_dssp -CCEEECCC---------------------------------------------------
T ss_pred -HHhhhhcc---cccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCccc
Confidence 22232211 112233346789999999976544 455 3567778888753
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.9e-28 Score=300.48 Aligned_cols=37 Identities=27% Similarity=0.555 Sum_probs=32.8
Q ss_pred CceEEEEecCcccc-ccCcccccccccceeec-cCCccc
Q 037340 598 PRLRVFSLRGYCIS-KLPNEIGNLKHLRFLNL-SGTSIQ 634 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L-~~~~i~ 634 (1276)
.++..|+|+++.+. .+|.+|++|++|++|+| ++|.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~ls 361 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeeccccccc
Confidence 57999999999998 78999999999999999 777654
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.9e-27 Score=292.51 Aligned_cols=497 Identities=17% Similarity=0.097 Sum_probs=266.7
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhcc-ccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 674 (1276)
..+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .+..+|. .|.+|++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 37899999999999986 579999999999999999998865 5899999999999999 5777765 578999999999
Q ss_pred cccccccccCccc-cCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 675 NFNVLSLKEMPKG-FGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 675 l~~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
+++|. +..+|.. |+++++|++|++..+.. . .+
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l---------------~-----------------------------~~-- 163 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNVAHNLI---------------Q-----------------------------SF-- 163 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCC---------------C-----------------------------CC--
T ss_pred CCCCc-CCCCChhhhhcCcccCeeccccCcc---------------c-----------------------------cC--
Confidence 99987 7777754 77777777664332210 0 00
Q ss_pred EecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCc-cCCCCCCC----ceeEEEEccCCCCCCCCCCCC
Q 037340 754 EWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPV-WLGDPSFS----KLVLLRVLSCGMCTSLPPVGQ 828 (1276)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~----~L~~L~L~~~~~~~~l~~l~~ 828 (1276)
.....+..+++|+.|+++++....++. .+. .+. .+..++++.+.+....+....
T Consensus 164 -------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~L~~l~~~~~~~~ls~n~l~~i~~~~~~ 222 (635)
T 4g8a_A 164 -------------------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFK 222 (635)
T ss_dssp -------------------CCCGGGGGCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred -------------------CCchhhccchhhhhhcccCcccccccccccc--chhhhhhhhhhhhcccCcccccCccccc
Confidence 001122334556666666655544322 111 111 122344444443322222222
Q ss_pred CCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEec--CC---CCc
Q 037340 829 LLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVG--CS---ELQ 903 (1276)
Q Consensus 829 l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~--c~---~L~ 903 (1276)
...+..+.+.++.....+.... +..++.++...+.. +. .+.
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~----------------------------------~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTC----------------------------------IQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHH----------------------------------HHTTTTCEEEEEEEECCTTSCCCS
T ss_pred chhhhhhhhhcccccccccchh----------------------------------hcCCcccccccccccccccccccc
Confidence 2333344443331111110100 12233333333221 00 011
Q ss_pred CCCCCCC---CCccEEEEeccc------CccccccCCCCccEEEEccCCcccccccccCCCccEEEEccCCCcccchhhh
Q 037340 904 GTLPERF---PLLKKLVIVGCE------QLLVTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLF 974 (1276)
Q Consensus 904 ~~~p~~l---~~L~~L~i~~~~------~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~ 974 (1276)
...+..+ ..+....+.... .....+..+.+++.+.+.++.......+....+|+.|++.+|. +....
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~ 344 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK----FGQFP 344 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCE----ESSCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccc----ccCcC
Confidence 0011111 112222221111 1122344456777777777765555556667778888888775 33333
Q ss_pred ccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEccccccccc
Q 037340 975 EQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRG 1054 (1276)
Q Consensus 975 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~ 1054 (1276)
...+..|+.+.+.+...... .....+++|+.|++++|....... . ...+... .+++.+++..+.
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~------~~~~~l~~L~~L~ls~n~l~~~~~-~---~~~~~~~-~~L~~L~~~~~~----- 408 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNA------FSEVDLPSLEFLDLSRNGLSFKGC-C---SQSDFGT-ISLKYLDLSFNG----- 408 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCB------CCCCBCTTCCEEECCSSCCBEEEE-C---CHHHHSC-SCCCEEECCSCS-----
T ss_pred cccchhhhhcccccccCCCC------cccccccccccchhhccccccccc-c---ccchhhh-hhhhhhhccccc-----
Confidence 34566777777665543322 234467788888887763211100 0 0000011 144444444322
Q ss_pred ccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCccc-ccCCCCCccceeeeccC
Q 037340 1055 SSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALP-NSMHNLTSLLHLEIGRC 1133 (1276)
Q Consensus 1055 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c 1133 (1276)
...++..+..+++|+.+++.+|......+ ..+.++++|+.++++.|
T Consensus 409 ---------------------------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 409 ---------------------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp ---------------------------------EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred ---------------------------------cccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 12233334445566666666654444333 34556666666666666
Q ss_pred CCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCcc--CCCCCCCcCeeeccCCCCCccc
Q 037340 1134 PSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVS--SPRFPASLTELKISDMPSLERL 1209 (1276)
Q Consensus 1134 ~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l 1209 (1276)
. +..++.. ..+++|+.|++++|.+........+..+++|++|+|++|...-.. ....+++|++|+|++|. ++.+
T Consensus 456 ~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l 533 (635)
T 4g8a_A 456 H-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSL 533 (635)
T ss_dssp C-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBC
T ss_pred c-cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCC
Confidence 6 3333322 345666666666666443333233666666777777665332211 11245667777777753 4444
Q ss_pred c-CCCCCCCCcCceeccCCCCCcccCCCC---CccccccccccCChhH
Q 037340 1210 S-SIGENLTSLKFLDLDNCPKLKYFSKQG---LPKSLLRLIIDECPLI 1253 (1276)
Q Consensus 1210 ~-~~~~~l~~L~~L~l~~c~~l~~l~~~~---l~~~L~~L~i~~cp~l 1253 (1276)
+ ..+.++++|++|++++|. ++.++... +|++|+.|+++++|.-
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 3 345677777777777773 55554432 3467777777777765
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.4e-24 Score=256.71 Aligned_cols=84 Identities=23% Similarity=0.170 Sum_probs=63.3
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
+.++++|++|++++|.++.+| .|+.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEE
Confidence 445677888888888888776 6788888888888888888775 778888888888887 455554 7777888888
Q ss_pred ecccccccccC
Q 037340 674 INFNVLSLKEM 684 (1276)
Q Consensus 674 ~l~~~~~l~~l 684 (1276)
++++|. +..+
T Consensus 112 ~L~~N~-l~~l 121 (457)
T 3bz5_A 112 NCDTNK-LTKL 121 (457)
T ss_dssp ECCSSC-CSCC
T ss_pred ECCCCc-CCee
Confidence 887776 5444
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.3e-24 Score=256.38 Aligned_cols=96 Identities=22% Similarity=0.343 Sum_probs=64.3
Q ss_pred CCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecc
Q 037340 597 LPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINF 676 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 676 (1276)
+++|+.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++| .+..+|. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 3456777777777777763 6677777777777777777765 777777777777777 4555554 7777777777777
Q ss_pred cccccccCccccCCccccccCC
Q 037340 677 NVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 677 ~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
+|. +..+|. ++++++|++|+
T Consensus 121 ~n~-l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 121 NNQ-ITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp SSC-CCCCGG-GTTCTTCSEEE
T ss_pred CCC-CCCChH-HcCCCCCCEEE
Confidence 765 555543 45555555443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.9e-24 Score=253.82 Aligned_cols=118 Identities=18% Similarity=0.110 Sum_probs=98.2
Q ss_pred cccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhcc
Q 037340 564 SICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSL 643 (1276)
Q Consensus 564 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L 643 (1276)
.+.++++|+.|.+.++.... ++.+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~-------~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD-------MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC-------CTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ChhHcCCCCEEEccCCCccc-------ChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 45678889999988765321 235888999999999999999986 899999999999999999986 9999
Q ss_pred ccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCC
Q 037340 644 YNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++|+.|+
T Consensus 106 ~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~ 154 (457)
T 3bz5_A 106 TKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELD 154 (457)
T ss_dssp TTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEE
T ss_pred CcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEE
Confidence 99999999999 666675 8999999999999998 76663 66666666554
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.6e-23 Score=244.59 Aligned_cols=344 Identities=17% Similarity=0.157 Sum_probs=193.9
Q ss_pred CCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCC
Q 037340 782 QALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPS 861 (1276)
Q Consensus 782 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~ 861 (1276)
++++.|.+.++....+|... .+++|+.|++++|.+.... +++++++|++|++++|. +..++. ++ .+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~---~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--~~-----~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVE---YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADITP--LA-----NLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGG---GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GT-----TCTT
T ss_pred ccccEEecCCCCCccCcchh---hhcCCCEEECCCCccCCch-hhhccccCCEEECCCCc-cccChh--hc-----CCCC
Confidence 45677777777666666421 4677777777777654433 37777777777777763 333322 22 2677
Q ss_pred cceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCC--CCCCCccEEEEecccCccccccCCCCccEEEE
Q 037340 862 LETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLP--ERFPLLKKLVIVGCEQLLVTIQCLPVLSELHI 939 (1276)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p--~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L 939 (1276)
|+.|+++++. +....+ +..+++|++|++++|. +. .++ ..+++|+.|.+.++......+..+++|+.|++
T Consensus 114 L~~L~L~~n~-l~~~~~------~~~l~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 114 LTGLTLFNNQ-ITDIDP------LKNLTNLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 184 (466)
T ss_dssp CCEEECCSSC-CCCCGG------GTTCTTCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEEC
T ss_pred CCEEECCCCC-CCCChH------HcCCCCCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEEC
Confidence 7777777763 333211 4567777777777753 44 222 23455555555433222233555666666666
Q ss_pred ccCCcccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCC
Q 037340 940 DGCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQ 1019 (1276)
Q Consensus 940 ~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~ 1019 (1276)
++|.......+..+++|++|++++|......+ ...+++|+.|++.++..... ..+..+++|+.|++++|.
T Consensus 185 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~- 254 (466)
T 1o6v_A 185 SSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQ- 254 (466)
T ss_dssp CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSC-
T ss_pred cCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCc-
Confidence 66664444455566666666666654211111 12233444444433321111 123334444444444431
Q ss_pred cccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCC
Q 037340 1020 LLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPST 1099 (1276)
Q Consensus 1020 l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~ 1099 (1276)
+.. ++. +..++
T Consensus 255 l~~--------------------------------------------------------------------~~~-~~~l~ 265 (466)
T 1o6v_A 255 ISN--------------------------------------------------------------------LAP-LSGLT 265 (466)
T ss_dssp CCC--------------------------------------------------------------------CGG-GTTCT
T ss_pred ccc--------------------------------------------------------------------chh-hhcCC
Confidence 110 111 23345
Q ss_pred CeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEec
Q 037340 1100 KLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKIS 1179 (1276)
Q Consensus 1100 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls 1179 (1276)
+|++|++++|...+ +|. +..+++|++|++++|. +..++..+.+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECC
Confidence 77777777774433 333 6677777777777776 5555555566777777777777776554 4567777777777
Q ss_pred CCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccC
Q 037340 1180 GGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFS 1234 (1276)
Q Consensus 1180 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 1234 (1276)
+|...-......+++|+.|++++|......| +..+++|+.|++++|+ ++.+|
T Consensus 340 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE-EECCC
T ss_pred CCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc-ccCCc
Confidence 7643333333356777888888765444444 6778888888888874 44444
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.7e-23 Score=248.82 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCccc-cc-chhhhccccccEEecCCccchhhhccccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQ-FL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 674 (1276)
++|++|+|++|.++.+ |..|+++++|++|+|++|.+. .+ |..|.++++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4455555555555544 445555555555555555553 33 33455555555555555532222344555555555555
Q ss_pred ccccc
Q 037340 675 NFNVL 679 (1276)
Q Consensus 675 l~~~~ 679 (1276)
+++|.
T Consensus 110 L~~n~ 114 (455)
T 3v47_A 110 LTQCN 114 (455)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 55554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.7e-22 Score=235.94 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=71.6
Q ss_pred CCceEEEEecCccccccCcc-cccccccceeeccCCcccccch-hhhccccccEEecCCccchhhh-ccccCCcccccee
Q 037340 597 LPRLRVFSLRGYCISKLPNE-IGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHL 673 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L 673 (1276)
++++++|+++++.++.+|.. +..+++|++|+|++|.+..+|. .+.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEE
Confidence 46788888888888888755 5788888888888888887754 68888888888888884 4444 4557788888888
Q ss_pred ecccccccccCccc-cCCccccccC
Q 037340 674 INFNVLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~-i~~L~~L~~L 697 (1276)
++++|. +..+|.. ++++++|++|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 888876 6666544 2444433333
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1e-21 Score=235.00 Aligned_cols=379 Identities=16% Similarity=0.128 Sum_probs=214.9
Q ss_pred EEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceee
Q 037340 788 TILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLR 866 (1276)
Q Consensus 788 ~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~ 866 (1276)
+..+.....+|. + .++|+.|++++|.+.+..|. ++++++|++|++++|.....++...+.. +++|++|+
T Consensus 16 ~c~~~~l~~lp~-l----~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-----l~~L~~L~ 85 (455)
T 3v47_A 16 ICINRGLHQVPE-L----PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-----LSSLIILK 85 (455)
T ss_dssp ECCSSCCSSCCC-C----CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-----CTTCCEEE
T ss_pred CcCCCCcccCCC-C----CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc-----cccCCEEe
Confidence 333444455554 2 25677777777766554343 6677777777777765544554443332 66677777
Q ss_pred ccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCccc
Q 037340 867 FHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVV 946 (1276)
Q Consensus 867 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 946 (1276)
++++. +....+. .++.+++|++|++++|. +++.+|.. ..+..+++|++|++++|....
T Consensus 86 Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~n~-l~~~~~~~----------------~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 86 LDYNQ-FLQLETG----AFNGLANLEVLTLTQCN-LDGAVLSG----------------NFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp CTTCT-TCEECTT----TTTTCTTCCEEECTTSC-CBTHHHHS----------------STTTTCTTCCEEECCSSBCCS
T ss_pred CCCCc-cCccChh----hccCcccCCEEeCCCCC-CCccccCc----------------ccccCcccCCEEECCCCccCc
Confidence 76663 2222221 25556677777776643 33211110 113445556666666655222
Q ss_pred --ccc-cccCCCccEEEEccCCCcccchhhhccCC-----CCCceEEEecCCCCccccc----cccccCCCCCCcceEEE
Q 037340 947 --FSS-LINFSSLKSIFLRDIANQVVLAGLFEQGL-----PKLENLQICYVHEQTYLWQ----SETRLLHDISSLNQLQI 1014 (1276)
Q Consensus 947 --~~~-~~~l~~L~~L~L~~n~~l~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~----~~~~~~~~l~~L~~L~l 1014 (1276)
+.. +.++++|++|++++|.. .+..+..+ .+++.|++.++........ .....+..+++|+.|++
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKV----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCB----SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEEC
T ss_pred cCcccccCCCCcccEEeCCCCcc----cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEec
Confidence 122 45566666666666652 22211122 2333333333222111000 00112345678888888
Q ss_pred ecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCC
Q 037340 1015 SGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEE 1094 (1276)
Q Consensus 1015 s~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~ 1094 (1276)
++|.-....+...... ....+|+.|++++|....... . . ............
T Consensus 220 s~n~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~-~-~-----------------------~~~~~~~~~~~~ 270 (455)
T 3v47_A 220 SGNGFKESMAKRFFDA----IAGTKIQSLILSNSYNMGSSF-G-H-----------------------TNFKDPDNFTFK 270 (455)
T ss_dssp TTSCCCHHHHHHHHHH----TTTCCEEEEECTTCTTTSCCT-T-C-----------------------CSSCCCCTTTTG
T ss_pred CCCcccccchhhhhcc----ccccceeeEeecccccccccc-c-h-----------------------hhhccCcccccc
Confidence 8874332222110000 001367777777764331100 0 0 000011111111
Q ss_pred CCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCC
Q 037340 1095 GLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNS 1172 (1276)
Q Consensus 1095 ~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~ 1172 (1276)
....++|++|++++|...+..|..+..+++|++|++++|. +..++.. +.+++|++|++++|.+.+..+.. +.++++
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~ 348 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDK 348 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTT
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcChhH-hcCccc
Confidence 1124689999999998887788889999999999999998 6666433 45789999999999987766554 788999
Q ss_pred cceEEecCCCCCCc--cCCCCCCCcCeeeccCCCCCccccCC-CCCCCCcCceeccCCCCCcccC
Q 037340 1173 LRKLKISGGFPDLV--SSPRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCPKLKYFS 1234 (1276)
Q Consensus 1173 L~~L~Ls~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~ 1234 (1276)
|++|++++|..... .....+++|++|++++| .++.+|.. +..+++|++|++++|+--...|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999754322 12236789999999995 46666654 4889999999999997444444
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.7e-22 Score=228.39 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=65.6
Q ss_pred CCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceee
Q 037340 595 LNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLI 674 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 674 (1276)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 356778888888888888764 7888888888888888888876 888888888888888 555554 477888888888
Q ss_pred cccccccccCc
Q 037340 675 NFNVLSLKEMP 685 (1276)
Q Consensus 675 l~~~~~l~~lp 685 (1276)
+++|. +..+|
T Consensus 117 l~~n~-i~~~~ 126 (347)
T 4fmz_A 117 LNEDN-ISDIS 126 (347)
T ss_dssp CTTSC-CCCCG
T ss_pred CcCCc-ccCch
Confidence 87776 44443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.7e-22 Score=244.43 Aligned_cols=89 Identities=17% Similarity=0.299 Sum_probs=66.6
Q ss_pred CCceEEEEecCccccccCcc-cccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhc-cccCCcccccee
Q 037340 597 LPRLRVFSLRGYCISKLPNE-IGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHL 673 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L 673 (1276)
+.++++|++++|.+..+|.. |..+++|++|+|++|.|..+|. .|+.+++|++|+|++|. +..+| ..++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEE
Confidence 46778888888888888754 5778888888888888887754 78888888888888884 44444 446788888888
Q ss_pred ecccccccccCccc
Q 037340 674 INFNVLSLKEMPKG 687 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~ 687 (1276)
++++|. +..+|..
T Consensus 129 ~L~~n~-l~~l~~~ 141 (597)
T 3oja_B 129 VLERND-LSSLPRG 141 (597)
T ss_dssp ECCSSC-CCCCCTT
T ss_pred EeeCCC-CCCCCHH
Confidence 888876 6666544
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=3.3e-20 Score=223.10 Aligned_cols=286 Identities=19% Similarity=0.155 Sum_probs=159.9
Q ss_pred EEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCC-CCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcce
Q 037340 786 ELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLP-PVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLET 864 (1276)
Q Consensus 786 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~ 864 (1276)
.++..+.....+|..+ .++++.|+|++|.+....+ .++.+++|++|+|++| .+..+.+..++. +++|+.
T Consensus 15 ~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~-----l~~L~~ 84 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNN-----LFNLRT 84 (477)
T ss_dssp EEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-----CTTCCE
T ss_pred EEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhC-----CccCCE
Confidence 3444455556666543 3577888888887665444 3777888888888877 444454433332 677777
Q ss_pred eeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCc
Q 037340 865 LRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRR 944 (1276)
Q Consensus 865 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~ 944 (1276)
|+++++. +..+... .+..+++|++|++++|. +.+..| ..+..+++|++|++++|..
T Consensus 85 L~L~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n~-i~~~~~------------------~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 85 LGLRSNR-LKLIPLG----VFTGLSNLTKLDISENK-IVILLD------------------YMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp EECCSSC-CCSCCTT----SSTTCTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEEECCTTC
T ss_pred EECCCCc-CCccCcc----cccCCCCCCEEECCCCc-cccCCh------------------hHccccccCCEEECCCCcc
Confidence 7777763 3332221 24567777777777743 442222 2344566677777776652
Q ss_pred c--cccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCccc
Q 037340 945 V--VFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLS 1022 (1276)
Q Consensus 945 ~--~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~ 1022 (1276)
. ....+.++++|++|++++|.. ..++......+++|+.|++.++...... +..+..+++|+.|++++|..+..
T Consensus 141 ~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 141 VYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIR----DYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCCCEEC----TTCSCSCTTCCEEEEECCTTCCE
T ss_pred ceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcCcEeC----hhhcccCcccceeeCCCCccccc
Confidence 2 234566677777777777642 2222222334555555555544432221 33455566666666666543332
Q ss_pred ccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCee
Q 037340 1023 LVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLT 1102 (1276)
Q Consensus 1023 ~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~ 1102 (1276)
++ .......+|+
T Consensus 216 ~~--------------------------------------------------------------------~~~~~~~~L~ 227 (477)
T 2id5_A 216 MT--------------------------------------------------------------------PNCLYGLNLT 227 (477)
T ss_dssp EC--------------------------------------------------------------------TTTTTTCCCS
T ss_pred cC--------------------------------------------------------------------cccccCcccc
Confidence 22 2222233666
Q ss_pred EEEEeecCCCCccc-ccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcceEEec
Q 037340 1103 ELMIWSCENLKALP-NSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKIS 1179 (1276)
Q Consensus 1103 ~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls 1179 (1276)
+|++++|... .+| ..+.++++|++|++++|. +..++.. ..+++|+.|++++|.+.+..+.. +..+++|+.|+|+
T Consensus 228 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~ 304 (477)
T 2id5_A 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA-FRGLNYLRVLNVS 304 (477)
T ss_dssp EEEEESSCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTT-BTTCTTCCEEECC
T ss_pred EEECcCCccc-ccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHH-hcCcccCCEEECC
Confidence 6777666333 343 455666777777777666 5555443 33566677777776666554443 5566666666666
Q ss_pred CC
Q 037340 1180 GG 1181 (1276)
Q Consensus 1180 ~~ 1181 (1276)
+|
T Consensus 305 ~N 306 (477)
T 2id5_A 305 GN 306 (477)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1e-20 Score=217.22 Aligned_cols=305 Identities=17% Similarity=0.140 Sum_probs=164.1
Q ss_pred CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCC
Q 037340 826 VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGT 905 (1276)
Q Consensus 826 l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 905 (1276)
+..+++|+.|+++++. +..++. + ..+++|++|+++++. +..+.. +..+++|++|++++| .++ .
T Consensus 40 ~~~l~~L~~L~l~~~~-i~~~~~-~------~~~~~L~~L~l~~n~-i~~~~~------~~~l~~L~~L~L~~n-~i~-~ 102 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-VASIQG-I------EYLTNLEYLNLNGNQ-ITDISP------LSNLVKLTNLYIGTN-KIT-D 102 (347)
T ss_dssp HHHHTTCSEEECCSSC-CCCCTT-G------GGCTTCCEEECCSSC-CCCCGG------GTTCTTCCEEECCSS-CCC-C
T ss_pred chhcccccEEEEeCCc-cccchh-h------hhcCCccEEEccCCc-cccchh------hhcCCcCCEEEccCC-ccc-C
Confidence 4467778888887763 333321 1 226677777776662 322211 445666777777664 233 1
Q ss_pred CCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEE
Q 037340 906 LPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQ 985 (1276)
Q Consensus 906 ~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~ 985 (1276)
+ ..+..+++|++|++++|.......+..+++|+.|++++|.....+.. ...+++|+.|.
T Consensus 103 ~-------------------~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~ 161 (347)
T 4fmz_A 103 I-------------------SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLT 161 (347)
T ss_dssp C-------------------GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEE
T ss_pred c-------------------hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccc--hhhCCCCcEEE
Confidence 1 12455666777777776644444466666777777776654433222 23444555555
Q ss_pred EecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccC
Q 037340 986 ICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSF 1065 (1276)
Q Consensus 986 l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l 1065 (1276)
+.++...... .+..+++|+.|++++|. +..++
T Consensus 162 l~~~~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~----------------------------------------- 193 (347)
T 4fmz_A 162 VTESKVKDVT------PIANLTDLYSLSLNYNQ-IEDIS----------------------------------------- 193 (347)
T ss_dssp CCSSCCCCCG------GGGGCTTCSEEECTTSC-CCCCG-----------------------------------------
T ss_pred ecCCCcCCch------hhccCCCCCEEEccCCc-ccccc-----------------------------------------
Confidence 5444322211 14445555555555541 11111
Q ss_pred CCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCC
Q 037340 1066 SSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFP 1145 (1276)
Q Consensus 1066 ~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 1145 (1276)
. +..+++|+.|++++|.... ++. +..+++|++|++++|. ++.++....+
T Consensus 194 ---------------------------~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l 242 (347)
T 4fmz_A 194 ---------------------------P-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNK-ITDLSPLANL 242 (347)
T ss_dssp ---------------------------G-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred ---------------------------c-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCc-cCCCcchhcC
Confidence 0 1123456666666653332 222 5556666666666665 4444444455
Q ss_pred CCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceecc
Q 037340 1146 TNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLD 1225 (1276)
Q Consensus 1146 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 1225 (1276)
++|++|++++|.+.+.. .+..+++|++|++++|...-......+++|+.|++++|......|..+..+++|++|+++
T Consensus 243 ~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 66666666666655431 255666666666666533322222345667777777765444445455677777777777
Q ss_pred CCCCCcccCCCCCccccccccccCCh
Q 037340 1226 NCPKLKYFSKQGLPKSLLRLIIDECP 1251 (1276)
Q Consensus 1226 ~c~~l~~l~~~~l~~~L~~L~i~~cp 1251 (1276)
+|+ ++.++.....++|+.|++++|+
T Consensus 320 ~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred CCc-cccccChhhhhccceeehhhhc
Confidence 775 5555443334577777777775
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.5e-21 Score=225.98 Aligned_cols=303 Identities=16% Similarity=0.115 Sum_probs=220.2
Q ss_pred CCCCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccc-hhhhcc
Q 037340 567 GVKHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLP-DSINSL 643 (1276)
Q Consensus 567 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L 643 (1276)
.++++|.+.+.++.. ..++.. |..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+..+| ..++++
T Consensus 43 ~l~~l~~l~l~~~~l------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEE------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCceEEEecCCch------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 467888888876532 122333 677899999999999999886 58999999999999999999885 458999
Q ss_pred ccccEEecCCccchhhhccc-cCCccccceeecccccccccCcc-ccCCccccccCCceEeccCCCCCchhhcccccccc
Q 037340 644 YNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFNVLSLKEMPK-GFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQG 721 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~ 721 (1276)
++|++|++++| .+..+|.. +..+++|++|++++|. +..++. .++.+++|++|++..+.....
T Consensus 117 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------- 180 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV-------------- 180 (390)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC--------------
T ss_pred CCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc--------------
Confidence 99999999999 67788876 5899999999999998 777654 488888888886644321110
Q ss_pred ceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccC
Q 037340 722 TLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWL 801 (1276)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 801 (1276)
.+..+++|+.|.+..+.. ..+..+++|+.|+++++....+|..
T Consensus 181 -------------------~~~~l~~L~~L~l~~n~l-----------------~~~~~~~~L~~L~l~~n~l~~~~~~- 223 (390)
T 3o6n_A 181 -------------------DLSLIPSLFHANVSYNLL-----------------STLAIPIAVEELDASHNSINVVRGP- 223 (390)
T ss_dssp -------------------CGGGCTTCSEEECCSSCC-----------------SEEECCSSCSEEECCSSCCCEEECC-
T ss_pred -------------------ccccccccceeecccccc-----------------cccCCCCcceEEECCCCeeeecccc-
Confidence 122234566666654432 2233456899999999888777664
Q ss_pred CCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCc
Q 037340 802 GDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGA 881 (1276)
Q Consensus 802 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 881 (1276)
.+++|+.|++++|.+.. .+.++.+++|+.|++++|. +..+.+..++. +++|+.|+++++. +..+...
T Consensus 224 ---~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~L~~n~-l~~~~~~-- 290 (390)
T 3o6n_A 224 ---VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVK-----MQRLERLYISNNR-LVALNLY-- 290 (390)
T ss_dssp ---CCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSC-CCEEESGGGTT-----CSSCCEEECCSSC-CCEEECS--
T ss_pred ---ccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCc-CCCcChhHccc-----cccCCEEECCCCc-CcccCcc--
Confidence 35789999999998764 4668889999999999985 44443333333 7899999998873 4443322
Q ss_pred cccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcccccccccCCCccEEEE
Q 037340 882 GQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFL 961 (1276)
Q Consensus 882 ~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L 961 (1276)
...+++|+.|++++| .+. .+|. .+..+++|+.|++++|..... .+..+++|+.|++
T Consensus 291 ---~~~l~~L~~L~L~~n-~l~-~~~~------------------~~~~l~~L~~L~L~~N~i~~~-~~~~~~~L~~L~l 346 (390)
T 3o6n_A 291 ---GQPIPTLKVLDLSHN-HLL-HVER------------------NQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTL 346 (390)
T ss_dssp ---SSCCTTCCEEECCSS-CCC-CCGG------------------GHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEEC
T ss_pred ---cCCCCCCCEEECCCC-cce-ecCc------------------cccccCcCCEEECCCCcccee-CchhhccCCEEEc
Confidence 456889999999885 455 3332 234467788888888874433 3677888999999
Q ss_pred ccCC
Q 037340 962 RDIA 965 (1276)
Q Consensus 962 ~~n~ 965 (1276)
++|+
T Consensus 347 ~~N~ 350 (390)
T 3o6n_A 347 SHND 350 (390)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9987
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=226.31 Aligned_cols=98 Identities=26% Similarity=0.301 Sum_probs=60.7
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 674 (1276)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.|..+ |..|.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 4566777777777666 35667777777777777766655 556677777777777766 45555543 56677777777
Q ss_pred cccccccccC-ccccCCccccccC
Q 037340 675 NFNVLSLKEM-PKGFGKLTCLLTL 697 (1276)
Q Consensus 675 l~~~~~l~~l-p~~i~~L~~L~~L 697 (1276)
+++|. +..+ |..+.++++|++|
T Consensus 111 Ls~n~-i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 111 ISENK-IVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCCc-cccCChhHccccccCCEE
Confidence 77666 4433 2334444444444
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.5e-20 Score=212.39 Aligned_cols=217 Identities=21% Similarity=0.322 Sum_probs=152.0
Q ss_pred CCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 596 NLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
....+++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999 56699999999999999999
Q ss_pred ccccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEe
Q 037340 676 FNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEW 755 (1276)
Q Consensus 676 ~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 755 (1276)
++|..+..+|..++...-
T Consensus 158 ~~n~~~~~~p~~~~~~~~-------------------------------------------------------------- 175 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA-------------------------------------------------------------- 175 (328)
T ss_dssp EEETTCCCCCSCSEEEC---------------------------------------------------------------
T ss_pred CCCCCccccChhHhhccc--------------------------------------------------------------
Confidence 998767777765443100
Q ss_pred cCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCCccee
Q 037340 756 SARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHL 835 (1276)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 835 (1276)
...+..+++|+.|+++++....+|.++. .+++|+.|++++|.+....+.++.+++|+.|
T Consensus 176 -------------------~~~~~~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 176 -------------------SGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp -------------------CCCEEESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred -------------------hhhhccCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 0001123345555555555555565544 4566666666666655433346666666666
Q ss_pred eecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCC
Q 037340 836 EISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPE 908 (1276)
Q Consensus 836 ~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~ 908 (1276)
++++|.....++..+. .+++|+.|++++|.....+... ++.+++|+.|++++|+.+. .+|.
T Consensus 235 ~Ls~n~~~~~~p~~~~------~l~~L~~L~L~~n~~~~~~p~~-----~~~l~~L~~L~L~~n~~~~-~iP~ 295 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFG------GRAPLKRLILKDCSNLLTLPLD-----IHRLTQLEKLDLRGCVNLS-RLPS 295 (328)
T ss_dssp ECTTCTTCCBCCCCTT------CCCCCCEEECTTCTTCCBCCTT-----GGGCTTCCEEECTTCTTCC-CCCG
T ss_pred ECcCCcchhhhHHHhc------CCCCCCEEECCCCCchhhcchh-----hhcCCCCCEEeCCCCCchh-hccH
Confidence 6666655555443322 2566666666666544333222 5567777888887766444 5664
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.7e-20 Score=229.47 Aligned_cols=303 Identities=16% Similarity=0.108 Sum_probs=221.5
Q ss_pred CCCCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccch-hhhcc
Q 037340 567 GVKHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLPD-SINSL 643 (1276)
Q Consensus 567 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L 643 (1276)
.+.+++.+.+.++.. ..+++. |..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+..+|. .|+++
T Consensus 49 ~l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 456788888776532 223333 678899999999999999886 589999999999999999998865 47999
Q ss_pred ccccEEecCCccchhhhccc-cCCccccceeecccccccccCcc-ccCCccccccCCceEeccCCCCCchhhcccccccc
Q 037340 644 YNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFNVLSLKEMPK-GFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQG 721 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~ 721 (1276)
++|++|++++| .+..+|.. ++++++|++|++++|. +..+|. .++.+++|++|++..+.....
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------- 186 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV-------------- 186 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC--------------
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc--------------
Confidence 99999999999 67778776 5899999999999998 766655 588999999886543321100
Q ss_pred ceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccC
Q 037340 722 TLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWL 801 (1276)
Q Consensus 722 ~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 801 (1276)
.+..+++|+.|.+..+.. ..+..+++|+.|+++++....+|..+
T Consensus 187 -------------------~~~~l~~L~~L~l~~n~l-----------------~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 187 -------------------DLSLIPSLFHANVSYNLL-----------------STLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp -------------------CGGGCTTCSEEECCSSCC-----------------SEEECCTTCSEEECCSSCCCEEECSC
T ss_pred -------------------ChhhhhhhhhhhcccCcc-----------------ccccCCchhheeeccCCccccccccc
Confidence 022234566666654432 23345678999999999887777654
Q ss_pred CCCCCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCc
Q 037340 802 GDPSFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGA 881 (1276)
Q Consensus 802 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 881 (1276)
.++|+.|++++|.+.+ .+.++.+++|+.|+|++|.. ..+.+..++. +++|+.|++++| .+..+...
T Consensus 231 ----~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~l~~~-- 296 (597)
T 3oja_B 231 ----NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNEL-EKIMYHPFVK-----MQRLERLYISNN-RLVALNLY-- 296 (597)
T ss_dssp ----CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CEEESGGGTT-----CSSCCEEECTTS-CCCEEECS--
T ss_pred ----CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCcc-CCCCHHHhcC-----ccCCCEEECCCC-CCCCCCcc--
Confidence 4689999999998765 46688899999999999854 4443333333 889999999987 34443332
Q ss_pred cccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcccccccccCCCccEEEE
Q 037340 882 GQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFL 961 (1276)
Q Consensus 882 ~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L 961 (1276)
...+|+|+.|++++|. +. .+|. .+..+++|+.|++++|..... .+..+++|+.|++
T Consensus 297 ---~~~l~~L~~L~Ls~N~-l~-~i~~------------------~~~~l~~L~~L~L~~N~l~~~-~~~~~~~L~~L~l 352 (597)
T 3oja_B 297 ---GQPIPTLKVLDLSHNH-LL-HVER------------------NQPQFDRLENLYLDHNSIVTL-KLSTHHTLKNLTL 352 (597)
T ss_dssp ---SSCCTTCCEEECCSSC-CC-CCGG------------------GHHHHTTCSEEECCSSCCCCC-CCCTTCCCSEEEC
T ss_pred ---cccCCCCcEEECCCCC-CC-ccCc------------------ccccCCCCCEEECCCCCCCCc-ChhhcCCCCEEEe
Confidence 4568899999999854 55 3442 234567788888888874433 3677888999999
Q ss_pred ccCC
Q 037340 962 RDIA 965 (1276)
Q Consensus 962 ~~n~ 965 (1276)
++|+
T Consensus 353 ~~N~ 356 (597)
T 3oja_B 353 SHND 356 (597)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9887
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.4e-19 Score=202.56 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=100.1
Q ss_pred cCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCCCceeeCCcccCCCC
Q 037340 777 ILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSC 855 (1276)
Q Consensus 777 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~ 855 (1276)
.+..+++|+.|+++++....+|..+ +++|+.|++++|.+....+. ++.+++|+.|++++|. +..++...++
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--- 237 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLA--- 237 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGG---
T ss_pred hccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhcc---
Confidence 3445677888888888888777654 37888999998887655443 7888889999998874 4445443332
Q ss_pred CCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCcc
Q 037340 856 SVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLS 935 (1276)
Q Consensus 856 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~ 935 (1276)
.+++|+.|++++|. +..+.. .+..+++|++|++++| .+++..+..|.... .....+.|+
T Consensus 238 --~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~------------~~~~~~~l~ 296 (330)
T 1xku_A 238 --NTPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHNN-NISAIGSNDFCPPG------------YNTKKASYS 296 (330)
T ss_dssp --GSTTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCSS-CCCCCCTTSSSCSS------------CCTTSCCCS
T ss_pred --CCCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCCC-cCCccChhhcCCcc------------ccccccccc
Confidence 27788888888873 333222 2567788888888884 46632222221110 011245677
Q ss_pred EEEEccCCc----ccccccccCCCccEEEEccC
Q 037340 936 ELHIDGCRR----VVFSSLINFSSLKSIFLRDI 964 (1276)
Q Consensus 936 ~L~L~~~~~----~~~~~~~~l~~L~~L~L~~n 964 (1276)
.|++++|+. ..+..+..+.+++.+++++|
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ceEeecCcccccccCccccccccceeEEEeccc
Confidence 777777773 22445666777777777766
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=6.6e-19 Score=200.25 Aligned_cols=154 Identities=12% Similarity=-0.003 Sum_probs=92.1
Q ss_pred CccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCC-CCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCC
Q 037340 783 ALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLP-PVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPS 861 (1276)
Q Consensus 783 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~ 861 (1276)
+|+.|+++++....+|..+ +++|+.|++++|.+....+ .++.+++|+.|++++|. +..++...++ .+++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~-----~l~~ 242 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLS-----FLPT 242 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGG-----GCTT
T ss_pred ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhh-----CCCC
Confidence 6777777777777777654 3678888888888766554 37888888888888873 4444443332 2778
Q ss_pred cceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEcc
Q 037340 862 LETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDG 941 (1276)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~ 941 (1276)
|+.|++++|. +..+.. .+..+++|+.|+++++ .++...+..+.... .....++|+.|++++
T Consensus 243 L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~------------~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 243 LRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHTN-NITKVGVNDFCPVG------------FGVKRAYYNGISLFN 303 (332)
T ss_dssp CCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCSS-CCCBCCTTSSSCSS------------CCSSSCCBSEEECCS
T ss_pred CCEEECCCCc-CeecCh-----hhhcCccCCEEECCCC-CCCccChhHccccc------------cccccccccceEeec
Confidence 8888888773 333222 2556788888888874 46532222221100 001145566777777
Q ss_pred CCcc----cccccccCCCccEEEEccCC
Q 037340 942 CRRV----VFSSLINFSSLKSIFLRDIA 965 (1276)
Q Consensus 942 ~~~~----~~~~~~~l~~L~~L~L~~n~ 965 (1276)
|+.. .+..+..+++|+.|++++|.
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CcccccccCcccccccchhhhhhccccc
Confidence 7632 23445666677777776654
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2e-19 Score=203.00 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=101.0
Q ss_pred CCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhcccccc
Q 037340 568 VKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLY 647 (1276)
Q Consensus 568 ~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 647 (1276)
..+++.|.+.++.. ..++..+.++++|++|+|++|.++.+|..|+++++|++|+|++|.+..+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCC------SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCc------hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 35566666666532 122334667899999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccchhhhccccCC---------ccccceeecccccccccCccccCCccccccCC
Q 037340 648 TILLEDCYWLKKLCQDMGN---------LTKLHHLINFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 648 ~L~l~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
+|++++|..+..+|..+.. +++|++|++++|. +..+|..++++++|++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK 212 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE
Confidence 9999999888889987765 8889999988887 777776666665555553
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=9e-18 Score=190.77 Aligned_cols=284 Identities=13% Similarity=0.106 Sum_probs=161.8
Q ss_pred CccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCC-CCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCC
Q 037340 783 ALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLP-PVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPS 861 (1276)
Q Consensus 783 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~ 861 (1276)
+++.++++++....+|..+ .++|+.|++++|.+....+ .++.+++|++|++++|. +..+.+..++. +++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP-----LVK 101 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT-----CTT
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcC-----CCC
Confidence 5677777777777777654 3577888888887665544 37778888888887763 33333322222 566
Q ss_pred cceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEcc
Q 037340 862 LETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDG 941 (1276)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~ 941 (1276)
|+.|+++++. +..+.. ..+++|++|++++|. +.+ ++ ...+..+++|+.|++++
T Consensus 102 L~~L~Ls~n~-l~~l~~-------~~~~~L~~L~l~~n~-l~~-~~-----------------~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 102 LERLYLSKNQ-LKELPE-------KMPKTLQELRVHENE-ITK-VR-----------------KSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CCEEECCSSC-CSBCCS-------SCCTTCCEEECCSSC-CCB-BC-----------------HHHHTTCTTCCEEECCS
T ss_pred CCEEECCCCc-CCccCh-------hhcccccEEECCCCc-ccc-cC-----------------HhHhcCCccccEEECCC
Confidence 6666666552 222111 123556666665532 331 11 12345667777777777
Q ss_pred CCc----ccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecC
Q 037340 942 CRR----VVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGC 1017 (1276)
Q Consensus 942 ~~~----~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c 1017 (1276)
|.. .....+.++++|++|++++|... .++. ...++|+.|++.++..... .+..+..+++|+.|++++|
T Consensus 155 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ---GLPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS---SCCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSS
T ss_pred CcCCccCcChhhccCCCCcCEEECCCCccc-cCCc---cccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCC
Confidence 763 23445666777777777777521 1111 1224455555444432211 1334555555666655554
Q ss_pred CCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCC
Q 037340 1018 SQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLP 1097 (1276)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~ 1097 (1276)
. ++.++ +..+..
T Consensus 227 ~-l~~~~-------------------------------------------------------------------~~~~~~ 238 (330)
T 1xku_A 227 S-ISAVD-------------------------------------------------------------------NGSLAN 238 (330)
T ss_dssp C-CCEEC-------------------------------------------------------------------TTTGGG
T ss_pred c-CceeC-------------------------------------------------------------------hhhccC
Confidence 1 11100 112233
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCC--------CCCCceeEeecCCCCc-cccccccC
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGF--------PTNLQSLEFEDLKISK-PLFQWGLN 1168 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~n~~~~-~~~~~~l~ 1168 (1276)
+++|++|++++| .+..+|..+..+++|++|++++|. ++.++...+ .++|+.|++++|++.. ..+...+.
T Consensus 239 l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 568888888888 455778888888888888888887 777765433 3567788888887753 12222366
Q ss_pred CCCCcceEEecCC
Q 037340 1169 RFNSLRKLKISGG 1181 (1276)
Q Consensus 1169 ~l~~L~~L~Ls~~ 1181 (1276)
.+++|+.+++++|
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 6777777777664
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=8.2e-18 Score=191.21 Aligned_cols=281 Identities=12% Similarity=0.090 Sum_probs=149.9
Q ss_pred CccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCC-CCCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCC
Q 037340 783 ALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLP-PVGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPS 861 (1276)
Q Consensus 783 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~ 861 (1276)
+++.++++++....+|..+ .++|+.|++++|.+....+ .++++++|++|++++|. +..+.+..++. +++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSP-----LRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTT-----CTT
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhC-----cCC
Confidence 5777777777777777654 3577778888777655444 37777777777777763 44443333322 566
Q ss_pred cceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEcc
Q 037340 862 LETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDG 941 (1276)
Q Consensus 862 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~ 941 (1276)
|+.|+++++. +..+... .+++|++|+++++ .+. .+|. ..+..+++|+.|++++
T Consensus 104 L~~L~L~~n~-l~~l~~~-------~~~~L~~L~l~~n-~i~-~~~~-----------------~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 104 LQKLYISKNH-LVEIPPN-------LPSSLVELRIHDN-RIR-KVPK-----------------GVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCEEECCSSC-CCSCCSS-------CCTTCCEEECCSS-CCC-CCCS-----------------GGGSSCSSCCEEECCS
T ss_pred CCEEECCCCc-CCccCcc-------ccccCCEEECCCC-ccC-ccCH-----------------hHhCCCccCCEEECCC
Confidence 6666666552 2221111 1255566665553 233 1221 2244556666666666
Q ss_pred CCcc----cccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecC
Q 037340 942 CRRV----VFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGC 1017 (1276)
Q Consensus 942 ~~~~----~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c 1017 (1276)
|... .+..+..+ +|+.|++++|... .++. ...++|+.|++.++..... .+..+..+++|+.|++++|
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~---~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPK---DLPETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCS---SSCSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSS
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCCC-ccCc---cccCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCC
Confidence 6531 22334444 5666666665411 1111 1113333333333321111 1223334444444444433
Q ss_pred CCcccccccccccccCCCcccccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccC-CCCC
Q 037340 1018 SQLLSLVTEEEHDQQQPELPCRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFP-EEGL 1096 (1276)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p-~~~~ 1096 (1276)
. +..++ ..+.
T Consensus 228 ~---------------------------------------------------------------------l~~~~~~~~~ 238 (332)
T 2ft3_A 228 Q---------------------------------------------------------------------IRMIENGSLS 238 (332)
T ss_dssp C---------------------------------------------------------------------CCCCCTTGGG
T ss_pred c---------------------------------------------------------------------CCcCChhHhh
Confidence 1 11111 1223
Q ss_pred CCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCC--------CCCCceeEeecCCCC--ccccccc
Q 037340 1097 PSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGF--------PTNLQSLEFEDLKIS--KPLFQWG 1166 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~n~~~--~~~~~~~ 1166 (1276)
.+++|++|++++| .+..+|..+..+++|++|++++|. ++.++...+ .++|+.|++++|++. +..+. .
T Consensus 239 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-~ 315 (332)
T 2ft3_A 239 FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-T 315 (332)
T ss_dssp GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-G
T ss_pred CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcc-c
Confidence 3567888888888 444777778888888888888887 666664422 355777888888766 33332 3
Q ss_pred cCCCCCcceEEecCC
Q 037340 1167 LNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1167 l~~l~~L~~L~Ls~~ 1181 (1276)
+..+++|+.+++++|
T Consensus 316 ~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNY 330 (332)
T ss_dssp GTTBCCSTTEEC---
T ss_pred ccccchhhhhhcccc
Confidence 666777777777664
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=6.7e-20 Score=227.51 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=44.3
Q ss_pred CCCceEEEEecCcccccc-Ccccccc--cccceeeccCCc-cc--ccchhhhccccccEEecCCccchhh----hccccC
Q 037340 596 NLPRLRVFSLRGYCISKL-PNEIGNL--KHLRFLNLSGTS-IQ--FLPDSINSLYNLYTILLEDCYWLKK----LCQDMG 665 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~l-p~~i~~L--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~l~~~~~l~~----lp~~i~ 665 (1276)
.+++|++|+|++|.++.. +..+..+ .+|++|+|++|. +. .++..+.++++|++|++++|..... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 566677777776655522 3334332 336777776654 21 2333344666677777766632111 222234
Q ss_pred Cccccceeeccccc
Q 037340 666 NLTKLHHLINFNVL 679 (1276)
Q Consensus 666 ~L~~L~~L~l~~~~ 679 (1276)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 55666666666655
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=6e-19 Score=198.03 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=70.5
Q ss_pred HhcCCCCceEEEEecC-cccc-ccCcccccccccceeeccCCccc-ccchhhhccccccEEecCCccchhhhccccCCcc
Q 037340 592 QMLLNLPRLRVFSLRG-YCIS-KLPNEIGNLKHLRFLNLSGTSIQ-FLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLT 668 (1276)
Q Consensus 592 ~~l~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~ 668 (1276)
..|.++++|++|+|++ |.+. .+|..|+++++|++|+|++|.+. .+|..+.++++|++|++++|.....+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3466667777777774 5555 55666777777777777777776 5666677777777777777743336666677777
Q ss_pred ccceeecccccccc-cCccccCCcc-ccccCCc
Q 037340 669 KLHHLINFNVLSLK-EMPKGFGKLT-CLLTLRR 699 (1276)
Q Consensus 669 ~L~~L~l~~~~~l~-~lp~~i~~L~-~L~~L~~ 699 (1276)
+|++|++++|. +. .+|..+++++ +|+.|++
T Consensus 150 ~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 150 NLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTI 181 (313)
T ss_dssp TCCEEECCSSC-CEEECCGGGGCCCTTCCEEEC
T ss_pred CCCeEECcCCc-ccCcCCHHHhhhhhcCcEEEC
Confidence 77777777766 44 5666666665 5665543
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=1.2e-17 Score=202.70 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=71.4
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeeccc
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~ 677 (1276)
..+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|++++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 358889999999999988776 789999999999998887 5788999999998 5777876 678899999998
Q ss_pred ccccccCccccCCccccccCCc
Q 037340 678 VLSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 678 ~~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
|. +..+|. .+++|+.|++
T Consensus 111 N~-l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 111 NP-LTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp CC-CCCCCC---CCTTCCEEEC
T ss_pred Cc-CCCCCC---CCCCcCEEEC
Confidence 87 777776 3455555543
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=2.9e-18 Score=192.36 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=113.6
Q ss_pred CCCCCeeEEEEeecCCCCcccccCCCCC-ccceeeeccCCCCcccCCC-CCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1096 LPSTKLTELMIWSCENLKALPNSMHNLT-SLLHLEIGRCPSLVSFPED-GFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1096 ~~~~~L~~L~l~~~~~l~~lp~~l~~l~-~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
..+++|++|++++|...+.+|..+..++ +|++|++++|.....+|.. +.+. |+.|++++|.+.+..+.. +..+++|
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~-~~~l~~L 223 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNT 223 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG-CCTTSCC
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH-HhcCCCC
Confidence 3456788888888866667777777777 7888888887733344433 2233 888888888877665554 7788888
Q ss_pred ceEEecCCCCC-CccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCCccccccccccCChh
Q 037340 1174 RKLKISGGFPD-LVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECPL 1252 (1276)
Q Consensus 1174 ~~L~Ls~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~cp~ 1252 (1276)
+.|++++|... .......+++|++|++++|.....+|..+..+++|++|++++|+.-..+|...-.++|+.|++.++|.
T Consensus 224 ~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred CEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCC
Confidence 88888886332 22223356789999999877666888888899999999999996544777766567899999999997
Q ss_pred H
Q 037340 1253 I 1253 (1276)
Q Consensus 1253 l 1253 (1276)
+
T Consensus 304 l 304 (313)
T 1ogq_A 304 L 304 (313)
T ss_dssp E
T ss_pred c
Confidence 7
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=2.8e-19 Score=221.90 Aligned_cols=368 Identities=14% Similarity=0.069 Sum_probs=198.3
Q ss_pred CCCCcceeeccccccCCcchhhHHHHhcCC-CC-ceEEEEecCcc-cc--ccCcccccccccceeeccCCcccc-----c
Q 037340 567 GVKHLRTFLPMKLKYGGTFLAWSVLQMLLN-LP-RLRVFSLRGYC-IS--KLPNEIGNLKHLRFLNLSGTSIQF-----L 636 (1276)
Q Consensus 567 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~-l~-~Lr~L~L~~~~-i~--~lp~~i~~L~~Lr~L~L~~~~i~~-----l 636 (1276)
.+++|+.|.+.++. +....+..+.. ++ +|++|+|++|. ++ .++..+..+++|++|+|++|.+.. +
T Consensus 110 ~~~~L~~L~L~~~~-----i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-----VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCB-----CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccE-----ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 56778888777653 22333333333 33 48888887775 22 233334577788888888887642 3
Q ss_pred chhhhccccccEEecCCccch----hhhccccCCccccceeecccccccccCccccCCccccccCCceEeccCCCCCchh
Q 037340 637 PDSINSLYNLYTILLEDCYWL----KKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRE 712 (1276)
Q Consensus 637 p~~i~~L~~L~~L~l~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~ 712 (1276)
+..+.++++|++|++++|... ..++..+.++++|++|++++|. +..+|..++.+++|+.|.+.......
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~------ 257 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI------ 257 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT------
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc------
Confidence 444567788888888777432 3555556677888888888776 66666556666666655332110000
Q ss_pred hccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEecc
Q 037340 713 LRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGY 792 (1276)
Q Consensus 713 L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 792 (1276)
........+..+++|+.|.+.+.
T Consensus 258 ---------------------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 258 ---------------------------------------------------------GMPEKYMNLVFPRKLCRLGLSYM 280 (592)
T ss_dssp ---------------------------------------------------------TCTTSSSCCCCCTTCCEEEETTC
T ss_pred ---------------------------------------------------------chHHHHHHhhccccccccCcccc
Confidence 00011223344566777777666
Q ss_pred CCCCCCccCCCCCCCceeEEEEccCCCCCC-CCC-CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccc-
Q 037340 793 GGTKFPVWLGDPSFSKLVLLRVLSCGMCTS-LPP-VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHD- 869 (1276)
Q Consensus 793 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~- 869 (1276)
....+|..+. .+++|++|++++|.+... ++. ++.+++|+.|+++++-.-..+ ..+. ..+++|+.|++.+
T Consensus 281 ~~~~l~~~~~--~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l-~~~~-----~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 281 GPNEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL-EVLA-----QYCKQLKRLRIERG 352 (592)
T ss_dssp CTTTGGGGGG--GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH-HHHH-----HHCTTCCEEEEECC
T ss_pred chhHHHHHHh--hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHH-HHHH-----HhCCCCCEEEeecC
Confidence 5555666554 567888888888774321 211 566778888887733111110 1111 1267777777774
Q ss_pred ---------cccccccccCCccccccCCCCccEEEEecCCCCcCCCC----CCCCCccEEEEecc---cCccc-------
Q 037340 870 ---------MQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLP----ERFPLLKKLVIVGC---EQLLV------- 926 (1276)
Q Consensus 870 ---------~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p----~~l~~L~~L~i~~~---~~l~~------- 926 (1276)
+..+...... .....+++|++|++ .|+.+++..+ ..+++|+.|.+.+| ..+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~---~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLI---ALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHH---HHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred ccccccccccCccCHHHHH---HHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 4333221110 00234777888877 3455543222 23566777777643 23321
Q ss_pred --cccCCCCccEEEEccCCcc-c---cccc-ccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccc
Q 037340 927 --TIQCLPVLSELHIDGCRRV-V---FSSL-INFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSE 999 (1276)
Q Consensus 927 --~~~~l~~L~~L~L~~~~~~-~---~~~~-~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 999 (1276)
.+..+++|++|++++|... . +..+ ..+++|++|++++|.............+++|+.|++.+|. ... ...
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~--~~~ 505 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSE--RAI 505 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBH--HHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcH--HHH
Confidence 1344677777777655421 1 1122 2366777777777652211111223456667777777666 211 111
Q ss_pred cccCCCCCCcceEEEecCC
Q 037340 1000 TRLLHDISSLNQLQISGCS 1018 (1276)
Q Consensus 1000 ~~~~~~l~~L~~L~ls~c~ 1018 (1276)
+.....+++|+.|++++|.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 2233456677777777764
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=187.58 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=62.1
Q ss_pred eEEEEecCccccccCcccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhh-ccccCCccccceeeccc
Q 037340 600 LRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 600 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~~ 677 (1276)
..+.+++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC
Confidence 3446677777777776554 377777777777777655 5777777777777777 34444 44577777777777777
Q ss_pred ccccccCccc-cCCccccccCC
Q 037340 678 VLSLKEMPKG-FGKLTCLLTLR 698 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L~ 698 (1276)
|. +..+|.. ++++++|++|+
T Consensus 110 n~-l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 110 NY-LSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp SC-CSSCCHHHHTTCTTCSEEE
T ss_pred Cc-CCcCCHhHhCCCccCCEEE
Confidence 76 6666554 55555555553
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=7.1e-16 Score=187.13 Aligned_cols=118 Identities=25% Similarity=0.314 Sum_probs=92.7
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEE
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLK 1177 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 1177 (1276)
+++|+.|++++|. +..+|.. +++|+.|++++|. ++.+|. .+++|+.|++++|.+.+.. ..+++|+.|+
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~-l~~l~~--~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~ 247 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNR-LTSLPA--LPSGLKELIVSGNRLTSLP-----VLPSELKELM 247 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSSCCSCCC-----CCCTTCCEEE
T ss_pred CCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCc-ccccCC--CCCCCCEEEccCCccCcCC-----CCCCcCcEEE
Confidence 5789999999884 4456643 4788999999887 777774 4688999999999887633 3468899999
Q ss_pred ecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCC
Q 037340 1178 ISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKL 1230 (1276)
Q Consensus 1178 Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 1230 (1276)
+++|... .++..+++|+.|++++| .++.+|..+.++++|+.|++++|+.-
T Consensus 248 Ls~N~L~--~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 248 VSGNRLT--SLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSSCCS--CCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCCCCC--cCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCCC
Confidence 9987433 44557789999999996 56688988899999999999999743
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=8.5e-17 Score=180.60 Aligned_cols=99 Identities=23% Similarity=0.221 Sum_probs=74.8
Q ss_pred CceEEEEecCccccccCcc-cccccccceeeccCCccccc---chhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 598 PRLRVFSLRGYCISKLPNE-IGNLKHLRFLNLSGTSIQFL---PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
++|++|+|++|.++.+|.. |.++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 5688888888888888754 68888888888888887755 667777888888888888 566777778888888888
Q ss_pred ecccccccccCcc--ccCCccccccCC
Q 037340 674 INFNVLSLKEMPK--GFGKLTCLLTLR 698 (1276)
Q Consensus 674 ~l~~~~~l~~lp~--~i~~L~~L~~L~ 698 (1276)
++++|. +..++. .+..+++|++|+
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEEE
Confidence 888877 666653 455555555553
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=180.85 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCCCeeEEEEeecCCCCcccc-cCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcce
Q 037340 1097 PSTKLTELMIWSCENLKALPN-SMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRK 1175 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 1175 (1276)
.+++|++|++++|..++.++. .+.++++|++|++++|. ++.+|....+++|++|+|++|.+.+..+.. +.++++|+.
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~ 235 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAIRPGS-FQGLMHLQK 235 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEECTTSCCCEECTTT-TTTCTTCCE
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEECCCCccCccChhh-hccCccCCE
Confidence 456777777777666666554 46677777777777776 667776666777777777777776655543 677777777
Q ss_pred EEecCCCCCCccC--CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCC
Q 037340 1176 LKISGGFPDLVSS--PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1176 L~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1228 (1276)
|++++|....... ...+++|+.|+|++| .++.+|. .+..+++|+.|++++||
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 7777764332221 124567777777775 4555553 34677888888888776
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=3.5e-19 Score=213.54 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=67.5
Q ss_pred CCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCcccc-----ccCcccccccccceeeccCCccccc-chhh-
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGYCIS-----KLPNEIGNLKHLRFLNLSGTSIQFL-PDSI- 640 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i- 640 (1276)
++|+.|.+.++. +....... +..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+... +..+
T Consensus 3 ~~l~~L~Ls~~~-----l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhcc-----cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 345666665543 22222333 666777778888887776 4466677777888888888777642 3333
Q ss_pred hccc----cccEEecCCccch----hhhccccCCccccceeeccccc
Q 037340 641 NSLY----NLYTILLEDCYWL----KKLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 641 ~~L~----~L~~L~l~~~~~l----~~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
..+. +|++|++++|... ..+|..+..+++|++|++++|.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 3344 5888888877422 2556777777888888887776
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.4e-16 Score=178.88 Aligned_cols=95 Identities=21% Similarity=0.107 Sum_probs=78.8
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccchh-hhccccccEEecCCccchhhh---ccccCCccccceeecc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCYWLKKL---CQDMGNLTKLHHLINF 676 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l---p~~i~~L~~L~~L~l~ 676 (1276)
+.++++++.++.+|..+. .+|++|+|++|.++.+|.. +.++++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 368889999999998664 6899999999999999876 689999999999999 44433 5667789999999999
Q ss_pred cccccccCccccCCccccccCCc
Q 037340 677 NVLSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 677 ~~~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
+|. +..+|..+..+++|++|++
T Consensus 87 ~n~-i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 87 FNG-VITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp SCS-EEEEEEEEETCTTCCEEEC
T ss_pred CCc-cccChhhcCCCCCCCEEEC
Confidence 998 7788777777777776643
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=2.1e-16 Score=187.82 Aligned_cols=221 Identities=20% Similarity=0.201 Sum_probs=133.7
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCcccccc-hhhhccccccEEecCCccchhhhccc-cCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 674 (1276)
++|++|+|++|.++.+ |..|.++++|++|+|++|.|..++ ..|.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 5678888888888876 567888888888888888888764 56888888888888888 45566544 77888888888
Q ss_pred cccccccccCcc-ccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 675 NFNVLSLKEMPK-GFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 675 l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
+++|. +..+|. .+.++++|+.|++..+. .+. .
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~--------------~l~-----------------------------~--- 186 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLGELK--------------KLE-----------------------------Y--- 186 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCT--------------TCC-----------------------------E---
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCCCCC--------------Ccc-----------------------------c---
Confidence 88887 666665 36666666666432211 000 0
Q ss_pred EecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCc
Q 037340 754 EWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFL 832 (1276)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 832 (1276)
.....+..+++|+.|+++++....+|... .+++|+.|++++|.+....|. +..+++|
T Consensus 187 -------------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 244 (452)
T 3zyi_A 187 -------------------ISEGAFEGLFNLKYLNLGMCNIKDMPNLT---PLVGLEELEMSGNHFPEIRPGSFHGLSSL 244 (452)
T ss_dssp -------------------ECTTTTTTCTTCCEEECTTSCCSSCCCCT---TCTTCCEEECTTSCCSEECGGGGTTCTTC
T ss_pred -------------------cChhhccCCCCCCEEECCCCccccccccc---ccccccEEECcCCcCcccCcccccCccCC
Confidence 00012333455666666666655555422 456666666666665544443 6666666
Q ss_pred ceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecC
Q 037340 833 KHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGC 899 (1276)
Q Consensus 833 ~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c 899 (1276)
+.|++++|. +..+....+.. +++|+.|++++| .+..+... .+..+++|+.|+++++
T Consensus 245 ~~L~L~~n~-l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 245 KKLWVMNSQ-VSLIERNAFDG-----LASLVELNLAHN-NLSSLPHD----LFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSC-CCEECTTTTTT-----CTTCCEEECCSS-CCSCCCTT----SSTTCTTCCEEECCSS
T ss_pred CEEEeCCCc-CceECHHHhcC-----CCCCCEEECCCC-cCCccChH----HhccccCCCEEEccCC
Confidence 666666653 33333333222 556666666655 23322221 1344556666666554
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=4.9e-16 Score=183.94 Aligned_cols=222 Identities=19% Similarity=0.216 Sum_probs=141.5
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCcccccc-hhhhccccccEEecCCccchhhhcc-ccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 674 (1276)
+.+++|+|++|.++.++ ..|.++++|++|+|++|.|..++ ..|.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 56788888888888774 67888888888888888888775 56888888888888888 5666665 578888888888
Q ss_pred cccccccccCcc-ccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 675 NFNVLSLKEMPK-GFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 675 l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
+++|. +..+|. .+.++++|++|++..+.. +.
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~--------------l~--------------------------------- 174 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLGELKR--------------LS--------------------------------- 174 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCTT--------------CC---------------------------------
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCCCCCC--------------cc---------------------------------
Confidence 88887 666665 366666666664322110 00
Q ss_pred EecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCc
Q 037340 754 EWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFL 832 (1276)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L 832 (1276)
......+..+++|+.|+++++....+|... .+++|+.|+|++|.+....|. +..+++|
T Consensus 175 ------------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 175 ------------------YISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp ------------------EECTTTTTTCSSCCEEECTTSCCSSCCCCT---TCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ------------------eeCcchhhcccccCeecCCCCcCccccccC---CCcccCEEECCCCccCccChhhhccCccC
Confidence 000112334556666667666666666422 466777777777766554443 6677777
Q ss_pred ceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCC
Q 037340 833 KHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCS 900 (1276)
Q Consensus 833 ~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 900 (1276)
+.|+|++| .+..++...+.. +++|+.|++++| .+..+... .+..+++|+.|++++++
T Consensus 234 ~~L~L~~n-~l~~~~~~~~~~-----l~~L~~L~L~~N-~l~~~~~~----~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQS-QIQVIERNAFDN-----LQSLVEINLAHN-NLTLLPHD----LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTC-CCCEECTTSSTT-----CTTCCEEECTTS-CCCCCCTT----TTSSCTTCCEEECCSSC
T ss_pred CEEECCCC-ceeEEChhhhcC-----CCCCCEEECCCC-CCCccChh----HhccccCCCEEEcCCCC
Confidence 77777766 344444433332 666777777665 23332221 24456666666666644
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=1.2e-15 Score=181.21 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=101.5
Q ss_pred CCCCCCeeEEEEeecCCCCcccc-cCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1095 GLPSTKLTELMIWSCENLKALPN-SMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1095 ~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
+..+++|+.|++++|..++.+|. .+.++++|++|++++|. +..+|....+++|++|++++|.+.+..+.. +.++++|
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 244 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGS-FHGLSSL 244 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGG-GTTCTTC
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCccc-ccCccCC
Confidence 34567888888888878877764 57888999999999887 777887777889999999999988776654 8888999
Q ss_pred ceEEecCCCCCCccC--CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCC
Q 037340 1174 RKLKISGGFPDLVSS--PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1174 ~~L~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1228 (1276)
+.|++++|....... ...+++|+.|+|++| .++.+|. .+..+++|++|++++||
T Consensus 245 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 999998875443222 225678999999986 4566664 45788999999999886
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=7.8e-20 Score=219.20 Aligned_cols=129 Identities=22% Similarity=0.164 Sum_probs=91.4
Q ss_pred CCCeeEEEEeecCCCCc----ccccCCCCCccceeeeccCCCCcccCCC-------CCCCCCceeEeecCCCCccc----
Q 037340 1098 STKLTELMIWSCENLKA----LPNSMHNLTSLLHLEIGRCPSLVSFPED-------GFPTNLQSLEFEDLKISKPL---- 1162 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-------~~~~~L~~L~l~~n~~~~~~---- 1162 (1276)
+++|++|++++|..... ++..+..+++|++|++++|. ++..... ...++|++|++++|.+.+..
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 46888899988844432 66777778999999999987 5432110 12368999999999987652
Q ss_pred cccccCCCCCcceEEecCCCCCCccC-------CCCCCCcCeeeccCCCCCc----cccCCCCCCCCcCceeccCCC
Q 037340 1163 FQWGLNRFNSLRKLKISGGFPDLVSS-------PRFPASLTELKISDMPSLE----RLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1163 ~~~~l~~l~~L~~L~Ls~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
+. .+..+++|++|++++|...-... ....++|++|++++|..-. .+|..+..+++|++|++++|+
T Consensus 334 ~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 334 SS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 22 25677899999999874322111 1125699999999975443 677677788999999999995
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.1e-18 Score=216.58 Aligned_cols=106 Identities=17% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCCeeEEEEe-----ecCCCCccc------ccCCCCCccceeeeccCCCCcccC--CCC-CCCCCceeEeecCCCCcccc
Q 037340 1098 STKLTELMIW-----SCENLKALP------NSMHNLTSLLHLEIGRCPSLVSFP--EDG-FPTNLQSLEFEDLKISKPLF 1163 (1276)
Q Consensus 1098 ~~~L~~L~l~-----~~~~l~~lp------~~l~~l~~L~~L~l~~c~~l~~l~--~~~-~~~~L~~L~l~~n~~~~~~~ 1163 (1276)
+++|+.|+++ +|..++..| ..+.++++|++|++++ .++... ..+ .+++|+.|++++|.+.+...
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 4567777777 344444322 1245566777777755 222211 111 25667777777777654443
Q ss_pred ccccCCCCCcceEEecCCCCCCcc---CCCCCCCcCeeeccCCCC
Q 037340 1164 QWGLNRFNSLRKLKISGGFPDLVS---SPRFPASLTELKISDMPS 1205 (1276)
Q Consensus 1164 ~~~l~~l~~L~~L~Ls~~~~~~~~---~~~~~~~L~~L~l~~~~~ 1205 (1276)
.....++++|++|+|++|...-.. ....+++|++|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 321244666666666664321111 111345555666655544
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=180.79 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=64.4
Q ss_pred CceEEEEecCccccccCc-ccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLPN-EIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 674 (1276)
++|++|++++|.++.+|. .|.++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 356667777776666654 566677777777777766655 344666777777777766 44555544 66667777777
Q ss_pred cccccccccCcc--ccCCccccccCCceE
Q 037340 675 NFNVLSLKEMPK--GFGKLTCLLTLRRFV 701 (1276)
Q Consensus 675 l~~~~~l~~lp~--~i~~L~~L~~L~~~~ 701 (1276)
+++|. +..+|. .++++++|++|++..
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCC
Confidence 76665 566655 356666666665443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=6.9e-18 Score=209.56 Aligned_cols=401 Identities=15% Similarity=0.105 Sum_probs=192.5
Q ss_pred ccCCCCcceeeccccccCCcc---------hhhHHHHh-cCCCCceEEEEecCcccccc-Ccccc-cccccceeeccCC-
Q 037340 565 ICGVKHLRTFLPMKLKYGGTF---------LAWSVLQM-LLNLPRLRVFSLRGYCISKL-PNEIG-NLKHLRFLNLSGT- 631 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~~~~~~~---------~~~~~~~~-l~~l~~Lr~L~L~~~~i~~l-p~~i~-~L~~Lr~L~L~~~- 631 (1276)
+..+++|+.|.+.++.....+ .....+.. ...+++|+.|+|++|.++.. +..+. .+++|++|+|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 456777888877664210000 00111222 45677888888888877633 34453 6788888888888
Q ss_pred cccc--cchhhhccccccEEecCCccc----hhhhccccCCccccceeeccccc-cc--ccCccccCCccccccCCceEe
Q 037340 632 SIQF--LPDSINSLYNLYTILLEDCYW----LKKLCQDMGNLTKLHHLINFNVL-SL--KEMPKGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 632 ~i~~--lp~~i~~L~~L~~L~l~~~~~----l~~lp~~i~~L~~L~~L~l~~~~-~l--~~lp~~i~~L~~L~~L~~~~~ 702 (1276)
.+.. ++..+.++++|++|++++|.. ...++.....+++|++|++++|. .+ ..++.-+.++++|++|++..+
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5554 556566888888999888841 12233334467788888888774 01 011111223455555543221
Q ss_pred ccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCC
Q 037340 703 GKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQ 782 (1276)
Q Consensus 703 ~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 782 (1276)
. .+ .. ....+..+++|+.|.+..+.. ....... ......+..++
T Consensus 222 ~-----~~------------------------~~-l~~~~~~~~~L~~L~l~~~~~-----~~~~~~~-~~l~~~l~~~~ 265 (594)
T 2p1m_B 222 V-----PL------------------------EK-LATLLQRAPQLEELGTGGYTA-----EVRPDVY-SGLSVALSGCK 265 (594)
T ss_dssp S-----CH------------------------HH-HHHHHHHCTTCSEEECSBCCC-----CCCHHHH-HHHHHHHHTCT
T ss_pred C-----cH------------------------HH-HHHHHhcCCcceEcccccccC-----ccchhhH-HHHHHHHhcCC
Confidence 0 01 11 223334445666666543321 0111111 11223445566
Q ss_pred CccEE-EEeccCCCCCCccCCCCCCCceeEEEEccCCCCCC-CCC-CCCCCCcceeeecCCCCceeeC-CcccCCCCCCC
Q 037340 783 ALQEL-TILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTS-LPP-VGQLLFLKHLEISGMDGVKSVG-PEFYGDSCSVP 858 (1276)
Q Consensus 783 ~L~~L-~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~-l~~l~~L~~L~L~~~~~~~~i~-~~~~~~~~~~~ 858 (1276)
+|+.| .+.+.....+|..+. .+++|+.|++++|.+... ++. +..+++|+.|++++| +.... ..+. ..
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~-----~~ 336 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA-----ST 336 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH-----HH
T ss_pred CcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH-----Hh
Confidence 77776 233333233333322 357788888887773321 121 456777888887766 11110 0010 12
Q ss_pred CCCcceeecccc--------ccccccccCCccccccCCCCccEEEEecCCCCcCCCC----CCCCCccEEEEe-----cc
Q 037340 859 FPSLETLRFHDM--------QEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLP----ERFPLLKKLVIV-----GC 921 (1276)
Q Consensus 859 ~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p----~~l~~L~~L~i~-----~~ 921 (1276)
+++|+.|++.++ ..+...... .....+++|+.|.+ +|+.+++..+ ..+++|+.|.+. +|
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~---~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLV---SVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHH---HHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHH---HHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 567777777432 111110000 00123677777744 3354442111 134566666666 33
Q ss_pred cCccc---------cccCCCCccEEEEccCCc-cccccccc-CCCccEEEEccCCCcccchhhhccCCCCCceEEEecCC
Q 037340 922 EQLLV---------TIQCLPVLSELHIDGCRR-VVFSSLIN-FSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVH 990 (1276)
Q Consensus 922 ~~l~~---------~~~~l~~L~~L~L~~~~~-~~~~~~~~-l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~ 990 (1276)
..+.. .+..+++|+.|+++++-. ..+..+.. +++|+.|++++|.........+...+++|+.|++.+|.
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 33320 133455666666654211 11122222 55666666666652111111111234555555555554
Q ss_pred CCccccccccccCCCCCCcceEEEecC
Q 037340 991 EQTYLWQSETRLLHDISSLNQLQISGC 1017 (1276)
Q Consensus 991 ~~~~~~~~~~~~~~~l~~L~~L~ls~c 1017 (1276)
.... ........+++|+.|++++|
T Consensus 493 ~~~~---~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 493 FGDK---ALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CCHH---HHHHTGGGGGGSSEEEEESS
T ss_pred CcHH---HHHHHHHhCCCCCEEeeeCC
Confidence 3111 01112233455555555555
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=8.7e-17 Score=181.02 Aligned_cols=135 Identities=11% Similarity=0.016 Sum_probs=96.1
Q ss_pred CCCCCeeEEEEeecCCCCcccccC-CCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcc
Q 037340 1096 LPSTKLTELMIWSCENLKALPNSM-HNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLR 1174 (1276)
Q Consensus 1096 ~~~~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 1174 (1276)
..+++|++|++++|......|..+ ..+++|++|++++|. ++.++....+++|++|++++|.+.+..+. +..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~ 217 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVT 217 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCS
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhh--hcccCccc
Confidence 345789999999986666555555 478999999999998 77777777789999999999998875543 67788888
Q ss_pred eEEecCCCCCC-ccCCCCCCCcCeeeccCCCCC-ccccCCCCCCCCcCceeccCCCCCccc
Q 037340 1175 KLKISGGFPDL-VSSPRFPASLTELKISDMPSL-ERLSSIGENLTSLKFLDLDNCPKLKYF 1233 (1276)
Q Consensus 1175 ~L~Ls~~~~~~-~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l 1233 (1276)
.|++++|.... ......+++|+.|++++|+.. ..+|..+..+++|+.|++++|+.++..
T Consensus 218 ~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 88888864331 111224567777777776654 355555566777777777766555443
No 70
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.61 E-value=7.2e-16 Score=140.06 Aligned_cols=79 Identities=30% Similarity=0.443 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 037340 12 SVELLIEKLASQGLELFKRHKKLKADFIKWKGMLEMIQAVLADAEDR--QTREKSVKMWLDNLQNLAYDAEDVLDEFETE 89 (1276)
Q Consensus 12 ~~~~l~~kl~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~ed~ld~~~~~ 89 (1276)
+++.+++||++.+.+++....||++++++|+++|++|+++|.+|+.+ +..++.++.|++||||+|||||||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999998 5678999999999999999999999999988
Q ss_pred H
Q 037340 90 A 90 (1276)
Q Consensus 90 ~ 90 (1276)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.4e-16 Score=179.21 Aligned_cols=251 Identities=14% Similarity=0.082 Sum_probs=161.0
Q ss_pred cCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
+..+++|++|+|++|.++.++ ..|+++++|++|+|++|.++.++. +..+++|++|++++| .+..+| .+++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCCcCE
Confidence 566778888888888887765 577888888888888888876655 788888888888887 455554 3478888
Q ss_pred eecccccccccCccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceE
Q 037340 673 LINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALL 752 (1276)
Q Consensus 673 L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~ 752 (1276)
|++++|. +..++.. .+++|++|++..+.... .....+..+++|+.|+
T Consensus 104 L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~------------------------------~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 104 LHAANNN-ISRVSCS--RGQGKKNIYLANNKITM------------------------------LRDLDEGCRSRVQYLD 150 (317)
T ss_dssp EECCSSC-CSEEEEC--CCSSCEEEECCSSCCCS------------------------------GGGBCTGGGSSEEEEE
T ss_pred EECCCCc-cCCcCcc--ccCCCCEEECCCCCCCC------------------------------ccchhhhccCCCCEEE
Confidence 8888877 6665533 24556665443322110 0011122334555565
Q ss_pred EEecCCCccccCCCchhhHHhhhccC-CCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCCCCCCCC
Q 037340 753 LEWSARPRRVCNLNQSEFQTCVLSIL-KPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPPVGQLLF 831 (1276)
Q Consensus 753 l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 831 (1276)
++.+... ......+ ..+++|+.|+++++....+|... .+++|+.|++++|.+....+.++.+++
T Consensus 151 Ls~N~l~------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 151 LKLNEID------------TVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp CTTSCCC------------EEEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred CCCCCCC------------cccHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCc
Confidence 5544330 0111222 23567888888888777766544 377888888888887655455777888
Q ss_pred cceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCCCCccEEEEecCCCCcCCCCCC
Q 037340 832 LKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGFPKLQMLSLVGCSELQGTLPER 909 (1276)
Q Consensus 832 L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~p~~ 909 (1276)
|+.|++++| .+..++..+. .+++|+.|++++++-.....+. .+..+++|+.|++.+++.+++..|..
T Consensus 216 L~~L~L~~N-~l~~l~~~~~------~l~~L~~L~l~~N~~~~~~~~~----~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 216 VTWISLRNN-KLVLIEKALR------FSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CSEEECTTS-CCCEECTTCC------CCTTCCEEECTTCCCBHHHHHH----HHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccEEECcCC-cccchhhHhh------cCCCCCEEEccCCCccCcCHHH----HHhccccceEEECCCchhccCCchhc
Confidence 888888887 4556655432 2788888888887533122211 24568888888888777777655543
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.60 E-value=5.1e-15 Score=174.09 Aligned_cols=313 Identities=13% Similarity=0.020 Sum_probs=186.2
Q ss_pred CeeecchhhHHHHHHHH-hcCCCCCCCCccEEEE--EecCCChHHHHHHHHhcchhhhcc-----cc-cEEEEEEcCCCC
Q 037340 186 AKVYGREKDKEAIVELL-LRDDLRADDGFPVISI--NGMGGVGKTTLAQLVYNDDRVQRH-----FQ-IKAWTCVSEDFD 256 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~~-----f~-~~~wv~~~~~~~ 256 (1276)
..|+||+++++++.+++ ...........+.+.| +|++|+||||||+++++. .... |+ .++|+.+....+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCC
Confidence 57999999999999998 4321100023456777 999999999999999984 3322 22 356777767778
Q ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccC------HhhHhhhccCCCCC---C--CC
Q 037340 257 VSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNEN------YENWSILSRPFGVG---A--PG 323 (1276)
Q Consensus 257 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~------~~~~~~~~~~l~~~---~--~g 323 (1276)
...++..++.+++........+...+...+.+.+. +++++||+||+|.-. .+.+..+...+... + .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 88999999999876533233445566666666664 779999999996621 23344333332211 2 44
Q ss_pred cEEEEEecchhhhhhc--------C-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcC------C
Q 037340 324 SKIVVTTRNLGVAESM--------G-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCR------G 388 (1276)
Q Consensus 324 s~ilvTtr~~~v~~~~--------~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 388 (1276)
..+|+||+...+...+ . ....+.+.+++.++++++|...+..... ...--.+.+..|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCC
Confidence 5688888765532111 1 1123899999999999999755321110 01112467788999999 9
Q ss_pred ChHHHHHHHHH-h--c---CC--CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccC--CCcee
Q 037340 389 LPLAAKTLGGL-L--R---GR--DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVP--KDYEF 458 (1276)
Q Consensus 389 ~PLai~~~~~~-l--~---~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~i 458 (1276)
.|..+..+... . . .. -+.+.+...+..... ...+.-+++.||++.+.++..++.+. .+..+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 99755544432 1 1 11 122333333322100 22344467889999999998888754 23345
Q ss_pred chHHHHHHHH--H-cCCCccccCCCCHHHHHHHHHHHHHhCCcccccCC---CCCcEEEcchH
Q 037340 459 QEEEIILLWT--A-EGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSK---DASRFVMHDLI 515 (1276)
Q Consensus 459 ~~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~---~~~~~~mHdli 515 (1276)
....+...+. + .-. . ...........+++.|++.+++..... ..++|++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMY-N---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHHHHS-C---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 5555554442 2 111 0 001123456788999999999976532 23455566554
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=5.3e-15 Score=163.93 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcce
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRK 1175 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 1175 (1276)
+++|++|++++|......+..+..+++|++|++++|. +..++.. ..+++|+.|++++|.+.+..+.. +..+++|++
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 229 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQY 229 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCE
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHH-cccCcccCE
Confidence 4455555555553322222335555555666665555 3333211 23455555555555555443322 445555555
Q ss_pred EEecCC
Q 037340 1176 LKISGG 1181 (1276)
Q Consensus 1176 L~Ls~~ 1181 (1276)
|++++|
T Consensus 230 L~l~~N 235 (285)
T 1ozn_A 230 LRLNDN 235 (285)
T ss_dssp EECCSS
T ss_pred EeccCC
Confidence 555553
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.4e-15 Score=181.39 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=153.9
Q ss_pred CCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCccccccCCCCccEEEEccCCcccccccccCCCccEEEEccCCC
Q 037340 887 GFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVTIQCLPVLSELHIDGCRRVVFSSLINFSSLKSIFLRDIAN 966 (1276)
Q Consensus 887 ~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~n~~ 966 (1276)
.+++|+.|++++| .+.+..| ..+..+++|+.|++++|.......+..+++|++|++++|.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~------------------~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~- 91 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISA------------------ADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY- 91 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCG------------------GGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-
T ss_pred cCCCccEEEeeCC-cCCCCCH------------------HHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-
Confidence 4668888888884 4553222 2455677888888888875444447778888888888875
Q ss_pred cccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcceEEEecCCCcccccccccccccCCCcccccceEEEc
Q 037340 967 QVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGCSQLLSLVTEEEHDQQQPELPCRLQFLELS 1046 (1276)
Q Consensus 967 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~~~~~~~~~~~~~~l~~~L~~L~l~ 1046 (1276)
+.+.. ..++|+.|++.++.-.... ...+++|+.|++++|. ++.
T Consensus 92 ---l~~l~--~~~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~L~~N~-l~~------------------------ 134 (487)
T 3oja_A 92 ---VQELL--VGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNK-ITM------------------------ 134 (487)
T ss_dssp ---EEEEE--ECTTCCEEECCSSCCCCEE-------ECCCSSCEEEECCSSC-CCS------------------------
T ss_pred ---CCCCC--CCCCcCEEECcCCcCCCCC-------ccccCCCCEEECCCCC-CCC------------------------
Confidence 22211 1244444444444322211 1123445555554441 110
Q ss_pred ccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCC-CCCcc
Q 037340 1047 DWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMH-NLTSL 1125 (1276)
Q Consensus 1047 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~-~l~~L 1125 (1276)
..|..+..+++|+.|++++|...+..|..+. .+++|
T Consensus 135 -------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 135 -------------------------------------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp -------------------------------------------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred -------------------------------------------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 1122233457899999999977777777775 78999
Q ss_pred ceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCC-ccCCCCCCCcCeeeccCCC
Q 037340 1126 LHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDL-VSSPRFPASLTELKISDMP 1204 (1276)
Q Consensus 1126 ~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~~~~~~~~L~~L~l~~~~ 1204 (1276)
++|++++|. ++.++....+++|+.|++++|.+.+..+. +..+++|+.|++++|...- +.....+++|+.|++++|+
T Consensus 172 ~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 172 EHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cEEecCCCc-cccccccccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 999999998 77777777889999999999999876554 7788999999999874332 2222356778888888866
Q ss_pred CC-ccccCCCCCCCCcCceecc
Q 037340 1205 SL-ERLSSIGENLTSLKFLDLD 1225 (1276)
Q Consensus 1205 ~l-~~l~~~~~~l~~L~~L~l~ 1225 (1276)
.. ..+|..+..++.|+.|+++
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 54 3566556677777777775
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=9e-15 Score=162.06 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=43.8
Q ss_pred CceEEEEecCccccccC-cccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhh-ccccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~ 674 (1276)
+.|++|+|++|.++.+| ..|..+++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 35555555555555554 3455555555555555555544 444555555555555555324433 34455555555555
Q ss_pred ccccc
Q 037340 675 NFNVL 679 (1276)
Q Consensus 675 l~~~~ 679 (1276)
+++|.
T Consensus 112 l~~n~ 116 (285)
T 1ozn_A 112 LDRCG 116 (285)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 55554
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=3.1e-14 Score=163.41 Aligned_cols=293 Identities=13% Similarity=0.112 Sum_probs=179.7
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC------CH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF------DV 257 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~ 257 (1276)
....|+||+++++++.+++.. + +++.|+|++|+|||||++++++. . + .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 345799999999999999843 1 68999999999999999999873 2 2 6777765432 55
Q ss_pred HHHHHHHHHHhhc---------------c-c-CCCCCcHHHHHHHHHHHhcC-CcceEeecCCCccCH-------hhHhh
Q 037340 258 SRVTKSILRSIAD---------------D-Q-IKDDDDLNSLQVKLKKQLSG-KKILLVLDDVWNENY-------ENWSI 312 (1276)
Q Consensus 258 ~~~~~~i~~~l~~---------------~-~-~~~~~~~~~~~~~l~~~l~~-kr~LlvlDdv~~~~~-------~~~~~ 312 (1276)
..+...+.+.+.. . . ........++.+.+.+..+. ++++||+||++.-+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665532 0 0 00123455666666665543 389999999965321 22333
Q ss_pred hccCCCCCCCCcEEEEEecchhhhhhc-----------C-CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHH
Q 037340 313 LSRPFGVGAPGSKIVVTTRNLGVAESM-----------G-VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGE 380 (1276)
Q Consensus 313 ~~~~l~~~~~gs~ilvTtr~~~v~~~~-----------~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (1276)
+...... .++.++|+|++...+...+ + ....+.+.+|+.+|+.+++.+.....+. . .-.+.+.
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEIE 229 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHH
Confidence 3222211 2477899998875432111 1 1236899999999999999865322111 1 1135778
Q ss_pred HHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhcccccccccchhHHHHHhHhcC---cHHHHHHHhhhcccCCCce
Q 037340 381 KIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLREESCNILPALRVSYHFL---APQLKQCFAYCSLVPKDYE 457 (1276)
Q Consensus 381 ~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~~ 457 (1276)
.|++.++|+|+++..++..+....+...+...+. ..+...+.-.+..+ ++..+..+..+|. + .
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTL----------EVAKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHH----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHH----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 8999999999999999876432222222211110 01111122222233 7888999998887 2 2
Q ss_pred echHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHHHhCCcccccCCCCCcEEE-cchHHHHHH
Q 037340 458 FQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSKDASRFVM-HDLINDLAR 520 (1276)
Q Consensus 458 i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~m-Hdli~~~~~ 520 (1276)
++...+.....+. . ++. .......+++.|++.+++.... ..|.+ |++++.+.+
T Consensus 296 ~~~~~l~~~~~~~-~-----~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVK-G-----TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHT-T-----CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHH-h-----CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 3445554433221 1 011 1345778999999999998753 45655 778887754
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=7.8e-16 Score=172.74 Aligned_cols=149 Identities=19% Similarity=0.137 Sum_probs=81.4
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCccc---CCC--CCCCCCceeEeecCCCCcc--ccccccCCCC
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSF---PED--GFPTNLQSLEFEDLKISKP--LFQWGLNRFN 1171 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l---~~~--~~~~~L~~L~l~~n~~~~~--~~~~~l~~l~ 1171 (1276)
++|++|++++|...+..|..+..+++|++|++++|...+.+ +.. +.+++|++|++++|.+.+. .+...+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 46666666666554444456666666666666666633221 111 3456666666666666531 1212234556
Q ss_pred CcceEEecCCCCCCcc---CCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCCcccccccccc
Q 037340 1172 SLRKLKISGGFPDLVS---SPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIID 1248 (1276)
Q Consensus 1172 ~L~~L~Ls~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~ 1248 (1276)
+|++|++++|...-.. ....+++|++|++++|. ++.+|..+. ++|++|++++| .++.+|...-.++|+.|+++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLK 304 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECT
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEecc
Confidence 6666666665332211 11134666667776643 456665444 66777777766 35555553334566677776
Q ss_pred CCh
Q 037340 1249 ECP 1251 (1276)
Q Consensus 1249 ~cp 1251 (1276)
+++
T Consensus 305 ~N~ 307 (312)
T 1wwl_A 305 GNP 307 (312)
T ss_dssp TCT
T ss_pred CCC
Confidence 665
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2e-14 Score=158.72 Aligned_cols=100 Identities=21% Similarity=0.187 Sum_probs=71.0
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
+.++++++.++++++.++.+|..+. .+|++|+|++|.+..+ |..+.++++|++|++++| .+..+|.. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCE
Confidence 4566777778888877777776664 5778888888877766 456777888888888877 56666553 67778888
Q ss_pred eecccccccccCccccCCccccccCC
Q 037340 673 LINFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 673 L~l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
|++++|. +..+|..+..+++|++|+
T Consensus 82 L~Ls~N~-l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 82 LDLSHNQ-LQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp EECCSSC-CSSCCCCTTTCTTCCEEE
T ss_pred EECCCCc-CCcCchhhccCCCCCEEE
Confidence 8887776 666766666666555553
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=4.9e-15 Score=166.25 Aligned_cols=200 Identities=18% Similarity=0.166 Sum_probs=120.7
Q ss_pred CCCceEEEEecCcccc-ccCccc--ccccccceeeccCCcccccchhhhcc-----ccccEEecCCccchhhhc-cccCC
Q 037340 596 NLPRLRVFSLRGYCIS-KLPNEI--GNLKHLRFLNLSGTSIQFLPDSINSL-----YNLYTILLEDCYWLKKLC-QDMGN 666 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp-~~i~~ 666 (1276)
.+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++|. +..+| ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence 5778888888888877 567665 78888888888888888777777777 788888888884 44444 67888
Q ss_pred ccccceeeccccccccc--Ccccc--CCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhc
Q 037340 667 LTKLHHLINFNVLSLKE--MPKGF--GKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQL 742 (1276)
Q Consensus 667 L~~L~~L~l~~~~~l~~--lp~~i--~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l 742 (1276)
+++|++|++++|..... +|..+ +.+++|++|++..+. +.. ........+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~------l~~---------------------~~~~~~~~~ 224 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG------MET---------------------PSGVCSALA 224 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC------CCC---------------------HHHHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc------Ccc---------------------hHHHHHHHH
Confidence 88888888888762222 23333 666666666443221 100 001111222
Q ss_pred CCCCCcCceEEEecCCCccccCCCchhhHHhh-hccCCCCCCccEEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCC
Q 037340 743 NSKVNLKALLLEWSARPRRVCNLNQSEFQTCV-LSILKPNQALQELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCT 821 (1276)
Q Consensus 743 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 821 (1276)
..+++|+.|+++.+... ... ...+..+++|+.|+++++....+|.++. ++|+.|++++|.+.+
T Consensus 225 ~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLR------------DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDR 288 (312)
T ss_dssp HTTCCCSEEECTTSCCC------------SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCS
T ss_pred hcCCCCCEEECCCCcCC------------cccchhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCC
Confidence 34455666666554431 000 1223334566666666666666665542 566666666666544
Q ss_pred CCCCCCCCCCcceeeecCC
Q 037340 822 SLPPVGQLLFLKHLEISGM 840 (1276)
Q Consensus 822 ~l~~l~~l~~L~~L~L~~~ 840 (1276)
. |.++.+++|+.|++++|
T Consensus 289 ~-p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 289 N-PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp C-CCTTTSCEEEEEECTTC
T ss_pred C-hhHhhCCCCCEEeccCC
Confidence 3 44566666666666655
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=1.5e-14 Score=155.39 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=68.7
Q ss_pred ceEEEEecCccccccCc-ccccccccceeeccCCc-ccccch-hhhccccccEEecCCccchhhhc-cccCCccccceee
Q 037340 599 RLRVFSLRGYCISKLPN-EIGNLKHLRFLNLSGTS-IQFLPD-SINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLI 674 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~ 674 (1276)
.|++|++++|.++.+|. .|.++++|++|++++|. ++.+|. .+.++++|++|++++|..+..+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888887764 67788888888888886 777765 57788888888888722566665 3567788888888
Q ss_pred cccccccccCccccCCccccc
Q 037340 675 NFNVLSLKEMPKGFGKLTCLL 695 (1276)
Q Consensus 675 l~~~~~l~~lp~~i~~L~~L~ 695 (1276)
+++|. +..+|. ++.+++|+
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTD 130 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCC
T ss_pred CCCCC-Cccccc-cccccccc
Confidence 88876 666664 54444444
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=3e-15 Score=178.52 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=75.2
Q ss_pred cCCCCceEEEEecCccccccC-cccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 594 LLNLPRLRVFSLRGYCISKLP-NEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
...+++|++|+|++|.++.+| ..|+.+++|++|+|++|.++.+++ ++.+++|++|++++| .+..+|. .++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIET 103 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCE
Confidence 345558999999999998774 688999999999999999887665 889999999999998 5666654 388999
Q ss_pred eecccccccccCccccCCccccccCCc
Q 037340 673 LINFNVLSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 673 L~l~~~~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
|++++|. +..+|.. .+++|+.|++
T Consensus 104 L~L~~N~-l~~~~~~--~l~~L~~L~L 127 (487)
T 3oja_A 104 LHAANNN-ISRVSCS--RGQGKKNIYL 127 (487)
T ss_dssp EECCSSC-CCCEEEC--CCSSCEEEEC
T ss_pred EECcCCc-CCCCCcc--ccCCCCEEEC
Confidence 9999887 6666542 3455555543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=4.9e-14 Score=151.38 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=92.7
Q ss_pred CCCeeEEEEeecCCCCccc-ccCCCCCccceeeeccCCCCcccCCCCCCCCCc---eeEeecC-CCCccccccccCCCCC
Q 037340 1098 STKLTELMIWSCENLKALP-NSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQ---SLEFEDL-KISKPLFQWGLNRFNS 1172 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~---~L~l~~n-~~~~~~~~~~l~~l~~ 1172 (1276)
+++|++|++++|..++.+| ..+.++++|++|++++|. ++.+|..+.+++|+ .|++++| .+.+..+. .+.++++
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~ 156 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCN 156 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBS
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcc-cccchhc
Confidence 4566666666622333333 345566666666666665 55555544455555 6666666 44433322 3566677
Q ss_pred cc-eEEecCCCCCCccCC-CCCCCcCeeeccCCCCCccccC-CCCCC-CCcCceeccCCCCCcccCCCCCcccccccccc
Q 037340 1173 LR-KLKISGGFPDLVSSP-RFPASLTELKISDMPSLERLSS-IGENL-TSLKFLDLDNCPKLKYFSKQGLPKSLLRLIID 1248 (1276)
Q Consensus 1173 L~-~L~Ls~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~ 1248 (1276)
|+ .|++++|........ -..++|+.|++++|..++.+|. .+..+ ++|++|++++| .++.+|.. .+++|+.|++.
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECT
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeecc
Confidence 77 777766533311111 1225788888888766777764 45778 89999999987 47788876 45689999998
Q ss_pred CChhH
Q 037340 1249 ECPLI 1253 (1276)
Q Consensus 1249 ~cp~l 1253 (1276)
+|+.|
T Consensus 235 ~~~~l 239 (239)
T 2xwt_C 235 NTWTL 239 (239)
T ss_dssp TC---
T ss_pred CccCC
Confidence 88754
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=1.4e-14 Score=158.78 Aligned_cols=99 Identities=27% Similarity=0.391 Sum_probs=71.0
Q ss_pred CCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhcc-ccCCcccccee
Q 037340 595 LNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHL 673 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L 673 (1276)
..+++|+.|++++|.++.++ .+..+++|++|++++|.+..+| .++++++|++|++++| .+..+|. .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEE
Confidence 34567788888888877765 4778888888888888887764 6788888888888888 4555544 36788888888
Q ss_pred ecccccccccCccc-cCCccccccC
Q 037340 674 INFNVLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~-i~~L~~L~~L 697 (1276)
++++|. +..+|.. ++.+++|++|
T Consensus 115 ~L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 115 VLVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-CCccCHHHhccCCCCCEE
Confidence 888877 6665543 4555555544
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=4.1e-14 Score=155.08 Aligned_cols=94 Identities=23% Similarity=0.343 Sum_probs=57.0
Q ss_pred eEEEEecCccccccCcccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhccc-cCCccccceeeccc
Q 037340 600 LRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFN 677 (1276)
Q Consensus 600 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~ 677 (1276)
.+.++++++.++.+|..+. .+|++|+|++|.+..+|. .+.++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4566667666666665554 466777777777666654 4666777777777766 45555544 35667777777766
Q ss_pred ccccccCccc-cCCccccccC
Q 037340 678 VLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L 697 (1276)
|. +..+|.. +..+++|++|
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEE
T ss_pred Cc-CCcCCHhHcccccCCCEE
Confidence 65 5555433 3444444444
No 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=4e-13 Score=154.67 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=172.4
Q ss_pred cCCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC-----CCHH
Q 037340 184 NEAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED-----FDVS 258 (1276)
Q Consensus 184 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~ 258 (1276)
....|+||+++++++.+ +. . +++.|+|++|+|||||++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34579999999999999 72 1 69999999999999999999873 322 3578887643 3445
Q ss_pred HHHHHHHHHhhc-------------c-----cCC----------CCCcHHHHHHHHHHHhcCCcceEeecCCCccCH---
Q 037340 259 RVTKSILRSIAD-------------D-----QIK----------DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY--- 307 (1276)
Q Consensus 259 ~~~~~i~~~l~~-------------~-----~~~----------~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--- 307 (1276)
..+..+.+.+.. . ... .......+.+.+.+.-. ++++||+||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444321 0 000 12234445555544322 489999999955221
Q ss_pred hhHhhhccCCCCCCCCcEEEEEecchhhhhh----------cC--CCCceecCCCChhhHHHhhhhcccCCCCCCCCcch
Q 037340 308 ENWSILSRPFGVGAPGSKIVVTTRNLGVAES----------MG--VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSL 375 (1276)
Q Consensus 308 ~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~----------~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~ 375 (1276)
.+|..+...+.....+.++|+|++....... .. ....+.+.+|+.+|+.+++.+.....+. . .++.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~-~~~~ 232 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-D-FKDY 232 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-C-CCCH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-C-CCcH
Confidence 1222222222111246789999997653221 11 1246889999999999999875321111 1 1111
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhcCCCChhHHHHHHhhhcccccccccchhHHHH-HhH--hcCcHHHHHHHhhhccc
Q 037340 376 KEVGEKIAMKCRGLPLAAKTLGGLLRGRDDPRDWEFVLNTDIWNLREESCNILPALR-VSY--HFLAPQLKQCFAYCSLV 452 (1276)
Q Consensus 376 ~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cf~~~s~f 452 (1276)
..|++.++|+|+++..++..+....+...|...+-.. ....+...+. +.+ ..+|+..+..+..+|+
T Consensus 233 ----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~- 301 (357)
T 2fna_A 233 ----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSK- 301 (357)
T ss_dssp ----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-
T ss_pred ----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc-
Confidence 7899999999999999988764333333332211000 0000111122 111 1688999999999998
Q ss_pred CCCceechHHHHHHHH-HcCCCccccCCCCHHHHHHHHHHHHHhCCcccccCCCCCcEE-EcchHHHHH
Q 037340 453 PKDYEFQEEEIILLWT-AEGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSSKDASRFV-MHDLINDLA 519 (1276)
Q Consensus 453 p~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~~-mHdli~~~~ 519 (1276)
+. +...+....- ..|. .........+++.|++.+++.... ..|+ .|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 3444432210 1121 011345678899999999998753 4566 477888764
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=8.7e-14 Score=152.53 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=77.1
Q ss_pred CCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1096 LPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1096 ~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
..+++|++|++++|...+..|..+..+++|++|++++|. ++.++.. +.+++|+.|++++|.+.+..+.. +..+++|
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L 207 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSL 207 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTC
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCHHH-HhCCcCC
Confidence 445678888888885544444556778888888888887 6666653 45678888888888877655543 6777888
Q ss_pred ceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCC
Q 037340 1174 RKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTS 1218 (1276)
Q Consensus 1174 ~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 1218 (1276)
++|++++|. +...+++|+.|+++.|.....+|..++.+..
T Consensus 208 ~~L~l~~N~-----~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 208 QYIWLHDNP-----WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CEEECCSSC-----BCCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CEEEccCCC-----ccccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888887752 1123456777777776666667755554443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=2.5e-14 Score=159.81 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=64.0
Q ss_pred CCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecc
Q 037340 597 LPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINF 676 (1276)
Q Consensus 597 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~ 676 (1276)
+++|++|++++|.++.+| .+..+++|++|+|++|.+..+|. +.++++|++|++++| .+..+| .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECC
Confidence 456677777777777665 56677777777777777776666 777777777777776 455554 46677777777777
Q ss_pred cccccccCccccCCccccccCCc
Q 037340 677 NVLSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 677 ~~~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
+|. +..+|. ++.+++|+.|++
T Consensus 116 ~n~-l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 116 STQ-ITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEEC
T ss_pred CCC-CCCchh-hcCCCCCCEEEC
Confidence 766 555543 555555555543
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=3.5e-14 Score=156.45 Aligned_cols=54 Identities=9% Similarity=-0.139 Sum_probs=37.4
Q ss_pred EEEEeccCCCCCCccCCCCCCCceeEEEEccCCCCCCCCC-CCCCCCcceeeecCCC
Q 037340 786 ELTILGYGGTKFPVWLGDPSFSKLVLLRVLSCGMCTSLPP-VGQLLFLKHLEISGMD 841 (1276)
Q Consensus 786 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~ 841 (1276)
.|+++++....+|.... ...+|+.|++++|.+....+. ++.+++|+.|++++|+
T Consensus 181 ~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 56677776666665544 244788888888886654443 6778888888888774
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=2.6e-13 Score=149.83 Aligned_cols=89 Identities=18% Similarity=0.159 Sum_probs=49.8
Q ss_pred cCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccC
Q 037340 1091 FPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLN 1168 (1276)
Q Consensus 1091 ~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~ 1168 (1276)
+|..+..+++|++|++++|......|..+.++++|++|++++|. ++.++.. ..+++|+.|++++|.+....+. .+.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~ 169 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAG-LLN 169 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCTT-TTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCHH-Hhc
Confidence 34444445666666666664443334556666666666666665 5555543 2345666666666666543332 245
Q ss_pred CCCCcceEEecCC
Q 037340 1169 RFNSLRKLKISGG 1181 (1276)
Q Consensus 1169 ~l~~L~~L~Ls~~ 1181 (1276)
.+++|+.|++++|
T Consensus 170 ~l~~L~~L~L~~N 182 (290)
T 1p9a_G 170 GLENLDTLLLQEN 182 (290)
T ss_dssp TCTTCCEEECCSS
T ss_pred CcCCCCEEECCCC
Confidence 5555555555554
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=1.6e-13 Score=156.58 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=56.3
Q ss_pred EEEecCccccccCcccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhcc-ccCCccccceeeccccc
Q 037340 602 VFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 602 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 679 (1276)
+++.++++++++|..+ ..++++|+|++|+|+.+|. .|.+|++|++|+|++|...+.+|. .|.+|++|+++...++.
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4556666666666555 2466666676666666664 366666677777766644444543 35566666654333322
Q ss_pred ccccCcc-ccCCccccccCCceEe
Q 037340 680 SLKEMPK-GFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 680 ~l~~lp~-~i~~L~~L~~L~~~~~ 702 (1276)
.+..+|. .++.+++|+.|++..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT 114 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE
T ss_pred cccccCchhhhhcccccccccccc
Confidence 2555543 3556666665554443
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=1.2e-12 Score=149.45 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=51.8
Q ss_pred CccEEEEccCCcccc--cccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcc
Q 037340 933 VLSELHIDGCRRVVF--SSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLN 1010 (1276)
Q Consensus 933 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 1010 (1276)
++++|+|++|....+ ..|.++++|++|+|++|.....++...+..++++..+...++..+..+ .+..|..+++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l---~~~~f~~l~~L~ 107 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI---NPEAFQNLPNLQ 107 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE---CTTSBCCCTTCC
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc---Cchhhhhccccc
Confidence 566667777663332 346778888888888887555455444455666665555554444332 245677888888
Q ss_pred eEEEecC
Q 037340 1011 QLQISGC 1017 (1276)
Q Consensus 1011 ~L~ls~c 1017 (1276)
.|++++|
T Consensus 108 ~L~l~~n 114 (350)
T 4ay9_X 108 YLLISNT 114 (350)
T ss_dssp EEEEEEE
T ss_pred ccccccc
Confidence 8888876
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=1e-13 Score=152.64 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=54.5
Q ss_pred CceEEEEecCccccccCc-ccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhh-ccccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLPN-EIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~ 674 (1276)
+.|++|+|++|.++.++. .|.++++|++|++++|.+..+|. .+.++++|++|++++|. +..+ |..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 356777777777766653 66677777777777777766644 56677777777777763 3333 34566677777777
Q ss_pred cccccccccC
Q 037340 675 NFNVLSLKEM 684 (1276)
Q Consensus 675 l~~~~~l~~l 684 (1276)
+++|. +..+
T Consensus 107 l~~n~-l~~~ 115 (276)
T 2z62_A 107 AVETN-LASL 115 (276)
T ss_dssp CTTSC-CCCS
T ss_pred CCCCC-cccc
Confidence 76665 4444
No 93
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.46 E-value=1.4e-12 Score=142.76 Aligned_cols=128 Identities=21% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcce
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRK 1175 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 1175 (1276)
+++|++|++++|......+..+..+++|++|++++|. ++.++.. +.+++|++|++++|.+.+..+. .+..+++|+.
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 161 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKE 161 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHh-HccCCcccce
Confidence 3455555555553333233344555555555555555 4444432 2345555555555555443332 2455556666
Q ss_pred EEecCCCCCCccC--CCCCCCcCeeeccCCCCCccccCC-CCCCCCcCceeccCCC
Q 037340 1176 LKISGGFPDLVSS--PRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1176 L~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 1228 (1276)
|++++|...-... ...+++|++|++++| .++.+|.. +..+++|+.|++++||
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 6665542221111 113456666666665 44555543 5677788888888776
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=7.2e-14 Score=156.02 Aligned_cols=192 Identities=16% Similarity=0.172 Sum_probs=144.3
Q ss_pred ccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccc
Q 037340 565 ICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLY 644 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~ 644 (1276)
..++++|+.|.+.++.. ..++.+..+++|++|+|++|.++.++. +..+++|++|+|++|.+..+| .+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i-------~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV-------TTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCC-------CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCc-------cCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 34567888888877642 123357789999999999999999987 999999999999999999886 699999
Q ss_pred cccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceEeccCCCCCchhhcccccccccee
Q 037340 645 NLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQ 724 (1276)
Q Consensus 645 ~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~ 724 (1276)
+|++|++++| .+..+|. +..+++|++|++++|. +..+|. ++.+++|+.|++..+.. ..
T Consensus 108 ~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l------~~------------ 165 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV------SD------------ 165 (308)
T ss_dssp TCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCC------CC------------
T ss_pred CCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcC------CC------------
Confidence 9999999999 5677765 8999999999999998 777664 66666666664322110 00
Q ss_pred eecccCCCCchhhhhhhcCCCCCcCceEEEecCCCccccCCCchhhHHhhhccCCCCCCccEEEEeccCCCCCCccCCCC
Q 037340 725 ISMLENVKDVGDASEAQLNSKVNLKALLLEWSARPRRVCNLNQSEFQTCVLSILKPNQALQELTILGYGGTKFPVWLGDP 804 (1276)
Q Consensus 725 i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 804 (1276)
...+..+++|+.|+++++....++.. .
T Consensus 166 --------------------------------------------------~~~l~~l~~L~~L~l~~n~l~~~~~l-~-- 192 (308)
T 1h6u_A 166 --------------------------------------------------LTPLANLSKLTTLKADDNKISDISPL-A-- 192 (308)
T ss_dssp --------------------------------------------------CGGGTTCTTCCEEECCSSCCCCCGGG-G--
T ss_pred --------------------------------------------------ChhhcCCCCCCEEECCCCccCcChhh-c--
Confidence 01133456677777777777766652 2
Q ss_pred CCCceeEEEEccCCCCCCCCCCCCCCCcceeeecCCC
Q 037340 805 SFSKLVLLRVLSCGMCTSLPPVGQLLFLKHLEISGMD 841 (1276)
Q Consensus 805 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 841 (1276)
.+++|+.|++++|.+.. ++++..+++|+.|++++|.
T Consensus 193 ~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCccCc-cccccCCCCCCEEEccCCe
Confidence 57888999998888654 3457888999999998874
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=152.03 Aligned_cols=149 Identities=18% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcc--cCC-C--CCCCCCceeEeecCCCCcccc--ccccCCCC
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVS--FPE-D--GFPTNLQSLEFEDLKISKPLF--QWGLNRFN 1171 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~--l~~-~--~~~~~L~~L~l~~n~~~~~~~--~~~l~~l~ 1171 (1276)
++|++|++++|......|..+.++++|++|++++|...+. ++. . +.+++|++|++++|.+..... ...+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 4555555555544444445555555666666665552221 111 1 234556666666665542211 11123455
Q ss_pred CcceEEecCCCCCCcc---CCC--CCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCCcccccccc
Q 037340 1172 SLRKLKISGGFPDLVS---SPR--FPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLI 1246 (1276)
Q Consensus 1172 ~L~~L~Ls~~~~~~~~---~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~ 1246 (1276)
+|++|++++|...-.. +.. .+++|++|++++| .++.+|..+. ++|++|++++| .++.+|.....++|+.|+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEE
Confidence 6666666655322210 111 2356666666664 3445665443 56666666666 355554433345666666
Q ss_pred ccCCh
Q 037340 1247 IDECP 1251 (1276)
Q Consensus 1247 i~~cp 1251 (1276)
+++++
T Consensus 301 L~~N~ 305 (310)
T 4glp_A 301 LDGNP 305 (310)
T ss_dssp CSSTT
T ss_pred CcCCC
Confidence 66654
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=1.3e-14 Score=165.45 Aligned_cols=232 Identities=16% Similarity=0.172 Sum_probs=138.2
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccc--cchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQF--LPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
+.+++|++++|.+...+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|......|..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56778888888877766667778888888888887763 6777788888888888888544466777777888888888
Q ss_pred cccccccc--CccccCCccccccCCceEeccCCCCCchhhccccccccceeeecccCCCCchhhhhhhcCCCCCcCceEE
Q 037340 676 FNVLSLKE--MPKGFGKLTCLLTLRRFVVGKDSGSSLRELRSLMHLQGTLQISMLENVKDVGDASEAQLNSKVNLKALLL 753 (1276)
Q Consensus 676 ~~~~~l~~--lp~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l 753 (1276)
++|..+.. +|..+..+++|++|+ +
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~------------------------------------------------------l 175 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELN------------------------------------------------------L 175 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEE------------------------------------------------------C
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEc------------------------------------------------------C
Confidence 87742442 343344444444443 3
Q ss_pred Eec-CCCccccCCCchhhHHhhhccCCCCC-CccEEEEeccCC----CCCCccCCCCCCCceeEEEEccCCC-CC-CCCC
Q 037340 754 EWS-ARPRRVCNLNQSEFQTCVLSILKPNQ-ALQELTILGYGG----TKFPVWLGDPSFSKLVLLRVLSCGM-CT-SLPP 825 (1276)
Q Consensus 754 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~----~~~p~~~~~~~l~~L~~L~L~~~~~-~~-~l~~ 825 (1276)
+++ .. . .......+..++ +|+.|+++++.. ..+|..+. .+++|+.|++++|.. .. .++.
T Consensus 176 ~~~~~l-------~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 176 SWCFDF-------T----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp CCCTTC-------C----HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGG
T ss_pred CCCCCc-------C----hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHH
Confidence 222 11 0 000111222344 566666665531 22333332 467888888888874 32 3444
Q ss_pred CCCCCCcceeeecCCCCceeeCCcccCCCCCCCCCCcceeeccccccccccccCCccccccCC-CCccEEEEecCCCCcC
Q 037340 826 VGQLLFLKHLEISGMDGVKSVGPEFYGDSCSVPFPSLETLRFHDMQEWEEWIPRGAGQAVEGF-PKLQMLSLVGCSELQG 904 (1276)
Q Consensus 826 l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~ 904 (1276)
++.+++|+.|++++|..+.......+ ..+++|+.|++.+| +.. . . +..+ .+|+.|++++ +.+++
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~--i~~---~-~---~~~l~~~l~~L~l~~-n~l~~ 307 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI--VPD---G-T---LQLLKEALPHLQINC-SHFTT 307 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS--SCT---T-C---HHHHHHHSTTSEESC-CCSCC
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc--cCH---H-H---HHHHHhhCcceEEec-ccCcc
Confidence 77788888888888863322111122 23788888888887 211 1 0 1112 2355556654 67887
Q ss_pred CCCCCCC
Q 037340 905 TLPERFP 911 (1276)
Q Consensus 905 ~~p~~l~ 911 (1276)
..|..+.
T Consensus 308 ~~~~~~~ 314 (336)
T 2ast_B 308 IARPTIG 314 (336)
T ss_dssp TTCSSCS
T ss_pred ccCCccc
Confidence 7776544
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=151.27 Aligned_cols=105 Identities=14% Similarity=-0.000 Sum_probs=81.4
Q ss_pred CCCceEEEEecCcccc-ccCccc--ccccccceeeccCCccccc-c----hhhhccccccEEecCCccchhhhccccCCc
Q 037340 596 NLPRLRVFSLRGYCIS-KLPNEI--GNLKHLRFLNLSGTSIQFL-P----DSINSLYNLYTILLEDCYWLKKLCQDMGNL 667 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L 667 (1276)
.++.|++|++++|.+. ..|..+ ..+.+|++|+|++|.+... | ..+..+++|++|++++|......|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466999999999987 457777 8999999999999998853 2 345679999999999995444445778999
Q ss_pred cccceeeccccccccc---Ccc--ccCCccccccCCceE
Q 037340 668 TKLHHLINFNVLSLKE---MPK--GFGKLTCLLTLRRFV 701 (1276)
Q Consensus 668 ~~L~~L~l~~~~~l~~---lp~--~i~~L~~L~~L~~~~ 701 (1276)
++|++|++++|. +.. ++. .++.+++|++|++..
T Consensus 169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred CCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCC
Confidence 999999999997 432 332 246788888886543
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=3.2e-12 Score=138.21 Aligned_cols=95 Identities=27% Similarity=0.317 Sum_probs=69.5
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhh-ccccCCccccceeecc
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKL-CQDMGNLTKLHHLINF 676 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~i~~L~~L~~L~l~ 676 (1276)
..++++++++.++.+|..+. .+|++|+|++|.+..++. .+.++++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 45678888888888887775 588889999988887754 5888888999999888 44444 4457888888888888
Q ss_pred cccccccCccc-cCCccccccC
Q 037340 677 NVLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 677 ~~~~l~~lp~~-i~~L~~L~~L 697 (1276)
+|. +..+|.. ++.+++|++|
T Consensus 92 ~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 92 NNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCc-ccccChhHhcccCCCCEE
Confidence 887 6665533 3444444444
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=5e-11 Score=138.36 Aligned_cols=289 Identities=13% Similarity=0.034 Sum_probs=180.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc--------cccEEEEEEcCCC-C
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH--------FQIKAWTCVSEDF-D 256 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------f~~~~wv~~~~~~-~ 256 (1276)
..++||+++++++.+++.... .....+.+.|+|++|+||||+|+.+++. .... ....+|+++.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCC
Confidence 679999999999998885421 1234568999999999999999999983 3222 2356788877766 8
Q ss_pred HHHHHHHHHHHhhcccC-CCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH----hh-HhhhccCCCCCCCCcEEEEEe
Q 037340 257 VSRVTKSILRSIADDQI-KDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY----EN-WSILSRPFGVGAPGSKIVVTT 330 (1276)
Q Consensus 257 ~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~----~~-~~~~~~~l~~~~~gs~ilvTt 330 (1276)
...++..++.++.+... ............+.+.+..++.+||+||++.-.. +. ...+.... .+..+|+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 88888999888844322 1233445667777788877666999999955321 11 22233222 677899999
Q ss_pred cchhhhhhc------CCCCceecCCCChhhHHHhhhhcccC-CCCCCCCcchHHHHHHHHHHcC---CChH-HHHHHHHH
Q 037340 331 RNLGVAESM------GVDPAYQLKELSNDDCLCVLTQISLG-ARDFNMHQSLKEVGEKIAMKCR---GLPL-AAKTLGGL 399 (1276)
Q Consensus 331 r~~~v~~~~------~~~~~~~l~~L~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~~ 399 (1276)
+.......+ .....+.+++++.++..+++.+.+.. -...... .+..+.|++.++ |.|- |+.++..+
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 875321111 11238999999999999999987431 1111112 245666777777 8887 44444333
Q ss_pred h--c---CCCChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccCCCceechHHHHHHHHHcCCCc
Q 037340 400 L--R---GRDDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVPKDYEFQEEEIILLWTAEGFLD 474 (1276)
Q Consensus 400 l--~---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~ 474 (1276)
. . ..-+.+++..++.... ...+..+++.|+++.+..+..++....+-.+. +.....--..| +
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~- 315 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q- 315 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-
Confidence 2 2 1224566666655431 23466778899998888777676611101111 01111111112 1
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCccccc
Q 037340 475 QEYNGRKMEDLGREFVWELHSRSLFQQS 502 (1276)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~L~~~sll~~~ 502 (1276)
..........++..|...+++...
T Consensus 316 ----~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 ----KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ----CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 111235577889999999999864
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=4.7e-14 Score=163.92 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=65.9
Q ss_pred cccCCCCcceeeccccccCCcchhhH-HHHhcCCCCceEEEEecCccccc----cCccc-------ccccccceeeccCC
Q 037340 564 SICGVKHLRTFLPMKLKYGGTFLAWS-VLQMLLNLPRLRVFSLRGYCISK----LPNEI-------GNLKHLRFLNLSGT 631 (1276)
Q Consensus 564 ~~~~~~~Lr~L~~~~~~~~~~~~~~~-~~~~l~~l~~Lr~L~L~~~~i~~----lp~~i-------~~L~~Lr~L~L~~~ 631 (1276)
.+..+++|+.|.+.++..... ... +...+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHhcCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344566677777766532110 011 12226677777777777765442 23333 56677777777777
Q ss_pred cccc-----cchhhhccccccEEecCCccchh----hhccccCCc---------cccceeeccccc
Q 037340 632 SIQF-----LPDSINSLYNLYTILLEDCYWLK----KLCQDMGNL---------TKLHHLINFNVL 679 (1276)
Q Consensus 632 ~i~~-----lp~~i~~L~~L~~L~l~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~ 679 (1276)
.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 7664 56667777777777777774321 223333333 677777777665
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=7.6e-13 Score=146.21 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=72.7
Q ss_pred CCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeec
Q 037340 596 NLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLIN 675 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l 675 (1276)
.+++|++|++++|.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 4567888888888888876 47888888888888888888876 888888888888888 5666654 888888888888
Q ss_pred ccccccccCccccCCccccccCC
Q 037340 676 FNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 676 ~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
++|. +..++ .++.+++|+.|+
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEE
T ss_pred CCCc-CCCCh-hhcCCCCCCEEE
Confidence 8886 65553 355555555443
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=4.7e-11 Score=138.93 Aligned_cols=294 Identities=15% Similarity=0.038 Sum_probs=181.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc------cccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH------FQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~wv~~~~~~~~~~ 259 (1276)
..++||+.+++++..++...- .....+.+.|+|++|+||||+|+.+++. .... -...+|+++....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 679999999999999985431 1234568899999999999999999973 3221 12456788778788889
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHh--cCCcceEeecCCCccCH-----hhHhhhccCCCCC--CCCcEEEEEe
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQL--SGKKILLVLDDVWNENY-----ENWSILSRPFGVG--APGSKIVVTT 330 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlvlDdv~~~~~-----~~~~~~~~~l~~~--~~gs~ilvTt 330 (1276)
++..++.+++................+.+.+ .+++.+||+||++.-.. +....+....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 9999999987654334445666666777776 35688999999965321 1122222222111 3466788888
Q ss_pred cchhhhhhc------C-CCCceecCCCChhhHHHhhhhcccCC-CCCCCCcchHHHHHHHHHHcC---CChH-HHHHHHH
Q 037340 331 RNLGVAESM------G-VDPAYQLKELSNDDCLCVLTQISLGA-RDFNMHQSLKEVGEKIAMKCR---GLPL-AAKTLGG 398 (1276)
Q Consensus 331 r~~~v~~~~------~-~~~~~~l~~L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~PL-ai~~~~~ 398 (1276)
+.......+ . ....+.+++++.++..+++.+.+... ...... .+..+.|++.++ |.|- |+.++..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 765322111 1 11478999999999999998764310 011112 235566777787 9993 4443333
Q ss_pred Hhc-----CC--CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhc-ccCCCceechHHHHHHHHH-
Q 037340 399 LLR-----GR--DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCS-LVPKDYEFQEEEIILLWTA- 469 (1276)
Q Consensus 399 ~l~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w~a- 469 (1276)
+.. +. -+.+.+..++.... ...+.-++..|+.+.+..+..++ ++.....+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 221 11 23555655554321 22456678899998888776665 4432234555533333211
Q ss_pred ---cCCCccccCCCCHHHHHHHHHHHHHhCCccccc
Q 037340 470 ---EGFLDQEYNGRKMEDLGREFVWELHSRSLFQQS 502 (1276)
Q Consensus 470 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 502 (1276)
.| + .......+..+++.|...|++...
T Consensus 322 ~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22 1 112245678899999999999874
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=7.5e-14 Score=159.07 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=40.2
Q ss_pred CCccEEEEccCC-cccccccccCCCccEEEEccCCCcccchhhhccCCCCCceEEEecCCCCccccccccccCCCCCCcc
Q 037340 932 PVLSELHIDGCR-RVVFSSLINFSSLKSIFLRDIANQVVLAGLFEQGLPKLENLQICYVHEQTYLWQSETRLLHDISSLN 1010 (1276)
Q Consensus 932 ~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 1010 (1276)
++++.|++++|. ......+..+++|++|++++|.............+++|+.|++.+|..... .+..+..+++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~ 145 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLV 145 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH----HHHHHTTCTTCS
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH----HHHHHhcCCCCC
Confidence 455555555554 112223445566666666666421110111223455555555555532211 133445566666
Q ss_pred eEEEecCCCc
Q 037340 1011 QLQISGCSQL 1020 (1276)
Q Consensus 1011 ~L~ls~c~~l 1020 (1276)
+|++++|..+
T Consensus 146 ~L~L~~~~~l 155 (336)
T 2ast_B 146 RLNLSGCSGF 155 (336)
T ss_dssp EEECTTCBSC
T ss_pred EEECCCCCCC
Confidence 6666666433
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=1.7e-12 Score=134.27 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=107.8
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEE
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLK 1177 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 1177 (1276)
+++|+.|++++| .+..+| .+..+++|++|++++|. +..++....+++|++|++++|.+.+..+.. +..+++|++|+
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEE
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEE
Confidence 567888888887 444666 67788888888888884 666666666788888888888887655543 77788888888
Q ss_pred ecCCCCCC--ccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcccCCCCCccccccccccCCh
Q 037340 1178 ISGGFPDL--VSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKYFSKQGLPKSLLRLIIDECP 1251 (1276)
Q Consensus 1178 Ls~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~l~~~L~~L~i~~cp 1251 (1276)
+++|...- ......+++|++|++++|..++.+| .+..+++|++|++++|+ ++.++...-.++|+.|++++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 88874432 2222356788888888877677787 67888889999998884 6666643344678888888875
No 105
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=7.8e-11 Score=137.09 Aligned_cols=298 Identities=14% Similarity=0.047 Sum_probs=185.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc-ccEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF-QIKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i 264 (1276)
..++||+.+++++.+++........+..+.+.|+|++|+||||+|+.+++. ..... ...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 579999999999999986521101122348999999999999999999873 33221 245677777777888899999
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccCHhhHhhhccCCCCCC----CCcEEEEEecchhhhhh
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNENYENWSILSRPFGVGA----PGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~----~gs~ilvTtr~~~v~~~ 338 (1276)
+..++............+.+.+...+. +++.+||+||++.-+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 998865433233455666666666664 568899999997655555556555443211 46678888887644332
Q ss_pred cC-------CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHc---------CCChHHHHHHHH-Hhc
Q 037340 339 MG-------VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKC---------RGLPLAAKTLGG-LLR 401 (1276)
Q Consensus 339 ~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLai~~~~~-~l~ 401 (1276)
+. ....+.+.+++.++..+++...+..... ...--.+..+.|++.+ +|.|-.+..+.. +..
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 21 1236999999999999999876532110 0111246777888999 788754433322 221
Q ss_pred -----CC--CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccC---CCceechHHHHHHHHH--
Q 037340 402 -----GR--DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVP---KDYEFQEEEIILLWTA-- 469 (1276)
Q Consensus 402 -----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a-- 469 (1276)
+. -+.+....+..... ...+.-.+..|+.+.+.++..++.+. .+..+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 12222222222211 11223446788888888887777654 2224566666555433
Q ss_pred --cCCCccccCCCCHHHHHHHHHHHHHhCCcccccC
Q 037340 470 --EGFLDQEYNGRKMEDLGREFVWELHSRSLFQQSS 503 (1276)
Q Consensus 470 --~g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~~ 503 (1276)
.|.. .........++.+|...+++....
T Consensus 323 ~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 111345778999999999998753
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.32 E-value=1.2e-11 Score=133.79 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=66.9
Q ss_pred CCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCC
Q 037340 1095 GLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNS 1172 (1276)
Q Consensus 1095 ~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~ 1172 (1276)
+..+++|++|++++|...+..|..+..+++|++|++++|. ++.++.. ..+++|++|++++|.+.+..+.. +..+++
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~ 132 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTK 132 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhH-hccCCc
Confidence 4445566666666664444444445556666666666655 4444432 23456666666666555443322 455566
Q ss_pred cceEEecCCCCCCccC--CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCC
Q 037340 1173 LRKLKISGGFPDLVSS--PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1173 L~~L~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1228 (1276)
|++|++++|...-... ...+++|++|++++|. ++.+|. .+..+++|++|++++|+
T Consensus 133 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 6666666553221111 1134556666666543 333332 34555566666666554
No 107
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=3.7e-11 Score=139.80 Aligned_cols=296 Identities=14% Similarity=0.074 Sum_probs=176.6
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc---ccEEEEEEcCCCCHHHHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKAWTCVSEDFDVSRVT 261 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~~~~~~~~~ 261 (1276)
+..|+||+.+++.+.+++.... .....+.+.|+|++|+||||||+.+++ .....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 3679999999999999886421 123456899999999999999999998 343332 246777777766777888
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHHhc--CCcceEeecCCCccC----HhhHhhhccCCCC-CCCCcEEEEEecchh
Q 037340 262 KSILRSIADDQIKDDDDLNSLQVKLKKQLS--GKKILLVLDDVWNEN----YENWSILSRPFGV-GAPGSKIVVTTRNLG 334 (1276)
Q Consensus 262 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlvlDdv~~~~----~~~~~~~~~~l~~-~~~gs~ilvTtr~~~ 334 (1276)
..++.+++................+.+.+. +++.+||+||++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888887755433233345555666666664 458999999995521 2223333222211 234567788888654
Q ss_pred hhhhcC-------CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcC---CChHH-HHHHHHHhc--
Q 037340 335 VAESMG-------VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCR---GLPLA-AKTLGGLLR-- 401 (1276)
Q Consensus 335 v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLa-i~~~~~~l~-- 401 (1276)
....+. ....+.+++++.++..+++.+.+..... ...-..++.+.|++.++ |.|.. +.++.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 332221 1247999999999999999875421110 11122455667777777 99984 443333221
Q ss_pred ---C--CCChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhcccCC-C-ceechHHHHHHHH--H--c
Q 037340 402 ---G--RDDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCSLVPK-D-YEFQEEEIILLWT--A--E 470 (1276)
Q Consensus 402 ---~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w~--a--~ 470 (1276)
. .-+.+.+..++.... ...+.-.+..+|.+.+..+..++..-+ + ..+....+.+... + .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 123445554443321 234566778899888877766664221 2 1233433322221 1 1
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHhCCccccc
Q 037340 471 GFLDQEYNGRKMEDLGREFVWELHSRSLFQQS 502 (1276)
Q Consensus 471 g~i~~~~~~~~~~~~~~~~~~~L~~~sll~~~ 502 (1276)
|. . .........+++.|...+++...
T Consensus 323 g~-~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 GV-E-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp TC-C-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CC-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 21 1 11134567889999999999763
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=1.8e-12 Score=157.20 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceee
Q 037340 595 LNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLI 674 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 674 (1276)
..+++|+.|++++|.+..+| .|+.|++|++|+|++|.+..+|. +..+++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 34566777788888877776 57778888888888888877766 778888888888887 555554 577788888888
Q ss_pred cccccccccCccccCCccccccCC
Q 037340 675 NFNVLSLKEMPKGFGKLTCLLTLR 698 (1276)
Q Consensus 675 l~~~~~l~~lp~~i~~L~~L~~L~ 698 (1276)
+++|. +..+| .++.+++|+.|+
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEE
T ss_pred ecCCC-CCCCc-cccCCCccCEEE
Confidence 88776 55543 355555555554
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=1.3e-13 Score=160.15 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred CCCCeeEEEEeecCCC----CcccccCCCCCccceeeeccCCCCccc-----CCC---CCCCCCceeEeecCCCCc----
Q 037340 1097 PSTKLTELMIWSCENL----KALPNSMHNLTSLLHLEIGRCPSLVSF-----PED---GFPTNLQSLEFEDLKISK---- 1160 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l----~~lp~~l~~l~~L~~L~l~~c~~l~~l-----~~~---~~~~~L~~L~l~~n~~~~---- 1160 (1276)
.+++|++|+|++|... ..+|..+..+++|++|++++|. ++.. +.. +.+++|+.|+|++|.+.+
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 3467888888888653 5567777788888888888887 4432 221 236778888888888776
Q ss_pred cccccccCCCCCcceEEecCC
Q 037340 1161 PLFQWGLNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1161 ~~~~~~l~~l~~L~~L~Ls~~ 1181 (1276)
.++.....++++|++|++++|
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTS
T ss_pred HHHHHHHhcCCCceEEEccCC
Confidence 244432245667777777664
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=1.8e-11 Score=146.55 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=68.3
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecccc
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNV 678 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 678 (1276)
+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 68888888888888887664 78888888888888888 45788888888888 5666777 655 8888888888
Q ss_pred cccccCccccCCccccccCCc
Q 037340 679 LSLKEMPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 679 ~~l~~lp~~i~~L~~L~~L~~ 699 (1276)
. +..+|. .+++|+.|++
T Consensus 131 ~-l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINA 147 (571)
T ss_dssp C-CSCCCC---CCTTCCEEEC
T ss_pred c-CCCCCC---cCccccEEeC
Confidence 7 777776 4566666644
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=3.6e-11 Score=143.86 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=63.7
Q ss_pred CeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEec
Q 037340 1100 KLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKIS 1179 (1276)
Q Consensus 1100 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls 1179 (1276)
+|++|++++|... .+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|.+.+ +|. +. ++|+.|+|+
T Consensus 121 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLT-MLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECC
T ss_pred CCCEEECCCCcCC-CCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECc
Confidence 4555555555322 2444 34555555555555 444544 34555555555555554 222 22 555555555
Q ss_pred CCCCCCccCCCCCCCc-------CeeeccCCCCCccccCCCCCCCCcCceeccCCCCCc
Q 037340 1180 GGFPDLVSSPRFPASL-------TELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLK 1231 (1276)
Q Consensus 1180 ~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 1231 (1276)
+|... .+|.+..+| +.|++++| .++.+|..+..+++|+.|++++|+.-.
T Consensus 189 ~N~L~--~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 189 TNLLE--SLPAVPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp SSCCS--SCCCCC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCC--chhhHHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 54322 222222355 78888874 566788777778888888888886433
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=2.2e-12 Score=139.97 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=47.7
Q ss_pred ceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccceeecccc
Q 037340 599 RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNV 678 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~ 678 (1276)
.+..++++++.++.++ .+..+.+|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC
Confidence 3444555556665555 4556666666666666666665 4666666666666666 4444544 566666666666665
Q ss_pred cccccCc
Q 037340 679 LSLKEMP 685 (1276)
Q Consensus 679 ~~l~~lp 685 (1276)
. +..+|
T Consensus 96 ~-l~~l~ 101 (263)
T 1xeu_A 96 R-LKNLN 101 (263)
T ss_dssp C-CSCCT
T ss_pred c-cCCcC
Confidence 5 44443
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=3.5e-13 Score=154.65 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred cCCCCceEEEEecCccccccC-----ccccccc-ccceeeccCCccccc-chhhhcc-----ccccEEecCCccchhhhc
Q 037340 594 LLNLPRLRVFSLRGYCISKLP-----NEIGNLK-HLRFLNLSGTSIQFL-PDSINSL-----YNLYTILLEDCYWLKKLC 661 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~~l~~lp 661 (1276)
+...++|++|+|++|.++..+ ..+..++ +|++|+|++|.|... +..+..+ ++|++|++++|......+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 455555888888888777664 5566777 788888888877755 5556655 778888888774222222
Q ss_pred cc----cCCc-cccceeeccccccccc
Q 037340 662 QD----MGNL-TKLHHLINFNVLSLKE 683 (1276)
Q Consensus 662 ~~----i~~L-~~L~~L~l~~~~~l~~ 683 (1276)
.. +..+ ++|++|++++|. +..
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 123 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWND-FSS 123 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGG
T ss_pred HHHHHHHHhCCCCccEEECcCCc-CCc
Confidence 32 3333 677777777776 443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=1.5e-11 Score=127.28 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=116.2
Q ss_pred ccceEEEEEecCCCcccccccccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccc-cCcccccccc
Q 037340 544 QSLRHFSYIRGGYDGKNRLESICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISK-LPNEIGNLKH 622 (1276)
Q Consensus 544 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~ 622 (1276)
..++++.+..+... .+..+..+++|+.|.+.++. ...++.+..+++|++|++++|.++. .|..|+.+++
T Consensus 44 ~~L~~L~l~~n~i~---~l~~l~~l~~L~~L~l~~n~-------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 44 NSLTYITLANINVT---DLTGIEYAHNIKDLTINNIH-------ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HTCCEEEEESSCCS---CCTTGGGCTTCSEEEEESCC-------CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred CCccEEeccCCCcc---ChHHHhcCCCCCEEEccCCC-------CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 45677777765433 33467788899999988763 2234468889999999999999885 5788999999
Q ss_pred cceeeccCCcccc-cchhhhccccccEEecCCccchhhhccccCCccccceeecccccccccCccccCCccccccCCceE
Q 037340 623 LRFLNLSGTSIQF-LPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKEMPKGFGKLTCLLTLRRFV 701 (1276)
Q Consensus 623 Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~ 701 (1276)
|++|++++|.++. .|..++++++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|+.|++..
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECB
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeC
Confidence 9999999999985 67889999999999999995577777 68899999999999988 77776 678888888876654
Q ss_pred e
Q 037340 702 V 702 (1276)
Q Consensus 702 ~ 702 (1276)
+
T Consensus 191 N 191 (197)
T 4ezg_A 191 Q 191 (197)
T ss_dssp C
T ss_pred c
Confidence 3
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.23 E-value=1.3e-11 Score=136.16 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=106.7
Q ss_pred cccceEEEcccccccccccCCCCCCccCCCCCcccccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccc
Q 037340 1038 CRLQFLELSDWEQDIRGSSSGCTCLTSFSSESELPATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPN 1117 (1276)
Q Consensus 1038 ~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~ 1117 (1276)
.+|+.|++++|... .++. ....++|+.|+++.+ .++.++. +..+++|++|++++|. +..+|
T Consensus 46 ~~L~~L~l~~~~i~------------~~~~-~~~l~~L~~L~L~~n---~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~- 106 (291)
T 1h6t_A 46 NSIDQIIANNSDIK------------SVQG-IQYLPNVTKLFLNGN---KLTDIKP-LANLKNLGWLFLDENK-VKDLS- 106 (291)
T ss_dssp HTCCEEECTTSCCC------------CCTT-GGGCTTCCEEECCSS---CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-
T ss_pred CcccEEEccCCCcc------------cChh-HhcCCCCCEEEccCC---ccCCCcc-cccCCCCCEEECCCCc-CCCCh-
Confidence 37888888775321 1111 112345555555433 3333443 5567788888888774 44454
Q ss_pred cCCCCCccceeeeccCCCCcccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCe
Q 037340 1118 SMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTE 1197 (1276)
Q Consensus 1118 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~ 1197 (1276)
.+..+++|++|++++|. ++.++....+++|+.|++++|.+.+.. .+..+++|+.|++++|...-......+++|+.
T Consensus 107 ~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~ 182 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182 (291)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred hhccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchhhcCCCccCE
Confidence 37778888888888877 666665566778888888888777652 36777888888888764433222345677888
Q ss_pred eeccCCCCCccccCCCCCCCCcCceeccCCC
Q 037340 1198 LKISDMPSLERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1198 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
|++++| .++.++ .+..+++|+.|++++|+
T Consensus 183 L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKN-HISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSS-CCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred EECCCC-cCCCCh-hhccCCCCCEEECcCCc
Confidence 888885 466666 46777888888888774
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=1.2e-10 Score=121.82 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=85.4
Q ss_pred CCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1096 LPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1096 ~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
..+++|++|++++|...+..+..+..+++|++|++++|. ++.++.. ..+++|+.|++++|.+.+..+. .+..+++|
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L 150 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSL 150 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTC
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHH-HhccCCCc
Confidence 345688888888885554444456788888888888887 6666653 4567888888888887765543 36778888
Q ss_pred ceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCC
Q 037340 1174 RKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1174 ~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
+.|++++|. +...+++|+.|+++.|.....+|..++.++. ++..|.
T Consensus 151 ~~L~l~~N~-----~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~ 196 (208)
T 2o6s_A 151 QYIWLHDNP-----WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCS 196 (208)
T ss_dssp CEEECCSCC-----BCCCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBT
T ss_pred cEEEecCCC-----eecCCCCHHHHHHHHHhCCceeeccCccccC----Cccccc
Confidence 888888862 2234567888888887777788876665544 444553
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=8.9e-11 Score=123.47 Aligned_cols=94 Identities=20% Similarity=0.348 Sum_probs=67.1
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhccccCCccccceeeccccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|++++|......|..|..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467788888888887665 678888888888887765 57888888888888884333336778888888888888877
Q ss_pred ccccCccc-cCCccccccC
Q 037340 680 SLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 680 ~l~~lp~~-i~~L~~L~~L 697 (1276)
+..+|.. +..+++|+.|
T Consensus 92 -l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 92 -ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp -CCCCCTTTTTTCTTCCEE
T ss_pred -CCccCHhHccCCCCCCEE
Confidence 6666654 3444444444
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.19 E-value=4e-11 Score=145.38 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=92.4
Q ss_pred ccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeE
Q 037340 1073 ATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLE 1152 (1276)
Q Consensus 1073 ~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1152 (1276)
++|+.|+|+-+ .+..++. +..+++|+.|+|++|. +..+| .+..+++|+.|+|++|. +..++....+++|+.|+
T Consensus 65 ~~L~~L~Ls~N---~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGN---KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTS---CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEE
T ss_pred CCCCEEEeeCC---CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEE
Confidence 34555554322 3333333 4566777778777773 34444 57777777888887777 66666556677778888
Q ss_pred eecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCC
Q 037340 1153 FEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1153 l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
|++|.+.+.. .+..+++|+.|+|++|...-......+++|+.|+|++| .++.+| .+..+++|+.|+|++|+
T Consensus 138 Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 138 LGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCCCccCCch---hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 8777777652 36677777888877764332222345677777888775 455565 56777777777777774
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=8e-13 Score=159.43 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=38.5
Q ss_pred ccccccceeeccCCcccccchhhhccccccEEecCCcc-------------chhhhccccCCccccceee-cccc
Q 037340 618 GNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCY-------------WLKKLCQDMGNLTKLHHLI-NFNV 678 (1276)
Q Consensus 618 ~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~-------------~l~~lp~~i~~L~~L~~L~-l~~~ 678 (1276)
..+++|+.|+|++|.++.+|++|++|++|+.|++++|. .....|..++.|++|++|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 44566666666666666666666666666666665542 2344566677777777777 4443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=2.3e-11 Score=122.26 Aligned_cols=129 Identities=21% Similarity=0.176 Sum_probs=92.3
Q ss_pred CCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccc-cchhhhccccc
Q 037340 568 VKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQF-LPDSINSLYNL 646 (1276)
Q Consensus 568 ~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L 646 (1276)
.++|+.|.+.++.... ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|
T Consensus 23 ~~~L~~L~l~~n~l~~----~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSND----GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBT----TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCCh----hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3566667666654210 11222256777888888888888777 677888888888888888876 67777778888
Q ss_pred cEEecCCccchhhhc--cccCCccccceeecccccccccCcc----ccCCccccccCCceEec
Q 037340 647 YTILLEDCYWLKKLC--QDMGNLTKLHHLINFNVLSLKEMPK----GFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 647 ~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~ 703 (1276)
++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 88888888 566655 567888888888888887 777776 57778888888766554
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=1.6e-11 Score=120.56 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=98.5
Q ss_pred CCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccc-cchhhhccccc
Q 037340 568 VKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQF-LPDSINSLYNL 646 (1276)
Q Consensus 568 ~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~L~~L 646 (1276)
.++++.|.+.++.... ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++++++|
T Consensus 16 ~~~l~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE----GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT----TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCCh----hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3567777777654210 12223378889999999999999888 778999999999999999987 78888889999
Q ss_pred cEEecCCccchhhhc--cccCCccccceeecccccccccCcc----ccCCccccccCCc
Q 037340 647 YTILLEDCYWLKKLC--QDMGNLTKLHHLINFNVLSLKEMPK----GFGKLTCLLTLRR 699 (1276)
Q Consensus 647 ~~L~l~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~ 699 (1276)
++|++++| .+..+| ..+..+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 99999999 566554 778999999999999997 777775 4778888887754
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=1.4e-10 Score=123.03 Aligned_cols=82 Identities=26% Similarity=0.256 Sum_probs=55.8
Q ss_pred EEEEecCccccccCcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceeecccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFNV 678 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 678 (1276)
+.++.+++.+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 356677777777776554 6777777777777766 556777777777777777 45555543 567777777777777
Q ss_pred cccccCcc
Q 037340 679 LSLKEMPK 686 (1276)
Q Consensus 679 ~~l~~lp~ 686 (1276)
. +..+|.
T Consensus 99 ~-l~~l~~ 105 (229)
T 3e6j_A 99 Q-LTVLPS 105 (229)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCh
Confidence 6 555543
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=1.9e-11 Score=123.78 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=103.2
Q ss_pred cccCCCCcceeeccccccCCcchhhHHHHhcCCCC-ceEEEEecCccccccCcccccccccceeeccCCcccccchhh-h
Q 037340 564 SICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLP-RLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSI-N 641 (1276)
Q Consensus 564 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~ 641 (1276)
.+.++.+|+.|.+.++... .++.+..+. +|++|+|++|.++.+ ..|+.+++|++|+|++|.|+.+|..+ +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-------~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-------VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-------SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCc-------hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 3456778888888776532 123344444 899999999999888 67899999999999999999888665 8
Q ss_pred ccccccEEecCCccchhhhcc--ccCCccccceeecccccccccCccc----cCCccccccCCceEec
Q 037340 642 SLYNLYTILLEDCYWLKKLCQ--DMGNLTKLHHLINFNVLSLKEMPKG----FGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 642 ~L~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 703 (1276)
.+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999 6677876 78899999999999998 7788875 7888888888766543
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=2.5e-10 Score=121.03 Aligned_cols=137 Identities=20% Similarity=0.176 Sum_probs=104.9
Q ss_pred CCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccc
Q 037340 1087 NLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQ 1164 (1276)
Q Consensus 1087 ~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~ 1164 (1276)
.++.+|..+. ++|+.|++++|...+..|..+.++++|++|++++|. ++.++.. ..+++|+.|+|++|.+.+..+.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 4556666443 689999999997777778888999999999999998 7778754 4578999999999998876554
Q ss_pred cccCCCCCcceEEecCCCCCCc-cCCCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCC
Q 037340 1165 WGLNRFNSLRKLKISGGFPDLV-SSPRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1165 ~~l~~l~~L~~L~Ls~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1228 (1276)
. +..+++|+.|++++|..... .....+++|+.|++++| .++.+|. .+..+++|+.|++++||
T Consensus 107 ~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 107 V-FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp T-TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred H-hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 3 77889999999998754421 11125678888899885 5666664 46788889999998886
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=2e-10 Score=120.71 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=67.9
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccch--hhhccccccEEecCCccchhhhcc-ccCCccccceeeccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPD--SINSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLINFN 677 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~ 677 (1276)
+.++++++.++.+|..+. ..+++|+|++|.|+.++. .+.++++|++|++++| .+..+|. .+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 478888888888887664 356889999998888743 3788888999999888 4555554 688888888888888
Q ss_pred ccccccCccc-cCCccccccC
Q 037340 678 VLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L 697 (1276)
|. +..+|.. ++.+++|++|
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEE
T ss_pred Cc-cCccCHhHhcCCcCCCEE
Confidence 87 6665543 4444444443
No 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=5.7e-10 Score=120.60 Aligned_cols=199 Identities=17% Similarity=0.122 Sum_probs=118.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++||+.+++.+..++.... ..+++.|+|++|+||||+|+.+++.. ...+.... ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~~----~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGITA----TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSCS----SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCCC----CCCcccHH-HHHHh
Confidence 468999999999999996532 24588999999999999999998732 22111000 00000000 00000
Q ss_pred HHh----hcccCCCCCcHHHHHHHHHHH----hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhh-h
Q 037340 266 RSI----ADDQIKDDDDLNSLQVKLKKQ----LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGV-A 336 (1276)
Q Consensus 266 ~~l----~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v-~ 336 (1276)
... ...........+.....+... ..+++.+||+||++.-+...+..+...+.....+.++|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 000000111111222211111 1356789999999765556677776665554567888888876432 1
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHh
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLL 400 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 400 (1276)
..+ .....+.+.+++.++..+++.+.+..... .--++..+.|++.++|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 22357899999999999999877643221 1124667889999999999888776543
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=7e-11 Score=128.13 Aligned_cols=148 Identities=17% Similarity=0.158 Sum_probs=114.0
Q ss_pred ccccceEEEecCCCCCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCCCCCCCCceeE
Q 037340 1073 ATLEHLEIRVDGWPNLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPEDGFPTNLQSLE 1152 (1276)
Q Consensus 1073 ~~L~~L~l~~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~ 1152 (1276)
.+++.|++. ++ .+..+| .+..+++|++|++++|. +..+|. +..+++|++|++++|. ++.++.... ++|+.|+
T Consensus 41 ~~L~~L~l~--~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGD--NS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp TTCSEEECT--TS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEE
T ss_pred CcCcEEECc--CC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCc-cCCcCcccc-CcccEEE
Confidence 344554443 33 455666 46678999999999994 555555 8899999999999998 788877655 8999999
Q ss_pred eecCCCCccccccccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCCCCcc
Q 037340 1153 FEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCPKLKY 1232 (1276)
Q Consensus 1153 l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 1232 (1276)
+++|.+.+.. .+..+++|+.|++++|...-......+++|+.|++++|. ++.+ ..+..+++|+.|++++|+ +..
T Consensus 113 L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~-~~~ 186 (263)
T 1xeu_A 113 LDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK-CVN 186 (263)
T ss_dssp CCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE-EEC
T ss_pred ccCCccCCCh---hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc-ccC
Confidence 9999998753 378999999999999865544333467899999999964 5556 467899999999999985 444
Q ss_pred cC
Q 037340 1233 FS 1234 (1276)
Q Consensus 1233 l~ 1234 (1276)
.|
T Consensus 187 ~~ 188 (263)
T 1xeu_A 187 EP 188 (263)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=4.8e-11 Score=148.85 Aligned_cols=107 Identities=24% Similarity=0.274 Sum_probs=98.9
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCcccccee
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHHL 673 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 673 (1276)
|..++.|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence 8899999999999999999999999999999999999999999999999999999999999 577999999999999999
Q ss_pred ecccccccccCccccCCccccccCCceEe
Q 037340 674 INFNVLSLKEMPKGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 674 ~l~~~~~l~~lp~~i~~L~~L~~L~~~~~ 702 (1276)
+|++|. +..+|..|++|++|++|++..+
T Consensus 299 ~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 299 YFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred ECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 999998 8999999999999999976544
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=3.8e-12 Score=145.97 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=37.9
Q ss_pred CeeEEEEeecCCCCcccc----cCCCC-CccceeeeccCCCCcc-----cCCC--CCCCCCceeEeecCCCCcccc---c
Q 037340 1100 KLTELMIWSCENLKALPN----SMHNL-TSLLHLEIGRCPSLVS-----FPED--GFPTNLQSLEFEDLKISKPLF---Q 1164 (1276)
Q Consensus 1100 ~L~~L~l~~~~~l~~lp~----~l~~l-~~L~~L~l~~c~~l~~-----l~~~--~~~~~L~~L~l~~n~~~~~~~---~ 1164 (1276)
+|++|++++|......+. .+..+ ++|++|++++|. ++. ++.. ..+++|++|++++|.+.+... .
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 566666666644333322 22233 366666666665 443 1111 113456666666666554322 1
Q ss_pred cccCCCCCcceEEecCC
Q 037340 1165 WGLNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1165 ~~l~~l~~L~~L~Ls~~ 1181 (1276)
..+..+++|+.|++++|
T Consensus 247 ~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HTTTTTTTCSEEEEEHH
T ss_pred HHHhcCCCccEEEeccC
Confidence 12344555555555553
No 130
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=4.9e-10 Score=117.79 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=81.4
Q ss_pred CcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCcccccc
Q 037340 1088 LESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQW 1165 (1276)
Q Consensus 1088 l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~ 1165 (1276)
++.+|..+. ++|++|++++|......+..+..+++|+.|++++|. +..++.. ..+++|++|+|++|.+....+.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~- 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKS- 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTT-
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHh-
Confidence 444554332 467777777774444344466677777777777776 5555322 3456777777777776644433
Q ss_pred ccCCCCCcceEEecCCCCCCcc--CCCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCC
Q 037340 1166 GLNRFNSLRKLKISGGFPDLVS--SPRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1166 ~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 1228 (1276)
.+.++++|++|+|++|...-.. ....+++|+.|+|++|. ++.++. .+..+++|++|++++||
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence 2566777777777766433221 11245677777777744 444443 45777788888888775
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=9.3e-11 Score=117.75 Aligned_cols=138 Identities=20% Similarity=0.204 Sum_probs=111.3
Q ss_pred ccCccceEEEEEecCCCcccccccccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccc-cCccccc
Q 037340 541 EFSQSLRHFSYIRGGYDGKNRLESICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISK-LPNEIGN 619 (1276)
Q Consensus 541 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~-lp~~i~~ 619 (1276)
..+..++++.+..+..........+..+++|+.|.+.++... . ...+..+++|++|+|++|.++. +|..+.+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~------~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------S-VSNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC------C-CSSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC------C-hhhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 345778888887664331111223577899999999887531 1 1458999999999999999998 7888888
Q ss_pred ccccceeeccCCcccccc--hhhhccccccEEecCCccchhhhcc----ccCCccccceeecccccccccCccc
Q 037340 620 LKHLRFLNLSGTSIQFLP--DSINSLYNLYTILLEDCYWLKKLCQ----DMGNLTKLHHLINFNVLSLKEMPKG 687 (1276)
Q Consensus 620 L~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~lp~~ 687 (1276)
+++|++|+|++|.|+.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999987 78999999999999999 6777776 78999999999999998 7777754
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.10 E-value=5.4e-10 Score=116.75 Aligned_cols=127 Identities=20% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCcceE
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKL 1176 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 1176 (1276)
++|++|++++|...+..+..+..+++|++|++++|. ++.++.. ..+++|++|++++|.+.+..+. .+..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG-VFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHh-HhcCccCCCEE
Confidence 356666666664433333345566666666666655 4455442 2345666666666665544332 24556666666
Q ss_pred EecCCCCCCccC--CCCCCCcCeeeccCCCCCccccCC-CCCCCCcCceeccCCC
Q 037340 1177 KISGGFPDLVSS--PRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1177 ~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 1228 (1276)
++++|...-... ...+++|++|++++|. ++.++.. +..+++|++|++++|+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC
Confidence 666653221111 1234566666666643 3444433 4556666666666654
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=7.3e-10 Score=116.48 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=104.5
Q ss_pred CCcccCCCCCCCCCeeEEEEeecCCCCccc-ccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCcccc
Q 037340 1087 NLESFPEEGLPSTKLTELMIWSCENLKALP-NSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLF 1163 (1276)
Q Consensus 1087 ~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~ 1163 (1276)
.++.+|..+. ..+++|++++|......| ..+..+++|++|++++|. ++.++.. ..+++|++|++++|.+.+..+
T Consensus 22 ~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence 4556666543 467899999996554434 347889999999999988 7777653 567899999999999987766
Q ss_pred ccccCCCCCcceEEecCCCCCCcc--CCCCCCCcCeeeccCCCCCccccCCCCCCCCcCceeccCCC
Q 037340 1164 QWGLNRFNSLRKLKISGGFPDLVS--SPRFPASLTELKISDMPSLERLSSIGENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1164 ~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 1228 (1276)
.. +..+++|++|++++|...-.. ....+++|++|+|++|...+..|..+..+++|++|++++|+
T Consensus 99 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KM-FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GG-GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hH-hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 54 788999999999987544321 22357899999999965444447778899999999999987
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=2e-10 Score=131.47 Aligned_cols=161 Identities=20% Similarity=0.145 Sum_probs=98.1
Q ss_pred CCcccCCCCCCCCCeeEEEEeecCCCCcccccCC-CCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCcccc
Q 037340 1087 NLESFPEEGLPSTKLTELMIWSCENLKALPNSMH-NLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLF 1163 (1276)
Q Consensus 1087 ~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~ 1163 (1276)
.++.+|..+. ..++.|+|++|...+..+..+. ++++|++|++++|. +..++.. ..+++|++|+|++|.+....+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 105 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence 3445554433 3567777777744443444455 67777777777776 6666543 445677777777777665444
Q ss_pred ccccCCCCCcceEEecCCCCCCcc--CCCCCCCcCeeeccCCCCCccccCCC----CCCCCcCceeccCCCCCcccCCCC
Q 037340 1164 QWGLNRFNSLRKLKISGGFPDLVS--SPRFPASLTELKISDMPSLERLSSIG----ENLTSLKFLDLDNCPKLKYFSKQG 1237 (1276)
Q Consensus 1164 ~~~l~~l~~L~~L~Ls~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~l~~~~ 1237 (1276)
. .+.++++|+.|+|++|...... ....+++|+.|+|++| .++.+|... ..+++|+.|++++| .++.+|...
T Consensus 106 ~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~ 182 (361)
T 2xot_A 106 F-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTD 182 (361)
T ss_dssp T-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHH
T ss_pred H-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHH
Confidence 3 2667777777777776443221 1224567777777774 566666543 46788888888887 466666432
Q ss_pred ---Ccc-ccccccccCChhH
Q 037340 1238 ---LPK-SLLRLIIDECPLI 1253 (1276)
Q Consensus 1238 ---l~~-~L~~L~i~~cp~l 1253 (1276)
++. .++.|++.++|--
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 222 2467888877654
No 135
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.07 E-value=1e-10 Score=133.85 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=56.3
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccchh-hh-ccccccEEecCCccchhhhc-cccCCccccceeeccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDS-IN-SLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLINFN 677 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~ 677 (1276)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++.+|++|+|++| .+..+| ..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 356666666666665553 3466677777766666544 33 6667777777666 444444 3466667777777766
Q ss_pred ccccccCccc-cCCccccccCC
Q 037340 678 VLSLKEMPKG-FGKLTCLLTLR 698 (1276)
Q Consensus 678 ~~~l~~lp~~-i~~L~~L~~L~ 698 (1276)
|. +..+|.. +..+++|+.|+
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEE
T ss_pred Cc-CCcCCHHHhCCCcCCCEEE
Confidence 66 5555442 45555555543
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.04 E-value=1.4e-09 Score=115.58 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=115.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-cc-cEEEEEEcCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-FQ-IKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f~-~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+++||+..++++.+++... ..+.+.|+|++|+|||++|+.+++. .... +. ..+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRHK 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHHH
Confidence 46899999999999999643 2334899999999999999999873 2222 21 2233333333332222111
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhh-hhhc-CC
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGV-AESM-GV 341 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v-~~~~-~~ 341 (1276)
+ ..+..... ...+++.+||+||++.-.....+.+...+.....+.++|+||+.... ...+ ..
T Consensus 89 ~-~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 89 I-KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp H-HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred H-HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 1 11111000 01256889999999765555566665555444567788988876432 1111 12
Q ss_pred CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHH
Q 037340 342 DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGG 398 (1276)
Q Consensus 342 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 398 (1276)
...+.+.+++.++..+++.+.+...+. . --.+..+.|++.++|.|..+..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 237899999999999999876642221 1 1235677889999999986554433
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.01 E-value=1e-10 Score=114.68 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=92.0
Q ss_pred CCCCceEEEEecCcccc--ccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 595 LNLPRLRVFSLRGYCIS--KLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++|.....+|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44578999999999998 8899999999999999999999988 78999999999999999443338887888999999
Q ss_pred eecccccccccCc--cccCCccccccCCceEe
Q 037340 673 LINFNVLSLKEMP--KGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 673 L~l~~~~~l~~lp--~~i~~L~~L~~L~~~~~ 702 (1276)
|++++|. +..+| ..++.+++|++|++..+
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 9999998 87765 67888888888866544
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.99 E-value=4.6e-10 Score=115.04 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=85.2
Q ss_pred CceEEEEecCccccccCcccccccccceeeccCCcccccc-hhhhccccccEEecCCccchhhhc-cccCCccccceeec
Q 037340 598 PRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLP-DSINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLIN 675 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l 675 (1276)
+.|++|+|++|.++.+|..|.++.+|++|+|++|.|+.+| ..|.++++|++|+|++| .+..+| ..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4788999999999989888999999999999999998885 45889999999999998 455554 46888999999999
Q ss_pred ccccccccCccc-cCCccccccCCceEec
Q 037340 676 FNVLSLKEMPKG-FGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 676 ~~~~~l~~lp~~-i~~L~~L~~L~~~~~~ 703 (1276)
++|. +..+|.. +..+++|+.|++..+.
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 9988 8888775 7788888887665443
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=2.5e-10 Score=137.63 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=61.9
Q ss_pred cCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhh--ccccCCccccc
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKL--CQDMGNLTKLH 671 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~i~~L~~L~ 671 (1276)
+..+++|++|+|++|.++.+|..|+.+++|++|+|++|.|+.+| .++++++|++|+|++| .+..+ |..++.|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 55566677777777777777767777777777777777777666 6677777777777776 44444 66677777777
Q ss_pred eeecccccccccCcccc
Q 037340 672 HLINFNVLSLKEMPKGF 688 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~~i 688 (1276)
+|++++|. +..+|+.+
T Consensus 537 ~L~L~~N~-l~~~~~~~ 552 (567)
T 1dce_A 537 LLNLQGNS-LCQEEGIQ 552 (567)
T ss_dssp EEECTTSG-GGGSSSCT
T ss_pred EEEecCCc-CCCCccHH
Confidence 77777766 66555543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=2.1e-09 Score=121.27 Aligned_cols=119 Identities=10% Similarity=0.121 Sum_probs=72.4
Q ss_pred CCCcceeeccccccCCcchhhHHHHhcCC-CCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhc----
Q 037340 568 VKHLRTFLPMKLKYGGTFLAWSVLQMLLN-LPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINS---- 642 (1276)
Q Consensus 568 ~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~---- 642 (1276)
+.++..|.+.+. +....+..+.. +++|++|||++|.|......-+.+..++++.+..+.|. +..|.+
T Consensus 24 ~~~l~~L~l~g~------i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK------LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE------ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETT
T ss_pred hCceeEEEEecc------ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcccccc
Confidence 345566666543 11223333333 88899999999998832211223333566666666332 234666
Q ss_pred ----cccccEEecCCccchhhhcc-ccCCccccceeecccccccccCccc-cCCccccccC
Q 037340 643 ----LYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLINFNVLSLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 643 ----L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L 697 (1276)
+.+|+.|++.. .+..++. .|..+++|+.|++.+|. +..++.. |....++..+
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred cccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 88999999987 4566654 48888999999988877 6566554 5555444444
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.95 E-value=3.9e-10 Score=114.08 Aligned_cols=105 Identities=27% Similarity=0.332 Sum_probs=90.4
Q ss_pred cCCCCceEEEEecCccccccCccccccc-ccceeeccCCcccccchhhhccccccEEecCCccchhhhcccc-CCccccc
Q 037340 594 LLNLPRLRVFSLRGYCISKLPNEIGNLK-HLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDM-GNLTKLH 671 (1276)
Q Consensus 594 l~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i-~~L~~L~ 671 (1276)
+..+..|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..++++++|++|++++| .+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 6778999999999999999875 55555 999999999999988 67999999999999999 677787665 8999999
Q ss_pred eeecccccccccCcc--ccCCccccccCCceEe
Q 037340 672 HLINFNVLSLKEMPK--GFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 672 ~L~l~~~~~l~~lp~--~i~~L~~L~~L~~~~~ 702 (1276)
+|++++|. +..+|. .++.+++|+.|++..+
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence 99999998 888886 6788888888765443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.93 E-value=3.4e-09 Score=108.54 Aligned_cols=93 Identities=26% Similarity=0.348 Sum_probs=76.0
Q ss_pred EEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhc-cccCCccccceeeccccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 679 (1276)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..+.++++|++|++++| .+..++ ..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 578999999999998764 6899999999999999999999999999999999 555555 568999999999999988
Q ss_pred ccccCccc-cCCccccccC
Q 037340 680 SLKEMPKG-FGKLTCLLTL 697 (1276)
Q Consensus 680 ~l~~lp~~-i~~L~~L~~L 697 (1276)
+..+|.. ++.+++|+.|
T Consensus 90 -l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEE
T ss_pred -cCEeCHHHhCCCCCCCEE
Confidence 7666542 4444444444
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=1.2e-09 Score=111.93 Aligned_cols=103 Identities=17% Similarity=0.278 Sum_probs=78.7
Q ss_pred ceEEEEecCccccccCcc--cccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhc-cccCCccccceee
Q 037340 599 RLRVFSLRGYCISKLPNE--IGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLI 674 (1276)
Q Consensus 599 ~Lr~L~L~~~~i~~lp~~--i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~ 674 (1276)
.|++|+|++|.++.+|.. |+.+++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+| ..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 788888888888887653 78888888888888888877 667888888888888888 444444 4478888888888
Q ss_pred cccccccccC-ccccCCccccccCCceEec
Q 037340 675 NFNVLSLKEM-PKGFGKLTCLLTLRRFVVG 703 (1276)
Q Consensus 675 l~~~~~l~~l-p~~i~~L~~L~~L~~~~~~ 703 (1276)
+++|. +..+ |..++.+++|+.|++..+.
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 109 LYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88887 5554 5567888888877655443
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.89 E-value=6.5e-10 Score=138.66 Aligned_cols=120 Identities=24% Similarity=0.284 Sum_probs=100.1
Q ss_pred ccccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhc
Q 037340 563 ESICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINS 642 (1276)
Q Consensus 563 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 642 (1276)
..+..++.|+.|.+.++... .+...+..+++|++|+|++|.|+.+|..|++|.+|++|+|++|.|+.+|..|++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~------~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF------NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ----CCCCCCEEECTTSCCS------CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhhccCCCCcEEECCCCCCC------CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 34567888999999887531 233345589999999999999999999999999999999999999999999999
Q ss_pred cccccEEecCCccchhhhccccCCccccceeeccccccccc-CccccCC
Q 037340 643 LYNLYTILLEDCYWLKKLCQDMGNLTKLHHLINFNVLSLKE-MPKGFGK 690 (1276)
Q Consensus 643 L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~i~~ 690 (1276)
|.+|++|+|++| .+..+|..|++|++|++|++++|. +.. +|..++.
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTE 338 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhh
Confidence 999999999999 678999999999999999999998 554 4444433
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=7.3e-09 Score=116.82 Aligned_cols=187 Identities=19% Similarity=0.250 Sum_probs=115.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+. ..+++..+...... ..+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 46899999999999998543 233489999999999999999987321 11111 23344333322221 12222
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHh-cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhc-CC
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQL-SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESM-GV 341 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~-~~ 341 (1276)
++.+..... .+ .+++.++|+||++.-....+..+...+.....++++|+||+... +...+ ..
T Consensus 93 ~~~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKKL---------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBCC---------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhccc---------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 222211000 01 34688999999977555566666655544446778888887632 21111 22
Q ss_pred CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHHHH
Q 037340 342 DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLGGL 399 (1276)
Q Consensus 342 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~ 399 (1276)
...+.+.+++.++..+++.+.+...+. . --++.+..|++.++|.|. |+..+...
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 347999999999999999876532211 1 113567889999999995 45555443
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=3.2e-11 Score=124.84 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=82.1
Q ss_pred hcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhccccccEEecCCccchhhhccccCCccccce
Q 037340 593 MLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSLYNLYTILLEDCYWLKKLCQDMGNLTKLHH 672 (1276)
Q Consensus 593 ~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~ 672 (1276)
.+..+++|++|+|++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 4667788888888888888888 788888888888888888888888888888888888888 566676 5778888888
Q ss_pred eecccccccccCcc--ccCCccccccCCce
Q 037340 673 LINFNVLSLKEMPK--GFGKLTCLLTLRRF 700 (1276)
Q Consensus 673 L~l~~~~~l~~lp~--~i~~L~~L~~L~~~ 700 (1276)
|++++|. +..+|. .+..+++|++|++.
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEEC
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEec
Confidence 8888887 766654 46777777776543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=2.3e-09 Score=107.61 Aligned_cols=86 Identities=23% Similarity=0.309 Sum_probs=45.0
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCcccccchh-hhccccccEEecCCccchhhhccc-cCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 674 (1276)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 4455555555555554 34455555555555555555555443 345555555555555 34444443 55555555555
Q ss_pred cccccccccCc
Q 037340 675 NFNVLSLKEMP 685 (1276)
Q Consensus 675 l~~~~~l~~lp 685 (1276)
+++|. +...+
T Consensus 112 L~~N~-~~c~~ 121 (174)
T 2r9u_A 112 LYNNP-WDCEC 121 (174)
T ss_dssp CCSSC-BCTTB
T ss_pred eCCCC-ccccc
Confidence 55554 44333
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=5.7e-09 Score=117.57 Aligned_cols=268 Identities=14% Similarity=0.060 Sum_probs=142.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|++..++.+..++..... .....+.+.|+|++|+|||++|+.+++. ... ..+++..+......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHH-----
Confidence 4689999999998888753210 1123456889999999999999999873 322 2234433322221111
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC------------------CCCcEEE
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG------------------APGSKIV 327 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~------------------~~gs~il 327 (1276)
...+... ..+..+|++||+..........+...+... ..+.++|
T Consensus 81 -----------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 81 -----------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111110 135678889998664433333332222110 0235677
Q ss_pred EEecchh-hhhhcC--CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHHhcCC-
Q 037340 328 VTTRNLG-VAESMG--VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGLLRGR- 403 (1276)
Q Consensus 328 vTtr~~~-v~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~- 403 (1276)
.||.... +...+. ....+.+.+++.++..+++.+.+..... . --.+....+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-R---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6666432 211111 1247899999999999998877643321 1 124667889999999998877665544221
Q ss_pred -------CChhHHHHHHhhhcccccccccchhHHHHHhHhcCcHHHHHHHhhhc-ccCCC----------ceechHHHH-
Q 037340 404 -------DDPRDWEFVLNTDIWNLREESCNILPALRVSYHFLAPQLKQCFAYCS-LVPKD----------YEFQEEEII- 464 (1276)
Q Consensus 404 -------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~li- 464 (1276)
-+.+....++... ...+..++...+..+..+. .|..+ ..+.+..+.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1223333333221 1122334444444443322 12111 012222222
Q ss_pred ---HHHHHcCCCccccCCCCHHHHHHHHHH-HHHhCCcccc
Q 037340 465 ---LLWTAEGFLDQEYNGRKMEDLGREFVW-ELHSRSLFQQ 501 (1276)
Q Consensus 465 ---~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~~sll~~ 501 (1276)
.+-+..|++.....+....+.|..|+. ++.+|++||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 234567888765556667788888887 8888888874
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.86 E-value=7.3e-09 Score=106.15 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=48.4
Q ss_pred CCcccCCCCCCCCCeeEEEEeecCCCCcccc-cCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCcccc
Q 037340 1087 NLESFPEEGLPSTKLTELMIWSCENLKALPN-SMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLF 1163 (1276)
Q Consensus 1087 ~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~ 1163 (1276)
.++.+|..+. .+|++|++++|...+..+. .+..+++|++|++++|. ++.++.. ..+++|++|++++|.+.+..+
T Consensus 19 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCccCH
Confidence 3455555443 2666666666633332222 25666666666666666 4444322 335566666666666655444
Q ss_pred ccccCCCCCcceEEecCC
Q 037340 1164 QWGLNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1164 ~~~l~~l~~L~~L~Ls~~ 1181 (1276)
.. +.++++|++|+|++|
T Consensus 96 ~~-~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 96 KM-FLGLHQLKTLNLYDN 112 (192)
T ss_dssp SS-STTCTTCCEEECCSS
T ss_pred HH-hcCCCCCCEEECCCC
Confidence 32 445555555555553
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=2.7e-09 Score=120.26 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=52.7
Q ss_pred CCCCccEEEEecccCc--cccccC-CCCccEEEEccCCcccccc-cccCCCccEEEEccCCCcccchhhhccC-------
Q 037340 909 RFPLLKKLVIVGCEQL--LVTIQC-LPVLSELHIDGCRRVVFSS-LINFSSLKSIFLRDIANQVVLAGLFEQG------- 977 (1276)
Q Consensus 909 ~l~~L~~L~i~~~~~l--~~~~~~-l~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~n~~l~~~~~~~~~~------- 977 (1276)
.++++++|.+.+.-.. ...+.. +++|+.|+|++|....... ...++.+..+.+..+. ++...+..
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEE
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhccccccccc
Confidence 3456777777753211 111222 6777777777776331111 1122223445554442 44444445
Q ss_pred -CCCCceEEEecCCCCccccccccccCCCCCCcceEEEecC
Q 037340 978 -LPKLENLQICYVHEQTYLWQSETRLLHDISSLNQLQISGC 1017 (1276)
Q Consensus 978 -l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ls~c 1017 (1276)
+++|++|.+.+ .++.+ ....|.++++|+.|+++++
T Consensus 99 g~~~L~~l~L~~--~i~~I---~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 99 GKQTLEKVILSE--KIKNI---EDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp ECTTCCC-CBCT--TCCEE---CTTTTTTCTTCCEEEBCCS
T ss_pred ccCCCcEEECCc--cccch---hHHHhhcCcccceEEcCCC
Confidence 67777777665 22222 3456778888888888775
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=6.7e-11 Score=122.36 Aligned_cols=125 Identities=22% Similarity=0.204 Sum_probs=103.3
Q ss_pred cccCCCCcceeeccccccCCcchhhHHHHhcCCCCceEEEEecCccccccCcccccccccceeeccCCcccccchhhhcc
Q 037340 564 SICGVKHLRTFLPMKLKYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFLPDSINSL 643 (1276)
Q Consensus 564 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L 643 (1276)
.+..+++|+.|.+.++.... ++.+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .++++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-------l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-------ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-------CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-------ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 56788999999998875321 22567789999999999999999998899999999999999999988 69999
Q ss_pred ccccEEecCCccchhhhcc--ccCCccccceeecccccccccCccc-----------cCCccccccCC
Q 037340 644 YNLYTILLEDCYWLKKLCQ--DMGNLTKLHHLINFNVLSLKEMPKG-----------FGKLTCLLTLR 698 (1276)
Q Consensus 644 ~~L~~L~l~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~-----------i~~L~~L~~L~ 698 (1276)
++|++|++++| .+..+|. .+..+++|++|++++|. +...++. +..+++|+.|+
T Consensus 115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999 6666554 68999999999999998 5443222 66777777775
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=3.1e-09 Score=106.64 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=88.5
Q ss_pred EEEEecCccccccCcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceeecccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFNV 678 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 678 (1276)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 689999999999998775 8999999999999988 667999999999999999 67778776 589999999999999
Q ss_pred cccccCccc-cCCccccccCCceEeccC
Q 037340 679 LSLKEMPKG-FGKLTCLLTLRRFVVGKD 705 (1276)
Q Consensus 679 ~~l~~lp~~-i~~L~~L~~L~~~~~~~~ 705 (1276)
. +..+|.. ++.+++|+.|++..+...
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 8 8899876 889999999887665433
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.81 E-value=4.2e-09 Score=105.39 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=58.4
Q ss_pred EEEEecCccccccCcccccccccceeeccCCccccc-chhhhccccccEEecCCccchhhhccc-cCCccccceeecccc
Q 037340 601 RVFSLRGYCISKLPNEIGNLKHLRFLNLSGTSIQFL-PDSINSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLINFNV 678 (1276)
Q Consensus 601 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 678 (1276)
++++++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 456666666666665553 5666666666666655 444666666666666666 44455443 456666666666666
Q ss_pred cccccCccc-cCCccccccCCceEe
Q 037340 679 LSLKEMPKG-FGKLTCLLTLRRFVV 702 (1276)
Q Consensus 679 ~~l~~lp~~-i~~L~~L~~L~~~~~ 702 (1276)
. +..+|.. ++.+++|+.|++..+
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 5 5556553 556666666654443
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.75 E-value=1.1e-08 Score=103.61 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=67.8
Q ss_pred CceEEEEecCccccccCc-ccccccccceeeccCCcccccchh-hhccccccEEecCCccchhhhccc-cCCccccceee
Q 037340 598 PRLRVFSLRGYCISKLPN-EIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCYWLKKLCQD-MGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-i~~L~~L~~L~ 674 (1276)
+.|++|++++|.++.+|. .|+.+++|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 466777777777776653 456777777777777777766554 567777777777777 45555443 56777777777
Q ss_pred cccccccccCccc-cCCccccccCCceEe
Q 037340 675 NFNVLSLKEMPKG-FGKLTCLLTLRRFVV 702 (1276)
Q Consensus 675 l~~~~~l~~lp~~-i~~L~~L~~L~~~~~ 702 (1276)
+++|. +..+|.. +..+++|+.|++..+
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 77776 6666655 456666666655433
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.72 E-value=5.9e-08 Score=98.07 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=70.5
Q ss_pred CCcccCCCCCCCCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccc
Q 037340 1087 NLESFPEEGLPSTKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQ 1164 (1276)
Q Consensus 1087 ~l~~~p~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~ 1164 (1276)
.++.+|.... ++|++|++++|...+..+..+..+++|++|++++|. ++.++.. +.+++|+.|++++|.+.+..+.
T Consensus 18 ~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHH
Confidence 3444554332 577888888775544344456777788888887776 6666543 3466777777777776654433
Q ss_pred cccCCCCCcceEEecCCCCCCccCCCCCCCcCeeeccCCCCCccccCC-CCCCCCcCceeccCCC
Q 037340 1165 WGLNRFNSLRKLKISGGFPDLVSSPRFPASLTELKISDMPSLERLSSI-GENLTSLKFLDLDNCP 1228 (1276)
Q Consensus 1165 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 1228 (1276)
. +..+++|++|++++ | .++.+|.. +..+++|++|++++|+
T Consensus 95 ~-~~~l~~L~~L~l~~----------------------N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 95 V-FDKLTQLKELALDT----------------------N-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp T-TTTCTTCCEEECCS----------------------S-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred H-hhCCcccCEEECcC----------------------C-cceEeCHHHhcCCcccCEEEecCCC
Confidence 2 44455555555544 3 44555544 3667888888888875
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=1.4e-08 Score=101.67 Aligned_cols=87 Identities=26% Similarity=0.341 Sum_probs=76.5
Q ss_pred CceEEEEecCcccccc-CcccccccccceeeccCCcccccchh-hhccccccEEecCCccchhhhcc-ccCCccccceee
Q 037340 598 PRLRVFSLRGYCISKL-PNEIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCYWLKKLCQ-DMGNLTKLHHLI 674 (1276)
Q Consensus 598 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~ 674 (1276)
+.|++|+|++|.|+.+ |..|..+.+|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 7899999999999988 67799999999999999999999776 689999999999999 6777776 488999999999
Q ss_pred cccccccccCcc
Q 037340 675 NFNVLSLKEMPK 686 (1276)
Q Consensus 675 l~~~~~l~~lp~ 686 (1276)
+++|. +...+.
T Consensus 109 L~~N~-~~c~c~ 119 (170)
T 3g39_A 109 LLNNP-WDCACS 119 (170)
T ss_dssp CCSSC-BCTTBG
T ss_pred eCCCC-CCCCch
Confidence 99997 554443
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=8.5e-08 Score=108.18 Aligned_cols=186 Identities=15% Similarity=0.146 Sum_probs=113.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-c-ccEEEEEEcCCCCHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-F-QIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-f-~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++. .... + ...+.+..+...... ..+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN-VIRE 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH-TTHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH-HHHH
Confidence 35899999999999998653 3345899999999999999999973 2211 1 112333322211110 0111
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhc-CC
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESM-GV 341 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~-~~ 341 (1276)
.+..+.... ....+++.++|+||++.-....+..+...+.....++++|+||.... +...+ ..
T Consensus 96 ~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 96 KVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 111110000 00125678999999977655666666655554456778888887643 11111 11
Q ss_pred CCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHHHH
Q 037340 342 DPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLGGL 399 (1276)
Q Consensus 342 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 399 (1276)
...+.+.+++.++..+++.+.+...+. .--.+..+.|++.++|.|-.+..+...
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 236899999999999999876643321 122466788999999999865544433
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.1e-07 Score=99.84 Aligned_cols=174 Identities=10% Similarity=0.026 Sum_probs=104.6
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc------ccccEEEEEEcCCCCHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR------HFQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 260 (1276)
.+.||++|.++|...|...- .++..+.+.|+|++|+|||++|+.|++...... .| ..+.|++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 37899999999998886532 234667899999999999999999998432111 12 3456666677788899
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHH--hcCCcceEeecCCCccC-HhhHhhhccCCCCCCCCcEEEEEecchhh--
Q 037340 261 TKSILRSIADDQIKDDDDLNSLQVKLKKQ--LSGKKILLVLDDVWNEN-YENWSILSRPFGVGAPGSKIVVTTRNLGV-- 335 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlvlDdv~~~~-~~~~~~~~~~l~~~~~gs~ilvTtr~~~v-- 335 (1276)
+..|++++.+.........+.+...+... -.+++++++||++..-. ++..-.+............||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999999765322223334444433332 24667999999995432 11111121110011112233444433221
Q ss_pred -------hhhcCCCCceecCCCChhhHHHhhhhccc
Q 037340 336 -------AESMGVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 336 -------~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
..+++ ...+.+.+.+.+|-.+++.+.+.
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11221 24689999999999998887653
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=3.7e-06 Score=96.49 Aligned_cols=145 Identities=10% Similarity=0.172 Sum_probs=84.7
Q ss_pred CCCCeeEEEEeecCCCCccc-ccCCCCCccceeeeccCCCCcccCCCCC--CCCCceeEeecCCCC----ccccccccCC
Q 037340 1097 PSTKLTELMIWSCENLKALP-NSMHNLTSLLHLEIGRCPSLVSFPEDGF--PTNLQSLEFEDLKIS----KPLFQWGLNR 1169 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~n~~~----~~~~~~~l~~ 1169 (1276)
.|++|+.+++.++ +..++ ..|.+ ++|+.+.+.+ . ++.++...| +++|+.+++.+|.+. ..++...+.+
T Consensus 224 ~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 224 KTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred CCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 4556666666543 33333 33444 5666666632 2 455554432 466666666665543 1233334777
Q ss_pred CCCcceEEecCCCCCCccC-CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCCCCcccCCC---CCcccccc
Q 037340 1170 FNSLRKLKISGGFPDLVSS-PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCPKLKYFSKQ---GLPKSLLR 1244 (1276)
Q Consensus 1170 l~~L~~L~Ls~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~---~l~~~L~~ 1244 (1276)
|++|+.+.|..+...+... ...+++|+.++|.. .++.|+. .+.++ +|+++++.++ .+..++.. +++.+++.
T Consensus 299 c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~ 374 (401)
T 4fdw_A 299 CPKLARFEIPESIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITV 374 (401)
T ss_dssp CTTCCEECCCTTCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCE
T ss_pred CccCCeEEeCCceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccE
Confidence 7888888777543222211 12567888888855 3666654 56777 9999999887 45555554 34567788
Q ss_pred ccccCC
Q 037340 1245 LIIDEC 1250 (1276)
Q Consensus 1245 L~i~~c 1250 (1276)
|++...
T Consensus 375 l~vp~~ 380 (401)
T 4fdw_A 375 IRVPAE 380 (401)
T ss_dssp EEECGG
T ss_pred EEeCHH
Confidence 887654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.48 E-value=1.2e-07 Score=107.89 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=51.1
Q ss_pred EEecCc-cccccCcccccccccceeeccC-Ccccccc-hhhhccccccEEecCCccchhhhc-cccCCccccceeecccc
Q 037340 603 FSLRGY-CISKLPNEIGNLKHLRFLNLSG-TSIQFLP-DSINSLYNLYTILLEDCYWLKKLC-QDMGNLTKLHHLINFNV 678 (1276)
Q Consensus 603 L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 678 (1276)
++++++ .++.+|. |..+.+|++|+|++ |.|..+| ..|++|.+|++|+|++| .+..+| ..|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 355555 5666665 66666666666664 6666554 34566666666666666 333333 34556666666666665
Q ss_pred cccccCccccCCccccccCCce
Q 037340 679 LSLKEMPKGFGKLTCLLTLRRF 700 (1276)
Q Consensus 679 ~~l~~lp~~i~~L~~L~~L~~~ 700 (1276)
. +..+|..+.....|+.|.+.
T Consensus 91 ~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEEECC
T ss_pred c-cceeCHHHcccCCceEEEee
Confidence 5 55555543222225444433
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.47 E-value=6.3e-07 Score=100.57 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=112.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 45899999999999888442 333489999999999999999987311 11111 1223333321111
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHH--h-cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhc-
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQ--L-SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESM- 339 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~- 339 (1276)
............. + .+++.++|+||+..-.......+...+.....+.++|+||.... +...+
T Consensus 83 ------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 83 ------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred ------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111111111111 1 25678999999966555666777777765556778888886543 21111
Q ss_pred CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 340 GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
.....+.+.+++.++..+++.+.+...+. . --++....+++.++|.+-.+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC-C---BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12347899999999999998876643321 1 124567788899999997654433
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=8.2e-07 Score=102.15 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=112.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|++..++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+. ............+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 358999999999999996532 245788999999999999999987321111100 00000000111111
Q ss_pred HHh-------hcccCCCCCcHHHHHHHHHHH-hcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hh
Q 037340 266 RSI-------ADDQIKDDDDLNSLQVKLKKQ-LSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VA 336 (1276)
Q Consensus 266 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~ 336 (1276)
... .............+.+.+... ..+++.++|+||+..-+...+..+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000000112222222221111 135678999999966555566666655544445667777776432 21
Q ss_pred hhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 337 ESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 337 ~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
..+ .....+.+.+++.++..+++.+.+...+. .--.+.+..|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 22357899999999999999866532111 1123567789999999998776554
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=4.5e-06 Score=96.40 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=21.1
Q ss_pred cccCCCCccEEEEccCCc-ccccccccCCCccEEEEccC
Q 037340 927 TIQCLPVLSELHIDGCRR-VVFSSLINFSSLKSIFLRDI 964 (1276)
Q Consensus 927 ~~~~l~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~n 964 (1276)
.|.++++|+.+.+.++.. +....|.++++|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC
Confidence 455566666666655432 22344566666666666543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.31 E-value=2.4e-05 Score=90.34 Aligned_cols=140 Identities=13% Similarity=0.119 Sum_probs=66.7
Q ss_pred CCCCeeEEEEeecCCCCcc-cccCCCCCccceeeeccCCCCcccCCC--CCCCCCceeEeecCCCCccccccccCCCCCc
Q 037340 1097 PSTKLTELMIWSCENLKAL-PNSMHNLTSLLHLEIGRCPSLVSFPED--GFPTNLQSLEFEDLKISKPLFQWGLNRFNSL 1173 (1276)
Q Consensus 1097 ~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L 1173 (1276)
...+|+.+.+.+. ...+ ...+.++++|+.+.+..+. ..+... ..+..++.+....+. ++...+..+.+|
T Consensus 228 ~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L 299 (394)
T 4fs7_A 228 SKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSL 299 (394)
T ss_dssp TTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTC
T ss_pred ccCCCceEEECCC--ceecccccccccccceeEEcCCCc--ceeeccccccccccceeccCcee----eccccccccccc
Confidence 3455666655432 1222 2345566666666665432 233322 224455555544332 222235556666
Q ss_pred ceEEecCCCCCCccC-CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCCCCcccCCCCCc--ccccccccc
Q 037340 1174 RKLKISGGFPDLVSS-PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCPKLKYFSKQGLP--KSLLRLIID 1248 (1276)
Q Consensus 1174 ~~L~Ls~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~l~--~~L~~L~i~ 1248 (1276)
+.+.+..+...+... ...+++|++++|.+ .++.|+. .+.+|.+|+++++..+ ++.++..++. .+|+.+++.
T Consensus 300 ~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 300 TEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEEEECTTCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 666665532222111 11456666666643 2555542 3466666666666433 5555554432 345555543
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=2.5e-05 Score=89.60 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=15.4
Q ss_pred CccEEEEccCC-cccccccccCCCccEEEEccC
Q 037340 933 VLSELHIDGCR-RVVFSSLINFSSLKSIFLRDI 964 (1276)
Q Consensus 933 ~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~n 964 (1276)
+|+.+.+..+- .+....|.+|++|+.+++.+|
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTS
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCC
Confidence 45555555422 222334555555555555544
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.25 E-value=9e-07 Score=100.58 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=77.1
Q ss_pred HHHhcCCCCceEEEEecC-ccccccC-cccccccccceeeccCCcccccch-hhhccccccEEecCCccchhhhccccCC
Q 037340 590 VLQMLLNLPRLRVFSLRG-YCISKLP-NEIGNLKHLRFLNLSGTSIQFLPD-SINSLYNLYTILLEDCYWLKKLCQDMGN 666 (1276)
Q Consensus 590 ~~~~l~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~i~~ 666 (1276)
++. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 344 88889999999996 9999987 679999999999999999998855 6899999999999999 67788876554
Q ss_pred ccccceeeccccccccc
Q 037340 667 LTKLHHLINFNVLSLKE 683 (1276)
Q Consensus 667 L~~L~~L~l~~~~~l~~ 683 (1276)
..+|++|++.+|. +..
T Consensus 102 ~~~L~~l~l~~N~-~~c 117 (347)
T 2ifg_A 102 GLSLQELVLSGNP-LHC 117 (347)
T ss_dssp SCCCCEEECCSSC-CCC
T ss_pred cCCceEEEeeCCC-ccC
Confidence 4449999999987 543
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.23 E-value=1.2e-06 Score=93.65 Aligned_cols=173 Identities=15% Similarity=0.085 Sum_probs=99.0
Q ss_pred eeecc---hhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 187 KVYGR---EKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 187 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
+|+|+ +..++.+..+... ...+.+.|+|++|+||||+|+.+++. .......+.|+.++...+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 46663 3455556655532 23578899999999999999999873 3333345567665432110
Q ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhh--HhhhccCCCCC-CCC-cEEEEEecchh-----
Q 037340 264 ILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYEN--WSILSRPFGVG-APG-SKIVVTTRNLG----- 334 (1276)
Q Consensus 264 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~--~~~~~~~l~~~-~~g-s~ilvTtr~~~----- 334 (1276)
+. . .+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 ----~~-------~-------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ----ST-------A-------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----CG-------G-------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----HH-------H-------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 001 346799999996543222 22232222110 112 25777776422
Q ss_pred ----hhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 335 ----VAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 335 ----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
+...+.....+.+.+++.++..+++.+.+...+. .--++....|++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1122222367899999999999999876642221 1124667788899999887665443
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.6e-06 Score=89.11 Aligned_cols=45 Identities=24% Similarity=0.336 Sum_probs=38.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++||+++++++.+++.. ...+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999854 23466889999999999999999873
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=7.3e-06 Score=93.29 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=110.9
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.......+. ....+..+....... ..+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 46899999999999998543 223388999999999999999987421111122 122333333222222 2222
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhhhc-CCC
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAESM-GVD 342 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~~~-~~~ 342 (1276)
+..+........... .....-.+++-+|++|++..-.......+...+.......++|++|.... +...+ .-.
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222211110000000 00011123456999999966555555555555444445667777775432 21111 112
Q ss_pred CceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 343 PAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 343 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
..+.+.+++.++..+.+.+.+...+. . --++..+.|++.++|.|-.+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-K---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 36889999999999988876543221 1 12467788999999999765443
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.21 E-value=1.5e-05 Score=89.90 Aligned_cols=177 Identities=17% Similarity=0.210 Sum_probs=103.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|++..++++..++..... .....+.|.|+|++|+|||++|+.+++ +....| +.++.+.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhccch--------
Confidence 4699999999999998864311 123445689999999999999999987 333222 22322211111
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC------------------CCCcEEE
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG------------------APGSKIV 327 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~------------------~~gs~il 327 (1276)
......+.. ..+..+|++|++..........+...+... .++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111111 235678888888654433333333222111 1134666
Q ss_pred EEecchh-hhhhc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 328 VTTRNLG-VAESM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 328 vTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
.||.... +...+ .....+.+.+++.++..+++.+.+..... .--.+..+.|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6665422 11111 12357899999999999999876643221 122466778888999999554433
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.12 E-value=1.1e-05 Score=93.67 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=95.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccc--cEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
...+.|+|++|+||||||+.+++ .....+. .+++++.. .+..++...+... .. ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~------~~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG------KL----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT------CH----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc------cH----HHHHHHh
Confidence 56789999999999999999998 4444432 23444432 2334444444321 11 1233344
Q ss_pred cCCcceEeecCCCccCH--hhHhhhccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHh
Q 037340 291 SGKKILLVLDDVWNENY--ENWSILSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCV 358 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~--~~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 358 (1276)
..+.-+|++||++.-.. ...+.+...+.. ...|..||+||... .+..++.....+.+.+++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44678999999955321 222333332211 13467888888762 2233344446789999999999999
Q ss_pred hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 359 LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
+.+.+...+. ..+ .++...|++.++|.+-.+.
T Consensus 272 L~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 272 ARKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 9877642211 111 2456678889999886444
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.10 E-value=1.2e-05 Score=93.06 Aligned_cols=179 Identities=20% Similarity=0.174 Sum_probs=101.6
Q ss_pred CeeecchhhH---HHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDK---EAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
.+++|.+..+ ..+...+... ..+.+.|+|++|+||||+|+.+++ .....| +.++.......-.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHHHH
Confidence 4688998888 6777777543 347889999999999999999997 333222 33322211111112
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEE-Eecchh--hhhh-
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVV-TTRNLG--VAES- 338 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilv-Ttr~~~--v~~~- 338 (1276)
.++... ......+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +...
T Consensus 93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 211111 11112467889999999765444455555544431 233443 555432 1111
Q ss_pred cCCCCceecCCCChhhHHHhhhhcccCCCCC---CCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 339 MGVDPAYQLKELSNDDCLCVLTQISLGARDF---NMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 339 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
..-..++.+.+++.++..+++.+........ ....--.+..+.|++.++|.+-.+..+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1223478899999999999988775431110 111123466778888899988655433
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=1.6e-05 Score=87.15 Aligned_cols=184 Identities=17% Similarity=0.104 Sum_probs=100.0
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
-.+++|.+..++++.+++...... +-...+.+.|+|++|+|||++|+.+++. ....| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH-
Confidence 356899999999998887431000 0123567899999999999999999873 32222 2222221110
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------CH---hhHhhhccCCC--CCC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------NY---ENWSILSRPFG--VGA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~~---~~~~~~~~~l~--~~~ 321 (1276)
.. ...........+......++.+|++||+..- .. .....+...+. ...
T Consensus 90 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 1111122223333333456789999999431 11 11122222111 122
Q ss_pred CCcEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC-ChHHHH
Q 037340 322 PGSKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG-LPLAAK 394 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 394 (1276)
.+..||.||....... .. .....+.+...+.++..+++...+..... ....+ ...+++.+.| .|-.+.
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 4567778887543221 11 12346889999999999999877643221 11222 3556677776 453444
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=7.4e-05 Score=83.52 Aligned_cols=171 Identities=14% Similarity=0.047 Sum_probs=102.6
Q ss_pred hhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc--------------------ccccEEEEEE
Q 037340 192 EKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR--------------------HFQIKAWTCV 251 (1276)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~ 251 (1276)
++..+.+...+..+ .-.+.+.++|+.|+|||++|+.+++...-.. +++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 45566677776433 2346789999999999999999986311000 011 122221
Q ss_pred cCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh----cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEE
Q 037340 252 SEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL----SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIV 327 (1276)
Q Consensus 252 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~il 327 (1276)
.. .......++..+.+...- .+++-++|+|++..........+...+.....++.+|
T Consensus 82 ~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 001122333332222211 2567799999997665556666666665555667777
Q ss_pred EEecchh-hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 328 VTTRNLG-VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 328 vTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
++|.+.. +...+ .-...+.+.+++.++..+.+.+... . -.+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 7776642 22222 2235789999999999998887641 0 1355677999999999766443
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.98 E-value=6.9e-05 Score=81.30 Aligned_cols=195 Identities=13% Similarity=0.129 Sum_probs=100.6
Q ss_pred eeecchhhHHHHHH-------HHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 187 KVYGREKDKEAIVE-------LLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.++|.....+++.. .+... .....+.+.|+|++|+|||++|+.+++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-----
Confidence 46777776666655 33221 1245678899999999999999999873 22222 22222211
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc----------CHhhHhhhccCCC---CCCCCcEE
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE----------NYENWSILSRPFG---VGAPGSKI 326 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~----------~~~~~~~~~~~l~---~~~~gs~i 326 (1276)
+.+.. ...........+......+..+|++||+..- .......+...+. .......|
T Consensus 101 --------~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0011122233333444567889999998431 1111222322222 12334456
Q ss_pred EEEecchhhhhhc---C-CCCceecCCCCh-hhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC------ChHHHHH
Q 037340 327 VVTTRNLGVAESM---G-VDPAYQLKELSN-DDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG------LPLAAKT 395 (1276)
Q Consensus 327 lvTtr~~~v~~~~---~-~~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g------~PLai~~ 395 (1276)
|.||......... + -...+.+++++. ++..+++.+.. .. -.+....|++.+.| ..-++.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NF---KDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CS---CHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CC---CHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 7777766443321 1 134678888888 66666665431 11 13556778888877 4444444
Q ss_pred HHHHhcCCCChhHHHHHHh
Q 037340 396 LGGLLRGRDDPRDWEFVLN 414 (1276)
Q Consensus 396 ~~~~l~~~~~~~~w~~~l~ 414 (1276)
+-.+... .....+..++.
T Consensus 242 l~~a~~~-~~~~~~~~~~~ 259 (272)
T 1d2n_A 242 IEMSLQM-DPEYRVRKFLA 259 (272)
T ss_dssp HHHHTTS-CGGGHHHHHHH
T ss_pred HHHHhhh-chHHHHHHHHH
Confidence 4433322 23344555443
No 176
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=2.6e-05 Score=88.61 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=104.2
Q ss_pred CeeecchhhHHHHHHHH-hcCCCCCCCCccEEEEEecCCChHHHHHHHHhcch-h-hhc--cccc---------------
Q 037340 186 AKVYGREKDKEAIVELL-LRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDD-R-VQR--HFQI--------------- 245 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~--~f~~--------------- 245 (1276)
.+++|.+..++.+..++ ... .... +.|+|+.|+||||+|+.++... . ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46899999888888877 322 2233 8999999999999999887621 0 000 0000
Q ss_pred -----EEEEEEcCCC-CHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCC
Q 037340 246 -----KAWTCVSEDF-DVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGV 319 (1276)
Q Consensus 246 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~ 319 (1276)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++..-+......+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0111111000 000012222222211100 00000 000 0233566999999976555555555554443
Q ss_pred CCCCcEEEEEecchh-hhhhc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHHH
Q 037340 320 GAPGSKIVVTTRNLG-VAESM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTLG 397 (1276)
Q Consensus 320 ~~~gs~ilvTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 397 (1276)
...+..+|++|.+.. +...+ .-...+++.+++.++..+.+.+.+...+..-.. ++.+..|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHHH
Confidence 335677888876532 22211 122578999999999999998765322211110 2566788999999987555444
No 177
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=1.8e-05 Score=94.26 Aligned_cols=198 Identities=15% Similarity=0.147 Sum_probs=105.9
Q ss_pred CeeecchhhHHHHHHHHhcCCC-----------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-----------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
.+++|++..++++.+|+..... .+.+..+.+.|+|++|+||||+|+.+++. .. + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCc
Confidence 4689999999999999964110 00123578999999999999999999873 21 1 2233444443
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH---hhHhhhccCCCCCCCCcEEEEEec
Q 037340 255 FDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY---ENWSILSRPFGVGAPGSKIVVTTR 331 (1276)
Q Consensus 255 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~---~~~~~~~~~l~~~~~gs~ilvTtr 331 (1276)
.... .....+........ ...-...... .....+++.+||+|++..-.. ..+..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 3322 22222222211110 0000000000 001135678999999954321 112333332222 2334555554
Q ss_pred chh---hhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHHH
Q 037340 332 NLG---VAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTLGG 398 (1276)
Q Consensus 332 ~~~---v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~~ 398 (1276)
... +.........+.+.+++.++..+.+.+.+...+. ... ++....|++.++|. +-|+..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 422 2221122346889999999999888776543221 111 23567788999994 455555543
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.96 E-value=7.9e-05 Score=85.11 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=105.2
Q ss_pred CeeecchhhHHHH---HHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE----cCCCCHH
Q 037340 186 AKVYGREKDKEAI---VELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV----SEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~ 258 (1276)
.+|+|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++. ..... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~--l~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA--LGPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH--HCSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH--hcccC-Ccccccchhhhhcccchh
Confidence 4699999987764 44443321 22468999999999999999999973 32211 1122221 1223344
Q ss_pred HHHHHHHHHhhccc-----------------------------CCCCCcHHHHHHHHHHHh-----cCC----cceEeec
Q 037340 259 RVTKSILRSIADDQ-----------------------------IKDDDDLNSLQVKLKKQL-----SGK----KILLVLD 300 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~-----------------------------~~~~~~~~~~~~~l~~~l-----~~k----r~LlvlD 300 (1276)
+.+........... .........+...+.+.. .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433321100 000000122222222221 233 3599999
Q ss_pred CCCccCHhhHhhhccCCCCCCCCcEEEEEecc-----------------hhhhhhcCCCCceecCCCChhhHHHhhhhcc
Q 037340 301 DVWNENYENWSILSRPFGVGAPGSKIVVTTRN-----------------LGVAESMGVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 301 dv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
++..-.......+...+...... .++++|.. +.+..++ ..+.+.+++.++..+++.+.+
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHH
Confidence 99765555666666555443333 34444431 1222222 347899999999999998765
Q ss_pred cCCCCCCCCcchHHHHHHHHHHcC-CChHHHH
Q 037340 364 LGARDFNMHQSLKEVGEKIAMKCR-GLPLAAK 394 (1276)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~i~~~~~-g~PLai~ 394 (1276)
..... .--.+....|++.+. |.|-.+.
T Consensus 273 ~~~~~----~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 273 EEEDV----EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHTTC----CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhcCCCHHHHH
Confidence 43221 112456777888887 7775444
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.91 E-value=4.4e-05 Score=82.46 Aligned_cols=187 Identities=14% Similarity=0.056 Sum_probs=98.5
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++.+.+++.....+ +....+.+.|+|++|+|||++|+.+++ ..... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHhh--
Confidence 46889998888776654321100 113346788999999999999999987 33222 233333321110
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC------------H---hhHhhhccCCCC--CCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN------------Y---ENWSILSRPFGV--GAP 322 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~------------~---~~~~~~~~~l~~--~~~ 322 (1276)
. .......+...+.......+.+|++||+..-. . .....+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 11111222333333334567899999995420 0 111222222211 123
Q ss_pred CcEEEEEecchhhh-hhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 323 GSKIVVTTRNLGVA-ESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 323 gs~ilvTtr~~~v~-~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
+..||.||...... ... .-...+.+...+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 55667777654321 111 12356778899999999998876543221 11122234678888888754 44433
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.90 E-value=3.6e-05 Score=85.49 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=88.9
Q ss_pred eeecchhhHHHHHHHHhcCC---------CCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 187 KVYGREKDKEAIVELLLRDD---------LRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
+++|.+..++.+.+++.... .........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46788888888876653210 001234567899999999999999988873221111111223333311
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc---------CHhhHhhhccCCCCCCCCcEEEE
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE---------NYENWSILSRPFGVGAPGSKIVV 328 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~---------~~~~~~~~~~~l~~~~~gs~ilv 328 (1276)
.+.... ...........+... +.-+|++|++..- .......+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 010000 111112222222222 3469999999632 33444555555544445678888
Q ss_pred Eecchh----------hhhhcCCCCceecCCCChhhHHHhhhhccc
Q 037340 329 TTRNLG----------VAESMGVDPAYQLKELSNDDCLCVLTQISL 364 (1276)
Q Consensus 329 Ttr~~~----------v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 364 (1276)
||.... +..++ ...+.+++++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 886432 22222 25788999999998888877654
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=3.8e-05 Score=85.91 Aligned_cols=174 Identities=17% Similarity=0.153 Sum_probs=100.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.+.+++... ...+++.+.|++|+|||++|+.+++. ... ..+.++.+. .. ....+..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-----~~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-----KIPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CK-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-----CCCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CC-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cC-HHHHHHHH
Confidence 46899999999999999643 23467888899999999999999873 321 223344322 12 22222222
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-HhhHhhhccCCCCCCCCcEEEEEecchh-----hhhhc
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-YENWSILSRPFGVGAPGSKIVVTTRNLG-----VAESM 339 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-~~~~~~~~~~l~~~~~gs~ilvTtr~~~-----v~~~~ 339 (1276)
........ ..+++-++++||+..-. .+....+...+.....+.++|+||.... +..++
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22111100 02367899999996654 4445555544433334668888887533 22222
Q ss_pred CCCCceecCCCChhhHHHh-------hhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 340 GVDPAYQLKELSNDDCLCV-------LTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 340 ~~~~~~~l~~L~~~~~~~l-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
..+.+.+++.++-.++ +.+.+...+. ...+ .+....|++.++|.+-.+
T Consensus 158 ---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 158 ---RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp ---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHH
T ss_pred ---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHH
Confidence 4688999998874332 2222211111 1111 266777888898876543
No 182
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.86 E-value=5.8e-06 Score=92.86 Aligned_cols=125 Identities=21% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccC--C--CCCCCCCceeEeecCC--CCcc------cccc
Q 037340 1098 STKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFP--E--DGFPTNLQSLEFEDLK--ISKP------LFQW 1165 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~--~--~~~~~~L~~L~l~~n~--~~~~------~~~~ 1165 (1276)
+++|+.|.|++|..+ .++. + .+++|++|++..|. +..-. . ...+++|+.|+|+.+. ..+. .+..
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 456666666665322 2222 2 25566666666554 22110 0 0134566666664211 0000 0000
Q ss_pred ccCCCCCcceEEecCCCCCC-----ccCCCCCCCcCeeeccCCCCCcc-----ccCCCCCCCCcCceeccCC
Q 037340 1166 GLNRFNSLRKLKISGGFPDL-----VSSPRFPASLTELKISDMPSLER-----LSSIGENLTSLKFLDLDNC 1227 (1276)
Q Consensus 1166 ~l~~l~~L~~L~Ls~~~~~~-----~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c 1227 (1276)
....+|+|+.|++++|...- ..-...+++|++|+|++|. ++. ++..+..+++|++|++++|
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCC
Confidence 01235666666665532210 0001134566666665533 332 3323344556666666655
No 183
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.84 E-value=1.8e-05 Score=80.45 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=38.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++||+.+++.+.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998542 3456789999999999999999873
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.79 E-value=0.00015 Score=80.74 Aligned_cols=186 Identities=15% Similarity=0.049 Sum_probs=101.6
Q ss_pred CeeecchhhHHHHHHHHhcC-------CCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRD-------DLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.+++|.+..++.+.+++... .. .....+-|.++|++|+|||++|+.+++ .....| +.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEchH------
Confidence 46899999999998877210 10 122346789999999999999999987 333222 222221
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH-----------hhHhhhccCC---CCCCCCc
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY-----------ENWSILSRPF---GVGAPGS 324 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~~~~~l---~~~~~gs 324 (1276)
+ +.... .......+...+...-..++.+|++|++..-.. .....+...+ .....+.
T Consensus 86 ~----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 D----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp H----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred H----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 1 11110 011111222223333345678999999953211 0112222222 1223455
Q ss_pred EEEEEecchhhhh-hc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHH
Q 037340 325 KIVVTTRNLGVAE-SM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTLG 397 (1276)
Q Consensus 325 ~ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 397 (1276)
.||.||..+.... .+ .-...+.+...+.++-.+++...+..... ..-......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666776532211 11 22346778888999999999887643221 11134566788888874 44444443
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00016 Score=81.24 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=101.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSI 264 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 264 (1276)
.+++|.+..++.+..++..+ ..+.+.++|+.|+||||+|+.++.... ...+. ...-++.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 35789998899998888543 233389999999999999999987311 11111 111122222111
Q ss_pred HHHhhcccCCCCCcHHHHHHHHHHHh------cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh-hhh
Q 037340 265 LRSIADDQIKDDDDLNSLQVKLKKQL------SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG-VAE 337 (1276)
Q Consensus 265 ~~~l~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~-v~~ 337 (1276)
.+...+.+.... .+.+-++|+|++..-.......+...+.......++|++|.... +..
T Consensus 90 --------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 90 --------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp --------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred --------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 222222222221 23467899999965444455555444433335567777765432 111
Q ss_pred hc-CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHH
Q 037340 338 SM-GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAA 393 (1276)
Q Consensus 338 ~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 393 (1276)
.+ .-...+.+.+++.++..+.+.+.+..... . --++..+.|++.++|.+--+
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 11 11246889999999988888765532221 1 11356778889999988643
No 186
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=2.4e-05 Score=75.33 Aligned_cols=114 Identities=13% Similarity=-0.030 Sum_probs=67.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
+++|+...++++.+.+.... ....-|.|+|.+|+|||++|+.+++.... ... ..+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~-~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG-EFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS-CCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC-CEE-EECCCCCcc---------
Confidence 57899999999998875431 12234689999999999999999874211 111 123 555433221
Q ss_pred HhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecc
Q 037340 267 SIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRN 332 (1276)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~ 332 (1276)
.. ....+.. ...-.|++|++..-.......+...+.......++|.||..
T Consensus 66 ----------~~---~~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQ---LNDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SC---HHHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hh---hhcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 00 1111111 13457899999776555555555544333445678877764
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.0021 Score=73.93 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=11.0
Q ss_pred CCCCCCcceeeecCC--CCceeeCC
Q 037340 826 VGQLLFLKHLEISGM--DGVKSVGP 848 (1276)
Q Consensus 826 l~~l~~L~~L~L~~~--~~~~~i~~ 848 (1276)
|.++.+|+.+.+..+ ..++.++.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~ 107 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGR 107 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECT
T ss_pred hhCCccCceEeecCCCCCeeeEech
Confidence 445555555555443 23444443
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.75 E-value=0.00022 Score=80.29 Aligned_cols=185 Identities=15% Similarity=0.065 Sum_probs=99.2
Q ss_pred CeeecchhhHHHHHHHHhcC----CC--CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRD----DL--RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++.+.+++... +. ......+-|.|+|++|+|||++|+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 46899999999998876311 00 01123356889999999999999999983 33222 222221 1
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHh-----------hHhhhccCCC---CCCCCcE
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYE-----------NWSILSRPFG---VGAPGSK 325 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~-----------~~~~~~~~l~---~~~~gs~ 325 (1276)
+ .... ...........+...-..++.+|++|++...... ....+...+. ....+..
T Consensus 120 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 1100 1111122222233333467889999999542210 0122222221 1224556
Q ss_pred EEEEecchh-----hhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHH
Q 037340 326 IVVTTRNLG-----VAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTLG 397 (1276)
Q Consensus 326 ilvTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 397 (1276)
||.||.... +.. .-...+.+...+.++-.+++......... .. -......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776442 222 23456778888888888888876543221 11 134567788888884 44444433
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.73 E-value=0.00038 Score=78.43 Aligned_cols=188 Identities=11% Similarity=0.013 Sum_probs=101.0
Q ss_pred CeeecchhhHHHHHHHHhcC----CC--CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRD----DL--RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++++.+++... +. ......+.|.|+|++|+|||++|+.+++. .... .+.++.+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~~-- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTSK-- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCCS--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhcc--
Confidence 46899999999998877420 00 00124567899999999999999999873 3222 233443321110
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCC----CCCCCc
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFG----VGAPGS 324 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~----~~~~gs 324 (1276)
. ...........+...-..++.+|++|++..-. ......+...+. ....+.
T Consensus 157 ------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 157 ------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp ------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred ------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 00111112222222234567899999993210 011222222221 112344
Q ss_pred EEEEEecchh-hhhhc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC-ChHHHHHHHH
Q 037340 325 KIVVTTRNLG-VAESM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG-LPLAAKTLGG 398 (1276)
Q Consensus 325 ~ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~ 398 (1276)
.||.||.... +...+ .....+.+...+.++..+++...+..... . --.+....|++.+.| .+-+|..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666665432 21111 22346778888888888888766533211 1 113566778888888 5555655543
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.73 E-value=0.00026 Score=79.05 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=86.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 291 (1276)
..+.+.|+|++|+||||||+.+++. ....-...++++.. .+...+...+... .... +...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~~------~~~~~~~~~~~~~------~~~~----~~~~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSAD------DFAQAMVEHLKKG------TINE----FRNMYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEHH------HHHHHHHHHHHHT------CHHH----HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEHH------HHHHHHHHHHHcC------cHHH----HHHHhc
Confidence 3567899999999999999999973 32211233455432 2333443333221 1111 222222
Q ss_pred CCcceEeecCCCccCH--hhHhhhccCCCC-CCCCcEEEEEecch---------hhhhhcCCCCceecCCCChhhHHHhh
Q 037340 292 GKKILLVLDDVWNENY--ENWSILSRPFGV-GAPGSKIVVTTRNL---------GVAESMGVDPAYQLKELSNDDCLCVL 359 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~--~~~~~~~~~l~~-~~~gs~ilvTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~l~ 359 (1276)
+.-+|++||+..-.. .....+...+.. ...|..||+||... .+..++.....+.+.+ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 367999999955322 122223222211 12456788887642 1222333345689999 999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHHcCCChH
Q 037340 360 TQISLGARDFNMHQSLKEVGEKIAMKCRGLPL 391 (1276)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1276)
.+.+..... ..+ .++...|++.+ |..-
T Consensus 176 ~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 176 KEKLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 887643221 111 45667788888 7654
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.73 E-value=0.00051 Score=76.00 Aligned_cols=187 Identities=14% Similarity=0.088 Sum_probs=100.6
Q ss_pred CeeecchhhHHHHHHHHhc----CCC--CCCCCccEEEEEecCCChHHHHHHHHhcchhh-hcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLR----DDL--RADDGFPVISINGMGGVGKTTLAQLVYNDDRV-QRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~ 258 (1276)
.+++|.+..++.+.+.+.- .+. ......+.|.++|++|+|||++|+.+++. . ...| +.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~~---~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--ANNSTF---FSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH--TTSCEE---EEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH--cCCCcE---EEEEhHHHHh--
Confidence 4688999988888877631 000 01123478899999999999999999973 2 1111 2233322110
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH-----------hhHhhhccCC---CCCCCCc
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY-----------ENWSILSRPF---GVGAPGS 324 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~~~~~l---~~~~~gs 324 (1276)
.. .......+...+...-..++.+|++|++..-.. .....+...+ .....+.
T Consensus 85 ------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 ------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp ------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred ------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 00 111222222333333346778999999954200 0011121111 1122455
Q ss_pred EEEEEecchhhh-hhc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHHH
Q 037340 325 KIVVTTRNLGVA-ESM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTLG 397 (1276)
Q Consensus 325 ~ilvTtr~~~v~-~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~~ 397 (1276)
.||.||..+... ..+ .-...+.+...+.++-.+++..+...... . .-......|++.+.|. +-.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-S---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566666543211 111 23356788888888888888876533211 1 1134567788899887 44455444
No 192
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=2.2e-05 Score=76.59 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=53.6
Q ss_pred CCeeEEEEeecCCCCcccccCCCCCccceeeeccCCCCcccCC--CCC----CCCCceeEeecCC-CCccccccccCCCC
Q 037340 1099 TKLTELMIWSCENLKALPNSMHNLTSLLHLEIGRCPSLVSFPE--DGF----PTNLQSLEFEDLK-ISKPLFQWGLNRFN 1171 (1276)
Q Consensus 1099 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~--~~~----~~~L~~L~l~~n~-~~~~~~~~~l~~l~ 1171 (1276)
..|++|++++|.....--..+.++++|++|++++|..+++-.- .+. +++|++|+|++|. +++.... .+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCC
Confidence 4799999999974433234567899999999999987765321 111 3478999999886 4433322 245566
Q ss_pred CcceEEecC
Q 037340 1172 SLRKLKISG 1180 (1276)
Q Consensus 1172 ~L~~L~Ls~ 1180 (1276)
+|++|+|++
T Consensus 140 ~L~~L~L~~ 148 (176)
T 3e4g_A 140 NLKYLFLSD 148 (176)
T ss_dssp TCCEEEEES
T ss_pred CCCEEECCC
Confidence 666666655
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.68 E-value=5.6e-05 Score=76.06 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=64.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhc
Q 037340 191 REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIAD 270 (1276)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 270 (1276)
.+..++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543321 235789999999999999999999832212111 233333 34444444444332
Q ss_pred ccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhH--hhhccCCCC-CCCCcEEEEEecc
Q 037340 271 DQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENW--SILSRPFGV-GAPGSKIVVTTRN 332 (1276)
Q Consensus 271 ~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~--~~~~~~l~~-~~~gs~ilvTtr~ 332 (1276)
... . .... .+. +.-+||+||++....+.| ..+...+.. ...|..+|+||..
T Consensus 89 ~~~---~---~~~~----~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD---T---KFLK----TVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC---S---HHHH----HHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH---H---HHHH----Hhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 211 1 1111 122 456999999973222223 222222211 1246788888874
No 194
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.67 E-value=1e-05 Score=91.80 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=41.5
Q ss_pred CCCceEEEEecCccccc-----cCcccccccccceeeccCCcccc-----cchhhhccccccEEecCCccch----hhhc
Q 037340 596 NLPRLRVFSLRGYCISK-----LPNEIGNLKHLRFLNLSGTSIQF-----LPDSINSLYNLYTILLEDCYWL----KKLC 661 (1276)
Q Consensus 596 ~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l----~~lp 661 (1276)
..+.|++|+|++|.++. ++..+..+++|++|+|++|.|.. ++..+...++|++|+|++|... ..++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 34555555555555542 33344455555555555555542 2344455555555555555221 1223
Q ss_pred cccCCccccceeeccccc
Q 037340 662 QDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 662 ~~i~~L~~L~~L~l~~~~ 679 (1276)
..+...++|++|++++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 333344555555555554
No 195
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.66 E-value=9e-06 Score=92.29 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=83.1
Q ss_pred CCcceeeccccccCCcchhhHHHHh-cCCCCceEEEEecCccccccC-ccc-----ccccccceeeccCCcccc-----c
Q 037340 569 KHLRTFLPMKLKYGGTFLAWSVLQM-LLNLPRLRVFSLRGYCISKLP-NEI-----GNLKHLRFLNLSGTSIQF-----L 636 (1276)
Q Consensus 569 ~~Lr~L~~~~~~~~~~~~~~~~~~~-l~~l~~Lr~L~L~~~~i~~lp-~~i-----~~L~~Lr~L~L~~~~i~~-----l 636 (1276)
++|+.|.+.++.. ....... ...+++|+.|+|++|.++... ..+ ....+|++|+|++|.|+. +
T Consensus 101 ~~L~~L~Ls~n~l-----~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQL-----DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCC-----CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCC-----CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 5778888777642 2222222 334457889999998886432 222 245778999999988763 5
Q ss_pred chhhhccccccEEecCCccch----hhhccccCCccccceeeccccccccc-----CccccCCccccccCCceEe
Q 037340 637 PDSINSLYNLYTILLEDCYWL----KKLCQDMGNLTKLHHLINFNVLSLKE-----MPKGFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 637 p~~i~~L~~L~~L~l~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~i~~L~~L~~L~~~~~ 702 (1276)
+..+..+++|++|+|++|..- ..++..+...++|++|++++|. +.. ++..+...++|++|++..+
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 566677888999999988422 2345667777889999998887 543 2233444566776655443
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=0.00022 Score=77.75 Aligned_cols=149 Identities=8% Similarity=-0.003 Sum_probs=91.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchh-hhcccccEEEEEEcC-CCCHHHHHHHHHHH
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDR-VQRHFQIKAWTCVSE-DFDVSRVTKSILRS 267 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 267 (1276)
|-++.++.+...+... ..+...++|+.|+||||+|+.+++... .........++..+. ...+.. .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455666777777432 267889999999999999999986311 111122334443332 222222 2233333
Q ss_pred hhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch-hhhhhcCCCCcee
Q 037340 268 IADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL-GVAESMGVDPAYQ 346 (1276)
Q Consensus 268 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~-~v~~~~~~~~~~~ 346 (1276)
+..... .+++-++|+|++..-.......+...+....+.+.+|++|.++ .+...+... .++
T Consensus 74 ~~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 322110 2456799999997766667777777766555677777777543 344444444 899
Q ss_pred cCCCChhhHHHhhhhcc
Q 037340 347 LKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 347 l~~L~~~~~~~l~~~~~ 363 (1276)
+.++++++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00026 Score=82.85 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=79.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhccc------c-cEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF------Q-IKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f------~-~~~wv~~~~~~~~~ 258 (1276)
..+|||+.+++.+...+... ...-+.|+|++|+|||++|+.+++ ++...+ + ..+.++.+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~--~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQ--QIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHH--HHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHH--HHHhCCCChhhcCCeEEEeeCC------
Confidence 35899999999999999653 234567999999999999999987 332211 1 11222222
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhh
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAES 338 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~ 338 (1276)
....+. ... .+...+...-..++.++++| . . .+....+...+.. ...++|.+|........
T Consensus 246 -------~~~~g~---~e~---~~~~~~~~~~~~~~~iLfiD-~-~--~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FED---RLKKVMDEIRQAGNIILFID-A-A--IDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CT---THHHHHHHHHTCCCCEEEEC-C-----------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHH---HHHHHHHHHHhcCCeEEEEe-C-c--hhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 011 12223333334567899999 1 1 2223334444432 23466666654432111
Q ss_pred c-------CCCCceecCCCChhhHHHhhhhcc
Q 037340 339 M-------GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 339 ~-------~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
. .-...+.++..+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 112368899999999999998654
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.55 E-value=7.8e-05 Score=76.73 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=61.6
Q ss_pred hhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhccc
Q 037340 193 KDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQ 272 (1276)
Q Consensus 193 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 272 (1276)
..++.+.+++..... ....+.+.|+|++|+|||+||+.+++. .......++|+++. .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345556666644321 112268899999999999999999983 33334456666543 333333332211
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhh--hcc-CCCCC-CCCcEEEEEecc
Q 037340 273 IKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSI--LSR-PFGVG-APGSKIVVTTRN 332 (1276)
Q Consensus 273 ~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~--~~~-~l~~~-~~gs~ilvTtr~ 332 (1276)
.........+. . .-+||+||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 1 2499999996643333321 211 11111 235578888874
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.54 E-value=0.0013 Score=76.33 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=100.2
Q ss_pred CeeecchhhHHHHHHHHhcC----CC--CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRD----DL--RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++.+.+++... .. ......+.|.|+|++|+|||++|+.+++. . ...-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~--~----~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE--A----NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH--C----CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--c----CCCCEEEEeHHH----
Confidence 56899999999998876310 00 01123578899999999999999999973 2 112233333221
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCCC---CCCCcE
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFGV---GAPGSK 325 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~~---~~~gs~ 325 (1276)
+. ....+. ....... .+...-..++.+|++|++..-. ......+...+.. ...+..
T Consensus 204 l~----~~~~g~---~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 LV----SKWLGE---SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HH----hhhcch---HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 1112222 2222224567899999995420 0112233333322 234566
Q ss_pred EEEEecchhhhh-hc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHH
Q 037340 326 IVVTTRNLGVAE-SM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTL 396 (1276)
Q Consensus 326 ilvTtr~~~v~~-~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 396 (1276)
||.||..+.... .+ .....+.+...+.++..++|..+...... .--......|++.+.|. +-.|..+
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 777776542211 11 22346778888888888888876533211 11134566788888884 4444443
No 200
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=4.7e-05 Score=80.62 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=55.2
Q ss_pred CCCCceEEEEecCcccccc---CcccccccccceeeccCCcccccchhhhccc--cccEEecCCccchhhhc-------c
Q 037340 595 LNLPRLRVFSLRGYCISKL---PNEIGNLKHLRFLNLSGTSIQFLPDSINSLY--NLYTILLEDCYWLKKLC-------Q 662 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp-------~ 662 (1276)
.+++.|+.|+|++|.|+.+ |..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4677888888888887765 35667888888888888888876 3455555 78888888885433333 1
Q ss_pred ccCCccccceee
Q 037340 663 DMGNLTKLHHLI 674 (1276)
Q Consensus 663 ~i~~L~~L~~L~ 674 (1276)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245666776665
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.00097 Score=73.30 Aligned_cols=184 Identities=12% Similarity=0.050 Sum_probs=97.7
Q ss_pred CeeecchhhHHHHHHHHhcCCC------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++.+.+++..... .-....+.+.|+|++|+||||+|+.+++. ....| +.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHhh---
Confidence 4689999999999887733100 00123568899999999999999999873 32222 2333322110
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhcc---CCCC--CCCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSR---PFGV--GAPG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~---~l~~--~~~g 323 (1276)
.. ...........+......++.+|++|++..-. ......+.. .++. .+.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 11111122222333334567899999994321 001111111 1111 1134
Q ss_pred cEEEEEecchh-----hhhhcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHH
Q 037340 324 SKIVVTTRNLG-----VAESMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTL 396 (1276)
Q Consensus 324 s~ilvTtr~~~-----v~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 396 (1276)
..||.||.... +..+ -...+.+...+.++..+++...+..... .--.+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 56666776532 2222 2245677777777877777765432211 1113456778888888775 45443
No 202
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=5.9e-05 Score=76.09 Aligned_cols=114 Identities=13% Similarity=0.032 Sum_probs=60.3
Q ss_pred ccCCCCcceeecccc-ccCCcchhhHHHHhcCCCCceEEEEecCccccc-----cCcccccccccceeeccCCcccc---
Q 037340 565 ICGVKHLRTFLPMKL-KYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISK-----LPNEIGNLKHLRFLNLSGTSIQF--- 635 (1276)
Q Consensus 565 ~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~~--- 635 (1276)
+...+.|++|.+.++ ...... ...+...+...+.|++|+|++|.|.. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g-~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHH-HHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344566666666554 321110 01122225566667777777766652 33444555666777777766652
Q ss_pred --cchhhhccccccEEec--CCccch----hhhccccCCccccceeeccccc
Q 037340 636 --LPDSINSLYNLYTILL--EDCYWL----KKLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 636 --lp~~i~~L~~L~~L~l--~~~~~l----~~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
+...+...++|++|+| ++|..- ..+...+...++|++|++++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4455566666777777 555221 1233334445666666666654
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.50 E-value=9.4e-05 Score=83.04 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=28.6
Q ss_pred cCCCCccEEEEecCCCCcCCCCCCCCCccEEEEecccCcccc---c--cCCCCccEEEEc
Q 037340 886 EGFPKLQMLSLVGCSELQGTLPERFPLLKKLVIVGCEQLLVT---I--QCLPVLSELHID 940 (1276)
Q Consensus 886 ~~~~~L~~L~l~~c~~L~~~~p~~l~~L~~L~i~~~~~l~~~---~--~~l~~L~~L~L~ 940 (1276)
..+|+|+.|.|++|..+. ..+...++|+.|.+..|...... + ..+|+|+.|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 356777777777653232 11223556666666655422111 1 246677777765
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.49 E-value=0.00065 Score=77.76 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=97.8
Q ss_pred CeeecchhhHHHHHHHHhcCCC------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++.+.+++..... ......+.|.|+|++|+|||++|+.+++ +....| +.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~~---~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNATF---FNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCEE---EEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCcE---EEeeHHHhhcc--
Confidence 4789999999999988732100 0012346789999999999999999987 322222 22322221110
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCC----CCCCCc
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFG----VGAPGS 324 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~----~~~~gs 324 (1276)
. ...........+...-.....+|+||++..-. ......+...+. ......
T Consensus 188 ~--------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 Y--------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred c--------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00111122222223334456799999994320 011112211111 111234
Q ss_pred EEEEEecchh-hhhhc--CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH-HHHHHH
Q 037340 325 KIVVTTRNLG-VAESM--GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL-AAKTLG 397 (1276)
Q Consensus 325 ~ilvTtr~~~-v~~~~--~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~ 397 (1276)
.||.||.... +...+ .....+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5565665432 21111 12245778888999998988876643221 1123466778888888544 554443
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.0014 Score=71.92 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=96.6
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.+++|.+..++++.+++...-. .+-...+.|.|+|++|+|||++|+.+++. ....| +.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~-----i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE-----EEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE-----EEEE----hH
Confidence 4689999998888887642100 01134567899999999999999999973 33222 2232 22
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHh--------------hHhhhccCCC--CCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYE--------------NWSILSRPFG--VGAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~--------------~~~~~~~~l~--~~~~ 322 (1276)
++. ....+.. . ......+.......+.+|++|++..-... ....+...+. ....
T Consensus 84 ~l~----~~~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 2221111 1 12233334444456789999999431100 0122222221 1123
Q ss_pred CcEEEEEecchhhh-hh-c---CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChH
Q 037340 323 GSKIVVTTRNLGVA-ES-M---GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPL 391 (1276)
Q Consensus 323 gs~ilvTtr~~~v~-~~-~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 391 (1276)
+..||.||...+.. .. . .-...+.+...+.++-.+++......... ....++ ..+++.+.|.|-
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCH
Confidence 56777777654322 11 1 12346788888888888888766533221 111222 345556666654
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.44 E-value=0.00014 Score=92.52 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=37.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++||+++++++.+.+... ..+.+.++|.+|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999998553 2344689999999999999999973
No 207
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.43 E-value=0.023 Score=64.81 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=39.5
Q ss_pred CCCeeEEEEeecCCCCcc-cccCCCCCccceeeeccCCCCcccCCCC--CCCCCceeEeecCCCCccccccccCCCCCcc
Q 037340 1098 STKLTELMIWSCENLKAL-PNSMHNLTSLLHLEIGRCPSLVSFPEDG--FPTNLQSLEFEDLKISKPLFQWGLNRFNSLR 1174 (1276)
Q Consensus 1098 ~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 1174 (1276)
+.+|+.+.+..+ +..+ ...+.++.+|+.+.+..+ +..++... .+.+|+.+.+.++.+...... .+.++.+|+
T Consensus 239 ~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~ 313 (379)
T 4h09_A 239 MKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPR-VFMDCVKLS 313 (379)
T ss_dssp CSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTT-TTTTCTTCC
T ss_pred CccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhh-hhcCCCCCC
Confidence 445555555432 2222 234455666666665432 44444332 245666666655554432222 366677777
Q ss_pred eEEecC
Q 037340 1175 KLKISG 1180 (1276)
Q Consensus 1175 ~L~Ls~ 1180 (1276)
.+.|..
T Consensus 314 ~i~lp~ 319 (379)
T 4h09_A 314 SVTLPT 319 (379)
T ss_dssp EEECCT
T ss_pred EEEcCc
Confidence 777654
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.43 E-value=0.00015 Score=70.74 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=48.1
Q ss_pred CccEEEEccCCcc--cccccccCCCccEEEEccCCCcccchhhhccC----CCCCceEEEecCCCCccccccccccCCCC
Q 037340 933 VLSELHIDGCRRV--VFSSLINFSSLKSIFLRDIANQVVLAGLFEQG----LPKLENLQICYVHEQTYLWQSETRLLHDI 1006 (1276)
Q Consensus 933 ~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~----l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 1006 (1276)
.|++|++++|... ....+.++++|++|+|++|..++...-..... .++|+.|++++|..++.. ....+..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~---Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK---GIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH---HHHHGGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH---HHHHHhcC
Confidence 3555555555411 12334556677777777776544321111112 135677777777655442 11234567
Q ss_pred CCcceEEEecCCCcccc
Q 037340 1007 SSLNQLQISGCSQLLSL 1023 (1276)
Q Consensus 1007 ~~L~~L~ls~c~~l~~~ 1023 (1276)
++|++|++++|+.+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCCEEEEESCTTCCCH
T ss_pred CCCCEEECCCCCCCCch
Confidence 88888888888777653
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=4.4e-05 Score=77.02 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=79.5
Q ss_pred HhcCCCCceEEEEecCc-cccc-----cCcccccccccceeeccCCccc-----ccchhhhccccccEEecCCccch---
Q 037340 592 QMLLNLPRLRVFSLRGY-CISK-----LPNEIGNLKHLRFLNLSGTSIQ-----FLPDSINSLYNLYTILLEDCYWL--- 657 (1276)
Q Consensus 592 ~~l~~l~~Lr~L~L~~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l--- 657 (1276)
..+...+.|+.|+|++| .+.. +...+....+|++|+|++|.|. .+.+.+...++|++|+|++|..-
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33888999999999999 8763 4566778899999999999986 35566777889999999999422
Q ss_pred -hhhccccCCccccceeec--cccccccc-----CccccCCccccccCCc
Q 037340 658 -KKLCQDMGNLTKLHHLIN--FNVLSLKE-----MPKGFGKLTCLLTLRR 699 (1276)
Q Consensus 658 -~~lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~i~~L~~L~~L~~ 699 (1276)
..+...+...++|++|++ ++|. +.. +...+...++|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEec
Confidence 235677888899999999 7676 432 2223344455666654
No 210
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.40 E-value=0.0034 Score=72.11 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=61.2
Q ss_pred ccCCCCCccceeeeccCCCCcccCCCC--CCCCCceeEeecCCCCccccccccCCCCCcceEEecCCCCCCccC-CCCCC
Q 037340 1117 NSMHNLTSLLHLEIGRCPSLVSFPEDG--FPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGGFPDLVSS-PRFPA 1193 (1276)
Q Consensus 1117 ~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~ 1193 (1276)
..|.++++|+.+.+.+. +..+.... .+++|+.+.+... + ..++...+.++.+|+.+.|..+...+... ...|+
T Consensus 259 ~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSSR-I-TELPESVFAGCISLKSIDIPEGITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred ceeeecccccEEecccc--cceecCcccccccccccccCCCc-c-cccCceeecCCCCcCEEEeCCcccEehHhHhhCCC
Confidence 35677778888777543 34454443 3567777777532 2 23334457777888888876643322211 12567
Q ss_pred CcCeeeccCCCCCccccC-CCCCCCCcCceeccCC
Q 037340 1194 SLTELKISDMPSLERLSS-IGENLTSLKFLDLDNC 1227 (1276)
Q Consensus 1194 ~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 1227 (1276)
+|+++.|.. .++.|.. .+.+|++|+++++.++
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 777777754 2555543 4567777777776654
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.34 E-value=9.5e-05 Score=70.87 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=33.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-+++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 357899999998888875421 12234779999999999999999873
No 212
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=2.4e-05 Score=82.87 Aligned_cols=98 Identities=19% Similarity=0.093 Sum_probs=68.7
Q ss_pred EEecCccccccCc----ccccccccceeeccCCccccc---chhhhccccccEEecCCccchhhhccccCCcc--cccee
Q 037340 603 FSLRGYCISKLPN----EIGNLKHLRFLNLSGTSIQFL---PDSINSLYNLYTILLEDCYWLKKLCQDMGNLT--KLHHL 673 (1276)
Q Consensus 603 L~L~~~~i~~lp~----~i~~L~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~--~L~~L 673 (1276)
++++.|....++. ...++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 4556664444332 225788999999999999865 467789999999999999 55555 3355555 99999
Q ss_pred ecccccccccCcc-------ccCCccccccCCceEe
Q 037340 674 INFNVLSLKEMPK-------GFGKLTCLLTLRRFVV 702 (1276)
Q Consensus 674 ~l~~~~~l~~lp~-------~i~~L~~L~~L~~~~~ 702 (1276)
++.+|.-...+|. .+..+++|+.|+...+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 9999983333442 2566777777765443
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0012 Score=73.55 Aligned_cols=179 Identities=17% Similarity=0.095 Sum_probs=97.6
Q ss_pred CeeecchhhHHHHHHHHhcC----CC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRD----DL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|-++.+++|.+.+.-. +. -+-...+-|.++|++|.|||.+|+++++ +....| +.|..+.-.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~sk- 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQK- 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhcc-
Confidence 46889999888887765320 00 0123456788999999999999999998 344333 33333322110
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC--------H------hhHhhhccCCC--CCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN--------Y------ENWSILSRPFG--VGAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~------~~~~~~~~~l~--~~~~ 322 (1276)
. .......+.+.+...-...+++|++|+++.-. . .....+...+. ....
T Consensus 222 --------------~-vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 222 --------------Y-IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp --------------S-TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred --------------c-cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 0 11122222233333334568899999984310 0 01122222222 1224
Q ss_pred CcEEEEEecchhhhh-----hcCCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 323 GSKIVVTTRNLGVAE-----SMGVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 323 gs~ilvTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
+-.||.||..++..+ .-.-+..+.+...+.++-.++|+.+.....- ...-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 556677776543321 1134567889888888888888766533211 11222 345677777753
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=0.002 Score=71.86 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSIL 265 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 265 (1276)
.+++|.+..++.+...+..... .+.....+.|+|++|+||||||+.++.. ....|. ..+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~-----~~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH-----VTSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE-----EEETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE-----EEechHh---------
Confidence 4578988888887777643210 1123467899999999999999999973 322221 1111100
Q ss_pred HHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC--------C----------CCcEEE
Q 037340 266 RSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG--------A----------PGSKIV 327 (1276)
Q Consensus 266 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~--------~----------~gs~il 327 (1276)
.....+... ...+ .++-++++|++..-.....+.+...+... + +...++
T Consensus 88 -----------~~~~~l~~~-~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAI-LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHH-HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHH-HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 000111111 1111 23456777877443222222221111000 0 011222
Q ss_pred -EEecchhhhhhcC--CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCChHHHH
Q 037340 328 -VTTRNLGVAESMG--VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAK 394 (1276)
Q Consensus 328 -vTtr~~~v~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 394 (1276)
.|++...+..... ....+.+++.+.++-.+++.+.+..... .--.+.+..|+++++|.|-.+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHH
Confidence 3444333322221 1234789999999999999877532221 1224678889999999996544
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.23 E-value=0.00093 Score=74.06 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=64.9
Q ss_pred eeecchhhHHHHHHHHhcCCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHH
Q 037340 187 KVYGREKDKEAIVELLLRDDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKS 263 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 263 (1276)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 467999988888888754311 01122357899999999999999999873 32222234555554332221 1111
Q ss_pred HHHHhhcccCC-CCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCC
Q 037340 264 ILRSIADDQIK-DDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPF 317 (1276)
Q Consensus 264 i~~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l 317 (1276)
+ ++..... .......+...+. ....-++++|++..........+...+
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l 143 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML 143 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence 1 1111100 0011112222222 234469999999665555555554433
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.21 E-value=0.00059 Score=79.64 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=99.4
Q ss_pred CeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.+++|.+..++++.+++...-. .+....+-|.|+|++|+|||++|+.+++ +....| +.++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEch------
Confidence 4689999999999887743100 0012345689999999999999999987 332222 233321
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc--------C---HhhHhhhccCCC--CCCCCcE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE--------N---YENWSILSRPFG--VGAPGSK 325 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~--------~---~~~~~~~~~~l~--~~~~gs~ 325 (1276)
++...+ ...........+.....+++.+|+||++..- . ......+...+. ....+..
T Consensus 273 ----~l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ----EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ----HHHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ----Hhhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111111 1111222334444455567789999999321 0 011122222222 1123456
Q ss_pred EEEEecchh-hhhhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC-hHHHHHH
Q 037340 326 IVVTTRNLG-VAESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL-PLAAKTL 396 (1276)
Q Consensus 326 ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLai~~~ 396 (1276)
||.||.... +...+ .-...+.+...+.++-.+++..++..... .....+ .++++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCCcHHHHHHH
Confidence 666766542 22222 22346888999999999999877532211 112222 4466666664 4444433
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0014 Score=74.30 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=91.5
Q ss_pred CCeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
-.++.|-++.+++|.+.+.-.-. -+-...+-|.++|++|+|||++|+++++ .....| +.|..+.-.+.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~~ 245 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVHK 245 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCCS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhcc
Confidence 35788999999888876632100 0123466789999999999999999998 343333 33333322110
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-----------C---HhhHhhhccCCC--CCC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-----------N---YENWSILSRPFG--VGA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-----------~---~~~~~~~~~~l~--~~~ 321 (1276)
. .......+.+.+...-...+++|++|++... + ......+...+. ...
T Consensus 246 ---------------~-~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 246 ---------------Y-LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp ---------------S-CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred ---------------c-cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 1112222233333333456789999998320 0 001122222221 122
Q ss_pred CCcEEEEEecchhhhh-hc----CCCCceecCCCCh-hhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 322 PGSKIVVTTRNLGVAE-SM----GVDPAYQLKELSN-DDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
.+-.||.||..++..+ .+ .-+..+.+..++. ++-.++|..+..... ....-++ ..|++.+.|.
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCCH----HHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHHCCCC
Confidence 4556777776543221 11 1234577765654 444556655443221 1112223 4566677764
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.17 E-value=0.0025 Score=80.17 Aligned_cols=152 Identities=15% Similarity=0.211 Sum_probs=84.4
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhc------ccccEEEE-EEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQR------HFQIKAWT-CVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~f~~~~wv-~~~~~~~~~ 258 (1276)
..++||+.+++++.+.|... ...-+.|+|.+|+|||++|+.+++. +.. .....+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~--l~~~~v~~~~~~~~~~~~~~~~l---- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR--IVQGDVPEVMADCTIYSLDIGSL---- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH--HHHTCSCGGGTTCEEEECCCC------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH--HHhCCCChhhcCCEEEEEcHHHH----
Confidence 46899999999999999543 3456789999999999999999873 211 11223321 11100
Q ss_pred HHHHHHHHHhhcccCCCCCcHHH-HHHHHHHHhcCCcceEeecCCCcc--------CHhh-HhhhccCCCCCCCCcEEEE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNS-LQVKLKKQLSGKKILLVLDDVWNE--------NYEN-WSILSRPFGVGAPGSKIVV 328 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlvlDdv~~~--------~~~~-~~~~~~~l~~~~~gs~ilv 328 (1276)
+.+.. .....+. +...+...-..++.+|++||+..- ...+ ...+...+.. .+.++|.
T Consensus 254 ---------~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~ 320 (758)
T 1r6b_X 254 ---------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIG 320 (758)
T ss_dssp ----------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEE
T ss_pred ---------hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEE
Confidence 00010 1122222 223333333446789999999542 1222 2233333332 2456666
Q ss_pred EecchhhhhhcC-------CCCceecCCCChhhHHHhhhhc
Q 037340 329 TTRNLGVAESMG-------VDPAYQLKELSNDDCLCVLTQI 362 (1276)
Q Consensus 329 Ttr~~~v~~~~~-------~~~~~~l~~L~~~~~~~l~~~~ 362 (1276)
+|.......... -...+.++..+.++..+++...
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 665443221111 1125778888888888877654
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.13 E-value=0.00082 Score=72.41 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=33.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 357899999988887765421 12245789999999999999999873
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0025 Score=72.34 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=97.5
Q ss_pred CCeeecchhhHHHHHHHHhcC----CC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRD----DL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
=.++.|-++.+++|.+.+.-. +. .+-..++-|.++|++|+|||++|+++++ .....| +.+..+.-.+.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~sk 254 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVDK 254 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCCS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhccc
Confidence 356889999888887765321 00 0123467889999999999999999998 343333 23333322110
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC--------------HhhHhhhccCCC--CCC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN--------------YENWSILSRPFG--VGA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------------~~~~~~~~~~l~--~~~ 321 (1276)
. .......+.......-...+++|++|++..-. ......+...+. ...
T Consensus 255 ---------------~-~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 255 ---------------Y-IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ---------------S-SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ---------------c-chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 11111222222333334678999999984310 001122222222 122
Q ss_pred CCcEEEEEecchhhhhh-c-C---CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 322 PGSKIVVTTRNLGVAES-M-G---VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~-~-~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
.+..||.||..++..+. + . -+..+.+...+.++-.++|+.+...... ...-++ ..|++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 45577888866543221 1 1 2346788877888878888766543221 112223 45667777753
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.10 E-value=0.0015 Score=81.88 Aligned_cols=147 Identities=18% Similarity=0.195 Sum_probs=80.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcc-----cccEEEEEEcCCCCHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQIKAWTCVSEDFDVSRV 260 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~ 260 (1276)
..+|||+.+++++...+... ...-+.++|++|+|||++|+.+++. +... ....-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~--l~~~~~p~~l~~~~~~~~~~------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDM------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHH--HhcCCCChhhcCCeEEEecc-------
Confidence 46899999999999999653 2344789999999999999999873 2111 00111111111
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhhhhc-
Q 037340 261 TKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVAESM- 339 (1276)
Q Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~~~~- 339 (1276)
+... .......+...+......++.+|++|.- .+....+...+.. ...++|.||.........
T Consensus 245 --------g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 --------GTKY--RGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred --------cccc--cchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhh
Confidence 0000 0011112233333344467889999921 2222334444432 245667666554421111
Q ss_pred ------CCCCceecCCCChhhHHHhhhhcc
Q 037340 340 ------GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 340 ------~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.-...+.++..+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112468999999999999998654
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.0002 Score=68.80 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...++|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999973
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=0.00041 Score=74.97 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=35.1
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|.+..++.+.+.+..-..+ +....+-+.|+|++|+|||++|+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 46899998888888765410000 001223477999999999999999987
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.02 E-value=0.0031 Score=72.80 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=95.3
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.++.++++.+.+..-..+ +....+-|.|+|++|+|||+||+.++.. ....| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 46899998877777654321000 1122345889999999999999999973 32222 23333221110
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH--------------hhHhhhccCCC--CCCCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY--------------ENWSILSRPFG--VGAPG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------------~~~~~~~~~l~--~~~~g 323 (1276)
. ...........+.......+.+|++|++..-.. .....+...+. ....+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 011112233344455556788999999943110 11222222221 11235
Q ss_pred cEEEEEecchhhhh-h-cC---CCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 324 SKIVVTTRNLGVAE-S-MG---VDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 324 s~ilvTtr~~~v~~-~-~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
..||.||..++... . .. -...+.+...+.++-.+++..++.... .....+ ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 56777776654322 1 11 233677888887777777776553221 111111 334777888876
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.01 E-value=0.00081 Score=73.66 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=36.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHH
Confidence 358899999999988875432 1234577999999999999999987
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.0063 Score=65.00 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=90.9
Q ss_pred CeeecchhhHHHHHHHHh---cCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHH
Q 037340 186 AKVYGREKDKEAIVELLL---RDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSR 259 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 259 (1276)
.+++|.+..++++.+.+. ....- +....+-+.|+|++|+||||+|+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 468899988877766542 11100 0112345889999999999999999873 22222 3332221100
Q ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH--------------hhHhhhccCCC--CCCCC
Q 037340 260 VTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY--------------ENWSILSRPFG--VGAPG 323 (1276)
Q Consensus 260 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~--------------~~~~~~~~~l~--~~~~g 323 (1276)
.. ...........+.........++++|++..-.. .....+...+. ....+
T Consensus 84 -----------~~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -----------MF--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------SC--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------Hh--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 111222333334444445667999999832100 11112211111 11234
Q ss_pred cEEEEEecchh-hhhhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCC-ChHHHH
Q 037340 324 SKIVVTTRNLG-VAESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRG-LPLAAK 394 (1276)
Q Consensus 324 s~ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~ 394 (1276)
..||.||...+ +.... .-...+.+...+.++-.+++........ ..... ....+++.+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc----cHHHHHHHcCCCCHHHHH
Confidence 56777776543 21111 1234567777777777777766543211 11111 12346667777 554333
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.96 E-value=0.0029 Score=73.87 Aligned_cols=93 Identities=9% Similarity=0.049 Sum_probs=57.6
Q ss_pred ceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEe----------c----c----hhhhhhcCCCCceecCCCChhhHH
Q 037340 295 ILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTT----------R----N----LGVAESMGVDPAYQLKELSNDDCL 356 (1276)
Q Consensus 295 ~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTt----------r----~----~~v~~~~~~~~~~~l~~L~~~~~~ 356 (1276)
-++++|++..-+.+....+...+...... .+|+.| . . +.+..++ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999776677777887776654444 344344 2 1 0122232 34789999999999
Q ss_pred HhhhhcccCCCCCCCCcchHHHHHHHHHHc-CCChHHHHH
Q 037340 357 CVLTQISLGARDFNMHQSLKEVGEKIAMKC-RGLPLAAKT 395 (1276)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~PLai~~ 395 (1276)
+++.+.+..... .--.+.+..|++.+ +|.|-.+..
T Consensus 373 ~iL~~~~~~~~~----~~~~~~~~~i~~~a~~g~~r~a~~ 408 (456)
T 2c9o_A 373 QIIKIRAQTEGI----NISEEALNHLGEIGTKTTLRYSVQ 408 (456)
T ss_dssp HHHHHHHHHHTC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC----CCCHHHHHHHHHHccCCCHHHHHH
Confidence 999876531111 11235567778877 777764443
No 228
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.96 E-value=0.0026 Score=70.39 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=36.9
Q ss_pred CeeecchhhHHHHHHHHhcC--CCC------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRD--DLR------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.+..++.+...+... ... .....+.+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999998887541 000 011245678999999999999999987
No 229
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.002 Score=72.72 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=95.9
Q ss_pred CeeecchhhHHHHHHHHhc----CCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLR----DDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|-++.+++|.+.+.- .+. -+-...+-|.++|++|+|||.+|+++++ +....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 4688999988888776421 000 0124567889999999999999999998 444333 3333322110
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC--------H------hhHhhhccCCC--CCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN--------Y------ENWSILSRPFG--VGAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------~------~~~~~~~~~l~--~~~~ 322 (1276)
.. .......+...+...-...+++|++|++.... . .....+...+. ....
T Consensus 282 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 11112222233333334668999999984310 0 01111222221 1223
Q ss_pred CcEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 323 GSKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 323 gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
+..||.||..++... .+ .-+..+.+...+.++-.++|+.+..... ....-++ ..|++.+.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCCH----HHHHHHCCCC
Confidence 445666775543221 11 2356788888888888888876653321 1112223 4567778775
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0019 Score=72.02 Aligned_cols=178 Identities=16% Similarity=0.119 Sum_probs=94.0
Q ss_pred CeeecchhhHHHHHHHHhc----CCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLR----DDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.++.+++|.+.+.- .+. .+-...+-|.++|++|.|||.+|+++++ +....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHhhh--
Confidence 4678999888888776532 100 0223457899999999999999999998 344333 2233221110
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC--------------HhhHhhhccCCC--CCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN--------------YENWSILSRPFG--VGAP 322 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~--------------~~~~~~~~~~l~--~~~~ 322 (1276)
.. .......+...+...-+..+++|++|++..-. ......+...+. ....
T Consensus 255 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 ------------KY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------cc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 00 11111222222223334567899999984310 001112222221 1223
Q ss_pred CcEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 323 GSKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 323 gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
+..||.||..++..+. + .-+..+.+...+.++-.++|..+..... ....-++ ..|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 4566777765443221 1 1234577887788888888876653321 1122223 4466677664
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0016 Score=73.83 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=94.1
Q ss_pred CCeeecchhhHHHHHHHHhc----CCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLR----DDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
=.++.|-++.+++|.+.+.- .+. .+-...+-|.++|++|+|||.+|+++++ +....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhhhh-
Confidence 35788999999988876421 100 0223467889999999999999999998 343333 2333322110
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCcc-------CH---h----hHhhhccCCCC--CC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNE-------NY---E----NWSILSRPFGV--GA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~-------~~---~----~~~~~~~~l~~--~~ 321 (1276)
.. .......+...+...-...+++|++|++..- .. . ....+...+.. ..
T Consensus 254 -------------~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 -------------MY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp -------------SC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred -------------cc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 00 1111111222222222345789999998321 00 0 11122222222 12
Q ss_pred CCcEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCC
Q 037340 322 PGSKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGL 389 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 389 (1276)
.+-.||.||..++..+. + .-+..+.+...+.++-.++|+.+...... ...-+ ...|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 34466667766443221 1 12356788888888888888765432111 11122 34567777764
No 232
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0029 Score=75.32 Aligned_cols=51 Identities=35% Similarity=0.455 Sum_probs=36.5
Q ss_pred CCeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|-+...+.+.+.+.-..........++.++|++|+||||+|+.++.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 346889888887776654321110122456899999999999999999987
No 233
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.048 Score=62.07 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=82.7
Q ss_pred CCCCCCeeEEEEeecCCCCcc-cccCCCCCccceeeeccCCCCcccCCCC--CCCCCceeEeecCCCCccccccccCCCC
Q 037340 1095 GLPSTKLTELMIWSCENLKAL-PNSMHNLTSLLHLEIGRCPSLVSFPEDG--FPTNLQSLEFEDLKISKPLFQWGLNRFN 1171 (1276)
Q Consensus 1095 ~~~~~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~l~ 1171 (1276)
+..+.+|+.+.+..+ +..+ ...+.++++|+.+.+..+ ++.+.... .+.+|+.+.+..+ + ..++...+.+++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-c-eecccccccccc
Confidence 334567777776543 3333 345678888888888654 56666553 3567888888654 2 233334578888
Q ss_pred CcceEEecCCCCCCccC--CCCCCCcCeeeccCCCCCccccC-CCCCCCCcCceeccCCCCCcccCCC
Q 037340 1172 SLRKLKISGGFPDLVSS--PRFPASLTELKISDMPSLERLSS-IGENLTSLKFLDLDNCPKLKYFSKQ 1236 (1276)
Q Consensus 1172 ~L~~L~Ls~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~ 1236 (1276)
+|+.+.+.++....... ...+.+|+.++|.. .++.|.. ++.+|.+|+++.|.. .++.+...
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEchh
Confidence 99999887643222211 12577888888865 3666653 457788888887753 35555544
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0025 Score=80.01 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred CeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTK 262 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 262 (1276)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 46899999999888887643210 1122236899999999999999999873 22212233445544321100
Q ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCHhhHhhhccCCCCC-----------CCCcEEEEEec
Q 037340 263 SILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENYENWSILSRPFGVG-----------APGSKIVVTTR 331 (1276)
Q Consensus 263 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~ilvTtr 331 (1276)
......+...++ ....-+|+||++.....+....+...+..+ ....+||+||.
T Consensus 565 -------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 000111111121 123458999999665555555554433221 13568888887
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.52 E-value=0.0071 Score=62.79 Aligned_cols=86 Identities=20% Similarity=0.105 Sum_probs=51.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhc-----------ccCCCCCcHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIAD-----------DQIKDDDDLN 280 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~~~~~~~~~ 280 (1276)
...++.|+|.+|+||||+|..++. ..-..++|++....++..++.. +.+..+. ..........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456999999999999999999986 1224677887766556554433 3332211 1111122223
Q ss_pred HHHHHHHHHhcCCcceEeecCCC
Q 037340 281 SLQVKLKKQLSGKKILLVLDDVW 303 (1276)
Q Consensus 281 ~~~~~l~~~l~~kr~LlvlDdv~ 303 (1276)
+....++.....+.-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34444445544446688999873
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.52 E-value=0.0061 Score=66.33 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++.+.++|++|+|||+||+.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456888999999999999999998
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.38 E-value=0.002 Score=69.06 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=45.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEE--cCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCV--SEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 290 (1276)
.+++.|+|++|+|||+||.+++.. .-..++|+++ .+..+. ...+.+...+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 467889999999999999999873 2224567777 332111 0134555566666666
Q ss_pred cCCcceEeecCCC
Q 037340 291 SGKKILLVLDDVW 303 (1276)
Q Consensus 291 ~~kr~LlvlDdv~ 303 (1276)
...+ +||+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6556 99999993
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.38 E-value=0.007 Score=67.51 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=35.0
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|+++.++.+...+... .-+.++|++|+|||++|+.+++
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 5789999999988888543 3478999999999999999987
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.34 E-value=0.0024 Score=69.98 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhh-cccccEEEEEE
Q 037340 191 REKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKAWTCV 251 (1276)
Q Consensus 191 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~ 251 (1276)
+...++.+.+++.... ....+.+.|+|++|+|||+||..+++. .. ..-..++++++
T Consensus 133 ~~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 3444555666665432 112467899999999999999999983 33 32234555554
No 240
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.33 E-value=0.013 Score=71.65 Aligned_cols=179 Identities=16% Similarity=0.111 Sum_probs=96.9
Q ss_pred CeeecchhhHHHHHHHHhc----CCC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLR----DDL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.++.+++|.+++.- .+. -+-..++-|.++|++|+|||+||+.+++. ...+| +.|+.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 4678999888888876531 110 02234678999999999999999999983 43333 3333221
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH-----------hhHhhhccCCCC--CCCCcE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY-----------ENWSILSRPFGV--GAPGSK 325 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~~~~~l~~--~~~gs~ 325 (1276)
+.. .. .......+...+....+..+.+|++|++..-.. .....+...+.. ...+..
T Consensus 274 -----l~s----k~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -----IMS----KL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HHS----SC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----hhc----cc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 111 00 122223334444444456789999999843110 011122221111 112344
Q ss_pred EEEEecchh-hhhhc----CCCCceecCCCChhhHHHhhhhcccCCCCCCCCcchHHHHHHHHHHcCCCh
Q 037340 326 IVVTTRNLG-VAESM----GVDPAYQLKELSNDDCLCVLTQISLGARDFNMHQSLKEVGEKIAMKCRGLP 390 (1276)
Q Consensus 326 ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 390 (1276)
||.||...+ +...+ .-.+.+++...+.++-.++|..+...... ....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 566665533 22222 12356888888888888888766532211 11222 345777777764
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.11 E-value=0.018 Score=67.06 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=35.4
Q ss_pred eeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 187 KVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.++|+++.++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888887543 35889999999999999999873
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.99 E-value=0.034 Score=64.59 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=81.5
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
-.+++|.++.++++.+....-..+ +-.-.+-+.|+|++|+||||||+.++.. ... ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~--~~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE--ARV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH--TTC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEehhHHHH--
Confidence 346899988777766654321000 0112334899999999999999999973 221 223333321100
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC----CcceEeecCCCccC----------Hhh----HhhhccCCCCC
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG----KKILLVLDDVWNEN----------YEN----WSILSRPFGVG 320 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlvlDdv~~~~----------~~~----~~~~~~~l~~~ 320 (1276)
.........++..++. ...++++|++..-. .+. ...+...+..+
T Consensus 103 ------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0011122233344432 34799999994210 111 12333223222
Q ss_pred --CCCcEEEEEecchhhhhh-c----CCCCceecCCCChhhHHHhhhhcc
Q 037340 321 --APGSKIVVTTRNLGVAES-M----GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 321 --~~gs~ilvTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
..+..|+.||..+++... + ..+..+.++..+.++-.+++..++
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 234456666666554321 1 234567888888888888887664
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.98 E-value=0.012 Score=74.74 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=37.7
Q ss_pred CeeecchhhHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.+..++.+...+...... .+.....+.|+|+.|+|||++|+.+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999988887543110 112235789999999999999999987
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.90 E-value=0.0083 Score=75.37 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=37.1
Q ss_pred CeeecchhhHHHHHHHHhcCCC---CCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDL---RADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 4588999999888887753211 0112234789999999999999999987
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.84 E-value=0.023 Score=62.76 Aligned_cols=85 Identities=21% Similarity=0.196 Sum_probs=56.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 287 (1276)
...++.|+|++|+||||||.+++.. ....=..++|++....++.. .++.++.... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999873 22222357788777666654 3444443221 13345566666666
Q ss_pred HHhc-CCcceEeecCCC
Q 037340 288 KQLS-GKKILLVLDDVW 303 (1276)
Q Consensus 288 ~~l~-~kr~LlvlDdv~ 303 (1276)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 6554 455689999883
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.79 E-value=0.018 Score=65.33 Aligned_cols=50 Identities=26% Similarity=0.254 Sum_probs=34.7
Q ss_pred CeeecchhhHHHHHHHHh----cCC--------------------CCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLL----RDD--------------------LRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~----~~~--------------------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.+..++.+...+. ... .........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357888888888877662 000 00011234688999999999999999987
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.77 E-value=0.04 Score=59.02 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=77.6
Q ss_pred CeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS 258 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 258 (1276)
.++.|.++.++++.+.+...-.. +-...+-+.|+|++|+||||||+.++.. ... ..+++....-.+..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLNMY 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHhhh
Confidence 46788888888887654210000 0011223899999999999999999873 221 12333322111000
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccCH-----------hhHhhhccCCCCC--CCCcE
Q 037340 259 RVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNENY-----------ENWSILSRPFGVG--APGSK 325 (1276)
Q Consensus 259 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~~-----------~~~~~~~~~l~~~--~~gs~ 325 (1276)
.......+.......-...+.++++|++..... .....+...+..+ ....-
T Consensus 85 ----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 85 ----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 000000111111111134567899999843100 0011112222221 12345
Q ss_pred EEEEecchhhhhhc-----CCCCceecCCCChhhHHHhhhhcc
Q 037340 326 IVVTTRNLGVAESM-----GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 326 ilvTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
++.+|..+++.+.. .-+..+.+...+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 56677665543321 234567788888888888887654
No 248
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.69 E-value=0.026 Score=59.93 Aligned_cols=50 Identities=30% Similarity=0.246 Sum_probs=32.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|.+..+.++.+....-... +-.-.+-+.|+|++|+||||||+.++.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 46889887766665543211000 001123389999999999999999987
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.025 Score=70.66 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=82.7
Q ss_pred CCeeecchhhHHHHHHHHhcC----CC---CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRD----DL---RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
-.+++|.+..++++.+++... +. -.-.....|.|+|++|+||||||+.++. .....| +.++...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~--~l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH--TTTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCcE---EEEEchH----
Confidence 356899999999998887430 00 0113346789999999999999999987 333222 2232211
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC-----------HhhHhhhccCCCC--CCCCc
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN-----------YENWSILSRPFGV--GAPGS 324 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~-----------~~~~~~~~~~l~~--~~~gs 324 (1276)
+.... .......+...+.........++++|++..-. ......+...+.. ...+.
T Consensus 274 ----------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ----------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 00000 11111222233333334467899999983210 0011112211111 11344
Q ss_pred EEEEEecchh-hhhhc----CCCCceecCCCChhhHHHhhhhcc
Q 037340 325 KIVVTTRNLG-VAESM----GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 325 ~ilvTtr~~~-v~~~~----~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.+|.||.... +...+ .-...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666665532 21111 112346777778888888887654
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.63 E-value=0.028 Score=60.69 Aligned_cols=51 Identities=29% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-.+++|.+..++++.+....-... +-.-.+-+.|+|++|+||||||+.++.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 346889888777666544221000 001122389999999999999999987
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.62 E-value=0.0072 Score=59.75 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=58.6
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC---CCHHHHHHHHHHHhhc--cc-----CCCC-------
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED---FDVSRVTKSILRSIAD--DQ-----IKDD------- 276 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--~~-----~~~~------- 276 (1276)
..|.|++-.|.||||+|-...- +...+=..+.++.+... .....+ ++.+.. .. .-..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 3456666677999999987776 44444344555554432 122233 333310 00 0000
Q ss_pred CcHHHHHHHHHHHhcCCcc-eEeecCCCcc---CHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 277 DDLNSLQVKLKKQLSGKKI-LLVLDDVWNE---NYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 277 ~~~~~~~~~l~~~l~~kr~-LlvlDdv~~~---~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
..........++.+.+.+| |||||++-.. .....+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1112223445555655555 9999998221 1122233333333333567899999984
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.56 E-value=0.035 Score=61.59 Aligned_cols=85 Identities=22% Similarity=0.162 Sum_probs=55.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 287 (1276)
..+++.|+|.+|+||||||.+++.. ....=..++|++....++.. .++.++.... ....+.++..+.++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999999863 22223467898887766653 2344443211 02234555555555
Q ss_pred HHhc-CCcceEeecCCC
Q 037340 288 KQLS-GKKILLVLDDVW 303 (1276)
Q Consensus 288 ~~l~-~kr~LlvlDdv~ 303 (1276)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5553 346699999983
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.56 E-value=0.036 Score=61.67 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=55.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 287 (1276)
..+++.|.|.+|+||||||.+++.. ....-..++|++....++.. .++.++.... ....+.++..+.++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 4568999999999999999998873 22223468899988776654 2344433211 12345666666666
Q ss_pred HHhc-CCcceEeecCC
Q 037340 288 KQLS-GKKILLVLDDV 302 (1276)
Q Consensus 288 ~~l~-~kr~LlvlDdv 302 (1276)
+..+ ...-+||+|.+
T Consensus 146 ~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHTTTCCSEEEEECT
T ss_pred HHHhcCCCCEEEEeCh
Confidence 6654 34559999988
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.46 E-value=0.0071 Score=61.92 Aligned_cols=114 Identities=10% Similarity=-0.050 Sum_probs=62.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC-CCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK-DDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l 290 (1276)
...++.|+|..|+||||++..+.+ +...+-..++.+..... .. ....++..++..... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 357899999999999999998887 34333333444433322 11 112333333322110 1123344455555544
Q ss_pred cCCcc-eEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 291 SGKKI-LLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 291 ~~kr~-LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
.+.++ +||+|.+..-+.+..+.+.. +.. .|-.||+|-++.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 44444 99999995433333333322 222 267899999853
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.42 E-value=0.036 Score=59.04 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=53.5
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcc--cccEEEEEEcCCCCHHHHHHHHHHHhhcccCC----CCCcHHHH-HHHHH
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRH--FQIKAWTCVSEDFDVSRVTKSILRSIADDQIK----DDDDLNSL-QVKLK 287 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~~l~ 287 (1276)
++-|.|++|+||||||.+++.. .... =..++||+..+.++.. .++.++..... ...+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999998873 3333 2457899888877764 25666543221 23455555 33333
Q ss_pred HH--h-cCCcceEeecCCC
Q 037340 288 KQ--L-SGKKILLVLDDVW 303 (1276)
Q Consensus 288 ~~--l-~~kr~LlvlDdv~ 303 (1276)
.. + +++.-++|+|-+-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 2 3566799999983
No 256
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.25 E-value=0.044 Score=60.87 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
....++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. +++.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 3457999999999999999999886321211 124678998888777765543 34444
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.07 E-value=0.021 Score=58.13 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|++.++++.+.+.... .....+|+|+|..|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888886542 24467999999999999999999876
No 258
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.06 E-value=0.057 Score=59.90 Aligned_cols=84 Identities=23% Similarity=0.152 Sum_probs=53.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 287 (1276)
..+++.|.|.+|+||||||.+++.. ....-..++|++....++... +..++.... ....+.++..+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 4579999999999999999998873 222234688998877776432 344433211 02234455555555
Q ss_pred HHhc-CCcceEeecCC
Q 037340 288 KQLS-GKKILLVLDDV 302 (1276)
Q Consensus 288 ~~l~-~kr~LlvlDdv 302 (1276)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4442 44569999998
No 259
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.03 E-value=0.025 Score=52.47 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=41.3
Q ss_pred EEEecCcccc--ccCcccccccccceeeccCCcccccchh-hhccccccEEecCCcc
Q 037340 602 VFSLRGYCIS--KLPNEIGNLKHLRFLNLSGTSIQFLPDS-INSLYNLYTILLEDCY 655 (1276)
Q Consensus 602 ~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 655 (1276)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6788888888 8886653 4688999999999988765 6778888888888873
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.01 E-value=0.049 Score=56.97 Aligned_cols=116 Identities=16% Similarity=0.003 Sum_probs=60.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC-------------------
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI------------------- 273 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------- 273 (1276)
..+++|+|.+|+|||||++.++... ...-..++|+.... ...++...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 4689999999999999999998632 22223456655433 3444433332 3321100
Q ss_pred ---CCCCcHHHHHHHHHHHhc-CCc--ceEeecCCCcc---CHhhHhhhccCCCC--CCCCcEEEEEecch
Q 037340 274 ---KDDDDLNSLQVKLKKQLS-GKK--ILLVLDDVWNE---NYENWSILSRPFGV--GAPGSKIVVTTRNL 333 (1276)
Q Consensus 274 ---~~~~~~~~~~~~l~~~l~-~kr--~LlvlDdv~~~---~~~~~~~~~~~l~~--~~~gs~ilvTtr~~ 333 (1276)
....+..++...+.+.+. .+. .++|+|....- +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 011144555555555442 233 39999998521 22222222222211 12477888888764
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.87 E-value=0.17 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+++|+|+.|.|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 262
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.87 E-value=0.039 Score=58.10 Aligned_cols=56 Identities=11% Similarity=0.050 Sum_probs=36.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|+|++|+||||||..++....... .-..++|+.....++..++. .+++.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 456999999999999999999986321111 12467888776655554432 334444
No 263
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.82 E-value=0.24 Score=55.17 Aligned_cols=158 Identities=10% Similarity=-0.058 Sum_probs=96.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH-Hh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKK-QL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~-~l 290 (1276)
-.++..++|..|.||++.|+.+.+.. ....|+....+.+....+ ..++.+.+.. -+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVA-AAQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHH-HHHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHH-HhCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCC
Confidence 35789999999999999999988732 122343222222222222 2233322221 23
Q ss_pred cCCcceEeecCCCc-cCHhhHhhhccCCCCCCCCcEEEEEecc-------hhhhhhcC-CCCceecCCCChhhHHHhhhh
Q 037340 291 SGKKILLVLDDVWN-ENYENWSILSRPFGVGAPGSKIVVTTRN-------LGVAESMG-VDPAYQLKELSNDDCLCVLTQ 361 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~-~~~~~~~~~~~~l~~~~~gs~ilvTtr~-------~~v~~~~~-~~~~~~l~~L~~~~~~~l~~~ 361 (1276)
-+++-++|+|++.. .....++.+...+....+++.+|+++.. ..+...+. ....++..+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 45677889999865 4445666676666554567777776643 23333332 335788999999998877776
Q ss_pred cccCCCCCCCCcchHHHHHHHHHHcCCChHHHHHH
Q 037340 362 ISLGARDFNMHQSLKEVGEKIAMKCRGLPLAAKTL 396 (1276)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 396 (1276)
.+...+- .--++.+..+++.++|...++...
T Consensus 154 ~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 6533221 122467788999999988877643
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.76 E-value=0.06 Score=59.36 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=53.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcc----cccEEEEEEcCCCCHHHHHHHHHHHhhcccC--------CCCCcH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKAWTCVSEDFDVSRVTKSILRSIADDQI--------KDDDDL 279 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~ 279 (1276)
...++.|+|.+|+||||+|.+++........ -..++|++....++..++.. +++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 4579999999999999999998863211111 24678998888777766543 3444433210 011122
Q ss_pred H---HHHHHHHHHhc--CCcceEeecCC
Q 037340 280 N---SLQVKLKKQLS--GKKILLVLDDV 302 (1276)
Q Consensus 280 ~---~~~~~l~~~l~--~kr~LlvlDdv 302 (1276)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 34568888887
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.12 Score=55.60 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=43.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhc-ccccEEEEEEcCCCCHHHHHHHHHHHh------hcccCCCCCcHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQR-HFQIKAWTCVSEDFDVSRVTKSILRSI------ADDQIKDDDDLNSLQ 283 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~~~~~~~~~~~~~~ 283 (1276)
....+|+|+|..|+||||||+.+........ ....+..|+...-+-.......+.... .........+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4567999999999999999998886322211 122344445443333333334433221 100112444556666
Q ss_pred HHHHHHhcC
Q 037340 284 VKLKKQLSG 292 (1276)
Q Consensus 284 ~~l~~~l~~ 292 (1276)
+.+...-.+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666555444
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.11 E-value=0.37 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.10 E-value=0.11 Score=56.22 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++++|+|.+|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999886
No 268
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.04 E-value=0.076 Score=58.61 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=39.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhc---------cc-----ccEEEEEEcCCCCHHHHHHHHHHHhh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQR---------HF-----QIKAWTCVSEDFDVSRVTKSILRSIA 269 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1276)
...++.|+|.+|+|||++|.+++....... .. ..++|++....++..++.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999999886321111 11 4678888888777766653 344443
No 269
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.86 E-value=0.21 Score=54.61 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=37.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|.|.+|+||||+|.+++.+..... ..++|++.. .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 457899999999999999999986432222 466776654 55666766666543
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.60 E-value=0.094 Score=57.37 Aligned_cols=34 Identities=21% Similarity=0.014 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 197 AIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 197 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++++.+..- .....++|+|..|+|||||++.+.+
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHH
Confidence 445555432 3456889999999999999999886
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.48 E-value=0.16 Score=54.96 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=47.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHH--HHHHHHHHHhhcccC--CCCCcHHH-HHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVS--RVTKSILRSIADDQI--KDDDDLNS-LQVKL 286 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~--~~~~~~~~-~~~~l 286 (1276)
...+|+|+|.+|+||||++..++.. ....-..+.++... .+... +-+...++..+.+.. ....+... ..+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH--HHhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999999873 33222234444432 33222 112333343332211 01122222 23345
Q ss_pred HHHhcCCcceEeecCCC
Q 037340 287 KKQLSGKKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l~~kr~LlvlDdv~ 303 (1276)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55555555588888663
No 272
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.43 E-value=0.038 Score=54.88 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.41 E-value=0.05 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-.++|.+.+... .....+|+|+|+.|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345555555432 23567999999999999999999886
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.36 E-value=0.044 Score=55.14 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|++|+||||+++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999987
No 275
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.26 E-value=0.18 Score=52.42 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=30.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhh---c-ccccEEEEEEcCCCCH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQ---R-HFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~ 257 (1276)
...+++|+|+.|+|||||++.++...... . .-..++|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 45799999999999999999997521111 0 1234677765544333
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.25 E-value=0.066 Score=57.68 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++++..+..... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 334567899999999999999999876
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.18 E-value=0.043 Score=55.66 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 278
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.18 E-value=0.041 Score=54.52 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=18.7
Q ss_pred cEEEEEecCCChHHHHHHHH
Q 037340 214 PVISINGMGGVGKTTLAQLV 233 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v 233 (1276)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999998
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.17 E-value=0.041 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=20.2
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 280
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.17 E-value=0.13 Score=56.99 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=32.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhccc----ccEEEEEEcCCCCHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHF----QIKAWTCVSEDFDVS 258 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~ 258 (1276)
....++.|+|.+|+|||||+..++......... ..++|++....+...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 346799999999999999999998632111111 234888776655433
No 281
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.00 E-value=0.08 Score=57.70 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=32.3
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 189 YGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
|+.+.-.+++.+.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 445556666776664321 223456789999999999999999987
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.93 E-value=0.68 Score=52.39 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999988876
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.92 E-value=0.057 Score=53.66 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.89 E-value=0.082 Score=57.43 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=32.7
Q ss_pred ecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 189 YGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 189 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|....+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455555666665555442 234567999999999999999998875
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.80 E-value=0.05 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.72 E-value=0.062 Score=54.51 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 287
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.69 E-value=0.047 Score=68.18 Aligned_cols=51 Identities=25% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCeeecchhhHHHHHHHHhcCCCC-------CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 185 EAKVYGREKDKEAIVELLLRDDLR-------ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-.+++|.+..++.+.+.+.-.... +-...+.+.++|++|+||||||+.++.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 346789988888888776421110 112345688999999999999999997
No 288
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.67 E-value=0.057 Score=58.82 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=28.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE 253 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 253 (1276)
++.+||+|.|-|||||||.|..+.. .....=..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 4578999999999999999988776 2332223455666653
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.59 E-value=0.055 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999986
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.56 E-value=0.21 Score=56.27 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=36.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhc----ccccEEEEEEcCCCCHHHHHHHHHHHhh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKAWTCVSEDFDVSRVTKSILRSIA 269 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 269 (1276)
...++.|+|.+|+|||||+..++-...... .-..++|++....++..++ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 457999999999999999997753111111 2245788877766655543 33555544
No 291
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.52 E-value=0.45 Score=58.36 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=78.8
Q ss_pred CCeeecchhhHHHHHHHHhcCCC-------CCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCH
Q 037340 185 EAKVYGREKDKEAIVELLLRDDL-------RADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDV 257 (1276)
Q Consensus 185 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 257 (1276)
-.++.|.++.++++.+.+.-.-. .+-...+-|.++|++|.|||.+|+++++. ....| +.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEecc----
Confidence 34677888888888776532110 01233456789999999999999999983 33322 23321
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCCcceEeecCCCccC----------Hh----hHhhhccCCCC--CC
Q 037340 258 SRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGKKILLVLDDVWNEN----------YE----NWSILSRPFGV--GA 321 (1276)
Q Consensus 258 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlvlDdv~~~~----------~~----~~~~~~~~l~~--~~ 321 (1276)
. +++... .......+.+.+...-+..+++|++|++..-- .. ...++...+.. ..
T Consensus 545 ~----~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 545 P----ELLTMW------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp H----HHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred c----hhhccc------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1 111111 22233334444444445678999999984310 00 11222222221 11
Q ss_pred CCcEEEEEecchhhhh-hc----CCCCceecCCCChhhHHHhhhhcc
Q 037340 322 PGSKIVVTTRNLGVAE-SM----GVDPAYQLKELSNDDCLCVLTQIS 363 (1276)
Q Consensus 322 ~gs~ilvTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~l~~~~~ 363 (1276)
.+--||.||..++... .+ .-++.+.+...+.++-.++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2333444554332211 11 234567777667777777887665
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.49 E-value=0.051 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 293
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.48 E-value=0.068 Score=54.56 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4579999999999999999999863
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.45 E-value=0.066 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.43 E-value=0.087 Score=55.71 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 194 DKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++...+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445444444322 334567899999999999999999876
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.35 E-value=0.081 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.35 E-value=0.42 Score=54.26 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=32.7
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC-HHHHHHHHH
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD-VSRVTKSIL 265 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~ 265 (1276)
..++|+|..|+|||||+..+..+... ..-+..+++-+++..+ ..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 46899999999999999999874222 1223455666665542 334444443
No 298
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.32 E-value=0.07 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.22 E-value=0.076 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999886
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.22 E-value=0.064 Score=54.55 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.14 E-value=0.11 Score=57.48 Aligned_cols=111 Identities=12% Similarity=0.155 Sum_probs=61.6
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSGK 293 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~k 293 (1276)
.+++|+|+.|.||||+.+.+... +.......+ +.+.++.... .......+.... .........+.+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~--~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVNQRE--VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEEEEE--BTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhccccceeeee--eccccCCHHHHHHHHhhhC
Confidence 48999999999999999988762 222212222 2232221110 000000000000 0111123455788889888
Q ss_pred cceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhh
Q 037340 294 KILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVA 336 (1276)
Q Consensus 294 r~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 336 (1276)
+=+|++|++.+ .+.++.+.... ..|..|++||...+.+
T Consensus 197 PdvillDEp~d--~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRD--LETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCC--HHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999964 45555544332 2466688888875554
No 302
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.12 E-value=0.55 Score=51.29 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999986
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.10 E-value=0.1 Score=58.74 Aligned_cols=49 Identities=29% Similarity=0.339 Sum_probs=35.6
Q ss_pred eeecchhhHHHHHHHHhcC-------C--CCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 187 KVYGREKDKEAIVELLLRD-------D--LRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 187 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4689998888888877210 0 00112345789999999999999999987
No 304
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.05 E-value=0.074 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 305
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.00 E-value=0.081 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....|+|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 306
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.98 E-value=0.17 Score=50.23 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCCCceEEEEecCc-cccc-----cCcccccccccceeeccCCccc-----ccchhhhccccccEEecCCccc----hhh
Q 037340 595 LNLPRLRVFSLRGY-CISK-----LPNEIGNLKHLRFLNLSGTSIQ-----FLPDSINSLYNLYTILLEDCYW----LKK 659 (1276)
Q Consensus 595 ~~l~~Lr~L~L~~~-~i~~-----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~----l~~ 659 (1276)
.+-+.|+.|+|+++ .|.. +-+.+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++|.. ...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34444555555543 3331 2233344445555555555543 2233344444555555555521 112
Q ss_pred hccccCCccccceeeccc
Q 037340 660 LCQDMGNLTKLHHLINFN 677 (1276)
Q Consensus 660 lp~~i~~L~~L~~L~l~~ 677 (1276)
+-+.+..-+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 223333344455555543
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.98 E-value=0.067 Score=54.45 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|+|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 308
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.96 E-value=0.064 Score=53.08 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.6
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
|.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.96 E-value=0.067 Score=53.19 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46789999999999999999886
No 310
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.90 E-value=0.074 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 311
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.90 E-value=0.79 Score=52.21 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 194 DKEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 194 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
-.+++.+++.....+ .....++|.|+|.+|+||||+|..++.
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666432110 123568999999999999999999987
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.87 E-value=0.069 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 313
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.77 E-value=0.11 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999886
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.76 E-value=0.09 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 315
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.75 E-value=0.091 Score=53.82 Aligned_cols=24 Identities=46% Similarity=0.375 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999886
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.74 E-value=0.14 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 317
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.72 E-value=0.53 Score=51.40 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=37.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|.|.+|+||||+|..++.+... .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3468999999999999999999874322 2234556544 456777777776554
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.70 E-value=0.08 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.68 E-value=0.095 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.60 E-value=0.094 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 321
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.59 E-value=0.98 Score=49.13 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...++|+|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999987
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.57 E-value=0.089 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999974
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.57 E-value=0.16 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|.|.|++|+||||+|+.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.54 E-value=0.1 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.53 E-value=0.073 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.0
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.|.|.|++|+||||+|+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 326
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.53 E-value=0.1 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999886
No 327
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.52 E-value=0.083 Score=55.77 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=20.2
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|.|+|+.|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 328
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.50 E-value=0.088 Score=51.57 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 329
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.46 E-value=0.098 Score=51.63 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 330
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.39 E-value=0.082 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36789999999999999999876
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.35 E-value=0.39 Score=64.45 Aligned_cols=86 Identities=23% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l 286 (1276)
...++|.|+|++|+|||+||.++... ...+=..++|+++.+.++... ++.++.+.. ......++..+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 35679999999999999999999873 333334577888887776655 334432110 0223445555555
Q ss_pred HHHh-cCCcceEeecCCC
Q 037340 287 KKQL-SGKKILLVLDDVW 303 (1276)
Q Consensus 287 ~~~l-~~kr~LlvlDdv~ 303 (1276)
++.. +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 3567799999983
No 332
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.33 E-value=0.095 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.0
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999875
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.29 E-value=0.095 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 334
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.29 E-value=0.23 Score=45.91 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=32.7
Q ss_pred eeeeccCCCCc--ccCCCCCCCCCceeEeecCCCCccccccccCCCCCcceEEecCC
Q 037340 1127 HLEIGRCPSLV--SFPEDGFPTNLQSLEFEDLKISKPLFQWGLNRFNSLRKLKISGG 1181 (1276)
Q Consensus 1127 ~L~l~~c~~l~--~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~Ls~~ 1181 (1276)
.++.+++. ++ .+|. +++++|+.|+|++|.+....+. .+..+++|+.|+|++|
T Consensus 12 ~v~Cs~~~-L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPT-AFPVDTTELVLTGNNLTALPPG-LLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSC-CCTTTSCS-CCCTTCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCSS
T ss_pred EEEeCCCC-CccccCCC-CCCcCCCEEECCCCcCCccChh-hhhhccccCEEEecCC
Confidence 45555544 55 6664 3566777777777777655443 2666777777777774
No 335
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.26 E-value=0.48 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++.|+|.+|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 336
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.25 E-value=0.076 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.0
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 337
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.24 E-value=0.86 Score=52.10 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=29.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD 256 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1276)
...+++|+|..|+|||||++.++.- .+. ....+++.....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl--l~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ--FEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH--HHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH--hhh-cCCeEEEecCcccc
Confidence 4679999999999999999999863 222 23445554344443
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.22 E-value=0.12 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.2
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.18 E-value=0.1 Score=55.46 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 340
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.14 E-value=0.17 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 341
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.14 E-value=0.47 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++++|+|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.12 E-value=0.11 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 343
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.09 E-value=0.098 Score=53.24 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 344
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.01 E-value=0.55 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.++|.+|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999886
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.99 E-value=0.11 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 346
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.97 E-value=0.12 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999886
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.97 E-value=0.13 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 348
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.95 E-value=0.23 Score=49.31 Aligned_cols=113 Identities=16% Similarity=0.072 Sum_probs=75.4
Q ss_pred cCCCCcceeecccc-ccCCcchhhHHHHhcCCCCceEEEEecCccccc-----cCcccccccccceeeccCCccc-----
Q 037340 566 CGVKHLRTFLPMKL-KYGGTFLAWSVLQMLLNLPRLRVFSLRGYCISK-----LPNEIGNLKHLRFLNLSGTSIQ----- 634 (1276)
Q Consensus 566 ~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~Lr~L~L~~~~i~----- 634 (1276)
.+-+.|+.|.+.++ ..... .-..+.+.+..-..|+.|+|++|.|.. +-+.+..-+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~-ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKE-RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHH-HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHH-HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45678888888764 32110 001233447888899999999999873 4456667789999999999987
Q ss_pred ccchhhhccccccEEecCCccc--hh-----hhccccCCccccceeeccccc
Q 037340 635 FLPDSINSLYNLYTILLEDCYW--LK-----KLCQDMGNLTKLHHLINFNVL 679 (1276)
Q Consensus 635 ~lp~~i~~L~~L~~L~l~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 679 (1276)
.+-+.+..-+.|++|+|++|.. +. .+-+.+..-+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445566667899999986522 11 233344455678888776554
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.94 E-value=0.14 Score=55.52 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 350
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.91 E-value=0.13 Score=49.38 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.90 E-value=0.17 Score=50.14 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..+..++... +..+.+.|+|++|+||||+|..+++
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHH
Confidence 45566666321 2345799999999999999998887
No 352
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.90 E-value=0.091 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 353
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.89 E-value=0.12 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|+|+.|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 354
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.82 E-value=0.11 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|+|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 355
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.81 E-value=0.25 Score=49.69 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 356
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.80 E-value=0.12 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...++|.|.|++|+||||.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998886
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.77 E-value=0.12 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|.|++|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.75 E-value=0.12 Score=53.57 Aligned_cols=22 Identities=45% Similarity=0.762 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 359
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.71 E-value=0.14 Score=52.97 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 192 EKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 192 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
++..+.+.+.+.. ...+.|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344455555432 24678999999999999999998864
No 360
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.71 E-value=0.13 Score=55.99 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999999886
No 361
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.70 E-value=0.91 Score=51.35 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHHH
Q 037340 197 AIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILRS 267 (1276)
Q Consensus 197 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 267 (1276)
+.++.|..- .+..-++|.|..|+|||+|+.++.++. .+.+-+.++++-+.+.. .+.++.+++.+.
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 355665432 234568999999999999999998731 22333556777777654 344566666553
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.68 E-value=0.11 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999886
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.67 E-value=0.086 Score=52.52 Aligned_cols=23 Identities=48% Similarity=0.564 Sum_probs=16.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 364
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.62 E-value=0.14 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999886
No 365
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.61 E-value=0.65 Score=53.78 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=35.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
...++.|.|.+|+||||+|..++.+.... .-..++|++.. .+..++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHHH
Confidence 45689999999999999999998743221 11256776654 345566655543
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.59 E-value=0.13 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.55 E-value=0.12 Score=51.55 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 368
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.52 E-value=0.13 Score=54.44 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999876
No 369
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.52 E-value=0.75 Score=50.32 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 196 EAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 196 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-++++.+..- .+..-++|+|.+|+|||+|+.++.+.
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHH
Confidence 3566666432 33457899999999999999999873
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.52 E-value=0.14 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.49 E-value=0.14 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 372
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.47 E-value=0.78 Score=54.00 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=37.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|.|.+|+||||+|.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 45689999999999999999998742221 123567766544 4667776665544
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.47 E-value=0.14 Score=53.94 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.44 E-value=0.13 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|.|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 375
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.35 E-value=0.79 Score=52.88 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=37.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSI 268 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 268 (1276)
...++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 45689999999999999999998743221 12356776554 45667776665543
No 376
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.29 E-value=0.13 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.17 E-value=0.2 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.15 E-value=0.14 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 379
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.12 E-value=0.31 Score=56.65 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+.+.|.|.+|+||||++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999988873
No 380
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.00 E-value=0.17 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.691 Sum_probs=21.0
Q ss_pred CccEEEEEecCCChHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVY 234 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~ 234 (1276)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 381
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.95 E-value=0.14 Score=51.48 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 382
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.92 E-value=0.13 Score=57.70 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.2
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|.+..++.+........ ..-+.|+|++|+|||++|+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 358999886666544443221 12388999999999999999987
No 383
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.88 E-value=0.25 Score=56.06 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=35.7
Q ss_pred CeeecchhhHHHHHHHHhcC--------CCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRD--------DLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46789888888887666321 000111345688999999999999999987
No 384
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.87 E-value=0.16 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.78 E-value=0.32 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998886
No 386
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.76 E-value=0.8 Score=54.46 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=54.7
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHh---
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQL--- 290 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l--- 290 (1276)
+++.|.|.+|+||||++..+... .... ...+.+...... ....+.+.++. ....+..+........
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~--l~~~-g~~Vl~~ApT~~----Aa~~L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL--AESL-GLEVGLCAPTGK----AARRLGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH--HHHT-TCCEEEEESSHH----HHHHHHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH--HHhc-CCeEEEecCcHH----HHHHhHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 68899999999999999988863 2221 233444443221 12222222221 1111111100000000
Q ss_pred ---cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEec
Q 037340 291 ---SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTR 331 (1276)
Q Consensus 291 ---~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr 331 (1276)
..+.-+||+|++..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 0123489999997666667777777665 4667776543
No 387
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.75 E-value=0.15 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|.|.|++|+||||+|+.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 388
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.56 E-value=0.14 Score=49.96 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.9
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 389
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.55 E-value=0.15 Score=52.63 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcc
Q 037340 190 GREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 190 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+.++..+++.+.+.. ...++|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444555556555532 24689999999999999999998863
No 390
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.53 E-value=0.76 Score=49.44 Aligned_cols=38 Identities=24% Similarity=0.094 Sum_probs=27.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVS 252 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 252 (1276)
..+++++|.+|+||||++..++.. ....-..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 578999999999999999998863 22222344555543
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.52 E-value=0.18 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+|.|.|+.|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.52 E-value=0.11 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|.|+.|+||||+|+.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999886
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.51 E-value=0.45 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=23.9
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEE
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWT 249 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 249 (1276)
.|+|-|..|+||||.++.+++ ..+..-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEE
Confidence 478899999999999999987 444433334433
No 394
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.42 E-value=2.4 Score=49.12 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCC---CCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 195 KEAIVELLLRDDLR---ADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++.+.+...... .....++|+|+|.+|+||||++..++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432110 113567999999999999999999986
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.34 E-value=0.15 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 396
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.16 E-value=0.68 Score=48.09 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=45.8
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhh-hccc-ccEEEEEEcCCCCHHHHHHHHHHHhhcccC------------C--C--
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRV-QRHF-QIKAWTCVSEDFDVSRVTKSILRSIADDQI------------K--D-- 275 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~--~-- 275 (1276)
+.+.|+|..|.||||+...+.-+... .... ...+.+......-..++.+.+...++.... . .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 57899999999999876655432111 1112 223444443333333444444443332100 0 0
Q ss_pred ---CCcHHHHHHHHHHHhcCCcceEeecCCCc
Q 037340 276 ---DDDLNSLQVKLKKQLSGKKILLVLDDVWN 304 (1276)
Q Consensus 276 ---~~~~~~~~~~l~~~l~~kr~LlvlDdv~~ 304 (1276)
......+.+.+...+++ --+||+|+++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 12345555555543332 34889999965
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.07 E-value=0.21 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999885
No 398
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.07 E-value=0.17 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.06 E-value=0.57 Score=50.78 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=32.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccc-cEEEEEEcCCCCHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKAWTCVSEDFDVSRVTKSILR 266 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 266 (1276)
...+++|+|.+|+|||||++.++... ...-. .++|+... .+..++...+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~--~~~~G~~v~~~~~e--~~~~~~~~r~~~ 85 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW--GTAMGKKVGLAMLE--ESVEETAEDLIG 85 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH--HHTSCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HHHcCCeEEEEeCc--CCHHHHHHHHHH
Confidence 35689999999999999999998732 22212 45565543 234444444433
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.06 E-value=0.8 Score=61.58 Aligned_cols=85 Identities=24% Similarity=0.148 Sum_probs=57.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC----CCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK----DDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l~ 287 (1276)
..+++.|.|++|+||||||.+++.. ....-..++|++....++... ++.++..... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4679999999999999999999874 332234678888877776542 4455443211 3346666666666
Q ss_pred HHh-cCCcceEeecCCC
Q 037340 288 KQL-SGKKILLVLDDVW 303 (1276)
Q Consensus 288 ~~l-~~kr~LlvlDdv~ 303 (1276)
+.. +.+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 554 3456699999884
No 401
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.99 E-value=0.15 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.5
Q ss_pred ccEEEEEecCCChHHHHHHHHh-c
Q 037340 213 FPVISINGMGGVGKTTLAQLVY-N 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~-~ 235 (1276)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999998 5
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.99 E-value=0.19 Score=51.68 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 403
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.97 E-value=0.17 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999998874
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.95 E-value=0.21 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998864
No 405
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.91 E-value=0.22 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.8
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|+|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999986
No 406
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.89 E-value=0.74 Score=61.03 Aligned_cols=86 Identities=23% Similarity=0.143 Sum_probs=57.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccC----CCCCcHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQI----KDDDDLNSLQVKLK 287 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~l~ 287 (1276)
..+++.|.|.+|+||||||.+++.. ....=..++|++....++... ++.++.+.. ....+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4679999999999999999999874 333335788988887776542 444543321 12345666666666
Q ss_pred HHh-cCCcceEeecCCCc
Q 037340 288 KQL-SGKKILLVLDDVWN 304 (1276)
Q Consensus 288 ~~l-~~kr~LlvlDdv~~ 304 (1276)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 554 34566999999843
No 407
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.78 E-value=0.22 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 408
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.73 E-value=0.2 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.73 E-value=0.24 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 410
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.71 E-value=0.23 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999886
No 411
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.69 E-value=0.33 Score=48.59 Aligned_cols=26 Identities=38% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998864
No 412
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.67 E-value=0.51 Score=60.03 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.2
Q ss_pred ccEEEEEecCCChHHHHHHHHh
Q 037340 213 FPVISINGMGGVGKTTLAQLVY 234 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~ 234 (1276)
..+++|+|+.|.||||+.+.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5799999999999999999883
No 413
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.64 E-value=1.2 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.60 E-value=0.2 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.305 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999886
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.60 E-value=0.21 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|+|.|+.|+||||+|+.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999999976
No 416
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.58 E-value=0.23 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999999884
No 417
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.43 E-value=1.3 Score=50.71 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=35.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRS 267 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 267 (1276)
...++.|.|.+|+||||+|.+++.+.... =..++|++.. .+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHH
Confidence 45689999999999999999998743222 2245565443 4455566555543
No 418
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=88.42 E-value=0.79 Score=52.10 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCC-CHHHHHHHHHH
Q 037340 198 IVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDF-DVSRVTKSILR 266 (1276)
Q Consensus 198 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 266 (1276)
.++.|..- .+..-++|.|..|+|||+|+.++.++. .+.+-+.++++-+.+.. ...++.+++.+
T Consensus 155 vID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred Eeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 45555432 234568999999999999999998731 22345677888887665 34556666654
No 419
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.41 E-value=0.25 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++++|+|..|+|||||+..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.32 E-value=0.25 Score=52.20 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 421
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.24 E-value=0.37 Score=49.75 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.1
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...+|+|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.23 E-value=0.25 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 423
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.19 E-value=0.49 Score=51.65 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFD 256 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 256 (1276)
...++|+|+|-||+||||+|..++.. ....=..++-|......+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~--La~~G~~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH--HHHCCCeEEEEeCCCCCC
Confidence 45689999999999999999988863 333223466666654433
No 424
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.19 E-value=0.24 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|+|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.18 E-value=0.26 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999886
No 426
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.89 E-value=0.41 Score=50.18 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=28.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcC
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSE 253 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 253 (1276)
...++.|.|.+|+||||+|.+++.. ....-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 3468999999999999999888763 222223567766543
No 427
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.76 E-value=0.29 Score=51.43 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.75 E-value=0.27 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.392 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||++.+.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 429
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.75 E-value=0.29 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 430
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.73 E-value=0.75 Score=51.23 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 195 KEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 195 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..++.+.+... .....+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555332 24578999999999999999998876
No 431
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.71 E-value=0.25 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|.|+|+.|+||||||+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.71 E-value=0.29 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|.|.|+.|+||||+|+.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.64 E-value=0.69 Score=46.94 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|+|.|+.|+||||+++.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 434
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.61 E-value=0.28 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4457999999999999999998876
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.61 E-value=0.15 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=18.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 436
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.58 E-value=0.56 Score=47.44 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=25.3
Q ss_pred EEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 215 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
.|.+.|.||+||||+|..++.. ....=..+..+.+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~--l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA--QLRQGVRVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHH--HHHCCCCEEEEEeCCC
Confidence 4778999999999999888873 2222223445555443
No 437
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.54 E-value=0.3 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.53 E-value=0.25 Score=50.23 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999876
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.52 E-value=0.26 Score=50.82 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.51 E-value=0.31 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999987
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.51 E-value=0.27 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 442
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.48 E-value=0.36 Score=58.23 Aligned_cols=42 Identities=26% Similarity=0.330 Sum_probs=35.8
Q ss_pred CeeecchhhHHHHHHHHhcCCCCCCCCccEEEEEecCCChHHHHHHHHhc
Q 037340 186 AKVYGREKDKEAIVELLLRDDLRADDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 186 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|.+..++.+...+... ..+.|+|++|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 46899999888888887432 4789999999999999999987
No 443
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.47 E-value=0.31 Score=51.47 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 444
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.46 E-value=0.21 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+++|+|+.|.|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 445
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=87.42 E-value=0.47 Score=53.98 Aligned_cols=86 Identities=22% Similarity=0.228 Sum_probs=47.7
Q ss_pred ccEEEEEecCCChHHHHH-HHHhcchhhhcccc-cEEEEEEcCCCC-HHHHHHHHHHHhhcc------cCCCCCcHHHH-
Q 037340 213 FPVISINGMGGVGKTTLA-QLVYNDDRVQRHFQ-IKAWTCVSEDFD-VSRVTKSILRSIADD------QIKDDDDLNSL- 282 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~~- 282 (1276)
..-++|.|..|+|||+|| .++.+.. .-+ ..+++-+++... +.++.+++.+.=... ...+.......
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 445799999999999995 5777632 234 246666776543 344444544321100 01111111111
Q ss_pred ----HHHHHHHh--cCCcceEeecCC
Q 037340 283 ----QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 283 ----~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++.+|+++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 11233333 589999999998
No 446
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.41 E-value=0.3 Score=53.97 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.39 E-value=0.3 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 448
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.37 E-value=0.32 Score=52.28 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999999886
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.33 E-value=0.3 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999986
No 450
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.31 E-value=0.31 Score=51.72 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999976
No 451
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.21 E-value=0.29 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
+|.|.|++|+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998886
No 452
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.19 E-value=0.31 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 453
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.10 E-value=0.34 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....++.+.|.||+||||++..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3457889999999999999999985
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.05 E-value=0.33 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||++.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999987
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.03 E-value=0.32 Score=50.82 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 456
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.01 E-value=0.33 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.4
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999875
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.99 E-value=0.49 Score=49.90 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=57.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHhcC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIKDDDDLNSLQVKLKKQLSG 292 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 292 (1276)
..+++|+|+.|+||||+++.+..- +...+...+++.- .+... +.+... .+..... ...+...+...+.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g-~~i~~--~~~~~~-~~v~q~~-~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE-DPIEY--VFKHKK-SIVNQRE-VGEDTKSFADALRAALRE 97 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEE-SSCCS--CCCCSS-SEEEEEE-BTTTBSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcC-Cccee--ecCCcc-eeeeHHH-hCCCHHHHHHHHHHHHhh
Confidence 468999999999999999998862 2222233333321 11000 000000 0000000 000012235566677666
Q ss_pred CcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchhhh
Q 037340 293 KKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLGVA 336 (1276)
Q Consensus 293 kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~v~ 336 (1276)
++=+|++|+..+ .+....+.... ..|.-|++||.+.++.
T Consensus 98 ~p~illlDEp~D--~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 98 DPDVIFVGEMRD--LETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CCSEEEESCCCS--HHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCCEEEeCCCCC--HHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 677899999963 33333332221 2466788888775543
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.78 E-value=0.34 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|.|+|++|+||||+|+.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999886
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.73 E-value=0.34 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 460
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.70 E-value=0.61 Score=49.67 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=27.6
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
++|+|.|.||+||||+|..++.. ....=..+.-|.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~--la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG--LHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHH--HHHCCCcEEEEcCCCC
Confidence 57888999999999999988863 3322234566666533
No 461
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.68 E-value=0.63 Score=47.65 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=18.7
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....|+|.|+.|+||||+++.+++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 462
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.56 E-value=0.36 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 463
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.54 E-value=0.32 Score=48.35 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 037340 215 VISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 464
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.44 E-value=0.72 Score=46.99 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
.....|+|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999873
No 465
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.42 E-value=1.2 Score=59.21 Aligned_cols=85 Identities=22% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC----CCCcHHHHHHHH
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK----DDDDLNSLQVKL 286 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~l 286 (1276)
++.++|-|+|+.|+||||||.++.. +....=...+|+.+.+..+..- ++.++.+... ..+.-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3568999999999999999999987 4555556788998888877754 6666554321 334445555555
Q ss_pred HHHhc-CCcceEeecCC
Q 037340 287 KKQLS-GKKILLVLDDV 302 (1276)
Q Consensus 287 ~~~l~-~kr~LlvlDdv 302 (1276)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 66664 55669999988
No 466
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=86.41 E-value=0.84 Score=47.05 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.7
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..+|+|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.39 E-value=0.36 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999986
No 468
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=86.31 E-value=0.82 Score=52.04 Aligned_cols=86 Identities=19% Similarity=0.227 Sum_probs=48.1
Q ss_pred ccEEEEEecCCChHHHHH-HHHhcchhhhccccc-EEEEEEcCCCC-HHHHHHHHHHHhhcc------cCCCCCcHHHH-
Q 037340 213 FPVISINGMGGVGKTTLA-QLVYNDDRVQRHFQI-KAWTCVSEDFD-VSRVTKSILRSIADD------QIKDDDDLNSL- 282 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~i~~~l~~~------~~~~~~~~~~~- 282 (1276)
..-++|.|..|+|||+|| .++.+.. .-+. .+++-+++... +.++.+.+.+.=... ...+.......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 445799999999999995 5777632 2342 46666776543 444555554321100 11111111111
Q ss_pred ----HHHHHHHh--cCCcceEeecCC
Q 037340 283 ----QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 283 ----~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++.+|+++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11233333 589999999998
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.30 E-value=0.37 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+.|.|.|+.|+||||||.++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.24 E-value=0.39 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 471
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.20 E-value=0.37 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.1
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 472
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.15 E-value=0.41 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCccEEEEEecCCChHHHHHHHHhc
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998876
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.14 E-value=0.34 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999886
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.09 E-value=0.4 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...++.|+|.+|+||||||..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999886
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.03 E-value=0.4 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.8
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999986
No 476
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=85.97 E-value=0.74 Score=49.65 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=27.7
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCC
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSED 254 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 254 (1276)
++|+|.|.||+||||+|..++.. ....=..+.-|.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~--La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAA--LAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHH--HHHCCCeEEEEecCCC
Confidence 68888999999999999998873 2222224556666543
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.96 E-value=0.49 Score=53.88 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.0
Q ss_pred CccEEEEEecCCChHHHHHHHHhcc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..++|+|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998873
No 478
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.81 E-value=1 Score=45.67 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.4
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...|+|.|+.|+||||+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.62 E-value=0.38 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 456899999999999999999875
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.55 E-value=0.45 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.6
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.+..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999986
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.54 E-value=0.42 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 482
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.49 E-value=0.88 Score=51.17 Aligned_cols=87 Identities=13% Similarity=0.278 Sum_probs=49.3
Q ss_pred cEEEEEecCCChHHHHHHHHhcchhhhcccc----cEEEEEEcCCC-CHHHHHHHHHHH--hhcc----cCCCCCcHHHH
Q 037340 214 PVISINGMGGVGKTTLAQLVYNDDRVQRHFQ----IKAWTCVSEDF-DVSRVTKSILRS--IADD----QIKDDDDLNSL 282 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~--l~~~----~~~~~~~~~~~ 282 (1276)
.-++|.|..|+|||+|+.++++.... +.+ .++++-+.+.. .+.++.+++.+. +... ...+.......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 34689999999999999999874322 222 45566666554 344555554442 1100 01111111111
Q ss_pred -----HHHHHHHh---cCCcceEeecCC
Q 037340 283 -----QVKLKKQL---SGKKILLVLDDV 302 (1276)
Q Consensus 283 -----~~~l~~~l---~~kr~LlvlDdv 302 (1276)
.-.+.+++ +++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12234444 378999999999
No 483
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=85.27 E-value=0.77 Score=46.04 Aligned_cols=112 Identities=11% Similarity=-0.037 Sum_probs=51.9
Q ss_pred CccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC-CCCcHHHHHHHHHHHh
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK-DDDDLNSLQVKLKKQL 290 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l 290 (1276)
...+..++|..|.||||.|....... ..+-..++.+.... +.+.-...++..++..... ...+.. .+.+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 34688999999999999998888743 32222333333221 1111122333333222110 011111 122222
Q ss_pred cCCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecchh
Q 037340 291 SGKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNLG 334 (1276)
Q Consensus 291 ~~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~~ 334 (1276)
.++--+|++|.+.--+.+.++.+.. +.+ .|-.||+|-++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccc
Confidence 3333499999985433334433332 222 3678999999643
No 484
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=85.18 E-value=0.41 Score=47.57 Aligned_cols=110 Identities=11% Similarity=0.059 Sum_probs=52.9
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhhcccccEEEEEEcCCCCHHHHHHHHHHHhhcccCC-CCCcHHHHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKAWTCVSEDFDVSRVTKSILRSIADDQIK-DDDDLNSLQVKLKKQLS 291 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~l~ 291 (1276)
.++..++|..|.||||.+....+....+ .+. ++.+.... +.+.-...+...++..... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~k-V~v~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA-KQK-IQVFKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCC-EEEEEEC---------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCE-EEEEEecc--CccchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 4799999999999999998888743222 222 22222111 1110011122222211000 001111 2333334
Q ss_pred CCcceEeecCCCccCHhhHhhhccCCCCCCCCcEEEEEecch
Q 037340 292 GKKILLVLDDVWNENYENWSILSRPFGVGAPGSKIVVTTRNL 333 (1276)
Q Consensus 292 ~kr~LlvlDdv~~~~~~~~~~~~~~l~~~~~gs~ilvTtr~~ 333 (1276)
++-=+|++|.+..-+.+..+.+... .+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~l-~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNKI-AE--SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHHH-HH--TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH-Hh--CCCEEEEEeccc
Confidence 4334999999744333334443322 12 367899998864
No 485
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=85.14 E-value=0.41 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 486
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.95 E-value=0.47 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.3
Q ss_pred cEEEEEecCCChHHHHHHHHhcc
Q 037340 214 PVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999864
No 487
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.86 E-value=0.9 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.105 Sum_probs=19.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999977765
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.67 E-value=0.46 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=21.0
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 489
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.56 E-value=0.49 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.4
Q ss_pred cEEEEEecCCChHHHHHHHHhc
Q 037340 214 PVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 214 ~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999886
No 490
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.53 E-value=1 Score=49.69 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCccEEEEEecCCChHHHHHHHHhcchhhh--cccccEEEEEEcCC
Q 037340 211 DGFPVISINGMGGVGKTTLAQLVYNDDRVQ--RHFQIKAWTCVSED 254 (1276)
Q Consensus 211 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~ 254 (1276)
...+++.+.|.||+||||+|..++.. .. ..=..+.-|+....
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~--la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQ--LALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH--HHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH--HHHhcCCCeEEEEECCCC
Confidence 34689999999999999999988862 33 22234555655533
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.45 E-value=0.55 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
..+++|+|+.|.|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 492
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=84.26 E-value=0.78 Score=51.54 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=49.3
Q ss_pred ccEEEEEecCCChHHHHHHHHhcchhhh--------cccc-cEEEEEEcCCC-CHHHHHHHHHHH--hhcc----cCCCC
Q 037340 213 FPVISINGMGGVGKTTLAQLVYNDDRVQ--------RHFQ-IKAWTCVSEDF-DVSRVTKSILRS--IADD----QIKDD 276 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~~~----~~~~~ 276 (1276)
..-++|.|..|+|||+|+.++++..... ++=+ .++++-+.+.. .+.++.+++.+. +... ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3456899999999999999998743321 1111 45566666554 344455554332 1100 01112
Q ss_pred CcHHHH-----HHHHHHHh---cCCcceEeecCC
Q 037340 277 DDLNSL-----QVKLKKQL---SGKKILLVLDDV 302 (1276)
Q Consensus 277 ~~~~~~-----~~~l~~~l---~~kr~LlvlDdv 302 (1276)
...... .-.+.+++ +++.+|+++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 222221 12234444 378999999999
No 493
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.20 E-value=1.5 Score=55.01 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=20.2
Q ss_pred CccEEEEEecCCChHHHHHHHH
Q 037340 212 GFPVISINGMGGVGKTTLAQLV 233 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v 233 (1276)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999998
No 494
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=84.17 E-value=1.4 Score=50.31 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCCCCccEEEEEecCCChHHHHH-HHHhcchhhh----cccc-cEEEEEEcCCCC-HHHHHHHHHHHhh
Q 037340 197 AIVELLLRDDLRADDGFPVISINGMGGVGKTTLA-QLVYNDDRVQ----RHFQ-IKAWTCVSEDFD-VSRVTKSILRSIA 269 (1276)
Q Consensus 197 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~f~-~~~wv~~~~~~~-~~~~~~~i~~~l~ 269 (1276)
+.++.+..- .+..-++|.|..|+|||+|| .++.+..... ++-+ ..+++-+++... +.++.+.+.+.=.
T Consensus 151 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 345555432 23445799999999999995 5666632210 1233 356777776543 4445555543210
Q ss_pred cc------cCCCCCcHHHH-----HHHHHHHh--cCCcceEeecCC
Q 037340 270 DD------QIKDDDDLNSL-----QVKLKKQL--SGKKILLVLDDV 302 (1276)
Q Consensus 270 ~~------~~~~~~~~~~~-----~~~l~~~l--~~kr~LlvlDdv 302 (1276)
.. ...+....... .-.+.+++ +++.+|+++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 00 01111111111 11233333 589999999998
No 495
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=84.14 E-value=1.7 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCccEEEEEecCCChHHHHHHHHhc
Q 037340 210 DDGFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 210 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
....++..|.|.+|.||||+.++.++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45678999999999999999998875
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=84.13 E-value=0.64 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.2
Q ss_pred ccEEEEEecCCChHHHHHHHHhcc
Q 037340 213 FPVISINGMGGVGKTTLAQLVYND 236 (1276)
Q Consensus 213 ~~vi~I~G~gGiGKTtLa~~v~~~ 236 (1276)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 497
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.12 E-value=2.2 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||++.+..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998875
No 498
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.06 E-value=3.3 Score=42.78 Aligned_cols=20 Identities=35% Similarity=0.207 Sum_probs=17.9
Q ss_pred EEEEecCCChHHHHHHHHhc
Q 037340 216 ISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 216 i~I~G~gGiGKTtLa~~v~~ 235 (1276)
+.|+|..|.|||.+|..+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 77899999999999988775
No 499
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.03 E-value=0.53 Score=49.89 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 037340 215 VISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 215 vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999986
No 500
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.98 E-value=0.58 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.5
Q ss_pred CccEEEEEecCCChHHHHHHHHhc
Q 037340 212 GFPVISINGMGGVGKTTLAQLVYN 235 (1276)
Q Consensus 212 ~~~vi~I~G~gGiGKTtLa~~v~~ 235 (1276)
...+++|+|+.|.|||||.+.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999875
Done!