Query 037345
Match_columns 357
No_of_seqs 135 out of 1550
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.9E-34 4E-39 248.7 25.1 214 100-328 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 1.9E-15 4.1E-20 122.9 16.1 136 212-348 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.6 7.4E-15 1.6E-19 114.5 14.8 103 212-314 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.6 1.7E-12 3.7E-17 116.3 22.9 322 1-350 1-373 (373)
5 PHA02713 hypothetical protein; 99.1 1.2E-08 2.6E-13 98.9 19.7 207 100-333 299-540 (557)
6 PLN02153 epithiospecifier prot 99.0 8E-08 1.7E-12 87.9 20.5 205 116-334 51-292 (341)
7 KOG4441 Proteins containing BT 99.0 5.4E-08 1.2E-12 94.2 19.5 208 99-334 327-554 (571)
8 PLN02193 nitrile-specifier pro 98.9 2E-07 4.2E-12 88.9 21.0 203 116-334 194-418 (470)
9 PHA03098 kelch-like protein; P 98.9 1.9E-07 4.1E-12 90.8 20.6 192 116-334 312-519 (534)
10 PF12937 F-box-like: F-box-lik 98.9 9.1E-10 2E-14 69.2 2.9 40 4-43 1-40 (47)
11 PHA02790 Kelch-like protein; P 98.9 4.5E-07 9.7E-12 86.7 22.5 184 116-333 288-477 (480)
12 PHA02713 hypothetical protein; 98.9 1.6E-07 3.5E-12 91.1 18.3 192 116-333 273-496 (557)
13 PF00646 F-box: F-box domain; 98.7 7.4E-09 1.6E-13 65.4 3.1 45 4-48 3-47 (48)
14 TIGR03547 muta_rot_YjhT mutatr 98.7 6.6E-06 1.4E-10 75.5 23.5 213 102-333 15-305 (346)
15 KOG4441 Proteins containing BT 98.7 1E-06 2.2E-11 85.4 18.7 194 115-334 301-507 (571)
16 smart00256 FBOX A Receptor for 98.7 8.7E-09 1.9E-13 62.7 2.3 39 7-45 1-39 (41)
17 TIGR03548 mutarot_permut cycli 98.6 8.1E-06 1.8E-10 74.1 20.7 148 178-334 89-287 (323)
18 PRK14131 N-acetylneuraminic ac 98.6 7.6E-06 1.7E-10 75.9 19.7 217 101-334 35-328 (376)
19 PHA03098 kelch-like protein; P 98.5 1E-05 2.2E-10 78.7 17.3 144 181-334 313-472 (534)
20 PHA02790 Kelch-like protein; P 98.4 2.5E-05 5.4E-10 74.8 18.9 142 177-333 287-430 (480)
21 PLN02153 epithiospecifier prot 98.4 2.4E-05 5.2E-10 71.6 18.1 152 181-334 52-233 (341)
22 PLN02193 nitrile-specifier pro 98.4 7.4E-05 1.6E-09 71.3 21.7 152 181-334 195-359 (470)
23 PRK14131 N-acetylneuraminic ac 98.3 0.00049 1.1E-08 63.9 22.7 145 181-332 191-374 (376)
24 TIGR03548 mutarot_permut cycli 98.2 0.0001 2.2E-09 67.0 16.7 154 100-271 119-312 (323)
25 TIGR03547 muta_rot_YjhT mutatr 98.1 0.0011 2.4E-08 60.8 22.0 130 178-316 169-329 (346)
26 KOG4693 Uncharacterized conser 98.0 0.00012 2.7E-09 61.8 11.7 210 114-336 43-286 (392)
27 KOG4693 Uncharacterized conser 97.5 0.0018 3.8E-08 55.0 11.6 135 176-315 154-309 (392)
28 KOG1230 Protein containing rep 97.4 0.0088 1.9E-07 54.0 14.6 151 182-336 157-350 (521)
29 KOG2120 SCF ubiquitin ligase, 97.2 0.00016 3.5E-09 62.5 1.9 39 4-42 98-136 (419)
30 KOG0281 Beta-TrCP (transducin 97.2 0.019 4.1E-07 50.6 14.2 42 4-45 75-120 (499)
31 KOG0379 Kelch repeat-containin 96.9 0.047 1E-06 52.4 15.2 151 180-333 89-256 (482)
32 KOG0379 Kelch repeat-containin 96.8 0.12 2.7E-06 49.5 18.0 201 116-333 89-308 (482)
33 KOG1230 Protein containing rep 96.5 0.16 3.4E-06 46.2 15.0 149 181-333 100-287 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.0 0.0038 8.2E-08 54.4 2.1 45 4-48 107-156 (366)
35 PF02191 OLF: Olfactomedin-lik 95.6 0.44 9.6E-06 41.3 13.1 119 210-336 72-213 (250)
36 TIGR01640 F_box_assoc_1 F-box 94.4 1.4 3.1E-05 37.6 13.2 117 214-336 3-137 (230)
37 PF13964 Kelch_6: Kelch motif 93.8 0.17 3.7E-06 31.6 4.6 37 210-246 5-44 (50)
38 smart00284 OLF Olfactomedin-li 93.3 2.2 4.8E-05 36.9 12.0 119 210-336 77-218 (255)
39 PF08450 SGL: SMP-30/Gluconola 91.8 7.8 0.00017 33.3 23.4 213 101-345 8-232 (246)
40 KOG4152 Host cell transcriptio 91.8 7.2 0.00016 36.9 13.7 161 115-291 57-246 (830)
41 COG3055 Uncharacterized protei 91.8 9.8 0.00021 34.4 15.5 134 175-316 192-357 (381)
42 PF01344 Kelch_1: Kelch motif; 91.4 0.42 9.1E-06 29.2 4.0 37 210-246 5-44 (47)
43 KOG2055 WD40 repeat protein [G 91.1 8.3 0.00018 35.9 13.2 116 210-333 262-381 (514)
44 PF02897 Peptidase_S9_N: Proly 90.4 15 0.00034 34.3 18.5 120 214-334 285-412 (414)
45 PF13964 Kelch_6: Kelch motif 90.2 0.38 8.2E-06 30.0 3.0 21 115-135 28-48 (50)
46 PF07646 Kelch_2: Kelch motif; 90.0 0.94 2E-05 28.1 4.7 38 210-247 5-47 (49)
47 COG4257 Vgb Streptogramin lyas 90.0 6.8 0.00015 34.2 11.1 143 96-268 191-334 (353)
48 PF07250 Glyoxal_oxid_N: Glyox 88.5 14 0.0003 31.9 12.2 144 183-336 50-209 (243)
49 KOG0274 Cdc4 and related F-box 87.7 29 0.00063 33.9 19.4 44 3-46 107-150 (537)
50 PF13360 PQQ_2: PQQ-like domai 87.2 17 0.00037 30.7 16.1 134 182-333 6-147 (238)
51 KOG0310 Conserved WD40 repeat- 87.1 27 0.00058 32.8 13.7 193 120-348 7-207 (487)
52 PF07762 DUF1618: Protein of u 87.0 5.9 0.00013 30.5 8.4 65 231-295 7-98 (131)
53 PF13360 PQQ_2: PQQ-like domai 87.0 18 0.00038 30.6 16.1 188 103-332 35-236 (238)
54 KOG4341 F-box protein containi 86.8 0.34 7.4E-06 44.4 1.5 36 5-40 73-108 (483)
55 COG4257 Vgb Streptogramin lyas 86.6 21 0.00046 31.3 16.6 226 96-335 64-314 (353)
56 KOG3545 Olfactomedin and relat 85.8 17 0.00037 31.2 10.9 119 210-336 71-212 (249)
57 PRK11138 outer membrane biogen 85.1 24 0.00052 32.8 13.1 108 210-332 63-184 (394)
58 TIGR03300 assembly_YfgL outer 82.0 42 0.00091 30.9 14.0 109 210-331 99-213 (377)
59 PF06433 Me-amine-dh_H: Methyl 81.2 43 0.00093 30.4 12.3 119 210-333 187-327 (342)
60 COG3055 Uncharacterized protei 80.1 16 0.00035 33.1 9.0 108 181-295 115-267 (381)
61 smart00612 Kelch Kelch domain. 79.7 2.3 5E-05 25.4 2.8 18 177-196 15-32 (47)
62 PRK11138 outer membrane biogen 79.6 53 0.0011 30.6 13.2 106 210-332 250-359 (394)
63 PF13418 Kelch_4: Galactose ox 79.5 5.5 0.00012 24.4 4.5 27 307-333 11-44 (49)
64 COG1520 FOG: WD40-like repeat 78.3 56 0.0012 30.1 12.9 109 212-333 64-178 (370)
65 TIGR03300 assembly_YfgL outer 78.0 57 0.0012 30.0 13.6 107 210-331 59-168 (377)
66 smart00564 PQQ beta-propeller 77.4 6.9 0.00015 21.5 4.1 26 307-332 5-30 (33)
67 PF12458 DUF3686: ATPase invol 76.0 18 0.00039 33.6 8.3 61 217-283 320-384 (448)
68 PF10282 Lactonase: Lactonase, 74.6 68 0.0015 29.2 14.6 115 216-334 154-285 (345)
69 TIGR03074 PQQ_membr_DH membran 74.5 51 0.0011 33.8 12.0 31 210-244 188-220 (764)
70 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.1 68 0.0015 31.3 12.5 112 210-333 63-196 (527)
71 PF01011 PQQ: PQQ enzyme repea 74.0 5.6 0.00012 23.0 3.2 25 309-333 1-25 (38)
72 PF13570 PQQ_3: PQQ-like domai 73.4 7.3 0.00016 22.7 3.7 26 210-239 15-40 (40)
73 PLN02772 guanylate kinase 73.0 24 0.00052 32.8 8.5 73 210-284 28-107 (398)
74 TIGR02658 TTQ_MADH_Hv methylam 72.5 79 0.0017 29.1 13.7 119 213-336 202-342 (352)
75 PF08450 SGL: SMP-30/Gluconola 71.7 63 0.0014 27.6 16.7 110 211-333 4-129 (246)
76 KOG0647 mRNA export protein (c 70.3 57 0.0012 29.0 9.6 76 274-350 49-126 (347)
77 cd01206 Homer Homer type EVH1 66.5 13 0.00029 27.4 4.3 40 115-165 11-51 (111)
78 PRK11028 6-phosphogluconolacto 64.9 1.1E+02 0.0023 27.6 14.3 104 216-327 45-157 (330)
79 PF13415 Kelch_3: Galactose ox 64.6 6.3 0.00014 24.2 2.2 22 115-136 19-40 (49)
80 PF07646 Kelch_2: Kelch motif; 64.1 18 0.00039 22.1 4.2 36 256-291 5-46 (49)
81 COG4946 Uncharacterized protei 63.3 1.4E+02 0.0031 28.4 15.0 34 302-335 406-440 (668)
82 PF03088 Str_synth: Strictosid 61.4 18 0.00039 25.8 4.2 17 317-333 36-52 (89)
83 KOG0303 Actin-binding protein 58.5 1.6E+02 0.0034 27.4 12.1 119 211-333 179-303 (472)
84 KOG0294 WD40 repeat-containing 57.8 1.4E+02 0.0031 26.8 10.8 114 210-333 46-164 (362)
85 KOG2106 Uncharacterized conser 57.7 1.8E+02 0.004 27.9 13.1 70 273-348 388-458 (626)
86 COG3386 Gluconolactonase [Carb 55.1 1.6E+02 0.0035 26.5 11.9 108 216-333 36-158 (307)
87 PF13013 F-box-like_2: F-box-l 53.9 9.4 0.0002 28.4 1.8 29 4-32 22-50 (109)
88 PF15525 DUF4652: Domain of un 53.4 80 0.0017 26.0 7.0 58 275-333 86-155 (200)
89 cd01207 Ena-Vasp Enabled-VASP- 49.5 47 0.001 24.8 4.9 43 116-166 10-52 (111)
90 KOG2502 Tub family proteins [G 48.8 13 0.00029 33.4 2.3 38 3-40 44-89 (355)
91 PF05096 Glu_cyclase_2: Glutam 48.3 1.9E+02 0.0041 25.4 13.4 109 215-333 54-165 (264)
92 cd00216 PQQ_DH Dehydrogenases 48.2 2.5E+02 0.0055 27.1 11.1 31 210-244 55-87 (488)
93 PF07893 DUF1668: Protein of u 47.0 2.3E+02 0.005 25.9 13.0 101 230-334 86-215 (342)
94 KOG0321 WD40 repeat-containing 46.4 82 0.0018 31.0 7.1 112 215-332 63-181 (720)
95 PF08268 FBA_3: F-box associat 45.7 41 0.00089 25.6 4.4 31 306-336 3-38 (129)
96 KOG1963 WD40 repeat protein [G 45.4 3.6E+02 0.0077 27.7 16.6 102 230-333 432-546 (792)
97 KOG1920 IkappaB kinase complex 44.4 4.4E+02 0.0096 28.5 16.4 67 229-295 265-334 (1265)
98 PF01344 Kelch_1: Kelch motif; 43.8 68 0.0015 18.9 6.6 38 256-293 5-46 (47)
99 KOG0293 WD40 repeat-containing 42.9 1.2E+02 0.0026 28.3 7.2 71 259-333 403-477 (519)
100 KOG0649 WD40 repeat protein [G 42.4 99 0.0022 26.7 6.2 84 247-333 56-151 (325)
101 KOG2048 WD40 repeat protein [G 40.5 2.1E+02 0.0046 28.4 8.9 110 214-333 437-555 (691)
102 PF07893 DUF1668: Protein of u 39.0 3.1E+02 0.0067 25.1 13.2 131 103-251 75-223 (342)
103 PF15408 PH_7: Pleckstrin homo 38.4 17 0.00036 25.4 1.0 24 22-45 77-100 (104)
104 TIGR03032 conserved hypothetic 37.4 3.1E+02 0.0067 24.9 8.8 93 258-350 157-255 (335)
105 COG4946 Uncharacterized protei 36.8 41 0.00088 31.8 3.5 30 307-336 276-305 (668)
106 KOG1310 WD40 repeat protein [G 35.8 2.3E+02 0.005 27.6 8.1 117 102-240 59-180 (758)
107 PLN02772 guanylate kinase 32.0 1.9E+02 0.0041 27.1 7.0 75 256-330 28-112 (398)
108 KOG0292 Vesicle coat complex C 31.9 4.2E+02 0.009 27.8 9.5 76 257-333 210-287 (1202)
109 PF12768 Rax2: Cortical protei 31.9 1.1E+02 0.0024 27.2 5.3 109 176-292 15-130 (281)
110 KOG0279 G protein beta subunit 31.8 2.6E+02 0.0057 24.7 7.3 92 231-330 173-266 (315)
111 PTZ00420 coronin; Provisional 31.6 5.3E+02 0.011 25.6 15.9 114 216-333 178-300 (568)
112 PF06433 Me-amine-dh_H: Methyl 30.2 4.3E+02 0.0094 24.2 13.0 170 150-333 41-220 (342)
113 KOG2321 WD40 repeat protein [G 29.6 5.6E+02 0.012 25.3 10.6 109 218-333 147-265 (703)
114 PF05096 Glu_cyclase_2: Glutam 28.4 4.1E+02 0.0089 23.3 15.9 134 181-333 70-210 (264)
115 PF14339 DUF4394: Domain of un 27.9 1.8E+02 0.0038 25.1 5.6 54 103-163 37-92 (236)
116 COG2706 3-carboxymuconate cycl 26.7 5E+02 0.011 23.8 14.5 117 216-335 155-285 (346)
117 PF02393 US22: US22 like; Int 26.7 1.1E+02 0.0023 23.0 3.9 26 309-334 82-107 (125)
118 KOG2048 WD40 repeat protein [G 25.6 5.3E+02 0.011 25.8 8.9 67 263-333 38-105 (691)
119 KOG0265 U5 snRNP-specific prot 23.9 4.7E+02 0.01 23.5 7.5 65 262-332 58-126 (338)
120 PF11547 E3_UbLigase_EDD: E3 u 23.6 46 0.001 20.4 1.0 21 3-23 4-24 (53)
121 KOG0772 Uncharacterized conser 23.2 1.6E+02 0.0034 28.4 4.8 84 260-349 373-469 (641)
122 PLN02919 haloacid dehalogenase 23.1 9.8E+02 0.021 25.9 24.2 110 216-330 750-892 (1057)
123 PF00400 WD40: WD domain, G-be 22.6 1.5E+02 0.0032 16.3 6.6 38 287-324 1-39 (39)
124 PF06058 DCP1: Dcp1-like decap 22.2 1.6E+02 0.0036 22.3 4.1 21 316-336 27-47 (122)
125 KOG0296 Angio-associated migra 21.9 6.4E+02 0.014 23.3 12.0 97 230-333 86-185 (399)
126 PF00397 WW: WW domain; Inter 21.4 1.3E+02 0.0029 16.3 2.6 15 317-331 13-27 (31)
127 KOG4499 Ca2+-binding protein R 21.1 3.7E+02 0.008 23.3 6.2 45 301-345 215-261 (310)
128 KOG3926 F-box proteins [Amino 21.0 91 0.002 27.3 2.6 36 5-40 203-239 (332)
129 PF13018 ESPR: Extended Signal 20.9 49 0.0011 17.1 0.7 15 118-132 7-21 (24)
130 TIGR03866 PQQ_ABC_repeats PQQ- 20.2 5.5E+02 0.012 21.9 23.6 113 215-333 124-244 (300)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.9e-34 Score=248.75 Aligned_cols=214 Identities=21% Similarity=0.394 Sum_probs=161.2
Q ss_pred EecccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcce
Q 037345 100 LGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVST 179 (357)
Q Consensus 100 ~~s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 179 (357)
++|||||||+... ..++||||+||+++.||+++....... ...++||||+.+++||||++...... .....+
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~ 72 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKE---SDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEH 72 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccc---cceEEEeecccCCcEEEEEEEeecCC---CCCccE
Confidence 3689999998765 478999999999999998764211111 11589999999999999999764321 123466
Q ss_pred EEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC-Cc-CEEEEEECCCccee-EecCCCCCC--CC
Q 037345 180 EVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN-NC-QEILSFHMRDEAFH-VIKCPDNSY--FP 254 (357)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~-~~i~~fD~~~e~~~-~i~lP~~~~--~~ 254 (357)
+ ||++++++||.++..+. ... .. ..+|++||++||++.... .. ..|++||+++|+|+ .+++|.... ..
T Consensus 73 ~--Vys~~~~~Wr~~~~~~~-~~~--~~--~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~ 145 (230)
T TIGR01640 73 Q--VYTLGSNSWRTIECSPP-HHP--LK--SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD 145 (230)
T ss_pred E--EEEeCCCCccccccCCC-Ccc--cc--CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence 6 99999999999884332 111 11 349999999999986542 12 27999999999999 599997652 22
Q ss_pred CCeEEEECCeEEEEEecCCCCeEEEEEEcC---CeeEEEEEEccC--Cce---eEEEEEeeCCcEEEEeeC--Ce-EEEE
Q 037345 255 NPILGVYDNSLHFLDFDRSESCFEKWVMKE---GSWTKQLSVGPI--LGV---LRALEFWKNGSFFIESNT--NQ-LLLY 323 (357)
Q Consensus 255 ~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~--~~~---~~~~~~~~~~~i~~~~~~--~~-~~~y 323 (357)
...|++++|+|+++........++||+|++ .+|+|+++|+.. ..+ ..+.++.++|+|++...+ +. +++|
T Consensus 146 ~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y 225 (230)
T TIGR01640 146 YLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYY 225 (230)
T ss_pred ceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence 367999999999999864445699999997 679999999842 122 347888889999998764 34 9999
Q ss_pred ECCCC
Q 037345 324 DPNTR 328 (357)
Q Consensus 324 d~~t~ 328 (357)
|++++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 99975
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.68 E-value=1.9e-15 Score=122.87 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=99.9
Q ss_pred ceEECceEEEEEccCCCcC--EEEEEECCCcce-eEecCCCCCC--CCCCeEE-EECCeEEEEEecCCCCeEEEEEEcC-
Q 037345 212 NTYLDRICYWIAWRYNNCQ--EILSFHMRDEAF-HVIKCPDNSY--FPNPILG-VYDNSLHFLDFDRSESCFEKWVMKE- 284 (357)
Q Consensus 212 ~v~~~G~lyw~~~~~~~~~--~i~~fD~~~e~~-~~i~lP~~~~--~~~~~l~-~~~g~L~l~~~~~~~~~~~iW~l~~- 284 (357)
+|++||++||++....... .|++||+++|+| ..+++|.... .....|. +.+|+||++........++||+|++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 6899999999997653222 799999999999 8899998874 2235664 4478999998765566799999995
Q ss_pred ----CeeEEEEEEccCCce-------eEEEEEeeCCcEEEEee-C------CeEEEEECCCCcEEEeeecC---CcEEEE
Q 037345 285 ----GSWTKQLSVGPILGV-------LRALEFWKNGSFFIESN-T------NQLLLYDPNTRALRDVGLGT---DGLFLH 343 (357)
Q Consensus 285 ----~~W~~~~~i~~~~~~-------~~~~~~~~~~~i~~~~~-~------~~~~~yd~~t~~~~~v~~~~---~~~~~~ 343 (357)
.+|+|.++|+..... ...+.+.+++++++..+ + ..++.++ +++.+++++++. .++...
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 699999999843211 12233345567766643 1 4588888 888999997742 356788
Q ss_pred Eeeec
Q 037345 344 RYKES 348 (357)
Q Consensus 344 ~y~~s 348 (357)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 89987
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=7.4e-15 Score=114.46 Aligned_cols=103 Identities=23% Similarity=0.479 Sum_probs=82.6
Q ss_pred ceEECceEEEEEcc-CCCcCEEEEEECCCcceeEecCC--CCCCCCCCeEEEECCeEEEEEecCCC--CeEEEEEEcC--
Q 037345 212 NTYLDRICYWIAWR-YNNCQEILSFHMRDEAFHVIKCP--DNSYFPNPILGVYDNSLHFLDFDRSE--SCFEKWVMKE-- 284 (357)
Q Consensus 212 ~v~~~G~lyw~~~~-~~~~~~i~~fD~~~e~~~~i~lP--~~~~~~~~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~-- 284 (357)
++++||++||++.. ......|++||+++|+|+.|++| .........|++++|+|+++...... ..++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 68999999999976 23567999999999999999999 22244558999999999999876432 4799999998
Q ss_pred -CeeEEEEEEccCC-------ceeEEEEEeeCCcEEEE
Q 037345 285 -GSWTKQLSVGPIL-------GVLRALEFWKNGSFFIE 314 (357)
Q Consensus 285 -~~W~~~~~i~~~~-------~~~~~~~~~~~~~i~~~ 314 (357)
++|++++.+-+.. ....+.++.++|++++.
T Consensus 81 k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 KQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 7999987754431 24577888888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.56 E-value=1.7e-12 Score=116.30 Aligned_cols=322 Identities=11% Similarity=0.119 Sum_probs=162.4
Q ss_pred CCCCCCCcHHHHHHHHhcCCc-cccchhhcchHhHHhhcCChHHHHHHhhcCCCCCceEEEEecCCCCCCCCeEeecCCc
Q 037345 1 MTSNDDFSEDLLIEILSRLPV-KSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDET 79 (357)
Q Consensus 1 m~~~~~LP~Dll~~IL~rLP~-~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (357)
|+.+++||+|++..|..|||. .++.|||+||++||+.+.... + ..+.+..|.+++.... +.. .+.+ .+..
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~--~~~~~~~~~~~~~~~~--~~~-~~~~-~~~~ 71 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K--KNPFRTRPLILFNPIN--PSE-TLTD-DRSY 71 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c--cCCcccccccccCccc--CCC-Cccc-cccc
Confidence 899999999999999999965 899999999999999876410 0 0001111222221100 000 0000 0000
Q ss_pred ccccCCCCCCCCCCCCCceE-EecccceEEEeecC--CCeEEEEeccccchhcCCCCCCCCCCcccccc-ceeEE-eeeC
Q 037345 80 LVDLSNDERFEPPTRHDHEL-LGNCNGLFCLHDKN--SNRISIWNLATREFRALPKWKGEIPRHKWVYQ-LNFGF-ELDS 154 (357)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~s~~GLll~~~~~--~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~-~~~~l-g~d~ 154 (357)
.... ...+......++.. .++.+|+|.-...+ ..++.+.||.++....+|+-......-..... ..+.+ +.+.
T Consensus 72 ~~~~--~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~ 149 (373)
T PLN03215 72 ISRP--GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAK 149 (373)
T ss_pred cccc--cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccc
Confidence 0000 00000000000000 13467888765433 45779999999998888753221111000000 01111 1110
Q ss_pred CC---CCeEEEEEEEecCCCCCCCCcceEEEEEEc------CCCceeecccCCcccccccCCCCCcceEECceEEEEEcc
Q 037345 155 SS---NDYKIIFILNLTDDNTRKDSVSTEVILHTL------STDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWR 225 (357)
Q Consensus 155 ~~---~~ykvv~~~~~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~ 225 (357)
.. ..|+-+.+.....+. ........ |+.- ..++|..++.. ...+ ...|+.+|.+|-+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~~~vl~--i~~~g~l~~w~~~~Wt~l~~~---~~~~-----~DIi~~kGkfYAvD~~ 218 (373)
T PLN03215 150 RRETRPGYQRSALVKVKEGD-NHRDGVLG--IGRDGKINYWDGNVLKALKQM---GYHF-----SDIIVHKGQTYALDSI 218 (373)
T ss_pred ccccccceeEEEEEEeecCC-CcceEEEE--EeecCcEeeecCCeeeEccCC---Ccee-----eEEEEECCEEEEEcCC
Confidence 00 013111111111110 00000111 2211 14788877631 2222 6789999999998644
Q ss_pred CCCcCEEEEEECCCcceeEecCCC------CCCCCCCeEEEECCeEEEEEecC---------------CCCeEEEEEEcC
Q 037345 226 YNNCQEILSFHMRDEAFHVIKCPD------NSYFPNPILGVYDNSLHFLDFDR---------------SESCFEKWVMKE 284 (357)
Q Consensus 226 ~~~~~~i~~fD~~~e~~~~i~lP~------~~~~~~~~l~~~~g~L~l~~~~~---------------~~~~~~iW~l~~ 284 (357)
+ .+.++|.+-+ .+.+..+. ........|++..|+|.++.... ....++|+.++.
T Consensus 219 G----~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~ 293 (373)
T PLN03215 219 G----IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD 293 (373)
T ss_pred C----eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC
Confidence 4 6777774321 22222111 11122367999999999987631 124689999987
Q ss_pred --CeeEEEEEEccCCcee---EEEEEe-------eCCcEEEEeeCCeEEEEECCCCcEEEe--eecC-CcEEEEEeeecc
Q 037345 285 --GSWTKQLSVGPILGVL---RALEFW-------KNGSFFIESNTNQLLLYDPNTRALRDV--GLGT-DGLFLHRYKESL 349 (357)
Q Consensus 285 --~~W~~~~~i~~~~~~~---~~~~~~-------~~~~i~~~~~~~~~~~yd~~t~~~~~v--~~~~-~~~~~~~y~~sl 349 (357)
.+|+++.+++....+. ...++. ..+-||+.+ +....+||++.++...+ ++.. .+-.+-+|+||+
T Consensus 294 ~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd-d~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 372 (373)
T PLN03215 294 ELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE-DTMPKVFKLDNGNGSSIETTISESSQSSFEMFVPSF 372 (373)
T ss_pred CCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC-CCcceEEECCCCCccceEeecCccccchheeecccc
Confidence 8999999887432111 111111 235677764 67788999999997666 3331 222345666665
Q ss_pred c
Q 037345 350 I 350 (357)
Q Consensus 350 ~ 350 (357)
+
T Consensus 373 ~ 373 (373)
T PLN03215 373 L 373 (373)
T ss_pred C
Confidence 3
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.08 E-value=1.2e-08 Score=98.89 Aligned_cols=207 Identities=12% Similarity=0.130 Sum_probs=128.5
Q ss_pred EecccceEEEeecC------CCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCC
Q 037345 100 LGNCNGLFCLHDKN------SNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTR 173 (357)
Q Consensus 100 ~~s~~GLll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~ 173 (357)
.+..+|.|.+..+. ...+..+||.+++|..+|+++...... ....++ + |+..+......
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-------~~~~~~---g--~IYviGG~~~~--- 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-------SLAVID---D--TIYAIGGQNGT--- 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-------eEEEEC---C--EEEEECCcCCC---
Confidence 34456666555431 135789999999999999987643211 111222 1 33333322111
Q ss_pred CCCcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCC--------------------cCEEE
Q 037345 174 KDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNN--------------------CQEIL 233 (357)
Q Consensus 174 ~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--------------------~~~i~ 233 (357)
.....+| +|++.+++|..++..+. +... ...+.++|.+|.+.+.... ...+.
T Consensus 364 ~~~~sve--~Ydp~~~~W~~~~~mp~-~r~~-----~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve 435 (557)
T PHA02713 364 NVERTIE--CYTMGDDKWKMLPDMPI-ALSS-----YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVI 435 (557)
T ss_pred CCCceEE--EEECCCCeEEECCCCCc-cccc-----ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEE
Confidence 1234677 99999999998775332 2211 4567899999999764310 24689
Q ss_pred EEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEecCCC----CeEEEEEEcC-CeeEEEEEEccCCceeEEEEEee
Q 037345 234 SFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFDRSE----SCFEKWVMKE-GSWTKQLSVGPILGVLRALEFWK 307 (357)
Q Consensus 234 ~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~~~----~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~ 307 (357)
+||+.+++|+.++ +|.. .....+++.+|+|++++..... ..++.+--+. .+|+....++.. ....-...-
T Consensus 436 ~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~ 511 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH 511 (557)
T ss_pred EECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE
Confidence 9999999999764 3333 2234678999999999864321 1233343333 479987765432 112222223
Q ss_pred CCcEEEEee-CC--eEEEEECCCCcEEEe
Q 037345 308 NGSFFIESN-TN--QLLLYDPNTRALRDV 333 (357)
Q Consensus 308 ~~~i~~~~~-~~--~~~~yd~~t~~~~~v 333 (357)
+|.||++.. ++ .+-.||++|++|..+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccch
Confidence 688888865 33 588999999999988
No 6
>PLN02153 epithiospecifier protein
Probab=99.00 E-value=8e-08 Score=87.91 Aligned_cols=205 Identities=10% Similarity=0.071 Sum_probs=116.5
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
.++++||.+++|..+|+........ ..++......+ +++.+...... .....++ +|+..+++|+.++
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~------~~~~~~~~~~~--~iyv~GG~~~~---~~~~~v~--~yd~~t~~W~~~~ 117 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRIS------CLGVRMVAVGT--KLYIFGGRDEK---REFSDFY--SYDTVKNEWTFLT 117 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCc------cCceEEEEECC--EEEEECCCCCC---CccCcEE--EEECCCCEEEEec
Confidence 5799999999999988654211111 11111111112 23333221111 1123455 9999999999876
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCCC--------cCEEEEEECCCcceeEecCCCCC--CCCCCeEEEECCeE
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYNN--------CQEILSFHMRDEAFHVIKCPDNS--YFPNPILGVYDNSL 265 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~--------~~~i~~fD~~~e~~~~i~lP~~~--~~~~~~l~~~~g~L 265 (357)
.......+..+. ....+..+|.+|.+.+.... -..+.+||+.+.+|..++.+... ......++..+|+|
T Consensus 118 ~~~~~~~p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i 196 (341)
T PLN02153 118 KLDEEGGPEART-FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI 196 (341)
T ss_pred cCCCCCCCCCce-eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence 431101111111 14567889999998765311 13588999999999987643211 22224567789999
Q ss_pred EEEEecCC---------CCeEEEEEEcC--CeeEEEEEEccC-CceeEEEEEeeCCcEEEEeeC---------------C
Q 037345 266 HFLDFDRS---------ESCFEKWVMKE--GSWTKQLSVGPI-LGVLRALEFWKNGSFFIESNT---------------N 318 (357)
Q Consensus 266 ~l~~~~~~---------~~~~~iW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~~~i~~~~~~---------------~ 318 (357)
+++..... ...-++++++- .+|+++...+.. ........+.-++.||++... .
T Consensus 197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n 276 (341)
T PLN02153 197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSN 276 (341)
T ss_pred EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccc
Confidence 98864210 01124555554 899987654321 111122222335677776431 2
Q ss_pred eEEEEECCCCcEEEee
Q 037345 319 QLLLYDPNTRALRDVG 334 (357)
Q Consensus 319 ~~~~yd~~t~~~~~v~ 334 (357)
.++.||+++++|+++.
T Consensus 277 ~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 277 EGYALDTETLVWEKLG 292 (341)
T ss_pred cEEEEEcCccEEEecc
Confidence 6899999999999984
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.98 E-value=5.4e-08 Score=94.22 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=134.2
Q ss_pred EEecccceEEEeecC------CCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCC
Q 037345 99 LLGNCNGLFCLHDKN------SNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNT 172 (357)
Q Consensus 99 ~~~s~~GLll~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~ 172 (357)
-++..+|.|....+. -.....+||.|++|..+|++...+.. .+++ .. .-++..+......
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~--------~~v~--~l--~g~iYavGG~dg~-- 392 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD--------FGVA--VL--DGKLYAVGGFDGE-- 392 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc--------ceeE--EE--CCEEEEEeccccc--
Confidence 455566766554422 14679999999999999999875322 2222 11 2333444332221
Q ss_pred CCCCcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCCc---CEEEEEECCCcceeEec-CC
Q 037345 173 RKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNC---QEILSFHMRDEAFHVIK-CP 248 (357)
Q Consensus 173 ~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~i~~fD~~~e~~~~i~-lP 248 (357)
....++| .|+..+++|..++..+. ... ....+.++|.+|-+.+..... ..+.+||+.+++|+.++ ++
T Consensus 393 -~~l~svE--~YDp~~~~W~~va~m~~-~r~-----~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 393 -KSLNSVE--CYDPVTNKWTPVAPMLT-RRS-----GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred -cccccEE--EecCCCCcccccCCCCc-cee-----eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 2345788 99999999998875332 111 156788999999998765333 68999999999999653 44
Q ss_pred CCCCCCCCeEEEECCeEEEEEecCCC---CeEEEEEEcCCeeEEEEEEccCCceeEEEEE-eeCCcEEEEee------CC
Q 037345 249 DNSYFPNPILGVYDNSLHFLDFDRSE---SCFEKWVMKEGSWTKQLSVGPILGVLRALEF-WKNGSFFIESN------TN 318 (357)
Q Consensus 249 ~~~~~~~~~l~~~~g~L~l~~~~~~~---~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~-~~~~~i~~~~~------~~ 318 (357)
.. +....+++.+|+|++++..... .+++..--+...|.....+... ....++ .-++.+|++.. -.
T Consensus 464 ~~--R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~g~~~~~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 464 TR--RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAVGVVVLGGKLYAVGGFDGNNNLN 538 (571)
T ss_pred cc--cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccccEEEECCEEEEEecccCccccc
Confidence 33 2334688999999999986532 2233333333889987444322 222222 24577777754 23
Q ss_pred eEEEEECCCCcEEEee
Q 037345 319 QLLLYDPNTRALRDVG 334 (357)
Q Consensus 319 ~~~~yd~~t~~~~~v~ 334 (357)
.+-.||+++++|+.+.
T Consensus 539 ~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 539 TVECYDPETDTWTEVT 554 (571)
T ss_pred eeEEcCCCCCceeeCC
Confidence 6889999999999983
No 8
>PLN02193 nitrile-specifier protein
Probab=98.93 E-value=2e-07 Score=88.86 Aligned_cols=203 Identities=10% Similarity=0.031 Sum_probs=119.7
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
.++++||.|.+|..+|+......... .......++ + +++.+...... .....++ +|++.+++|+.+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~---~~~~~v~~~---~--~lYvfGG~~~~---~~~ndv~--~yD~~t~~W~~l~ 260 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSC---LGVRMVSIG---S--TLYVFGGRDAS---RQYNGFY--SFDTTTNEWKLLT 260 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcc---cceEEEEEC---C--EEEEECCCCCC---CCCccEE--EEECCCCEEEEcC
Confidence 47899999999998875421111000 001111222 1 22332221111 1123445 9999999999876
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEecCCCCC--CCCCCeEEEECCeEEEEEec
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIKCPDNS--YFPNPILGVYDNSLHFLDFD 271 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~lP~~~--~~~~~~l~~~~g~L~l~~~~ 271 (357)
.....+.+ +. ....+..++.+|.+.+... ....+.+||+.+.+|+.++.|... .+....++..+|+++++...
T Consensus 261 ~~~~~P~~--R~-~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~ 337 (470)
T PLN02193 261 PVEEGPTP--RS-FHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGF 337 (470)
T ss_pred cCCCCCCC--cc-ceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECC
Confidence 43211111 11 1456678999999876532 234688999999999988765432 23335667789999988764
Q ss_pred CCCCeEEEEEEcC--CeeEEEEEEccC-CceeEEEEEeeCCcEEEEeeC---------------CeEEEEECCCCcEEEe
Q 037345 272 RSESCFEKWVMKE--GSWTKQLSVGPI-LGVLRALEFWKNGSFFIESNT---------------NQLLLYDPNTRALRDV 333 (357)
Q Consensus 272 ~~~~~~~iW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~~~i~~~~~~---------------~~~~~yd~~t~~~~~v 333 (357)
.....-++|+++- .+|.+...+... .......++..++.||+.... ..+..||++|++|+++
T Consensus 338 ~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 338 NGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 3222345777775 899987655311 111222233345677776431 2589999999999999
Q ss_pred e
Q 037345 334 G 334 (357)
Q Consensus 334 ~ 334 (357)
.
T Consensus 418 ~ 418 (470)
T PLN02193 418 D 418 (470)
T ss_pred c
Confidence 4
No 9
>PHA03098 kelch-like protein; Provisional
Probab=98.91 E-value=1.9e-07 Score=90.81 Aligned_cols=192 Identities=11% Similarity=0.051 Sum_probs=119.7
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
.++.+||.|++|..+|+.+...... .....+ + +++.+...... .....++ +|+..+++|+.++
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~-------~~~~~~---~--~lyv~GG~~~~---~~~~~v~--~yd~~~~~W~~~~ 374 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNP-------GVTVFN---N--RIYVIGGIYNS---ISLNTVE--SWKPGESKWREEP 374 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccc-------eEEEEC---C--EEEEEeCCCCC---EecceEE--EEcCCCCceeeCC
Confidence 5789999999999999877532211 111121 1 23333222111 1234566 9999999999876
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCC---CcCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEec
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFD 271 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~ 271 (357)
..+. +. . ....+.++|.+|.+.+... ....+..||+.+++|+.++ +|... .....+..+|+|++++..
T Consensus 375 ~lp~---~r--~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 375 PLIF---PR--Y-NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred CcCc---CC--c-cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCceEEEECCEEEEECCc
Confidence 4332 21 1 1456788999999877421 1257899999999999764 44332 223567789999998864
Q ss_pred CCCC----eEEEEEEcC--CeeEEEEEEccCCceeEEEEEeeCCcEEEEee------CCeEEEEECCCCcEEEee
Q 037345 272 RSES----CFEKWVMKE--GSWTKQLSVGPILGVLRALEFWKNGSFFIESN------TNQLLLYDPNTRALRDVG 334 (357)
Q Consensus 272 ~~~~----~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~yd~~t~~~~~v~ 334 (357)
.... .-.+|..+- .+|.+...++.. ......+..++.+|++.. ...+..||+++++|+.+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 2111 123677765 899986544321 111112223678888754 246899999999999884
No 10
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.91 E-value=9.1e-10 Score=69.21 Aligned_cols=40 Identities=28% Similarity=0.633 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCChHH
Q 037345 4 NDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRF 43 (357)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F 43 (357)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 4689999999999999999999999999999999988743
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.90 E-value=4.5e-07 Score=86.66 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=117.1
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
....+||.+++|..+|+++...... .....+ + ++..+..... ...++ .|+..+++|..++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~-------~~v~~~---~--~iYviGG~~~------~~sve--~ydp~~n~W~~~~ 347 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYA-------SGVPAN---N--KLYVVGGLPN------PTSVE--RWFHGDAAWVNMP 347 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcc-------eEEEEC---C--EEEEECCcCC------CCceE--EEECCCCeEEECC
Confidence 4577999999999999887543211 111222 1 3333322211 13567 9999999999876
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEEECCeEEEEEecCCCC
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSES 275 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~ 275 (357)
..+. +... ...+.++|.+|.+.+.......+..||+.+++|+.++.++.. ......+..+|+|++++.
T Consensus 348 ~l~~-~r~~-----~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~GG----- 415 (480)
T PHA02790 348 SLLK-PRCN-----PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLVGR----- 415 (480)
T ss_pred CCCC-CCcc-----cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEECC-----
Confidence 4332 1111 567889999999987543335678999999999987533322 222456788999999874
Q ss_pred eEEEEEEcCCeeEEEEEEccCCceeEEEEEeeCCcEEEEeeC------CeEEEEECCCCcEEEe
Q 037345 276 CFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNT------NQLLLYDPNTRALRDV 333 (357)
Q Consensus 276 ~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~yd~~t~~~~~v 333 (357)
..+++-.+...|.....+.. .....-.+.-+|.||++... ..+-.||+++++|+..
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~--~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIY--PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ceEEecCCCCcEeEcCCCCC--CccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 23444444489997654432 12222223346788888541 3588999999999754
No 12
>PHA02713 hypothetical protein; Provisional
Probab=98.87 E-value=1.6e-07 Score=91.13 Aligned_cols=192 Identities=13% Similarity=0.096 Sum_probs=118.2
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
.+..+||.|++|..+++.|...... .....+ + +|+.+...... ......++ .|+..++.|..++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-------~~a~l~---~--~IYviGG~~~~--~~~~~~v~--~Yd~~~n~W~~~~ 336 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-------ASAIVD---N--EIIIAGGYNFN--NPSLNKVY--KINIENKIHVELP 336 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-------EEEEEC---C--EEEEEcCCCCC--CCccceEE--EEECCCCeEeeCC
Confidence 4578999999999999887643211 111111 1 33333221111 01124566 9999999998776
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEecC
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFDR 272 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~ 272 (357)
..+. +... ...+.++|.+|.+.+... ....+-+||+.+++|+.++ +|.... ....+.++|+|++++...
T Consensus 337 ~m~~-~R~~-----~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~--~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 337 PMIK-NRCR-----FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS--SYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCcc-hhhc-----eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc--cccEEEECCEEEEEeCCC
Confidence 4322 1111 567889999999987642 1346899999999999864 444432 235678899999998643
Q ss_pred CCC-------------------eEEEEEEcC--CeeEEEEEEccCCceeEEEEEeeCCcEEEEeeC-------CeEEEEE
Q 037345 273 SES-------------------CFEKWVMKE--GSWTKQLSVGPILGVLRALEFWKNGSFFIESNT-------NQLLLYD 324 (357)
Q Consensus 273 ~~~-------------------~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~yd 324 (357)
... .-.+...+- ..|.....+... ...+-.+.-+|.||++... ..+..||
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~--r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG--TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc--cccCcEEEECCEEEEEeCCCCCCccceeEEEec
Confidence 110 112444443 889876654322 1222233346888888541 2367999
Q ss_pred CCC-CcEEEe
Q 037345 325 PNT-RALRDV 333 (357)
Q Consensus 325 ~~t-~~~~~v 333 (357)
+++ ++|+.+
T Consensus 487 p~~~~~W~~~ 496 (557)
T PHA02713 487 TNTYNGWELI 496 (557)
T ss_pred CCCCCCeeEc
Confidence 999 899988
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.75 E-value=7.4e-09 Score=65.44 Aligned_cols=45 Identities=38% Similarity=0.651 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCChHHHHHHh
Q 037345 4 NDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHI 48 (357)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~ 48 (357)
+.+||+|++.+||.+|+++++++++.|||+|++++.++.+-..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 457999999999999999999999999999999999988766543
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.74 E-value=6.6e-06 Score=75.47 Aligned_cols=213 Identities=13% Similarity=0.145 Sum_probs=121.6
Q ss_pred cccceEEEeec-CCCeEEEEec--cccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCC---CCCC
Q 037345 102 NCNGLFCLHDK-NSNRISIWNL--ATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDN---TRKD 175 (357)
Q Consensus 102 s~~GLll~~~~-~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~---~~~~ 175 (357)
..++-|.+..+ ....++++++ .+++|..+|+++...... ......+ + +|..+....... ....
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~------~~~~~~~---~--~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQ------AVAAAID---G--KLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCccc------ceEEEEC---C--EEEEEeCCCCCCCCCccee
Confidence 34555544332 2245678874 678899999876321111 1111122 1 333332221110 0001
Q ss_pred CcceEEEEEEcCCCceeecccCCcccccccCCCCCcce-EECceEEEEEccCCC--------------------------
Q 037345 176 SVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENT-YLDRICYWIAWRYNN-------------------------- 228 (357)
Q Consensus 176 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~~-------------------------- 228 (357)
...++ .|+..+++|+.++... +..... ...+ .++|.||.+.+....
T Consensus 84 ~~~v~--~Yd~~~~~W~~~~~~~--p~~~~~---~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 84 FDDVY--RYDPKKNSWQKLDTRS--PVGLLG---ASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred cccEE--EEECCCCEEecCCCCC--CCcccc---eeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 23556 9999999999986321 122100 2233 689999998764310
Q ss_pred ----------cCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEecCC--CCeEEEEEEc--C--CeeEEEE
Q 037345 229 ----------CQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFDRS--ESCFEKWVMK--E--GSWTKQL 291 (357)
Q Consensus 229 ----------~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~~--~~~~~iW~l~--~--~~W~~~~ 291 (357)
...+.+||+.+++|+.++ +|... .....++..+|+|+++..... ....++|..+ . ..|.+..
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~ 235 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP 235 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC
Confidence 147899999999999874 45322 223467788999999986431 1234566554 2 6899876
Q ss_pred EEccCC-----ceeEEEEEeeCCcEEEEeeC-----------------------CeEEEEECCCCcEEEe
Q 037345 292 SVGPIL-----GVLRALEFWKNGSFFIESNT-----------------------NQLLLYDPNTRALRDV 333 (357)
Q Consensus 292 ~i~~~~-----~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v 333 (357)
.++... .......+.-++.||++... ..+-.||+++++|+++
T Consensus 236 ~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 236 PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence 664221 11122223346788887531 1356899999999988
No 15
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.73 E-value=1e-06 Score=85.42 Aligned_cols=194 Identities=13% Similarity=0.139 Sum_probs=126.8
Q ss_pred CeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeec
Q 037345 115 NRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYL 194 (357)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~ 194 (357)
..+-.+||.+++|..+.+++..... .+.+.-. + +|..+..... .......++ .|++.+++|..+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~--------~~~~~~~--~--~lYv~GG~~~--~~~~l~~ve--~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCR--------VGVAVLN--G--KLYVVGGYDS--GSDRLSSVE--RYDPRTNQWTPV 364 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccccc--------ccEEEEC--C--EEEEEccccC--CCcccceEE--EecCCCCceecc
Confidence 3456899999999999988864332 2222211 1 4444433331 112345777 999999999986
Q ss_pred ccCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEec
Q 037345 195 KANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFD 271 (357)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~ 271 (357)
+.- ...+. ....+.++|.+|-+.+.+. .-..+-.||+.+++|+.+. ++.. ......++.+|+|++++..
T Consensus 365 a~M-----~~~R~-~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 365 APM-----NTKRS-DFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--RSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCc-----cCccc-cceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--eeeeEEEEECCEEEEEcCc
Confidence 642 22111 1567889999999987652 3447999999999999875 5543 3345778999999999985
Q ss_pred CCC----CeEEEEEEcCCeeEEEEEEccCCceeEEEEEeeCCcEEEEee------CCeEEEEECCCCcEEEee
Q 037345 272 RSE----SCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESN------TNQLLLYDPNTRALRDVG 334 (357)
Q Consensus 272 ~~~----~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~yd~~t~~~~~v~ 334 (357)
... .+++..--..+.|+..-.+..... ...+++ -++.||.+.. ...+-.||+++++|..+.
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccc-cceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 422 233333333388998776654311 122333 4678888754 124788999999999993
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=8.7e-09 Score=62.72 Aligned_cols=39 Identities=44% Similarity=0.699 Sum_probs=36.3
Q ss_pred CcHHHHHHHHhcCCccccchhhcchHhHHhhcCChHHHH
Q 037345 7 FSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVS 45 (357)
Q Consensus 7 LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 45 (357)
||+|++.+||.+|+++++.++++|||+|+.++.++.|-.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.63 E-value=8.1e-06 Score=74.12 Aligned_cols=148 Identities=14% Similarity=0.172 Sum_probs=94.1
Q ss_pred ceEEEEEEcCCCce----eecccCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEec-CCCC
Q 037345 178 STEVILHTLSTDSW----RYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIK-CPDN 250 (357)
Q Consensus 178 ~~~~~vyss~t~~W----~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~-lP~~ 250 (357)
.++ .|+..++.| +.++..| .+. . ...++.++|.+|.+.+... ....+.+||+.+++|+.++ +|..
T Consensus 89 ~v~--~~d~~~~~w~~~~~~~~~lp---~~~--~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 160 (323)
T TIGR03548 89 SVY--RITLDESKEELICETIGNLP---FTF--E-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE 160 (323)
T ss_pred eEE--EEEEcCCceeeeeeEcCCCC---cCc--c-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC
Confidence 455 899999988 4444322 121 1 1456788999999986421 2347899999999999875 5643
Q ss_pred CCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--CeeEEEEEEccC-Cc--eeEEE-EEeeCCcEEEEeeC-------
Q 037345 251 SYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GSWTKQLSVGPI-LG--VLRAL-EFWKNGSFFIESNT------- 317 (357)
Q Consensus 251 ~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~-~~--~~~~~-~~~~~~~i~~~~~~------- 317 (357)
. ......+..+|+|+++.........+++..+- .+|.+...+... .. ..... ....++.||++...
T Consensus 161 ~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 239 (323)
T TIGR03548 161 P-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYND 239 (323)
T ss_pred C-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHH
Confidence 2 22235568899999998753333345666665 899876543211 01 11111 12235677776431
Q ss_pred -------------------------------CeEEEEECCCCcEEEee
Q 037345 318 -------------------------------NQLLLYDPNTRALRDVG 334 (357)
Q Consensus 318 -------------------------------~~~~~yd~~t~~~~~v~ 334 (357)
..+..||+++++|+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 240 AVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 35999999999999985
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.60 E-value=7.6e-06 Score=75.86 Aligned_cols=217 Identities=13% Similarity=0.125 Sum_probs=120.6
Q ss_pred ecccceEEEeec-CCCeEEEEecc--ccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEe-cCCCCCCCC
Q 037345 101 GNCNGLFCLHDK-NSNRISIWNLA--TREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNL-TDDNTRKDS 176 (357)
Q Consensus 101 ~s~~GLll~~~~-~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~-~~~~~~~~~ 176 (357)
+..++-|.+..+ ....++++++. +++|..+|+.+...... ......+ +...|+.-... .........
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~------~~~v~~~---~~IYV~GG~~~~~~~~~~~~~ 105 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQ------AVAAFID---GKLYVFGGIGKTNSEGSPQVF 105 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCccc------ceEEEEC---CEEEEEcCCCCCCCCCceeEc
Confidence 445666655432 23356788775 57899998765321111 1111111 22222221111 000000112
Q ss_pred cceEEEEEEcCCCceeecccCCcccccccCCCCCcceE-ECceEEEEEccCC----------------------------
Q 037345 177 VSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTY-LDRICYWIAWRYN---------------------------- 227 (357)
Q Consensus 177 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~---------------------------- 227 (357)
..++ +|+..+++|+.++... +..... ...+. .+|.||.+.+...
T Consensus 106 ~~v~--~YD~~~n~W~~~~~~~--p~~~~~---~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 106 DDVY--KYDPKTNSWQKLDTRS--PVGLAG---HVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred ccEE--EEeCCCCEEEeCCCCC--CCcccc---eEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 3455 9999999999987421 122110 23344 7999999976431
Q ss_pred --------CcCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEecC--CCCeEEEEEEc--C--CeeEEEEE
Q 037345 228 --------NCQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFDR--SESCFEKWVMK--E--GSWTKQLS 292 (357)
Q Consensus 228 --------~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~--~--~~W~~~~~ 292 (357)
....+.+||+.+++|+.+. +|... .....++..+++|+++.... .....++|..+ . .+|++...
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 0246999999999999874 55322 22235677899999998642 22445666543 2 78998776
Q ss_pred EccCC------ceeEEEEEeeCCcEEEEeeCC-----------------------eEEEEECCCCcEEEee
Q 037345 293 VGPIL------GVLRALEFWKNGSFFIESNTN-----------------------QLLLYDPNTRALRDVG 334 (357)
Q Consensus 293 i~~~~------~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~ 334 (357)
++... ..........++.||++.... .+-.||+++++|+++.
T Consensus 258 ~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 258 LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 64321 111122233467787775310 1347999999999883
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.45 E-value=1e-05 Score=78.73 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=94.8
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEec-CCCCCCCCCCe
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIK-CPDNSYFPNPI 257 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~ 257 (357)
+..|+..+++|..++..+. +... ...+.++|.+|.+.+... ....+..||+.+.+|+.++ +|... ....
T Consensus 313 v~~yd~~~~~W~~~~~~~~-~R~~-----~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--~~~~ 384 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIY-PRKN-----PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--YNPC 384 (534)
T ss_pred EEEEeCCCCeeeECCCCCc-cccc-----ceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--ccce
Confidence 3499999999988765332 1111 567789999999987542 2346889999999999764 44332 3345
Q ss_pred EEEECCeEEEEEecCCC--CeEEEEEEc--CCeeEEEEEEccCCceeEEEEEeeCCcEEEEeeC---------CeEEEEE
Q 037345 258 LGVYDNSLHFLDFDRSE--SCFEKWVMK--EGSWTKQLSVGPILGVLRALEFWKNGSFFIESNT---------NQLLLYD 324 (357)
Q Consensus 258 l~~~~g~L~l~~~~~~~--~~~~iW~l~--~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~yd 324 (357)
.+..+|++++++..... ..-.++..+ ..+|.+...++. ......++..++.+|++... ..+..||
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cccCceEEEECCEEEEECCccCCCCCcccceEEEec
Confidence 67889999999874211 112344444 489988654332 12222333456778877531 2389999
Q ss_pred CCCCcEEEee
Q 037345 325 PNTRALRDVG 334 (357)
Q Consensus 325 ~~t~~~~~v~ 334 (357)
+++++|+++.
T Consensus 463 ~~~~~W~~~~ 472 (534)
T PHA03098 463 PVTNKWTELS 472 (534)
T ss_pred CCCCceeeCC
Confidence 9999999983
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.43 E-value=2.5e-05 Score=74.78 Aligned_cols=142 Identities=9% Similarity=0.081 Sum_probs=98.7
Q ss_pred cceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCcceeEec-CCCCCCCCC
Q 037345 177 VSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIK-CPDNSYFPN 255 (357)
Q Consensus 177 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~-lP~~~~~~~ 255 (357)
..++ .|++.+++|..++..+. +... ...+.++|.+|-+.+.. ....+-.||+.+++|..++ +|... ..
T Consensus 287 ~~v~--~Ydp~~~~W~~~~~m~~-~r~~-----~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r--~~ 355 (480)
T PHA02790 287 NNAI--AVNYISNNWIPIPPMNS-PRLY-----ASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPR--CN 355 (480)
T ss_pred CeEE--EEECCCCEEEECCCCCc-hhhc-----ceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCC--cc
Confidence 3566 99999999998875432 2211 45678999999998764 2356889999999999774 44332 23
Q ss_pred CeEEEECCeEEEEEecCC-CCeEEEEEEcCCeeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 256 PILGVYDNSLHFLDFDRS-ESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 256 ~~l~~~~g~L~l~~~~~~-~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
...+..+|+|++++.... ...++.+-.+...|.....++. .......+.-+|.||++. +..-.||+++++|+.+
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVG--RNAEFYCESSNTWTLI 430 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEEC--CceEEecCCCCcEeEc
Confidence 467889999999987532 2456666555589988544432 222233334568888875 3467899999999998
No 21
>PLN02153 epithiospecifier protein
Probab=98.42 E-value=2.4e-05 Score=71.59 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=91.3
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEec-CCC---CCCCC
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIK-CPD---NSYFP 254 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~-lP~---~~~~~ 254 (357)
+++|+..+++|+.+..... .+.........+.++|.||.+.+... ....+.+||+.+.+|+.++ ++. .....
T Consensus 52 ~~~yd~~~~~W~~~~~~~~--~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANGD--VPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred EEEEECCCCEEEEcCccCC--CCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 4499999999998664321 11110001346788999999987532 1236889999999999874 311 11122
Q ss_pred CCeEEEECCeEEEEEecCCCC------e-EEEEEEcC--CeeEEEEEEcc-CCceeEEEEEeeCCcEEEEee--------
Q 037345 255 NPILGVYDNSLHFLDFDRSES------C-FEKWVMKE--GSWTKQLSVGP-ILGVLRALEFWKNGSFFIESN-------- 316 (357)
Q Consensus 255 ~~~l~~~~g~L~l~~~~~~~~------~-~~iW~l~~--~~W~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~-------- 316 (357)
....+..+++|+++....... . -.+++++- .+|........ ...........-++++|++..
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~g 209 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPG 209 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccC
Confidence 235677899999987753111 1 24555654 88997654321 111111111223566766531
Q ss_pred ------CCeEEEEECCCCcEEEee
Q 037345 317 ------TNQLLLYDPNTRALRDVG 334 (357)
Q Consensus 317 ------~~~~~~yd~~t~~~~~v~ 334 (357)
...+..||+++++|+++.
T Consensus 210 G~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 210 GKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CccceecCceEEEEcCCCcEEecc
Confidence 146899999999999984
No 22
>PLN02193 nitrile-specifier protein
Probab=98.41 E-value=7.4e-05 Score=71.34 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=92.0
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC--CcCEEEEEECCCcceeEecCC-CCC-CCCCC
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN--NCQEILSFHMRDEAFHVIKCP-DNS-YFPNP 256 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~i~~fD~~~e~~~~i~lP-~~~-~~~~~ 256 (357)
+++|+..+++|..++.... .+.........+.+++.||.+.+... ....+.+||+.+.+|+.+... ... .+...
T Consensus 195 v~~yD~~~~~W~~~~~~g~--~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 195 LYVFDLETRTWSISPATGD--VPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred EEEEECCCCEEEeCCCCCC--CCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 4499999999997653211 11110001356788999999876532 124688999999999987432 111 22224
Q ss_pred eEEEECCeEEEEEecCCC-CeEEEEEEcC--CeeEEEEEEccC-CceeEEEEEeeCCcEEEEee-----CCeEEEEECCC
Q 037345 257 ILGVYDNSLHFLDFDRSE-SCFEKWVMKE--GSWTKQLSVGPI-LGVLRALEFWKNGSFFIESN-----TNQLLLYDPNT 327 (357)
Q Consensus 257 ~l~~~~g~L~l~~~~~~~-~~~~iW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~~~i~~~~~-----~~~~~~yd~~t 327 (357)
.++..+++|+++...... ..-.++.++- .+|......... ........+..+++++++.. ...+..||+++
T Consensus 273 ~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 273 SMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCC
Confidence 566789999998865321 2224555554 899875432111 11111222223577777643 25699999999
Q ss_pred CcEEEee
Q 037345 328 RALRDVG 334 (357)
Q Consensus 328 ~~~~~v~ 334 (357)
++|+++.
T Consensus 353 ~~W~~~~ 359 (470)
T PLN02193 353 DKWTQVE 359 (470)
T ss_pred CEEEEec
Confidence 9999983
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.25 E-value=0.00049 Score=63.85 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=88.7
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC-----CcCEEEEEECCCcceeEec-CCCCCC-C
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN-----NCQEILSFHMRDEAFHVIK-CPDNSY-F 253 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-----~~~~i~~fD~~~e~~~~i~-lP~~~~-~ 253 (357)
+++|+..++.|+.++..+. . +. .. ...+.++|.||.+.+... .......||+++.+|+.++ +|.... .
T Consensus 191 v~~YD~~t~~W~~~~~~p~-~-~~-~~--~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~ 265 (376)
T PRK14131 191 VLSYDPSTNQWKNAGESPF-L-GT-AG--SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS 265 (376)
T ss_pred EEEEECCCCeeeECCcCCC-C-CC-Cc--ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC
Confidence 3499999999998774332 1 11 11 456778999999986421 1234566788999998764 554321 1
Q ss_pred -----CCCeEEEECCeEEEEEecCCC--------------------CeEEEEEEcCCeeEEEEEEccCCceeEEEEEeeC
Q 037345 254 -----PNPILGVYDNSLHFLDFDRSE--------------------SCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKN 308 (357)
Q Consensus 254 -----~~~~l~~~~g~L~l~~~~~~~--------------------~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 308 (357)
.....+..+|+|+++...... ...+++-.+...|.+...++.. .....++.-+
T Consensus 266 ~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~ 343 (376)
T PRK14131 266 SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG--LAYGVSVSWN 343 (376)
T ss_pred cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC--ccceEEEEeC
Confidence 111245689999998764210 1345666666889877655422 2222344456
Q ss_pred CcEEEEeeC-------CeEEEEECCCCcEEE
Q 037345 309 GSFFIESNT-------NQLLLYDPNTRALRD 332 (357)
Q Consensus 309 ~~i~~~~~~-------~~~~~yd~~t~~~~~ 332 (357)
++||++... ..+..|+++++++..
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 888887541 267888888777653
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.20 E-value=0.0001 Score=66.99 Aligned_cols=154 Identities=15% Similarity=0.155 Sum_probs=89.6
Q ss_pred EecccceEEEeecC-----CCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCC
Q 037345 100 LGNCNGLFCLHDKN-----SNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRK 174 (357)
Q Consensus 100 ~~s~~GLll~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~ 174 (357)
....+|.|.+..+. ...+.++||.|++|..+|+.+...... .....++ + ++..+......
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~------~~~~~~~---~--~iYv~GG~~~~---- 183 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ------PVCVKLQ---N--ELYVFGGGSNI---- 183 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc------ceEEEEC---C--EEEEEcCCCCc----
Confidence 44567777655432 246799999999999998755321111 1111221 1 23333221111
Q ss_pred CCcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCC--------------------------
Q 037345 175 DSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNN-------------------------- 228 (357)
Q Consensus 175 ~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~-------------------------- 228 (357)
.....+ +|+..+++|+.++..+....+.........+..+|.+|.+.+....
T Consensus 184 ~~~~~~--~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 184 AYTDGY--KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred cccceE--EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 112345 9999999999887532111221111002234557899988764310
Q ss_pred --------cCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEec
Q 037345 229 --------CQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFD 271 (357)
Q Consensus 229 --------~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~ 271 (357)
...+.+||+.+++|+.++ +|... .....++..+|+|+++...
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA-RCGAALLLTGNNIFSINGE 312 (323)
T ss_pred CCccccCcCceEEEEECCCCeeeEcccccccc-cCchheEEECCEEEEEecc
Confidence 146999999999999885 44322 2234678889999999864
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.13 E-value=0.0011 Score=60.82 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=79.0
Q ss_pred ceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC---CcCEE--EEEECCCcceeEec-CCCCC
Q 037345 178 STEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN---NCQEI--LSFHMRDEAFHVIK-CPDNS 251 (357)
Q Consensus 178 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~i--~~fD~~~e~~~~i~-lP~~~ 251 (357)
.++ +|+..+++|+.++..+. .+. .....+.++|.||.+.+... ....+ ..+|.++.+|+.++ +|...
T Consensus 169 ~v~--~YDp~t~~W~~~~~~p~--~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r 241 (346)
T TIGR03547 169 NVL--SYDPSTNQWRNLGENPF--LGT---AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK 241 (346)
T ss_pred eEE--EEECCCCceeECccCCC--CcC---CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence 566 99999999999874331 111 11455678999999976531 11233 34455777998763 44332
Q ss_pred CC-----CCCeEEEECCeEEEEEecCC--------------------CCeEEEEEEcCCeeEEEEEEccCCceeEEEEEe
Q 037345 252 YF-----PNPILGVYDNSLHFLDFDRS--------------------ESCFEKWVMKEGSWTKQLSVGPILGVLRALEFW 306 (357)
Q Consensus 252 ~~-----~~~~l~~~~g~L~l~~~~~~--------------------~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~ 306 (357)
.. .....+..+|+|+++..... ....+++..+...|++...++.. ......+.
T Consensus 242 ~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~ 319 (346)
T TIGR03547 242 SSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--LAYGVSVS 319 (346)
T ss_pred CCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC--ceeeEEEE
Confidence 11 11225678999999886421 02567888877889987765432 22223334
Q ss_pred eCCcEEEEee
Q 037345 307 KNGSFFIESN 316 (357)
Q Consensus 307 ~~~~i~~~~~ 316 (357)
-++.||++..
T Consensus 320 ~~~~iyv~GG 329 (346)
T TIGR03547 320 WNNGVLLIGG 329 (346)
T ss_pred cCCEEEEEec
Confidence 5678888753
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.00 E-value=0.00012 Score=61.82 Aligned_cols=210 Identities=12% Similarity=0.083 Sum_probs=121.9
Q ss_pred CCeEEEEeccccchhcCCCCCCCCC-Ccccc-----ccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcC
Q 037345 114 SNRISIWNLATREFRALPKWKGEIP-RHKWV-----YQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLS 187 (357)
Q Consensus 114 ~~~~~V~NP~T~~~~~LP~~~~~~~-~~~~~-----~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~ 187 (357)
...+.|.|-.+-+|..+|+.-.+.. ...+. ........|+. |+..-....+ ......... -|+.+
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d-----~~yvWGGRND--~egaCN~Ly--~fDp~ 113 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD-----KAYVWGGRND--DEGACNLLY--EFDPE 113 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc-----eEEEEcCccC--cccccceee--eeccc
Confidence 3457899999999999998533221 11110 00111122221 1111111111 112233434 89999
Q ss_pred CCceeecccCCcccccccCCCCCcceEECceEEEEEccCC----CcCEEEEEECCCcceeEec---CCCCCCCCCCeEEE
Q 037345 188 TDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN----NCQEILSFHMRDEAFHVIK---CPDNSYFPNPILGV 260 (357)
Q Consensus 188 t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~----~~~~i~~fD~~~e~~~~i~---lP~~~~~~~~~l~~ 260 (357)
|+.|++.+..- ..|-.++. .++++++..+|-+.+... ...-+.++|+++.+|+.+. .|+.-..++ ...+
T Consensus 114 t~~W~~p~v~G--~vPgaRDG-HsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH-~a~~ 189 (392)
T KOG4693|consen 114 TNVWKKPEVEG--FVPGARDG-HSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH-TASV 189 (392)
T ss_pred cccccccceee--ecCCccCC-ceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh-hhhh
Confidence 99998854321 23333332 567788889998875432 2347899999999999986 355442232 2345
Q ss_pred ECCeEEEEEecC----------CCCeEEEEEEcC--CeeEEEEEEccC-CceeEEEEEeeCCcEEEEee--------CCe
Q 037345 261 YDNSLHFLDFDR----------SESCFEKWVMKE--GSWTKQLSVGPI-LGVLRALEFWKNGSFFIESN--------TNQ 319 (357)
Q Consensus 261 ~~g~L~l~~~~~----------~~~~~~iW~l~~--~~W~~~~~i~~~-~~~~~~~~~~~~~~i~~~~~--------~~~ 319 (357)
++|..+++.... +...-+|-.|+- +.|.+-..-... .+..+...+..+|++|+... -..
T Consensus 190 ~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~Hfnd 269 (392)
T KOG4693|consen 190 IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFND 269 (392)
T ss_pred ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcc
Confidence 567777776532 223344555554 888876332221 13345556667899988754 357
Q ss_pred EEEEECCCCcEEEeeec
Q 037345 320 LLLYDPNTRALRDVGLG 336 (357)
Q Consensus 320 ~~~yd~~t~~~~~v~~~ 336 (357)
++.||++|..|.+|..+
T Consensus 270 Ly~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 270 LYCFDPKTSMWSVISVR 286 (392)
T ss_pred eeecccccchheeeecc
Confidence 99999999999999554
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.54 E-value=0.0018 Score=55.00 Aligned_cols=135 Identities=13% Similarity=0.213 Sum_probs=87.8
Q ss_pred CcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC-----------CcCEEEEEECCCcceeE
Q 037345 176 SVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN-----------NCQEILSFHMRDEAFHV 244 (357)
Q Consensus 176 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-----------~~~~i~~fD~~~e~~~~ 244 (357)
.++-++++++..|-.||.+...-. +-.. +++ ..++..+|.+|-+.++.. ....|++||+.++.|..
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~-Pprw-RDF-H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r 230 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGD-PPRW-RDF-HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTR 230 (392)
T ss_pred hhhccceeEeccceeeeehhccCC-Cchh-hhh-hhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccccccc
Confidence 445555689999999999764321 1111 111 567788899999876542 24589999999999986
Q ss_pred ec----CCCCCCCCCCeEEEECCeEEEEEecC---CCCeEEEEEEcC--CeeEEEEEEccCC-ceeEEEEEeeCCcEEEE
Q 037345 245 IK----CPDNSYFPNPILGVYDNSLHFLDFDR---SESCFEKWVMKE--GSWTKQLSVGPIL-GVLRALEFWKNGSFFIE 314 (357)
Q Consensus 245 i~----lP~~~~~~~~~l~~~~g~L~l~~~~~---~~~~~~iW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~~~i~~~ 314 (357)
.+ .|... ......+++|+++++.... ...--++|.++- ..|+++..-+... ...+-.++..++++++.
T Consensus 231 ~p~~~~~P~GR--RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LF 308 (392)
T KOG4693|consen 231 TPENTMKPGGR--RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLF 308 (392)
T ss_pred CCCCCcCCCcc--cccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEe
Confidence 53 22222 2235578899999987643 223347899988 8899877655322 23445555566777776
Q ss_pred e
Q 037345 315 S 315 (357)
Q Consensus 315 ~ 315 (357)
.
T Consensus 309 G 309 (392)
T KOG4693|consen 309 G 309 (392)
T ss_pred c
Confidence 4
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.39 E-value=0.0088 Score=54.00 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=90.6
Q ss_pred EEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC------CcCEEEEEECCCcceeEecCCCCC--CC
Q 037345 182 ILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN------NCQEILSFHMRDEAFHVIKCPDNS--YF 253 (357)
Q Consensus 182 ~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~------~~~~i~~fD~~~e~~~~i~lP~~~--~~ 253 (357)
.+|+..|++|..+...-. +-+... .+.|.....|.-+.+... ...-+.+||+++=+|+.+..+... .+
T Consensus 157 W~fd~~trkweql~~~g~-PS~RSG---HRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR 232 (521)
T KOG1230|consen 157 WLFDLKTRKWEQLEFGGG-PSPRSG---HRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR 232 (521)
T ss_pred eeeeeccchheeeccCCC-CCCCcc---ceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC
Confidence 389999999998753211 111101 344444443333332211 123689999999999998765532 23
Q ss_pred CCCeEEEE-CCeEEEEEecC----------CCCeEEEEEEcC-------CeeEEEEEEccC--CceeEEEEEeeCCcEEE
Q 037345 254 PNPILGVY-DNSLHFLDFDR----------SESCFEKWVMKE-------GSWTKQLSVGPI--LGVLRALEFWKNGSFFI 313 (357)
Q Consensus 254 ~~~~l~~~-~g~L~l~~~~~----------~~~~~~iW~l~~-------~~W~~~~~i~~~--~~~~~~~~~~~~~~i~~ 313 (357)
..++..+. +|.+.|..... ....-+.|.|+- ..|.++.-++.. .....-++++.++.-++
T Consensus 233 SGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~ 312 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALF 312 (521)
T ss_pred CcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEE
Confidence 33556665 88887766432 345568999986 467777666533 22334455565555443
Q ss_pred Eee---------------CCeEEEEECCCCcEEEeeec
Q 037345 314 ESN---------------TNQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 314 ~~~---------------~~~~~~yd~~t~~~~~v~~~ 336 (357)
... .+.++.||+..++|.+.+++
T Consensus 313 FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq 350 (521)
T KOG1230|consen 313 FGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQ 350 (521)
T ss_pred ecceecccccchhhhhhhhhhhhheecccchhhHhhhc
Confidence 321 24699999999999887554
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=62.47 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=35.6
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCChH
Q 037345 4 NDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPR 42 (357)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~ 42 (357)
+..|||||+..||+.|+.|+|.+...|||+|+++.++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 468999999999999999999999999999999887643
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.19 E-value=0.019 Score=50.62 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=37.8
Q ss_pred CCCCc----HHHHHHHHhcCCccccchhhcchHhHHhhcCChHHHH
Q 037345 4 NDDFS----EDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVS 45 (357)
Q Consensus 4 ~~~LP----~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~ 45 (357)
+..|| +++.+.||+.|...+|..|..|||+|+.+++++-.-+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 45789 9999999999999999999999999999999876443
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.86 E-value=0.047 Score=52.37 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=99.8
Q ss_pred EEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC---CcCEEEEEECCCcceeEecCCCCC--CCC
Q 037345 180 EVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIKCPDNS--YFP 254 (357)
Q Consensus 180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~lP~~~--~~~ 254 (357)
.+++++.++..|......-..+.+. . ....+.++..||.+.+... ....+.+||+.+.+|.....-... ...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r--~-g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~ 165 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR--Y-GHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA 165 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc--c-ceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc
Confidence 3558898998997754332212221 1 1567888899999887652 234899999999999986532221 223
Q ss_pred CCeEEEECCeEEEEEecCCC--CeEEEEEEcC--CeeEEEEEEccCC-ceeEEEEEeeCCcEEEEee-C------CeEEE
Q 037345 255 NPILGVYDNSLHFLDFDRSE--SCFEKWVMKE--GSWTKQLSVGPIL-GVLRALEFWKNGSFFIESN-T------NQLLL 322 (357)
Q Consensus 255 ~~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~--~~W~~~~~i~~~~-~~~~~~~~~~~~~i~~~~~-~------~~~~~ 322 (357)
...++..+.+|.+....... ..-++|+++- ..|.+..+.+... ....+..+..++.++++.. + ..+..
T Consensus 166 ~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ 245 (482)
T KOG0379|consen 166 GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHI 245 (482)
T ss_pred cceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEe
Confidence 34666777888888765422 4678898887 7899998887543 2344444444555555432 1 36899
Q ss_pred EECCCCcEEEe
Q 037345 323 YDPNTRALRDV 333 (357)
Q Consensus 323 yd~~t~~~~~v 333 (357)
+|+.+.+|.++
T Consensus 246 ldl~~~~W~~~ 256 (482)
T KOG0379|consen 246 LDLSTWEWKLL 256 (482)
T ss_pred eecccceeeec
Confidence 99999999866
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.85 E-value=0.12 Score=49.52 Aligned_cols=201 Identities=10% Similarity=0.034 Sum_probs=116.1
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecc
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLK 195 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~ 195 (357)
.++|+|-.++.|............. ........+ + +++.+...... ....-+++.|+..|++|+.+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r----~g~~~~~~~----~-~l~lfGG~~~~----~~~~~~l~~~d~~t~~W~~l~ 155 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPR----YGHSLSAVG----D-KLYLFGGTDKK----YRNLNELHSLDLSTRTWSLLS 155 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcc----cceeEEEEC----C-eEEEEccccCC----CCChhheEeccCCCCcEEEec
Confidence 4899999998888776544322111 001111111 1 12222211111 122344669999999999865
Q ss_pred cCCcccccccCCCCCcceEECceEEEEEccCC---CcCEEEEEECCCcceeEecCCCCC--CCCCCeEEEECCeEEEEEe
Q 037345 196 ANELSDYSFLGGQQSENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIKCPDNS--YFPNPILGVYDNSLHFLDF 270 (357)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~lP~~~--~~~~~~l~~~~g~L~l~~~ 270 (357)
.... .|..+.. ...+.++..+|...+... ....+.+||+++.+|..+...... .+.....+..+++++++..
T Consensus 156 ~~~~--~P~~r~~-Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG 232 (482)
T KOG0379|consen 156 PTGD--PPPPRAG-HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGG 232 (482)
T ss_pred CcCC--CCCCccc-ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEec
Confidence 3322 1111110 455666677777765542 235789999999999998765444 3444577788999888876
Q ss_pred cC--CCCeEEEEEEcC--CeeEEEEEEccC--CceeEEEEEeeCCcEEEEee--------CCeEEEEECCCCcEEEe
Q 037345 271 DR--SESCFEKWVMKE--GSWTKQLSVGPI--LGVLRALEFWKNGSFFIESN--------TNQLLLYDPNTRALRDV 333 (357)
Q Consensus 271 ~~--~~~~~~iW~l~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~i~~~~~--------~~~~~~yd~~t~~~~~v 333 (357)
.. ....=++|.|+= ..|.+....+.. ........ ..+..++++.. -..++.||.+++.|.++
T Consensus 233 ~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~-~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 233 GDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT-VSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred cccCCceecceEeeecccceeeeccccCCCCCCcceeeeE-EECCEEEEEcCCcccccccccccccccccccceeee
Confidence 43 223457899987 677754433311 12223333 33444555432 23588999999999988
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.55 E-value=0.16 Score=46.22 Aligned_cols=149 Identities=8% Similarity=0.158 Sum_probs=92.0
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcce-EECceEEEEEccCC--------CcCEEEEEECCCcceeEecCCCCC
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENT-YLDRICYWIAWRYN--------NCQEILSFHMRDEAFHVIKCPDNS 251 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v-~~~G~lyw~~~~~~--------~~~~i~~fD~~~e~~~~i~lP~~~ 251 (357)
+++|+-.++.|+.+..+.. +.+... ...| +-.|.+|.+.+... ..--+-.||+.+.+|..+.++...
T Consensus 100 Ly~Yn~k~~eWkk~~spn~-P~pRss---hq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P 175 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNA-PPPRSS---HQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP 175 (521)
T ss_pred eeEEeccccceeEeccCCC-cCCCcc---ceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence 4588999999999765433 333211 2344 44465555544331 234678999999999999988776
Q ss_pred -CCCCCeEEEECCeEEEEEecCCCCe-----EEEEEEcC--CeeEEEEEEc--cCCceeEEEEEeeCCcEEEEee-----
Q 037345 252 -YFPNPILGVYDNSLHFLDFDRSESC-----FEKWVMKE--GSWTKQLSVG--PILGVLRALEFWKNGSFFIESN----- 316 (357)
Q Consensus 252 -~~~~~~l~~~~g~L~l~~~~~~~~~-----~~iW~l~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~----- 316 (357)
.+...+++.++.+|.++....+..+ =+||+++- ..|.+...-+ |...-..-+.+...|.||+...
T Consensus 176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence 3334577888999998876542221 25666664 8999987532 2211122333444566666532
Q ss_pred ----------CCeEEEEECCC-----CcEEEe
Q 037345 317 ----------TNQLLLYDPNT-----RALRDV 333 (357)
Q Consensus 317 ----------~~~~~~yd~~t-----~~~~~v 333 (357)
-...+..++++ -+|.++
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kv 287 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKV 287 (521)
T ss_pred hhhhhhcCceeeeeeeecCCcCCCcceeEeec
Confidence 13577888888 556666
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.01 E-value=0.0038 Score=54.39 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHhcCC-----ccccchhhcchHhHHhhcCChHHHHHHh
Q 037345 4 NDDFSEDLLIEILSRLP-----VKSLMRYKFVCRFWCALIKSPRFVSRHI 48 (357)
Q Consensus 4 ~~~LP~Dll~~IL~rLP-----~~sl~r~r~VcK~W~~li~~p~F~~~~~ 48 (357)
++.||||++.+||.++= ..++.++.+|||.|+-...+|.|-+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 46899999999998764 5999999999999999999998766543
No 35
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.59 E-value=0.44 Score=41.32 Aligned_cols=119 Identities=11% Similarity=0.185 Sum_probs=79.5
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCccee-EecCCCCC-CC---------CCCeEEEECCeEEEEEecCC-CCeE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEAFH-VIKCPDNS-YF---------PNPILGVYDNSLHFLDFDRS-ESCF 277 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~-~~---------~~~~l~~~~g~L~l~~~~~~-~~~~ 277 (357)
...|+-||.+|+.... ...|+.||+.++... ...||... .+ ....+++-+..|.++-...+ ...+
T Consensus 72 tG~vVYngslYY~~~~---s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYN---SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred CCeEEECCcEEEEecC---CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 6678899999999864 369999999999998 77888765 21 11677777777887765443 3358
Q ss_pred EEEEEcC------CeeEEEEEEccCCceeEEEEEeeCCcEEEEeeC-----CeEEEEECCCCcEEEeeec
Q 037345 278 EKWVMKE------GSWTKQLSVGPILGVLRALEFWKNGSFFIESNT-----NQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 278 ~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~yd~~t~~~~~v~~~ 336 (357)
.|=.|+. .+|.-.. . ...... ++--+|.++.+... .-.++||+.+++-+.+.++
T Consensus 149 vvskld~~tL~v~~tw~T~~--~-k~~~~n--aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTSY--P-KRSAGN--AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred EEEeeCcccCceEEEEEecc--C-chhhcc--eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 8888876 4554321 1 111111 22235677776542 2468999999999888664
No 36
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=94.43 E-value=1.4 Score=37.60 Aligned_cols=117 Identities=14% Similarity=0.231 Sum_probs=69.7
Q ss_pred EECceEEEEEccCCCcCEEEEEECCCcceeEecCCCCC---CCC-CCeEEEE--CCe---EEEEEec--CCCCeEEEEEE
Q 037345 214 YLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNS---YFP-NPILGVY--DNS---LHFLDFD--RSESCFEKWVM 282 (357)
Q Consensus 214 ~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~---~~~-~~~l~~~--~g~---L~l~~~~--~~~~~~~iW~l 282 (357)
.+||.+ .+... ..++..|+.|+++..+|.|+.. ... ...++.. .+. +.+.... .....++|..+
T Consensus 3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 478888 44432 3799999999999998866542 111 0122211 122 2221110 12357888888
Q ss_pred cCCeeEEEEEEccCCceeEEEEEeeCCcEEEEee-C-----CeEEEEECCCCcEEE-eeec
Q 037345 283 KEGSWTKQLSVGPILGVLRALEFWKNGSFFIESN-T-----NQLLLYDPNTRALRD-VGLG 336 (357)
Q Consensus 283 ~~~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~-----~~~~~yd~~t~~~~~-v~~~ 336 (357)
+.++|.......+.....+. ++.-+|.++.+.. . ..+++||+++.++++ +.++
T Consensus 78 ~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 78 GSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred CCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 88899987632221111222 5555788877643 1 169999999999995 7655
No 37
>PF13964 Kelch_6: Kelch motif
Probab=93.80 E-value=0.17 Score=31.60 Aligned_cols=37 Identities=5% Similarity=0.093 Sum_probs=30.9
Q ss_pred CcceEECceEEEEEccCC---CcCEEEEEECCCcceeEec
Q 037345 210 SENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIK 246 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~ 246 (357)
...|.++|.||.+.+... ....+..||+++++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 567899999999987653 3568999999999999874
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=93.32 E-value=2.2 Score=36.94 Aligned_cols=119 Identities=13% Similarity=0.216 Sum_probs=77.7
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCcceeEe-cCCCCC-C---------CCCCeEEEECCeEEEEEecC-CCCeE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVI-KCPDNS-Y---------FPNPILGVYDNSLHFLDFDR-SESCF 277 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i-~lP~~~-~---------~~~~~l~~~~g~L~l~~~~~-~~~~~ 277 (357)
...|+-||.+|+..... ..|+-||+.+++.... .+|... . ...+.|++-+..|.++=... ....|
T Consensus 77 tG~VVYngslYY~~~~s---~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 77 TGVVVYNGSLYFNKFNS---HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred ccEEEECceEEEEecCC---ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 67899999999976543 5899999999999644 467532 1 11277888777788775432 44678
Q ss_pred EEEEEcC------CeeEEEEEEccCCceeEEEEEeeCCcEEEEee-----CCeEEEEECCCCcEEEeeec
Q 037345 278 EKWVMKE------GSWTKQLSVGPILGVLRALEFWKNGSFFIESN-----TNQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 278 ~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 336 (357)
.|=.|+. .+|.-.+.-. ... -++--+|.++.... ..-.++||..|++-+.+.++
T Consensus 154 vvSkLnp~tL~ve~tW~T~~~k~---sa~--naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~ 218 (255)
T smart00284 154 VISKLNPATLTIENTWITTYNKR---SAS--NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP 218 (255)
T ss_pred EEEeeCcccceEEEEEEcCCCcc---ccc--ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence 8888887 4555422111 111 12223466666642 23478999999998888664
No 39
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.79 E-value=7.8 Score=33.34 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=113.4
Q ss_pred ecccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceE
Q 037345 101 GNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTE 180 (357)
Q Consensus 101 ~s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 180 (357)
+..+|-|++.+-...+++.++|.+++...+..+. ..++.++...+.+-|.. . ....
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------------~~G~~~~~~~g~l~v~~----~--------~~~~ 63 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------------PNGMAFDRPDGRLYVAD----S--------GGIA 63 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------------EEEEEEECTTSEEEEEE----T--------TCEE
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------------CceEEEEccCCEEEEEE----c--------CceE
Confidence 4446777777766668899999999876544333 24555553333332221 1 1333
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC---Cc--CEEEEEECCCcceeEecCCCCCCCCC
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN---NC--QEILSFHMRDEAFHVIKCPDNSYFPN 255 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~--~~i~~fD~~~e~~~~i~lP~~~~~~~ 255 (357)
+++..++.++.+...+....+..... .-.+--+|.+|.-..... .. ..+..+|.. .+...+.-... ...
T Consensus 64 --~~d~~~g~~~~~~~~~~~~~~~~~~N-D~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~--~pN 137 (246)
T PF08450_consen 64 --VVDPDTGKVTVLADLPDGGVPFNRPN-DVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG--FPN 137 (246)
T ss_dssp --EEETTTTEEEEEEEEETTCSCTEEEE-EEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES--SEE
T ss_pred --EEecCCCcEEEEeeccCCCcccCCCc-eEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc--ccc
Confidence 77888998887654321010111000 234456888877654321 11 579999999 55443321111 111
Q ss_pred CeEEEECCe-EEEEEecCCCCeEEEEEEcC--CeeEEEEEE-ccCC--ceeEEEEEeeCCcEEEEee-CCeEEEEECCCC
Q 037345 256 PILGVYDNS-LHFLDFDRSESCFEKWVMKE--GSWTKQLSV-GPIL--GVLRALEFWKNGSFFIESN-TNQLLLYDPNTR 328 (357)
Q Consensus 256 ~~l~~~~g~-L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i-~~~~--~~~~~~~~~~~~~i~~~~~-~~~~~~yd~~t~ 328 (357)
......+|+ |+++.. ...++...-++. ..+.....+ +... ....-+++..+|.|++... .+++..||++.+
T Consensus 138 Gi~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EEEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred ceEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 122344666 555443 344444444433 335544433 2222 2344556666788888754 789999999977
Q ss_pred cEEEeeecCCcEEEEEe
Q 037345 329 ALRDVGLGTDGLFLHRY 345 (357)
Q Consensus 329 ~~~~v~~~~~~~~~~~y 345 (357)
.++++.++......+.|
T Consensus 216 ~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEE-SSSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEE
Confidence 78888877334444443
No 40
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.79 E-value=7.2 Score=36.95 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=78.7
Q ss_pred CeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCC--cee
Q 037345 115 NRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTD--SWR 192 (357)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~--~W~ 192 (357)
.++.|+|.+|+||. +|......+.. ...+||.+|. .+-.|+.-+.... .++-+ .|.+... .|+
T Consensus 57 DELHvYNTatnqWf-~PavrGDiPpg----cAA~GfvcdG--trilvFGGMvEYG------kYsNd--LYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDIPPG----CAAFGFVCDG--TRILVFGGMVEYG------KYSND--LYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceee-cchhcCCCCCc----hhhcceEecC--ceEEEEccEeeec------cccch--HHHhhhhhhhHh
Confidence 46799999999997 45444433333 2245555553 3333332221111 23445 7777765 456
Q ss_pred ecccCCc--ccccccCCCCCcceEECceEEEEEccCC-------------CcCEEEEEECCCcceeE-ec-----CCCCC
Q 037345 193 YLKANEL--SDYSFLGGQQSENTYLDRICYWIAWRYN-------------NCQEILSFHMRDEAFHV-IK-----CPDNS 251 (357)
Q Consensus 193 ~~~~~~~--~~~~~~~~~~~~~v~~~G~lyw~~~~~~-------------~~~~i~~fD~~~e~~~~-i~-----lP~~~ 251 (357)
++...++ .+.++.+- ..+-+..+.+.|.+.+-.+ +..+++-+-......-. |+ +|...
T Consensus 122 rlkp~~p~nG~pPCPRl-GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRL-GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hcCCCCCCCCCCCCCcc-CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 6543222 12233211 1344556678888764321 23455555544543321 22 34433
Q ss_pred CCCCCeEE-EECC---eEEEEEecCCCCeEEEEEEcC--CeeEEEE
Q 037345 252 YFPNPILG-VYDN---SLHFLDFDRSESCFEKWVMKE--GSWTKQL 291 (357)
Q Consensus 252 ~~~~~~l~-~~~g---~L~l~~~~~~~~~~~iW~l~~--~~W~~~~ 291 (357)
......+- +.+. ++.+...-....-=++|.|+- -.|.+..
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 22211221 2222 255555432334457999996 8898854
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.75 E-value=9.8 Score=34.41 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=77.0
Q ss_pred CCcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECce-EEEEEccC-----CCcCEEEEEECCCcceeEe-cC
Q 037345 175 DSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRI-CYWIAWRY-----NNCQEILSFHMRDEAFHVI-KC 247 (357)
Q Consensus 175 ~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~-----~~~~~i~~fD~~~e~~~~i-~l 247 (357)
..+.-|+-+|+..++.|+.....|- .+. + ..++...|. +-.+.++- .......-|.....+|... ++
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf--~~~-a---Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~l 265 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPF--YGN-A---GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDL 265 (381)
T ss_pred hcccccccccccccchhhhcCcCcc--cCc-c---CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCC
Confidence 3455566689999999999886542 221 1 234444444 33333221 1344667777778899876 46
Q ss_pred CCCC-CCCCCeEEEE----CCeEEEEEecC--------------------CCCeEEEEEEcCCeeEEEEEEccCCceeEE
Q 037345 248 PDNS-YFPNPILGVY----DNSLHFLDFDR--------------------SESCFEKWVMKEGSWTKQLSVGPILGVLRA 302 (357)
Q Consensus 248 P~~~-~~~~~~l~~~----~g~L~l~~~~~--------------------~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~ 302 (357)
|... ...+...+-. +|.+-+..... ...+-+||.+++.+|.....++. .+.--
T Consensus 266 p~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~--~l~YG 343 (381)
T COG3055 266 PAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ--GLAYG 343 (381)
T ss_pred CCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC--Cccce
Confidence 6555 2223222222 33343333211 23466899999999999888874 33334
Q ss_pred EEEeeCCcEEEEee
Q 037345 303 LEFWKNGSFFIESN 316 (357)
Q Consensus 303 ~~~~~~~~i~~~~~ 316 (357)
+.+..++.++++..
T Consensus 344 ~s~~~nn~vl~IGG 357 (381)
T COG3055 344 VSLSYNNKVLLIGG 357 (381)
T ss_pred EEEecCCcEEEEcc
Confidence 44556778888753
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.42 E-value=0.42 Score=29.19 Aligned_cols=37 Identities=5% Similarity=0.065 Sum_probs=30.4
Q ss_pred CcceEECceEEEEEccCC---CcCEEEEEECCCcceeEec
Q 037345 210 SENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIK 246 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~ 246 (357)
...+.++|.+|.+.+... ....+..||+.+.+|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 467899999999987653 3458999999999999763
No 43
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.06 E-value=8.3 Score=35.90 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=69.7
Q ss_pred CcceEECce-EEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeE--EEECCeEEEEEecCCCCeEEEEEEcCCe
Q 037345 210 SENTYLDRI-CYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPIL--GVYDNSLHFLDFDRSESCFEKWVMKEGS 286 (357)
Q Consensus 210 ~~~v~~~G~-lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l--~~~~g~L~l~~~~~~~~~~~iW~l~~~~ 286 (357)
....+-+|. .-...+. +.++.+||+.+.+...+..|.......... +..+|...++.. ....|.+--.+.++
T Consensus 262 ~a~f~p~G~~~i~~s~r---rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGR---RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--NNGHIHLLHAKTKE 336 (514)
T ss_pred eeeecCCCceEEEeccc---ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc--cCceEEeehhhhhh
Confidence 344555776 4433333 469999999999999888887763111111 222344222222 23444444444366
Q ss_pred eEEEEEEccCCceeEEEEEeeCCcEEE-EeeCCeEEEEECCCCcEEEe
Q 037345 287 WTKQLSVGPILGVLRALEFWKNGSFFI-ESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 287 W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~yd~~t~~~~~v 333 (357)
|.-...|. +...-+.+..+++.++ ...+++++.+|++.+.....
T Consensus 337 li~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 337 LITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred hhheeeec---cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 66655554 3456666666766544 45588999999999987666
No 44
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.43 E-value=15 Score=34.34 Aligned_cols=120 Identities=9% Similarity=0.078 Sum_probs=65.9
Q ss_pred EECceEEEEEccCCCcCEEEEEECCCcc---eeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcCCeeEEE
Q 037345 214 YLDRICYWIAWRYNNCQEILSFHMRDEA---FHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQ 290 (357)
Q Consensus 214 ~~~G~lyw~~~~~~~~~~i~~fD~~~e~---~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~ 290 (357)
..++.+|.++..+.....|++.|+++-. |..+-.|......-..+...++.|.+.........+.|+-+. ..|...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~ 363 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESR 363 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEe
Confidence 4588899888765567899999999875 553333322211112234557778777765444455555444 245554
Q ss_pred EEEccCCceeEEEEEe-eCCcEEEEee----CCeEEEEECCCCcEEEee
Q 037345 291 LSVGPILGVLRALEFW-KNGSFFIESN----TNQLLLYDPNTRALRDVG 334 (357)
Q Consensus 291 ~~i~~~~~~~~~~~~~-~~~~i~~~~~----~~~~~~yd~~t~~~~~v~ 334 (357)
....+..+........ ..+.+++... ...++.||+++++.+.+.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 4333332222222211 2355655533 468999999999998763
No 45
>PF13964 Kelch_6: Kelch motif
Probab=90.22 E-value=0.38 Score=29.98 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.8
Q ss_pred CeEEEEeccccchhcCCCCCC
Q 037345 115 NRISIWNLATREFRALPKWKG 135 (357)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~ 135 (357)
..+.++||.|++|..+|+++.
T Consensus 28 ~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 28 NDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccEEEEcCCCCcEEECCCCCC
Confidence 578999999999999998875
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=90.03 E-value=0.94 Score=28.06 Aligned_cols=38 Identities=13% Similarity=0.176 Sum_probs=30.6
Q ss_pred CcceEECceEEEEEcc--CC---CcCEEEEEECCCcceeEecC
Q 037345 210 SENTYLDRICYWIAWR--YN---NCQEILSFHMRDEAFHVIKC 247 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~--~~---~~~~i~~fD~~~e~~~~i~l 247 (357)
..++.++|+||...+. .. ....+..||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 5678899999999877 21 35678899999999998754
No 47
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.02 E-value=6.8 Score=34.18 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=80.9
Q ss_pred CceEEecccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCC
Q 037345 96 DHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKD 175 (357)
Q Consensus 96 ~~~~~~s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~ 175 (357)
...+++.-||-|-+..-....+.-.||.++.--++|.+...... .-.+..|+.. -+++.....
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g-------sRriwsdpig----~~wittwg~------ 253 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG-------SRRIWSDPIG----RAWITTWGT------ 253 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc-------ccccccCccC----cEEEeccCC------
Confidence 34466667777766653334567889999987788877653211 1123444432 133332222
Q ss_pred CcceEEEEEEcCCCceeecccCCcccccccCCCCCcceEECc-eEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCC
Q 037345 176 SVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDR-ICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFP 254 (357)
Q Consensus 176 ~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~ 254 (357)
.... .|+..+.+|.+..-+-.... -...++|. -.-|+.+-+ ...|..||.++++|.++++|.....
T Consensus 254 -g~l~--rfdPs~~sW~eypLPgs~ar-------pys~rVD~~grVW~sea~--agai~rfdpeta~ftv~p~pr~n~g- 320 (353)
T COG4257 254 -GSLH--RFDPSVTSWIEYPLPGSKAR-------PYSMRVDRHGRVWLSEAD--AGAIGRFDPETARFTVLPIPRPNSG- 320 (353)
T ss_pred -ceee--EeCcccccceeeeCCCCCCC-------cceeeeccCCcEEeeccc--cCceeecCcccceEEEecCCCCCCC-
Confidence 2444 89999999987432111011 12233322 234554433 5799999999999999999877632
Q ss_pred CCeEEEECCeEEEE
Q 037345 255 NPILGVYDNSLHFL 268 (357)
Q Consensus 255 ~~~l~~~~g~L~l~ 268 (357)
..++.-..|++...
T Consensus 321 n~ql~gr~ge~W~~ 334 (353)
T COG4257 321 NIQLDGRPGELWFT 334 (353)
T ss_pred ceeccCCCCceeec
Confidence 22333334445543
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.55 E-value=14 Score=31.92 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=81.4
Q ss_pred EEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCC----cceeEecCCCCC--CCC-C
Q 037345 183 LHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRD----EAFHVIKCPDNS--YFP-N 255 (357)
Q Consensus 183 vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~----e~~~~i~lP~~~--~~~-~ 255 (357)
+|+..|++++.+..... .++. ...+.-||.+.-..+...+...+-.|+..+ ..|.+ .|..+ .++ .
T Consensus 50 ~yD~~tn~~rpl~v~td----~FCS--gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e--~~~~m~~~RWYp 121 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTD----TFCS--GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTE--SPNDMQSGRWYP 121 (243)
T ss_pred EEecCCCcEEeccCCCC----Cccc--CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceE--CcccccCCCccc
Confidence 89999999988764321 1221 445566777775555433455677788765 45553 33323 222 2
Q ss_pred CeEEEECCeEEEEEecCCCCeEEEEEEcC---C--eeEEEEEEc--cCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCC
Q 037345 256 PILGVYDNSLHFLDFDRSESCFEKWVMKE---G--SWTKQLSVG--PILGVLRALEFWKNGSFFIESNTNQLLLYDPNTR 328 (357)
Q Consensus 256 ~~l~~~~g~L~l~~~~~~~~~~~iW~l~~---~--~W~~~~~i~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~ 328 (357)
.....-+|++.++... .....|.|=-+. . .|....... .....+-.+.+..+|+||+..+ .+-..||.+++
T Consensus 122 T~~~L~DG~vlIvGG~-~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~s~i~d~~~n 199 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGS-NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RGSIIYDYKTN 199 (243)
T ss_pred cceECCCCCEEEEeCc-CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CCcEEEeCCCC
Confidence 2333448888888775 345556554322 1 111111110 1122344555667899988764 45677799999
Q ss_pred cE-EEe-eec
Q 037345 329 AL-RDV-GLG 336 (357)
Q Consensus 329 ~~-~~v-~~~ 336 (357)
++ +++ .++
T Consensus 200 ~v~~~lP~lP 209 (243)
T PF07250_consen 200 TVVRTLPDLP 209 (243)
T ss_pred eEEeeCCCCC
Confidence 87 565 555
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.75 E-value=29 Score=33.93 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCChHHHHH
Q 037345 3 SNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSR 46 (357)
Q Consensus 3 ~~~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~ 46 (357)
.+..||.++...||..|+.+++.++++||+.|+.++.+......
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 35689999999999999999999999999999999987665543
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.20 E-value=17 Score=30.71 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=74.1
Q ss_pred EEEEcCCC--ceeecccCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCccee-EecCCCCCCCCCCeE
Q 037345 182 ILHTLSTD--SWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFH-VIKCPDNSYFPNPIL 258 (357)
Q Consensus 182 ~vyss~t~--~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~l 258 (357)
..++..++ .|+.--.... .-.. ..++.-+|.+|.....+ .+.++|..+.+.. .+.++..... ..
T Consensus 6 ~~~d~~tG~~~W~~~~~~~~-~~~~-----~~~~~~~~~v~~~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~---~~ 72 (238)
T PF13360_consen 6 SALDPRTGKELWSYDLGPGI-GGPV-----ATAVPDGGRVYVASGDG----NLYALDAKTGKVLWRFDLPGPISG---AP 72 (238)
T ss_dssp EEEETTTTEEEEEEECSSSC-SSEE-----ETEEEETTEEEEEETTS----EEEEEETTTSEEEEEEECSSCGGS---GE
T ss_pred EEEECCCCCEEEEEECCCCC-CCcc-----ceEEEeCCEEEEEcCCC----EEEEEECCCCCEEEEeeccccccc---ee
Confidence 37787666 5876221100 0000 22455788888876554 9999998665442 3445544321 24
Q ss_pred EEECCeEEEEEecCCCCeEEEEEEc--C--CeeEEEEEE-ccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 259 GVYDNSLHFLDFDRSESCFEKWVMK--E--GSWTKQLSV-GPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 259 ~~~~g~L~l~~~~~~~~~~~iW~l~--~--~~W~~~~~i-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
...+|.+++... .. .|+.++ + ..|...... +.............++.+++...++.++.+|++|++...-
T Consensus 73 ~~~~~~v~v~~~---~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 73 VVDGGRVYVGTS---DG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEETTEEEEEET---TS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred eecccccccccc---ee--eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 677888877664 23 555555 3 678743322 2222111121222244555555589999999999988433
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.11 E-value=27 Score=32.84 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=97.2
Q ss_pred EeccccchhcCCCCCCCCCCccccccceeEEeeeCCCC-CeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeecccCC
Q 037345 120 WNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSN-DYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANE 198 (357)
Q Consensus 120 ~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~-~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 198 (357)
-+|-++.|...--++...... ....+.+.|... +|-|.+ ++.+++|++.+.+=+..-.
T Consensus 7 ~t~e~~~w~~~~~~~~~ke~~-----~vssl~fsp~~P~d~aVt~--------------S~rvqly~~~~~~~~k~~s-- 65 (487)
T KOG0310|consen 7 ETPEIRYWRQETFPPVHKEHN-----SVSSLCFSPKHPYDFAVTS--------------SVRVQLYSSVTRSVRKTFS-- 65 (487)
T ss_pred CCccchhhhhhcccccccccC-----cceeEecCCCCCCceEEec--------------ccEEEEEecchhhhhhhHH--
Confidence 356666676654333322211 145566655432 333322 3335599998865443111
Q ss_pred cccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCcce-eEe---cCCCCCCCCCCeEEEECCeEEEEEecCCC
Q 037345 199 LSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAF-HVI---KCPDNSYFPNPILGVYDNSLHFLDFDRSE 274 (357)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~-~~i---~lP~~~~~~~~~l~~~~g~L~l~~~~~~~ 274 (357)
.+.- .--+-.+.-||.|.-.+.. ...+=.||..+... +.+ ..|... ......++.+.+.+. ++
T Consensus 66 --rFk~--~v~s~~fR~DG~LlaaGD~---sG~V~vfD~k~r~iLR~~~ah~apv~~----~~f~~~d~t~l~s~s--Dd 132 (487)
T KOG0310|consen 66 --RFKD--VVYSVDFRSDGRLLAAGDE---SGHVKVFDMKSRVILRQLYAHQAPVHV----TKFSPQDNTMLVSGS--DD 132 (487)
T ss_pred --hhcc--ceeEEEeecCCeEEEccCC---cCcEEEeccccHHHHHHHhhccCceeE----EEecccCCeEEEecC--CC
Confidence 1111 0002334457888866543 36888899555222 111 222221 122233455444443 57
Q ss_pred CeEEEEEEcCCeeEEEEEEccCCceeEEEEEe-eCCcEEEEee-CCeEEEEECCCCcEEEeeecCCcE-EEEEeeec
Q 037345 275 SCFEKWVMKEGSWTKQLSVGPILGVLRALEFW-KNGSFFIESN-TNQLLLYDPNTRALRDVGLGTDGL-FLHRYKES 348 (357)
Q Consensus 275 ~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~~yd~~t~~~~~v~~~~~~~-~~~~y~~s 348 (357)
....+|.+.... + +..+....-..+-..+. .++.+++... |+.+=.||.++..-+.+.+..+.. ...+|.||
T Consensus 133 ~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 133 KVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred ceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence 889999999833 3 44444322223444444 3455666544 778889999988744445553332 34444444
No 52
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=86.97 E-value=5.9 Score=30.45 Aligned_cols=65 Identities=20% Similarity=0.366 Sum_probs=48.2
Q ss_pred EEEEEECCCc--ceeEecCCCCC----CC--------CCCeEEEECCeEEEEEecC--------CCCeEEEEEEcC----
Q 037345 231 EILSFHMRDE--AFHVIKCPDNS----YF--------PNPILGVYDNSLHFLDFDR--------SESCFEKWVMKE---- 284 (357)
Q Consensus 231 ~i~~fD~~~e--~~~~i~lP~~~----~~--------~~~~l~~~~g~L~l~~~~~--------~~~~~~iW~l~~---- 284 (357)
.|+..|+..+ .++.|+||... .. ....+++.+|+|-++.... .+..+.+|.|+.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5778888865 77889998776 11 1145667889988887643 356799999997
Q ss_pred -CeeEEEEEEcc
Q 037345 285 -GSWTKQLSVGP 295 (357)
Q Consensus 285 -~~W~~~~~i~~ 295 (357)
.+|.+.+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 78999998863
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.97 E-value=18 Score=30.63 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=90.2
Q ss_pred ccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEE
Q 037345 103 CNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVI 182 (357)
Q Consensus 103 ~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 182 (357)
.+|.+++...+ ..++.+|+.|++...--..+.... . . ....+ =+|+... .. .. +.
T Consensus 35 ~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~~~~~~-~------~-~~~~~-----~~v~v~~--~~-------~~--l~ 89 (238)
T PF13360_consen 35 DGGRVYVASGD-GNLYALDAKTGKVLWRFDLPGPIS-G------A-PVVDG-----GRVYVGT--SD-------GS--LY 89 (238)
T ss_dssp ETTEEEEEETT-SEEEEEETTTSEEEEEEECSSCGG-S------G-EEEET-----TEEEEEE--TT-------SE--EE
T ss_pred eCCEEEEEcCC-CEEEEEECCCCCEEEEeecccccc-c------e-eeecc-----ccccccc--ce-------ee--eE
Confidence 56777766544 478999999998543222221110 0 0 01111 1111111 11 13 33
Q ss_pred EEEcCCC--cee-ecccCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCcce--eE-ecCCCCCCC---
Q 037345 183 LHTLSTD--SWR-YLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAF--HV-IKCPDNSYF--- 253 (357)
Q Consensus 183 vyss~t~--~W~-~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~--~~-i~lP~~~~~--- 253 (357)
.++..++ .|+ .....+. ...... ......++.+|.....+ .|.++|+.+.+- .. +..|.....
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPP--AGVRSS--SSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCT--CSTB----SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ecccCCcceeeeeccccccc--cccccc--cCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 6776665 687 3433222 111110 23333466777666544 899999887654 32 233322110
Q ss_pred ---CCCeEEEECCeEEEEEecCCCCeEEEEEEcCC--eeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCC
Q 037345 254 ---PNPILGVYDNSLHFLDFDRSESCFEKWVMKEG--SWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTR 328 (357)
Q Consensus 254 ---~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~--~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~ 328 (357)
....++..+|.+++.... ...+.+ -++.+ .|.+. +.. . .......++.+++...++.++.+|++|+
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~--g~~~~~-d~~tg~~~w~~~--~~~---~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGD--GRVVAV-DLATGEKLWSKP--ISG---I-YSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCT--SSEEEE-ETTTTEEEEEEC--SS----E-CECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecccccceEEECCEEEEEcCC--CeEEEE-ECCCCCEEEEec--CCC---c-cCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 113344446766655542 333444 44443 36222 221 1 1112233455565556899999999999
Q ss_pred cEEE
Q 037345 329 ALRD 332 (357)
Q Consensus 329 ~~~~ 332 (357)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 8754
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.76 E-value=0.34 Score=44.44 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCC
Q 037345 5 DDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKS 40 (357)
Q Consensus 5 ~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~ 40 (357)
-.||.+++..||+-|..+++.|++.+||.|+.+..+
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 479999999999999999999999999999988765
No 55
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.64 E-value=21 Score=31.25 Aligned_cols=226 Identities=10% Similarity=0.049 Sum_probs=119.6
Q ss_pred CceEEecccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCcc-------cc-c-cceeEEeeeCCCCCeEEEEEEE
Q 037345 96 DHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHK-------WV-Y-QLNFGFELDSSSNDYKIIFILN 166 (357)
Q Consensus 96 ~~~~~~s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~-------~~-~-~~~~~lg~d~~~~~ykvv~~~~ 166 (357)
.+.+--+-+|-|-+.......+-=.||.|++....|-.....+... .+ . ......-+|+.+..++=+-+-.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc
Confidence 3444555678777766443345668999999999887765443210 00 0 0011122344444333333321
Q ss_pred ecCCCCCCCCcceEEEEEEcCCCceeecccCC-----cc--c---ccccCCCC--CcceEECceEEEEEccCCCcCEEEE
Q 037345 167 LTDDNTRKDSVSTEVILHTLSTDSWRYLKANE-----LS--D---YSFLGGQQ--SENTYLDRICYWIAWRYNNCQEILS 234 (357)
Q Consensus 167 ~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~-----~~--~---~~~~~~~~--~~~v~~~G~lyw~~~~~~~~~~i~~ 234 (357)
... ....... ||+...+-|-.-.... +. . ++...+.. .-++.-||.+|+-...+ ..|..
T Consensus 144 ~~a----~~nlet~--vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag---naiar 214 (353)
T COG4257 144 EHA----DANLETA--VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG---NAIAR 214 (353)
T ss_pred ccC----CCcccce--eeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc---cceEE
Confidence 111 1234555 9999999995521110 00 0 11111111 23455689999875443 58999
Q ss_pred EECCCcceeEecCCCCCCCCCCeE-EEECCeEEEEEecCCCCeEEEEEEcC--CeeEEEEEEccCCceeEEEEEeeCCcE
Q 037345 235 FHMRDEAFHVIKCPDNSYFPNPIL-GVYDNSLHFLDFDRSESCFEKWVMKE--GSWTKQLSVGPILGVLRALEFWKNGSF 311 (357)
Q Consensus 235 fD~~~e~~~~i~lP~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i 311 (357)
.|..+..-.+++.|.........+ ..--|++...... .-.+-..+- .+|.. +.++..+....-+.+...|.+
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg----~g~l~rfdPs~~sW~e-ypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWG----TGSLHRFDPSVTSWIE-YPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccC----CceeeEeCccccccee-eeCCCCCCCcceeeeccCCcE
Confidence 999999888899988742111122 2234555554331 112223332 45544 333322222223444445666
Q ss_pred EEEe-eCCeEEEEECCCCcEEEeee
Q 037345 312 FIES-NTNQLLLYDPNTRALRDVGL 335 (357)
Q Consensus 312 ~~~~-~~~~~~~yd~~t~~~~~v~~ 335 (357)
.+-. ..+-+.-||++|.+++.+-+
T Consensus 290 W~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 290 WLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred EeeccccCceeecCcccceEEEecC
Confidence 6643 35679999999999999833
No 56
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=85.80 E-value=17 Score=31.22 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=72.3
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCcce-eEecCCCCC--CC--------CCCeEEEECCeEEEEEecC-CCCeE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEAF-HVIKCPDNS--YF--------PNPILGVYDNSLHFLDFDR-SESCF 277 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~-~~i~lP~~~--~~--------~~~~l~~~~g~L~l~~~~~-~~~~~ 277 (357)
...|+.+|++|+..... ..|+-||++++.- ....+|... .. ..+.+++.+.-|.++-... ....+
T Consensus 71 Tg~VVynGs~yynk~~t---~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~i 147 (249)
T KOG3545|consen 71 TGHVVYNGSLYYNKAGT---RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTI 147 (249)
T ss_pred cceEEEcceEEeeccCC---cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcE
Confidence 67899999999987553 6899999999644 334566554 11 1266777666666655432 44566
Q ss_pred EEEEEcC------CeeEEEEEEccCCceeEEEEEeeCCcEEEEee----CCeE-EEEECCCCcEEEeeec
Q 037345 278 EKWVMKE------GSWTKQLSVGPILGVLRALEFWKNGSFFIESN----TNQL-LLYDPNTRALRDVGLG 336 (357)
Q Consensus 278 ~iW~l~~------~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~----~~~~-~~yd~~t~~~~~v~~~ 336 (357)
.|=.|+. ..|.-...-.. . --++.-+|-++.+.+ ...+ ++||..+++-+.++|+
T Consensus 148 v~skLdp~tl~~e~tW~T~~~k~~---~--~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTTLPKRS---A--GNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLP 212 (249)
T ss_pred EeeccCHHHhheeeeeccccCCCC---c--CceEEEeeeeEEEeccccCCceEEEEEEcCCCceeccccc
Confidence 6666665 44532211111 1 112223466666644 2333 7999999999888765
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.06 E-value=24 Score=32.84 Aligned_cols=108 Identities=6% Similarity=0.091 Sum_probs=62.9
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCc--ceeEecCCCCC---C-----CCCCeEEEECCeEEEEEecCCCCeEEE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDE--AFHVIKCPDNS---Y-----FPNPILGVYDNSLHFLDFDRSESCFEK 279 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e--~~~~i~lP~~~---~-----~~~~~l~~~~g~L~l~~~~~~~~~~~i 279 (357)
..++..+|.+|.....+ .+.+||.++. .|+ .+++... . .....++..+|++++... ... +
T Consensus 63 ~sPvv~~~~vy~~~~~g----~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~---~g~--l 132 (394)
T PRK11138 63 LHPAVAYNKVYAADRAG----LVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE---KGQ--V 132 (394)
T ss_pred eccEEECCEEEEECCCC----eEEEEECCCCcEeeE-EcCCCcccccccccccccccccEEECCEEEEEcC---CCE--E
Confidence 46788999999887655 8999998754 454 2333211 0 011234566777776443 222 3
Q ss_pred EEEc--C--CeeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEE
Q 037345 280 WVMK--E--GSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRD 332 (357)
Q Consensus 280 W~l~--~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~ 332 (357)
..++ . ..|.... +. .....|+. .++.+++...++.++.+|.+|++...
T Consensus 133 ~ald~~tG~~~W~~~~--~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 133 YALNAEDGEVAWQTKV--AG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEECCCCCCcccccC--CC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 4444 2 5676542 11 11122322 34666666667889999999988753
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=82.02 E-value=42 Score=30.91 Aligned_cols=109 Identities=10% Similarity=0.058 Sum_probs=55.0
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCc--ceeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--C
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDE--AFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--G 285 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e--~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~ 285 (357)
..++..+|.+|.-...+ .+.++|.++. .|+ .+++.... ......++.+.+... ...+..+-.++ .
T Consensus 99 ~~p~v~~~~v~v~~~~g----~l~ald~~tG~~~W~-~~~~~~~~---~~p~v~~~~v~v~~~---~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 99 GGVGADGGLVFVGTEKG----EVIALDAEDGKELWR-AKLSSEVL---SPPLVANGLVVVRTN---DGRLTALDAATGER 167 (377)
T ss_pred cceEEcCCEEEEEcCCC----EEEEEECCCCcEeee-eccCceee---cCCEEECCEEEEECC---CCeEEEEEcCCCce
Confidence 34556678888665544 8999998654 454 33333221 112234555444322 23344443333 4
Q ss_pred eeEEEEEEccC--CceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEE
Q 037345 286 SWTKQLSVGPI--LGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALR 331 (357)
Q Consensus 286 ~W~~~~~i~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~ 331 (357)
.|.....-... .....|.. .++.+++...++.++.+|+++++..
T Consensus 168 ~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 168 LWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred eeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 45543221110 00112322 2355555555788999999988754
No 59
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.16 E-value=43 Score=30.44 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=69.0
Q ss_pred CcceEEC--ceEEEEEccCCCcCEEEEEECCCcceeEec---CCCCC---CCCC---CeEEEE---CCeEEEEEecC---
Q 037345 210 SENTYLD--RICYWIAWRYNNCQEILSFHMRDEAFHVIK---CPDNS---YFPN---PILGVY---DNSLHFLDFDR--- 272 (357)
Q Consensus 210 ~~~v~~~--G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~---lP~~~---~~~~---~~l~~~---~g~L~l~~~~~--- 272 (357)
..+++.+ |.+||....+ .|...|+..+.-...+ +-... ..+. .++..+ .|+|+++....
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp S--EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred cccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 4455543 6789988776 9999999988754432 21111 2221 344433 47788876432
Q ss_pred --CCCeEEEEEEcCCeeEEEEEEccCCceeEEEEEeeCCc-EEE-Eee-CCeEEEEECCCCcEEEe
Q 037345 273 --SESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGS-FFI-ESN-TNQLLLYDPNTRALRDV 333 (357)
Q Consensus 273 --~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~-~~~-~~~~~~yd~~t~~~~~v 333 (357)
+...=+||+++-.+=.++.+|+.. .-..-+++.++++ +++ +.. ++.+..||..|++..+.
T Consensus 263 sHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp -TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 556789999998333555666532 1123466676655 443 333 57899999999987544
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.08 E-value=16 Score=33.05 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=69.2
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECc-eEEEEEccC---------------------------------
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDR-ICYWIAWRY--------------------------------- 226 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~~--------------------------------- 226 (357)
++.|++.+++|..++...+..+. + ..++..+| .+|+..+..
T Consensus 115 ~Y~y~p~~nsW~kl~t~sP~gl~---G--~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 115 AYRYDPSTNSWHKLDTRSPTGLV---G--ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred eEEecCCCChhheeccccccccc---c--ceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 34899999999998876542221 1 45555555 888875432
Q ss_pred ---CCcCEEEEEECCCcceeEec-CCCCC-CCCCCeEEEECCeEEEEEecC--CCCeEEEEEEcC----CeeEEEEEEcc
Q 037345 227 ---NNCQEILSFHMRDEAFHVIK-CPDNS-YFPNPILGVYDNSLHFLDFDR--SESCFEKWVMKE----GSWTKQLSVGP 295 (357)
Q Consensus 227 ---~~~~~i~~fD~~~e~~~~i~-lP~~~-~~~~~~l~~~~g~L~l~~~~~--~~~~~~iW~l~~----~~W~~~~~i~~ 295 (357)
.....+++||+.+++|+..- .|... .+ ...+..+++|.++...- .-++-++++.+- ..|.+....+.
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 03568999999999999875 66654 22 23444566688877542 223444554442 78998866553
No 61
>smart00612 Kelch Kelch domain.
Probab=79.75 E-value=2.3 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=14.5
Q ss_pred cceEEEEEEcCCCceeeccc
Q 037345 177 VSTEVILHTLSTDSWRYLKA 196 (357)
Q Consensus 177 ~~~~~~vyss~t~~W~~~~~ 196 (357)
..++ +|+.++++|+.++.
T Consensus 15 ~~v~--~yd~~~~~W~~~~~ 32 (47)
T smart00612 15 KSVE--VYDPETNKWTPLPS 32 (47)
T ss_pred eeEE--EECCCCCeEccCCC
Confidence 3555 99999999988764
No 62
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.62 E-value=53 Score=30.56 Aligned_cols=106 Identities=8% Similarity=0.129 Sum_probs=61.2
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCcc--eeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--C
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEA--FHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--G 285 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~ 285 (357)
..++..+|.+|.....+ .+.++|..+.+ |+. +.... ..++..+|+|++...+ ..+...-.++ .
T Consensus 250 ~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~-----~~~~~~~~~vy~~~~~---g~l~ald~~tG~~ 316 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKR-EYGSV-----NDFAVDGGRIYLVDQN---DRVYALDTRGGVE 316 (394)
T ss_pred CCcEEECCEEEEEEcCC----eEEEEECCCCCEEEee-cCCCc-----cCcEEECCEEEEEcCC---CeEEEEECCCCcE
Confidence 56788899999877654 89999998754 543 22111 1234556666665532 2222222222 3
Q ss_pred eeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEE
Q 037345 286 SWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRD 332 (357)
Q Consensus 286 ~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~ 332 (357)
.|.... ... .....|.. .+|.+|+...++.++.+|.+|++...
T Consensus 317 ~W~~~~-~~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 317 LWSQSD-LLH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEcccc-cCC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 454321 110 11223332 35778887778899999999998754
No 63
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=79.49 E-value=5.5 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=17.1
Q ss_pred eCCcEEEEee-------CCeEEEEECCCCcEEEe
Q 037345 307 KNGSFFIESN-------TNQLLLYDPNTRALRDV 333 (357)
Q Consensus 307 ~~~~i~~~~~-------~~~~~~yd~~t~~~~~v 333 (357)
.++.+|+... -..+..||+++++|+++
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 4566766632 23689999999999998
No 64
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=78.29 E-value=56 Score=30.10 Aligned_cols=109 Identities=9% Similarity=0.076 Sum_probs=64.2
Q ss_pred ceEECceEEEEEccCCCcCEEEEEECCCcc--eeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC----C
Q 037345 212 NTYLDRICYWIAWRYNNCQEILSFHMRDEA--FHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE----G 285 (357)
Q Consensus 212 ~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~--~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~----~ 285 (357)
+++.+|.+|.....+ .|.++|.++.+ |+.-... ........+...+|+|++-... . .++.++. .
T Consensus 64 ~~~~dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~--g---~~y~ld~~~G~~ 133 (370)
T COG1520 64 PADGDGTVYVGTRDG----NIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGKIYVGSWD--G---KLYALDASTGTL 133 (370)
T ss_pred cEeeCCeEEEecCCC----cEEEEeCCCCcEEecccCcC-cceeccCceEEeCCeEEEeccc--c---eEEEEECCCCcE
Confidence 599999999986554 89999999877 6543333 1111112234447886665543 2 6677766 4
Q ss_pred eeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 286 SWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 286 ~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
.|.....- . ..+..+ .+..++.+++...++.++..|.+|++.+..
T Consensus 134 ~W~~~~~~-~-~~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 134 VWSRNVGG-S-PYYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEEEecCC-C-eEEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 55554322 1 011111 122345556655678899999998877554
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.05 E-value=57 Score=30.03 Aligned_cols=107 Identities=9% Similarity=0.027 Sum_probs=57.4
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCccee-EecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--Ce
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEAFH-VIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GS 286 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~ 286 (357)
..++..+|.+|.....+ .+.+||..+.+-. ..+++.... ...+..++.+++... ...+..+-.+. ..
T Consensus 59 ~~p~v~~~~v~v~~~~g----~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG----TVVALDAETGKRLWRVDLDERLS---GGVGADGGLVFVGTE---KGEVIALDAEDGKEL 128 (377)
T ss_pred cceEEECCEEEEECCCC----eEEEEEccCCcEeeeecCCCCcc---cceEEcCCEEEEEcC---CCEEEEEECCCCcEe
Confidence 45678899999877654 8999998765432 234544331 123344555554332 22222222222 44
Q ss_pred eEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEE
Q 037345 287 WTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALR 331 (357)
Q Consensus 287 W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~ 331 (357)
|... ++. .....|.. .++.+++...++.++.+|+++++..
T Consensus 129 W~~~--~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 129 WRAK--LSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred eeec--cCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCcee
Confidence 6432 111 01112221 3456666666788999999887753
No 66
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.37 E-value=6.9 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.0
Q ss_pred eCCcEEEEeeCCeEEEEECCCCcEEE
Q 037345 307 KNGSFFIESNTNQLLLYDPNTRALRD 332 (357)
Q Consensus 307 ~~~~i~~~~~~~~~~~yd~~t~~~~~ 332 (357)
.+|.+|+...++.++++|.++++...
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 34566776668999999999988753
No 67
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=75.95 E-value=18 Score=33.59 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=40.5
Q ss_pred ceEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEEECCeEEEEEecC-CC---CeEEEEEEc
Q 037345 217 RICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDR-SE---SCFEKWVMK 283 (357)
Q Consensus 217 G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~-~~---~~~~iW~l~ 283 (357)
..+|.......++..++.||+-+.+. ..|-.++++ -..-+|+|+++.... +. .-++||.--
T Consensus 320 DvLYvF~~~~~g~~~Ll~YN~I~k~v---~tPi~chG~---alf~DG~l~~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 320 DVLYVFYAREEGRYLLLPYNLIRKEV---ATPIICHGY---ALFEDGRLVYFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred eEEEEEEECCCCcEEEEechhhhhhh---cCCeeccce---eEecCCEEEEEecCCCCcceeccceeecCC
Confidence 47888877666788999999988654 345454443 334589999888652 22 346777654
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.57 E-value=68 Score=29.23 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred CceEEEEEccCCCcCEEEEEECCCcc-----eeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--CeeE
Q 037345 216 DRICYWIAWRYNNCQEILSFHMRDEA-----FHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GSWT 288 (357)
Q Consensus 216 ~G~lyw~~~~~~~~~~i~~fD~~~e~-----~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~ 288 (357)
+|..-|....+ ...|..|+++.+. -..+.+|.. .+.+.....-+|+..++... ....+.+..++. ..+.
T Consensus 154 dg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 154 DGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp TSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEE
T ss_pred CCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCcee
Q ss_pred EEEEEccCCc------eeEEEEEeeCCcEEEEee--CCeEEEEEC--CCCcEEEee
Q 037345 289 KQLSVGPILG------VLRALEFWKNGSFFIESN--TNQLLLYDP--NTRALRDVG 334 (357)
Q Consensus 289 ~~~~i~~~~~------~~~~~~~~~~~~i~~~~~--~~~~~~yd~--~t~~~~~v~ 334 (357)
...++..... ...-+.+..+|+.++..+ .+.+..|++ ++++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
No 69
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=74.49 E-value=51 Score=33.81 Aligned_cols=31 Identities=6% Similarity=0.150 Sum_probs=25.2
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCC--cceeE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRD--EAFHV 244 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~--e~~~~ 244 (357)
..++.++|.+|.....+ .++++|..+ +.|+.
T Consensus 188 ~TPlvvgg~lYv~t~~~----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPHN----KVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCCC----eEEEEECCCCcEEEEE
Confidence 67899999999987655 899999885 45654
No 70
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.12 E-value=68 Score=31.35 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=62.2
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCC--cceeEe-cCCCCCCC------CCCeEEEECCeEEEEEecCCCCeEEEE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRD--EAFHVI-KCPDNSYF------PNPILGVYDNSLHFLDFDRSESCFEKW 280 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~--e~~~~i-~lP~~~~~------~~~~l~~~~g~L~l~~~~~~~~~~~iW 280 (357)
..+++.+|.+|...... .|.++|..+ +.|+.- ..|..... ....++..+|++++...+ . .+.
T Consensus 63 stPvv~~g~vyv~s~~g----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g---~l~ 133 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A---RLV 133 (527)
T ss_pred cCCEEECCEEEEECCCC----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--C---EEE
Confidence 67889999999876654 799999886 455542 33322210 112245567777664432 1 244
Q ss_pred EEcC----CeeEEEEEEccC--Cce-eEEEEEeeCCcEEEEee------CCeEEEEECCCCcEEEe
Q 037345 281 VMKE----GSWTKQLSVGPI--LGV-LRALEFWKNGSFFIESN------TNQLLLYDPNTRALRDV 333 (357)
Q Consensus 281 ~l~~----~~W~~~~~i~~~--~~~-~~~~~~~~~~~i~~~~~------~~~~~~yd~~t~~~~~v 333 (357)
.++. ..|..... +.. ..+ ..|+. .++.||+-.. ++.++.||.+|++...-
T Consensus 134 ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNG-DYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEECCCCCEEeecccc-cccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4443 45654321 111 011 12332 2455555432 46899999999987654
No 71
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.96 E-value=5.6 Score=23.02 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=19.5
Q ss_pred CcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 309 GSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 309 ~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
|.+|+...++.++.+|.+|++...-
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEe
Confidence 3456666688999999999998654
No 72
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.42 E-value=7.3 Score=22.72 Aligned_cols=26 Identities=8% Similarity=-0.056 Sum_probs=19.2
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCC
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRD 239 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~ 239 (357)
..+++.+|.+|.-...+ .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC----EEEEEeCCC
Confidence 56788899999988766 999999875
No 73
>PLN02772 guanylate kinase
Probab=73.03 E-value=24 Score=32.81 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=50.8
Q ss_pred CcceEECceEEEEEccCC---CcCEEEEEECCCcceeEec----CCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEE
Q 037345 210 SENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIK----CPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVM 282 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~----lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l 282 (357)
..+|.+++.+|.+.+... ....+.+||..+.+|..-. .|...++ +-.++.-+++|.++... ....=+||.|
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G-hSa~v~~~~rilv~~~~-~~~~~~~w~l 105 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG-YSAVVLNKDRILVIKKG-SAPDDSIWFL 105 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc-ceEEEECCceEEEEeCC-CCCccceEEE
Confidence 678899999999986542 2347899999999998633 2333232 23444557888888865 3445789999
Q ss_pred cC
Q 037345 283 KE 284 (357)
Q Consensus 283 ~~ 284 (357)
+-
T Consensus 106 ~~ 107 (398)
T PLN02772 106 EV 107 (398)
T ss_pred Ec
Confidence 85
No 74
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=72.52 E-value=79 Score=29.05 Aligned_cols=119 Identities=11% Similarity=0.127 Sum_probs=70.9
Q ss_pred eEECceEEEEEccCCCcCEEEEEECCCc------ceeEecCCCCCCCC---CCeEEEE---CCeEEEEEecC-----CCC
Q 037345 213 TYLDRICYWIAWRYNNCQEILSFHMRDE------AFHVIKCPDNSYFP---NPILGVY---DNSLHFLDFDR-----SES 275 (357)
Q Consensus 213 v~~~G~lyw~~~~~~~~~~i~~fD~~~e------~~~~i~lP~~~~~~---~~~l~~~---~g~L~l~~~~~-----~~~ 275 (357)
.-.+|..+|...++ .|...|+++. .|..+..-.....+ ..+.+.. +++|+++.... ...
T Consensus 202 ~~~dg~~~~vs~eG----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 202 SNKSGRLVWPTYTG----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred EcCCCcEEEEecCC----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 33479999998776 8999997554 23333221110111 1122222 34477654321 122
Q ss_pred eEEEEEEcCCeeEEEEEEccCCceeEEEEEeeCCc-EEEEee--CCeEEEEECCCCcE-EEe-eec
Q 037345 276 CFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGS-FFIESN--TNQLLLYDPNTRAL-RDV-GLG 336 (357)
Q Consensus 276 ~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~-i~~~~~--~~~~~~yd~~t~~~-~~v-~~~ 336 (357)
.=+||+++-.++....+|... .....+.+..+++ .++..+ ++.+..+|..+++. +.+ ++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 238999998888888888753 2345566777877 655544 56799999999855 555 444
No 75
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=71.71 E-value=63 Score=27.59 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=68.8
Q ss_pred cceEE--CceEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEE--ECCeEEEEEecCCCCeEEEEEEcCCe
Q 037345 211 ENTYL--DRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGV--YDNSLHFLDFDRSESCFEKWVMKEGS 286 (357)
Q Consensus 211 ~~v~~--~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~--~~g~L~l~~~~~~~~~~~iW~l~~~~ 286 (357)
.+++. +|.+||..... ..|..+|+.+++...+.+|... -++. .+|+|++... ..+.+.-.+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~~~-----G~~~~~~~g~l~v~~~----~~~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPGPN-----GMAFDRPDGRLYVADS----GGIAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSSEE-----EEEEECTTSEEEEEET----TCEEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCCCc-----eEEEEccCCEEEEEEc----CceEEEecCCCc
Confidence 34555 69999998653 5999999999999988887732 2222 3566766543 233333223377
Q ss_pred eEEEEEEccCC-ce--eEEEEEeeCCcEEEEeeC---------CeEEEEECCCCcEEEe
Q 037345 287 WTKQLSVGPIL-GV--LRALEFWKNGSFFIESNT---------NQLLLYDPNTRALRDV 333 (357)
Q Consensus 287 W~~~~~i~~~~-~~--~~~~~~~~~~~i~~~~~~---------~~~~~yd~~t~~~~~v 333 (357)
+.......... .. ..-+.+..+|.+++-... ++++.++.+ ++.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 77777663221 23 334555667888886541 468999999 676666
No 76
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=70.30 E-value=57 Score=28.97 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=44.7
Q ss_pred CCeEEEEEEcC-CeeEEEEEEccCCceeEEEEEeeCCcE-EEEeeCCeEEEEECCCCcEEEeeecCCcEEEEEeeeccc
Q 037345 274 ESCFEKWVMKE-GSWTKQLSVGPILGVLRALEFWKNGSF-FIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLI 350 (357)
Q Consensus 274 ~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~y~~sl~ 350 (357)
+..++||.+++ +.=+-+-....... ..-++..++|.- +.-..|+.+-.||+.+++...|+.-......+.+++.+.
T Consensus 49 D~tVR~wevq~~g~~~~ka~~~~~~P-vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~ 126 (347)
T KOG0647|consen 49 DGTVRIWEVQNSGQLVPKAQQSHDGP-VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMN 126 (347)
T ss_pred CCceEEEEEecCCcccchhhhccCCC-eEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCC
Confidence 57899999997 22111111111111 122333345554 444558899999999999999976544445555555443
No 77
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=66.47 E-value=13 Score=27.38 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=29.3
Q ss_pred CeEEEEecccc-chhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEE
Q 037345 115 NRISIWNLATR-EFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFIL 165 (357)
Q Consensus 115 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~ 165 (357)
..++++||.|+ .|+..- +. .....+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvPs~--~~---------~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIPAS--KH---------AVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEeCC--CC---------ceeEEEEecCCCcEEEEEEec
Confidence 36799999996 776333 21 126778899999999999963
No 78
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=64.89 E-value=1.1e+02 Score=27.56 Aligned_cols=104 Identities=12% Similarity=0.125 Sum_probs=52.5
Q ss_pred Cce-EEEEEccCCCcCEEEEEECC-CcceeEec-CCCCCCCCCCeEE-EECCe-EEEEEecCCCCeEEEEEEcC-Ce-eE
Q 037345 216 DRI-CYWIAWRYNNCQEILSFHMR-DEAFHVIK-CPDNSYFPNPILG-VYDNS-LHFLDFDRSESCFEKWVMKE-GS-WT 288 (357)
Q Consensus 216 ~G~-lyw~~~~~~~~~~i~~fD~~-~e~~~~i~-lP~~~~~~~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~~-~~-W~ 288 (357)
+|. +|.-... ...|.+|+++ +.++..+. .|.. ... ..++ ..+|+ |++... ....+.+|-+++ +. ..
T Consensus 45 d~~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~~~~~-~~p-~~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~ 117 (330)
T PRK11028 45 DKRHLYVGVRP---EFRVLSYRIADDGALTFAAESPLP-GSP-THISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVA 117 (330)
T ss_pred CCCEEEEEECC---CCcEEEEEECCCCceEEeeeecCC-CCc-eEEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCC
Confidence 454 4554332 3577788876 45565433 2211 111 1333 33566 444443 467899999874 22 12
Q ss_pred EEEEEccCCceeEEEEEeeCCcEEEEee--CCeEEEEECCC
Q 037345 289 KQLSVGPILGVLRALEFWKNGSFFIESN--TNQLLLYDPNT 327 (357)
Q Consensus 289 ~~~~i~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~yd~~t 327 (357)
....+... .-...+.+..+|+.++..+ ++.+..||+++
T Consensus 118 ~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 118 PIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 22222211 1112234555666555433 57899999876
No 79
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=64.56 E-value=6.3 Score=24.20 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.2
Q ss_pred CeEEEEeccccchhcCCCCCCC
Q 037345 115 NRISIWNLATREFRALPKWKGE 136 (357)
Q Consensus 115 ~~~~V~NP~T~~~~~LP~~~~~ 136 (357)
..++++||.|++|.+++..|..
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCC
Confidence 3579999999999999776654
No 80
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=64.09 E-value=18 Score=22.12 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=27.2
Q ss_pred CeEEEECCeEEEEEec----CCCCeEEEEEEcC--CeeEEEE
Q 037345 256 PILGVYDNSLHFLDFD----RSESCFEKWVMKE--GSWTKQL 291 (357)
Q Consensus 256 ~~l~~~~g~L~l~~~~----~~~~~~~iW~l~~--~~W~~~~ 291 (357)
...++.+++|+++... .....-++|+++. .+|.+.-
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 3566889999999876 2456678888887 8898754
No 81
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=63.30 E-value=1.4e+02 Score=28.44 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=24.7
Q ss_pred EEEEeeCCcEEEEee-CCeEEEEECCCCcEEEeee
Q 037345 302 ALEFWKNGSFFIESN-TNQLLLYDPNTRALRDVGL 335 (357)
Q Consensus 302 ~~~~~~~~~i~~~~~-~~~~~~yd~~t~~~~~v~~ 335 (357)
-+.+..+|+.+++.+ ..++..+|+++++.+.++-
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 344456677555544 5689999999999999943
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.44 E-value=18 Score=25.81 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.0
Q ss_pred CCeEEEEECCCCcEEEe
Q 037345 317 TNQLLLYDPNTRALRDV 333 (357)
Q Consensus 317 ~~~~~~yd~~t~~~~~v 333 (357)
.++++.||++|++.+.+
T Consensus 36 ~GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVL 52 (89)
T ss_dssp -EEEEEEETTTTEEEEE
T ss_pred CcCEEEEECCCCeEEEe
Confidence 47899999999999888
No 83
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=58.52 E-value=1.6e+02 Score=27.40 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=77.6
Q ss_pred cceEECceEEEEEccCCCcCEEEEEECCCcceeEecCCCCC-CCCCCeEEEECCeEEEEEecC-CCCeEEEEEEcC-Cee
Q 037345 211 ENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNS-YFPNPILGVYDNSLHFLDFDR-SESCFEKWVMKE-GSW 287 (357)
Q Consensus 211 ~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~-~~~~~~l~~~~g~L~l~~~~~-~~~~~~iW~l~~-~~W 287 (357)
-+...||.+...+..+ ..|-+.|..+++.-.-. +... ......+...+|++.-.+++. .+..+.+|--++ ++=
T Consensus 179 ~sfn~dGs~l~TtckD---KkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 179 MSFNRDGSLLCTTCKD---KKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred EEeccCCceeeeeccc---ceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc
Confidence 3445677777776554 58889999988775544 2222 222244556677766555543 567888998887 222
Q ss_pred EEEEEEccCCceeEEEEEeeCCcEEEEee-CCeEEEEECCCCc--EEEe
Q 037345 288 TKQLSVGPILGVLRALEFWKNGSFFIESN-TNQLLLYDPNTRA--LRDV 333 (357)
Q Consensus 288 ~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~yd~~t~~--~~~v 333 (357)
.-...++..+++..|++=.+.+-||++.. |+.+=+|...... +..+
T Consensus 255 ~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 255 IALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 55667887778888887544556777754 6678888887776 5555
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.79 E-value=1.4e+02 Score=26.75 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=62.1
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCcceeE-ecCCCCCCCCCCeEEEECCeE---EEEEecCCCCeEEEEEEcCC
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHV-IKCPDNSYFPNPILGVYDNSL---HFLDFDRSESCFEKWVMKEG 285 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~l~~~~g~L---~l~~~~~~~~~~~iW~l~~~ 285 (357)
-.+|.++|-.---.. ....|..||+.+..=.- +--+.. .++..-..+.+ .|+... ++..+.||..++
T Consensus 46 itavAVs~~~~aSGs---sDetI~IYDm~k~~qlg~ll~Hag----sitaL~F~~~~S~shLlS~s-dDG~i~iw~~~~- 116 (362)
T KOG0294|consen 46 ITALAVSGPYVASGS---SDETIHIYDMRKRKQLGILLSHAG----SITALKFYPPLSKSHLLSGS-DDGHIIIWRVGS- 116 (362)
T ss_pred eeEEEecceeEeccC---CCCcEEEEeccchhhhcceecccc----ceEEEEecCCcchhheeeec-CCCcEEEEEcCC-
Confidence 456667775432222 24689999988754321 111211 12222222332 455544 567888998765
Q ss_pred eeEEEEEEccCCceeEEEEEeeCCcEEE-EeeCCeEEEEECCCCcEEEe
Q 037345 286 SWTKQLSVGPILGVLRALEFWKNGSFFI-ESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 286 ~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~yd~~t~~~~~v 333 (357)
|....++-....-...+.++..|++-+ +..|..+-.+|+-+++.-.+
T Consensus 117 -W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 117 -WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred -eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence 888888865544455566666666544 34455555666655555444
No 85
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=57.69 E-value=1.8e+02 Score=27.92 Aligned_cols=70 Identities=20% Similarity=0.403 Sum_probs=41.5
Q ss_pred CCCeEEEEEEcC-CeeEEEEEEccCCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEeeecCCcEEEEEeeec
Q 037345 273 SESCFEKWVMKE-GSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKES 348 (357)
Q Consensus 273 ~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v~~~~~~~~~~~y~~s 348 (357)
....+.+|- +. -.|.++..- + ..-.+++..|-+.+-...+..++.|.+|+.+-.+.-.++...+..|.|+
T Consensus 388 qdk~v~lW~-~~k~~wt~~~~d-~----~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 388 QDKHVRLWN-DHKLEWTKIIED-P----AECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPD 458 (626)
T ss_pred CcceEEEcc-CCceeEEEEecC-c----eeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCC
Confidence 455677777 43 677775422 2 2344555556333334477888888888877776444455556555553
No 86
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.07 E-value=1.6e+02 Score=26.49 Aligned_cols=108 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred CceEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC-CeeEEEEEEc
Q 037345 216 DRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE-GSWTKQLSVG 294 (357)
Q Consensus 216 ~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~ 294 (357)
.+.+||..-.+ ..|+.+|.++.+-+.+..|..... ..+...+|.|..... .+.++..+. ..|.......
T Consensus 36 ~~~L~w~DI~~---~~i~r~~~~~g~~~~~~~p~~~~~--~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 36 RGALLWVDILG---GRIHRLDPETGKKRVFPSPGGFSS--GALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred CCEEEEEeCCC---CeEEEecCCcCceEEEECCCCccc--ceeecCCCeEEEEcc-----ccEEEeccCCceeEEecccc
Confidence 34679987654 599999999999999999988622 233344444433221 222233233 4554444443
Q ss_pred cCCce--eEEEEEeeCCcEEEEeeC------------CeEEEEECCCCcEEEe
Q 037345 295 PILGV--LRALEFWKNGSFFIESNT------------NQLLLYDPNTRALRDV 333 (357)
Q Consensus 295 ~~~~~--~~~~~~~~~~~i~~~~~~------------~~~~~yd~~t~~~~~v 333 (357)
..... ..-..+..+|.+++-... +.++.+|+.+++.+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~ 158 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL 158 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee
Confidence 22221 222334445666664322 4699999865555554
No 87
>PF13013 F-box-like_2: F-box-like domain
Probab=53.94 E-value=9.4 Score=28.37 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCCCcHHHHHHHHhcCCccccchhhcchH
Q 037345 4 NDDFSEDLLIEILSRLPVKSLMRYKFVCR 32 (357)
Q Consensus 4 ~~~LP~Dll~~IL~rLP~~sl~r~r~VcK 32 (357)
..+||+||+..|+..-..+.+...-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 46799999999999999888866666665
No 88
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=53.42 E-value=80 Score=26.01 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=34.3
Q ss_pred CeEEEEEEcC--CeeEEEEEEccCCceeEEEE-Ee-eCCcEE-EEe-------eCCeEEEEECCCCcEEEe
Q 037345 275 SCFEKWVMKE--GSWTKQLSVGPILGVLRALE-FW-KNGSFF-IES-------NTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 275 ~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~-~~-~~~~i~-~~~-------~~~~~~~yd~~t~~~~~v 333 (357)
.-=.||+.+. .+| ....+++...-..|-. .| .+..++ ++. .++.++.||+.|+++..+
T Consensus 86 giGkIYIkn~~~~~~-~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~l 155 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNW-WSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTEL 155 (200)
T ss_pred cceeEEEEecCCCce-EEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEe
Confidence 4457888885 555 3334554432223322 22 334443 332 267899999999999998
No 89
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=49.54 E-value=47 Score=24.78 Aligned_cols=43 Identities=2% Similarity=-0.008 Sum_probs=29.0
Q ss_pred eEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEE
Q 037345 116 RISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILN 166 (357)
Q Consensus 116 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~ 166 (357)
.+.+.||.|+.|..+-+.+. . .+...+.+++..+.|.|+....
T Consensus 10 ~Vm~~d~~tk~W~P~~~~~~-~-------ls~V~~~~~~~~~~yrIvg~~~ 52 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGGSQ-G-------FSRVQIYHHPRNNTFRVVGRKL 52 (111)
T ss_pred EeeEEcCCCCcEEcCCCCCC-C-------cceEEEEEcCCCCEEEEEEeec
Confidence 56889999998664322111 1 1256677888888999998653
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=48.83 E-value=13 Score=33.39 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.0
Q ss_pred CCCCCcHHHHHHHHhcCCc--------cccchhhcchHhHHhhcCC
Q 037345 3 SNDDFSEDLLIEILSRLPV--------KSLMRYKFVCRFWCALIKS 40 (357)
Q Consensus 3 ~~~~LP~Dll~~IL~rLP~--------~sl~r~r~VcK~W~~li~~ 40 (357)
..+.||.+++.+|+.|..- ++++.++.|||.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3568999999999999853 5788999999999987654
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=48.35 E-value=1.9e+02 Score=25.36 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=63.7
Q ss_pred ECceEEEEEccCCCcCEEEEEECCCccee-EecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcCCeeEEEEEE
Q 037345 215 LDRICYWIAWRYNNCQEILSFHMRDEAFH-VIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSV 293 (357)
Q Consensus 215 ~~G~lyw~~~~~~~~~~i~~fD~~~e~~~-~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i 293 (357)
-+|.+|==++.. ++..|..+|+++++.. ..++|...- .=-+...+++|+.++-. +...-++-.+. ..++.++
T Consensus 54 ~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~~d~l~qLTWk--~~~~f~yd~~t--l~~~~~~ 126 (264)
T PF05096_consen 54 DDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRYF--GEGITILGDKLYQLTWK--EGTGFVYDPNT--LKKIGTF 126 (264)
T ss_dssp ETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESS--SSEEEEEETTT--TEEEEEE
T ss_pred CCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCcccc--ceeEEEECCEEEEEEec--CCeEEEEcccc--ceEEEEE
Confidence 456777555433 4679999999998774 678988752 22467789999999873 44444444443 3333344
Q ss_pred ccCCceeEEEEEeeCCcE-EEEeeCCeEEEEECCCCcE-EEe
Q 037345 294 GPILGVLRALEFWKNGSF-FIESNTNQLLLYDPNTRAL-RDV 333 (357)
Q Consensus 294 ~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~yd~~t~~~-~~v 333 (357)
... ...-|++.+|+. ++-....++...|+++-+. ++|
T Consensus 127 ~y~---~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 127 PYP---GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp E-S---SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEE
T ss_pred ecC---CcceEEEcCCCEEEEECCccceEEECCcccceEEEE
Confidence 322 244455566654 4444467899999987655 444
No 92
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=48.22 E-value=2.5e+02 Score=27.05 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=24.6
Q ss_pred CcceEECceEEEEEccCCCcCEEEEEECCCc--ceeE
Q 037345 210 SENTYLDRICYWIAWRYNNCQEILSFHMRDE--AFHV 244 (357)
Q Consensus 210 ~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e--~~~~ 244 (357)
..+++.+|.+|.....+ .+.++|..+. .|+.
T Consensus 55 ~sPvv~~g~vy~~~~~g----~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 55 GTPLVVDGDMYFTTSHS----ALFALDAATGKVLWRY 87 (488)
T ss_pred cCCEEECCEEEEeCCCC----cEEEEECCCChhhcee
Confidence 67899999999987655 8999998764 4654
No 93
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=46.98 E-value=2.3e+02 Score=25.91 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=56.4
Q ss_pred CEEEEEECCCcceeEecCCCCCC-CCCCeEEEECCeEEEEEecCC---CC-----eEEEEEEc------C--CeeEEEEE
Q 037345 230 QEILSFHMRDEAFHVIKCPDNSY-FPNPILGVYDNSLHFLDFDRS---ES-----CFEKWVMK------E--GSWTKQLS 292 (357)
Q Consensus 230 ~~i~~fD~~~e~~~~i~lP~~~~-~~~~~l~~~~g~L~l~~~~~~---~~-----~~~iW~l~------~--~~W~~~~~ 292 (357)
...+.||.++.... .+|.... ......+..+|+|++...... .. .+++-... . ..|.-..
T Consensus 86 ~~t~vyDt~t~av~--~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~- 162 (342)
T PF07893_consen 86 GRTLVYDTDTRAVA--TGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS- 162 (342)
T ss_pred CCeEEEECCCCeEe--ccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc-
Confidence 36889999998887 4444331 112233455888998775421 11 56666443 1 4444433
Q ss_pred Ecc--CCce-------eEEEEEeeCCc-EEEEeeCC--eEEEEECCCCcEEEee
Q 037345 293 VGP--ILGV-------LRALEFWKNGS-FFIESNTN--QLLLYDPNTRALRDVG 334 (357)
Q Consensus 293 i~~--~~~~-------~~~~~~~~~~~-i~~~~~~~--~~~~yd~~t~~~~~v~ 334 (357)
+++ .... ..-.++. +|. |++-.... ..++||.++.+|+++|
T Consensus 163 LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 163 LPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred CCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 322 1111 2223333 455 44434444 7999999999999993
No 94
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=46.44 E-value=82 Score=30.99 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=64.5
Q ss_pred ECceEEEEEccCCCcCEEEEEECCCcceeE----ecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcCCeeEEE
Q 037345 215 LDRICYWIAWRYNNCQEILSFHMRDEAFHV----IKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQ 290 (357)
Q Consensus 215 ~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~----i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~ 290 (357)
-.-.||...+++ .|.-||.....|+. +.-|.......+.+.-..|...++... ++.++..|-++...=...
T Consensus 63 ~eHiLavadE~G----~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsas-GDsT~r~Wdvk~s~l~G~ 137 (720)
T KOG0321|consen 63 KEHILAVADEDG----GIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSAS-GDSTIRPWDVKTSRLVGG 137 (720)
T ss_pred ccceEEEecCCC----ceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEcc-CCceeeeeeeccceeecc
Confidence 344566655555 89999999988871 222222222224555556888888877 678999999998221111
Q ss_pred -EEEccCCceeEEEEEeeCCcEEEEe--eCCeEEEEECCCCcEEE
Q 037345 291 -LSVGPILGVLRALEFWKNGSFFIES--NTNQLLLYDPNTRALRD 332 (357)
Q Consensus 291 -~~i~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~yd~~t~~~~~ 332 (357)
.-++.. +-..-+++...+..+|+. .|+.+..+|.+-+.+..
T Consensus 138 ~~~~GH~-~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 138 RLNLGHT-GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred eeecccc-cccchhhhccCCCcceeeccCCCcEEEEEEeccchhh
Confidence 112211 112334444444444443 37788888887766433
No 95
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=45.72 E-value=41 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=23.8
Q ss_pred eeCCcEEEEee-----CCeEEEEECCCCcEEEeeec
Q 037345 306 WKNGSFFIESN-----TNQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 306 ~~~~~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 336 (357)
.-+|-++.... ...+++||+++.+++.+..+
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 34677766533 46799999999999999875
No 96
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=45.36 E-value=3.6e+02 Score=27.67 Aligned_cols=102 Identities=21% Similarity=0.363 Sum_probs=59.9
Q ss_pred CEEEEEECCCccee---EecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--------CeeEEEEEEccCC-
Q 037345 230 QEILSFHMRDEAFH---VIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--------GSWTKQLSVGPIL- 297 (357)
Q Consensus 230 ~~i~~fD~~~e~~~---~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--------~~W~~~~~i~~~~- 297 (357)
...-.|+.....|. .|..|.........+....-.-..+..+ .+..+.||.+.+ ..|..+. |....
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy~k 509 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-VDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSYHK 509 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-cCCeEEEEEEecccccCcCccceEEee-eecccc
Confidence 35566777777774 4667766521111111111111222332 478999999954 6798865 33221
Q ss_pred ceeEEEEEeeCCcEEEEeeCCeEEEEECCC-CcEEEe
Q 037345 298 GVLRALEFWKNGSFFIESNTNQLLLYDPNT-RALRDV 333 (357)
Q Consensus 298 ~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t-~~~~~v 333 (357)
.-....++.++|.++...-++.+-.||..+ ++++..
T Consensus 510 ~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 510 TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcc
Confidence 112334455788888888899999999999 554444
No 97
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.36 E-value=4.4e+02 Score=28.47 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=44.4
Q ss_pred cCEEEEEECCCcceeEecCCCCCCCC-CCeEE-EECCe-EEEEEecCCCCeEEEEEEcCCeeEEEEEEcc
Q 037345 229 CQEILSFHMRDEAFHVIKCPDNSYFP-NPILG-VYDNS-LHFLDFDRSESCFEKWVMKEGSWTKQLSVGP 295 (357)
Q Consensus 229 ~~~i~~fD~~~e~~~~i~lP~~~~~~-~~~l~-~~~g~-L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~ 295 (357)
...|+-|.-...+-..+.+|...+.. .-.|. ..++. |++.........+++|......|-++..+.-
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~ 334 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF 334 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence 34688888888888877777665322 12333 34455 5554444345559999999999999877753
No 98
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=43.76 E-value=68 Score=18.94 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=28.4
Q ss_pred CeEEEECCeEEEEEecCC--CCeEEEEEEcC--CeeEEEEEE
Q 037345 256 PILGVYDNSLHFLDFDRS--ESCFEKWVMKE--GSWTKQLSV 293 (357)
Q Consensus 256 ~~l~~~~g~L~l~~~~~~--~~~~~iW~l~~--~~W~~~~~i 293 (357)
...+..+++|++++.... ...-.++.++- ..|...-.+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 356788999999997543 45566777776 999987655
No 99
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.89 E-value=1.2e+02 Score=28.28 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred EEECCeEEEEEecCCCCeEEEEEEcCCeeEEEEE-EccCCceeEE-EEEeeCC-cEEEEe-eCCeEEEEECCCCcEEEe
Q 037345 259 GVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLS-VGPILGVLRA-LEFWKNG-SFFIES-NTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 259 ~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~-i~~~~~~~~~-~~~~~~~-~i~~~~-~~~~~~~yd~~t~~~~~v 333 (357)
...+|++.++.. ....+.+|-+++ |..+.. .+...+.+-+ .++.+.+ +++.-. +|.+++.++.++++.-.+
T Consensus 403 iS~d~k~~LvnL--~~qei~LWDl~e--~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 403 ISKDGKLALVNL--QDQEIHLWDLEE--NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred EcCCCcEEEEEc--ccCeeEEeecch--hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 355789999988 478999999996 333221 2222222222 3333434 344433 378999999999888665
No 100
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=42.36 E-value=99 Score=26.71 Aligned_cols=84 Identities=10% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--------CeeEEEEEEcc-CCceeEEEEEe---eCCcEEEE
Q 037345 247 CPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--------GSWTKQLSVGP-ILGVLRALEFW---KNGSFFIE 314 (357)
Q Consensus 247 lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--------~~W~~~~~i~~-~~~~~~~~~~~---~~~~i~~~ 314 (357)
.|...+.....-+...+.+.+.+. ...+.=|.-.+ ..|.++--+.. ...+..+-+++ .++.|++.
T Consensus 56 v~eqahdgpiy~~~f~d~~Lls~g---dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A 132 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHDDFLLSGG---DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA 132 (325)
T ss_pred eeccccCCCeeeeeeehhheeecc---CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe
Q ss_pred eeCCeEEEEECCCCcEEEe
Q 037345 315 SNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 315 ~~~~~~~~yd~~t~~~~~v 333 (357)
..|+.++..|++++++++.
T Consensus 133 gGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred cCCeEEEEEEecCCEEEEE
No 101
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=40.50 E-value=2.1e+02 Score=28.38 Aligned_cols=110 Identities=15% Similarity=0.234 Sum_probs=66.5
Q ss_pred EECceEEEEEccCCCcCEEEEEECCCcceeEec--CCCCCCCCCCeEEEE-CCe-EEEEEecCCCCeEEEEEEcC--Cee
Q 037345 214 YLDRICYWIAWRYNNCQEILSFHMRDEAFHVIK--CPDNSYFPNPILGVY-DNS-LHFLDFDRSESCFEKWVMKE--GSW 287 (357)
Q Consensus 214 ~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~--lP~~~~~~~~~l~~~-~g~-L~l~~~~~~~~~~~iW~l~~--~~W 287 (357)
..++..-+++.. ....+..|+++++.+.++. .|......-..++.. +|. |+++.. ...+.+|-|+. ..|
T Consensus 437 tid~~k~~~~s~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~~~~ 511 (691)
T KOG2048|consen 437 TIDKNKLFLVSK--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETLESHL 511 (691)
T ss_pred EecCceEEEEec--ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec---cceEEEEEcccceeec
Confidence 445555555542 2568899999999887653 233222222344433 444 777764 46888999997 444
Q ss_pred EE-EEEEccCCceeEEEEEe--eCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 288 TK-QLSVGPILGVLRALEFW--KNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 288 ~~-~~~i~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
.+ ...+. ....++. ..+.+++...+++++.||++.+++.+-
T Consensus 512 l~~rln~~-----vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~w 555 (691)
T KOG2048|consen 512 LKVRLNID-----VTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRW 555 (691)
T ss_pred chhccCcc-----eeeeeccccccCcEEEEecCCeEEEEecchhhhhhh
Confidence 44 12211 2233332 357788888899999999977665554
No 102
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=38.95 E-value=3.1e+02 Score=25.08 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=68.5
Q ss_pred ccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCC--CCCCCcceE
Q 037345 103 CNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDN--TRKDSVSTE 180 (357)
Q Consensus 103 ~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~--~~~~~~~~~ 180 (357)
.+.-|+..+.. .+.+|+++.|+....+|.+....... +.+.. .++ +..+....... .......+|
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~pk~~p-------isv~V---G~~--LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHSPKRCP-------ISVSV---GDK--LYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCCCCcce-------EEEEe---CCe--EEEeeccCccccccCccceeEE
Confidence 34444444333 34699999999999999866432211 11111 122 33332222110 000011556
Q ss_pred EEEEE--------cCCCceeecccCCcccccccCC-----CCCcceEECceEEEEEccCCCcCEEEEEECCCcceeEe--
Q 037345 181 VILHT--------LSTDSWRYLKANELSDYSFLGG-----QQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVI-- 245 (357)
Q Consensus 181 ~~vys--------s~t~~W~~~~~~~~~~~~~~~~-----~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i-- 245 (357)
+-+|. ..+.+|+.++.+| +..... -.+.+|+ +|.--|+...+ ....-.+||+++.+|+..
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PP---f~~~~~~~~~~i~sYavv-~g~~I~vS~~~-~~~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPP---FVRDRRYSDYRITSYAVV-DGRTIFVSVNG-RRWGTYSFDTESHEWRKHGD 216 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCC---ccccCCcccceEEEEEEe-cCCeEEEEecC-CceEEEEEEcCCcceeeccc
Confidence 33444 2234788776633 222111 1144566 88777775443 012689999999999876
Q ss_pred -cCCCCC
Q 037345 246 -KCPDNS 251 (357)
Q Consensus 246 -~lP~~~ 251 (357)
.||..-
T Consensus 217 W~LPF~G 223 (342)
T PF07893_consen 217 WMLPFHG 223 (342)
T ss_pred eecCcCC
Confidence 478654
No 103
>PF15408 PH_7: Pleckstrin homology domain
Probab=38.40 E-value=17 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=19.6
Q ss_pred cccchhhcchHhHHhhcCChHHHH
Q 037345 22 KSLMRYKFVCRFWCALIKSPRFVS 45 (357)
Q Consensus 22 ~sl~r~r~VcK~W~~li~~p~F~~ 45 (357)
+-++..+-|||.|-....+|.|.-
T Consensus 77 ~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 77 QCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhHHHHHHHHHHHhcChhhhh
Confidence 455667789999999999998854
No 104
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=37.35 E-value=3.1e+02 Score=24.86 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=0.0
Q ss_pred EEEECCeEEEEEecCCCCeEEEEEEcCCeeEEEEEEccCCceeEEEEEe-----eCCcEEEEee-CCeEEEEECCCCcEE
Q 037345 258 LGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFW-----KNGSFFIESN-TNQLLLYDPNTRALR 331 (357)
Q Consensus 258 l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~~~~~~~~~~-----~~~~i~~~~~-~~~~~~yd~~t~~~~ 331 (357)
|+..+|+...++.........-|.-....==-+-.|....-+..-+.+. .+|.+++... .+++..+|+++++.+
T Consensus 157 lA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e 236 (335)
T TIGR03032 157 MALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQ 236 (335)
T ss_pred eeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEE
Q ss_pred EeeecCCcEEEEEeeeccc
Q 037345 332 DVGLGTDGLFLHRYKESLI 350 (357)
Q Consensus 332 ~v~~~~~~~~~~~y~~sl~ 350 (357)
.|..-++..+...+..+++
T Consensus 237 ~Va~vpG~~rGL~f~G~ll 255 (335)
T TIGR03032 237 PVAFLPGFTRGLAFAGDFA 255 (335)
T ss_pred EEEECCCCCcccceeCCEE
No 105
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.83 E-value=41 Score=31.83 Aligned_cols=30 Identities=30% Similarity=0.658 Sum_probs=24.9
Q ss_pred eCCcEEEEeeCCeEEEEECCCCcEEEeeec
Q 037345 307 KNGSFFIESNTNQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 307 ~~~~i~~~~~~~~~~~yd~~t~~~~~v~~~ 336 (357)
.+|+-++....+.++.||++|.++++++|.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 356666667789999999999999999765
No 106
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=35.85 E-value=2.3e+02 Score=27.64 Aligned_cols=117 Identities=12% Similarity=0.131 Sum_probs=59.3
Q ss_pred cccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEE
Q 037345 102 NCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEV 181 (357)
Q Consensus 102 s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 181 (357)
+.+|-+|....+..++.||||.-++.... ....+... .+..-|.|.+++=.|+.-..+ .. +
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaN------IFsvKFvP~tnnriv~sgAgD---------k~--i 119 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTAN------IFSVKFVPYTNNRIVLSGAGD---------KL--I 119 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceeee--eecccccc------eeEEeeeccCCCeEEEeccCc---------ce--E
Confidence 45888998888888999999995443322 11111111 344556677666555543211 12 4
Q ss_pred EEEEcCCCceeecccCCcccc---cccCCCCCc-ceEECc-eEEEEEccCCCcCEEEEEECCCc
Q 037345 182 ILHTLSTDSWRYLKANELSDY---SFLGGQQSE-NTYLDR-ICYWIAWRYNNCQEILSFHMRDE 240 (357)
Q Consensus 182 ~vyss~t~~W~~~~~~~~~~~---~~~~~~~~~-~v~~~G-~lyw~~~~~~~~~~i~~fD~~~e 240 (357)
++|+...-+=+-.+..+.... .+..+.-.. ++.=+| ..+|-+.++ ..|..+|+..-
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED---GtirQyDiREp 180 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED---GTIRQYDIREP 180 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC---cceeeecccCC
Confidence 477766422222221111011 110000011 222334 678888665 58888888763
No 107
>PLN02772 guanylate kinase
Probab=32.05 E-value=1.9e+02 Score=27.06 Aligned_cols=75 Identities=4% Similarity=0.073 Sum_probs=48.2
Q ss_pred CeEEEECCeEEEEEecCCC--CeEEEEEEcC--CeeEEEEEEccCC--ceeEEEEEeeCCcEEEEee----CCeEEEEEC
Q 037345 256 PILGVYDNSLHFLDFDRSE--SCFEKWVMKE--GSWTKQLSVGPIL--GVLRALEFWKNGSFFIESN----TNQLLLYDP 325 (357)
Q Consensus 256 ~~l~~~~g~L~l~~~~~~~--~~~~iW~l~~--~~W~~~~~i~~~~--~~~~~~~~~~~~~i~~~~~----~~~~~~yd~ 325 (357)
...+..++++++++...+. .+..+|+++. ..|+.--..+... ....-.++.+++.|+++.. +.++....+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~ 107 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEV 107 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEc
Confidence 3567889999999975433 5789999998 8999876665332 2233344445666666643 345666666
Q ss_pred CCCcE
Q 037345 326 NTRAL 330 (357)
Q Consensus 326 ~t~~~ 330 (357)
.|.-+
T Consensus 108 ~t~~~ 112 (398)
T PLN02772 108 DTPFV 112 (398)
T ss_pred CCHHH
Confidence 65443
No 108
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.91 E-value=4.2e+02 Score=27.75 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=47.0
Q ss_pred eEEEECCeEEEEEecCCCCeEEEEEEcC-CeeEEEEEEccCCceeEEEEEeeCCcEEEE-eeCCeEEEEECCCCcEEEe
Q 037345 257 ILGVYDNSLHFLDFDRSESCFEKWVMKE-GSWTKQLSVGPILGVLRALEFWKNGSFFIE-SNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 257 ~l~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~~v 333 (357)
.-+..++.|=++....++..+.+|.|.+ +-|+.---.+..+.+... -++.+.++++- .+|..+=+||+..++--+.
T Consensus 210 NwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv-lfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 210 NWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV-LFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred ceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE-EecCccceeEecCCCccEEEEecccccceee
Confidence 3345556544444433678999999999 889875444443333232 23445566554 4477788999987765444
No 109
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=31.90 E-value=1.1e+02 Score=27.17 Aligned_cols=109 Identities=9% Similarity=0.119 Sum_probs=62.3
Q ss_pred CcceEEEEEEcCCCceeecccCCccccc-ccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCcceeEecC-C-CCCC
Q 037345 176 SVSTEVILHTLSTDSWRYLKANELSDYS-FLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKC-P-DNSY 252 (357)
Q Consensus 176 ~~~~~~~vyss~t~~W~~~~~~~~~~~~-~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~l-P-~~~~ 252 (357)
+.... +|+..+.+|............ ..+. ...-+++.|.+-.-.. ....+..||..+.+|..+.- . ....
T Consensus 15 C~~lC--~yd~~~~qW~~~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~---~~~~la~yd~~~~~w~~~~~~~s~~ip 88 (281)
T PF12768_consen 15 CPGLC--LYDTDNSQWSSPGNGISGTVTDLQWA-SNNQLLVGGNFTLNGT---NSSNLATYDFKNQTWSSLGGGSSNSIP 88 (281)
T ss_pred CCEEE--EEECCCCEeecCCCCceEEEEEEEEe-cCCEEEEEEeeEECCC---CceeEEEEecCCCeeeecCCcccccCC
Confidence 56777 999999999987764321111 1111 1567788886664331 25699999999999987654 2 1111
Q ss_pred CCCCeEEE--ECC-eEEEEEecC-CCCeEEEEEEcCCeeEEEEE
Q 037345 253 FPNPILGV--YDN-SLHFLDFDR-SESCFEKWVMKEGSWTKQLS 292 (357)
Q Consensus 253 ~~~~~l~~--~~g-~L~l~~~~~-~~~~~~iW~l~~~~W~~~~~ 292 (357)
+.-..+.. .++ .+.+..... ....+..| +..+|.....
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 11111111 232 355555431 33445455 5588988765
No 110
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=31.79 E-value=2.6e+02 Score=24.70 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=53.2
Q ss_pred EEEEEECCCcceeEecCCCCCCCCCCeE-EEECCeEEEEEecCCCCeEEEEEEcC-CeeEEEEEEccCCceeEEEEEeeC
Q 037345 231 EILSFHMRDEAFHVIKCPDNSYFPNPIL-GVYDNSLHFLDFDRSESCFEKWVMKE-GSWTKQLSVGPILGVLRALEFWKN 308 (357)
Q Consensus 231 ~i~~fD~~~e~~~~i~lP~~~~~~~~~l-~~~~g~L~l~~~~~~~~~~~iW~l~~-~~W~~~~~i~~~~~~~~~~~~~~~ 308 (357)
.+=+-|+.+-+.... .|... .+--.+ +.-+|.||.... .+..+-+|-|.+ +. .++++.. ....-+++..+
T Consensus 173 tvKvWnl~~~~l~~~-~~gh~-~~v~t~~vSpDGslcasGg--kdg~~~LwdL~~~k~---lysl~a~-~~v~sl~fspn 244 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTT-FIGHS-GYVNTVTVSPDGSLCASGG--KDGEAMLWDLNEGKN---LYSLEAF-DIVNSLCFSPN 244 (315)
T ss_pred eEEEEccCCcchhhc-ccccc-ccEEEEEECCCCCEEecCC--CCceEEEEEccCCce---eEeccCC-CeEeeEEecCC
Confidence 555566665544321 12121 121222 345899998765 578899999998 32 4555543 22355555554
Q ss_pred CcEEEEeeCCeEEEEECCCCcE
Q 037345 309 GSFFIESNTNQLLLYDPNTRAL 330 (357)
Q Consensus 309 ~~i~~~~~~~~~~~yd~~t~~~ 330 (357)
.-.+....+..+-.||+++++.
T Consensus 245 rywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 245 RYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ceeEeeccCCceEEEeccchhh
Confidence 4344444466788899888876
No 111
>PTZ00420 coronin; Provisional
Probab=31.60 E-value=5.3e+02 Score=25.61 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=61.0
Q ss_pred CceEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEE-----ECCeEEEEEe-cC-CCCeEEEEEEcC-Cee
Q 037345 216 DRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGV-----YDNSLHFLDF-DR-SESCFEKWVMKE-GSW 287 (357)
Q Consensus 216 ~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~-----~~g~L~l~~~-~~-~~~~~~iW~l~~-~~W 287 (357)
+|.+.-.+.. ...|..+|+.+.+-.. .++..........+. .++...+.+. +. ....+.||-+.. .+=
T Consensus 178 dG~lLat~s~---D~~IrIwD~Rsg~~i~-tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 178 KGNLLSGTCV---GKHMHIIDPRKQEIAS-SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred CCCEEEEEec---CCEEEEEECCCCcEEE-EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 5655433322 2478889998765432 122221111111111 2444434333 21 225799999986 443
Q ss_pred EEEEEEccCCceeEEEEEeeCCcEEEEe-eCCeEEEEECCCCcEEEe
Q 037345 288 TKQLSVGPILGVLRALEFWKNGSFFIES-NTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 288 ~~~~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~~~~v 333 (357)
.....++.......|..-..+|.+|+.. .|+.+.+|++.++.+..+
T Consensus 254 l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 254 LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 3334444333334455444456677665 478899999998887777
No 112
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=30.21 E-value=4.3e+02 Score=24.19 Aligned_cols=170 Identities=9% Similarity=-0.014 Sum_probs=77.9
Q ss_pred EeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCc--eee-cccCCcccccccCCCCCcceEECceE-EEEEcc
Q 037345 150 FELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDS--WRY-LKANELSDYSFLGGQQSENTYLDRIC-YWIAWR 225 (357)
Q Consensus 150 lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~--W~~-~~~~~~~~~~~~~~~~~~~v~~~G~l-yw~~~~ 225 (357)
+...+..+.+.+.-.+..... +....-.++ +|+..|-+ +.. ++..+. ...... .....+..+|.. |.....
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~-rG~RtDvv~--~~D~~TL~~~~EI~iP~k~R-~~~~~~-~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGT-RGERTDVVE--IWDTQTLSPTGEIEIPPKPR-AQVVPY-KNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETT-EEEEEEEEE--EEETTTTEEEEEEEETTS-B---BS---GGGEEE-TTSSEEEEEEES
T ss_pred eeECCCCCEEEEEEEEEeccc-cccceeEEE--EEecCcCcccceEecCCcch-heeccc-ccceEEccCCcEEEEEccC
Confidence 445555555555544332221 111223445 99998864 322 333211 111000 003455567744 333333
Q ss_pred CCCcCEEEEEECCCcce-eEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--CeeEEEEEE-ccC-Cc-e
Q 037345 226 YNNCQEILSFHMRDEAF-HVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GSWTKQLSV-GPI-LG-V 299 (357)
Q Consensus 226 ~~~~~~i~~fD~~~e~~-~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i-~~~-~~-~ 299 (357)
....|-+.|++..++ .+|+.|.+..-+ -..++....+|. +..+.-=.|++ +.=.+.-.+ .+. +. +
T Consensus 116 --Pa~SVtVVDl~~~kvv~ei~~PGC~~iy----P~~~~~F~~lC~---DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 116 --PATSVTVVDLAAKKVVGEIDTPGCWLIY----PSGNRGFSMLCG---DGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp --SSEEEEEEETTTTEEEEEEEGTSEEEEE----EEETTEEEEEET---TSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred --CCCeEEEEECCCCceeeeecCCCEEEEE----ecCCCceEEEec---CCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 256999999999988 678999775110 011233333333 23333334443 110111112 221 12 2
Q ss_pred eEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 300 LRALEFWKNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 300 ~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
..+.....++..+|..-.+.++..|+...+.+-.
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG 220 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCccccc
Confidence 3344333445567776677788777777665443
No 113
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.62 E-value=5.6e+02 Score=25.29 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=55.1
Q ss_pred eEEEEEccCCCcCEEEEEECCCcceeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcCCeeEEEEE----E
Q 037345 218 ICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLS----V 293 (357)
Q Consensus 218 ~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~----i 293 (357)
-||..+... .|..|+++-++|- -|...+......+..+..=.|++....+..++.|-..+.+=..... +
T Consensus 147 Dly~~gsg~----evYRlNLEqGrfL---~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 147 DLYLVGSGS----EVYRLNLEQGRFL---NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred cEEEeecCc----ceEEEEccccccc---cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccccc
Confidence 355444433 7999999998884 2222222233344333332333333357889999888721111111 1
Q ss_pred ccCC---ce--eEEEEEeeCCcEEEE-eeCCeEEEEECCCCcEEEe
Q 037345 294 GPIL---GV--LRALEFWKNGSFFIE-SNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 294 ~~~~---~~--~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~~v 333 (357)
+... .. ...+.+.++|--+=+ ...+.++.||+++.+--.+
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 1111 11 222333333322333 4478899999998775444
No 114
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=28.40 E-value=4.1e+02 Score=23.34 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=70.6
Q ss_pred EEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCCCcCEEEEEECCCc-ceeEecCCCCCCCCCCeEE
Q 037345 181 VILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDE-AFHVIKCPDNSYFPNPILG 259 (357)
Q Consensus 181 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~i~~fD~~~e-~~~~i~lP~~~~~~~~~l~ 259 (357)
++.|+..|++=......+. ..+ ......+++.+|-+++.. ...+.||.++- ....++.|. .++ -|+
T Consensus 70 l~~~d~~tg~~~~~~~l~~---~~F---gEGit~~~d~l~qLTWk~---~~~f~yd~~tl~~~~~~~y~~--EGW--GLt 136 (264)
T PF05096_consen 70 LRKVDLETGKVLQSVPLPP---RYF---GEGITILGDKLYQLTWKE---GTGFVYDPNTLKKIGTFPYPG--EGW--GLT 136 (264)
T ss_dssp EEEEETTTSSEEEEEE-TT---T-----EEEEEEETTEEEEEESSS---SEEEEEETTTTEEEEEEE-SS--S----EEE
T ss_pred EEEEECCCCcEEEEEECCc---ccc---ceeEEEECCEEEEEEecC---CeEEEEccccceEEEEEecCC--cce--EEE
Confidence 4488888876432221111 111 145567899999999985 68899999863 334455553 233 455
Q ss_pred EECCeEEEEEecCCCCeEEEEEEcCCeeEEEEEEccCC---ce--eEEEEEeeCCcEEEE-eeCCeEEEEECCCCcEEEe
Q 037345 260 VYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPIL---GV--LRALEFWKNGSFFIE-SNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 260 ~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~~~---~~--~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~~v 333 (357)
..+..|.+... .. .|+.++-.....+.+|.... .+ ..-+-+ .+|.|+-- .....++..|++|+++...
T Consensus 137 ~dg~~Li~SDG---S~--~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 137 SDGKRLIMSDG---SS--RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp ECSSCEEEE-S---SS--EEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred cCCCEEEEECC---cc--ceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 44444554433 22 34555543333444443211 11 111222 25666654 3377899999999999876
No 115
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=27.90 E-value=1.8e+02 Score=25.07 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=35.0
Q ss_pred ccceEEEeecCCCeEEEEeccccchhcC--CCCCCCCCCccccccceeEEeeeCCCCCeEEEE
Q 037345 103 CNGLFCLHDKNSNRISIWNLATREFRAL--PKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIF 163 (357)
Q Consensus 103 ~~GLll~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~ 163 (357)
.+|.|.-.. ...++|..||.|+.-..+ .+...... . ..+++-|+|..++-+||.
T Consensus 37 a~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s~~~~al~-g-----~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 37 ANGQLYGLG-STGRLYTINPATGAATPVGASPLTVALS-G-----TAFGVDFNPAADRLRVVS 92 (236)
T ss_pred CCCCEEEEe-CCCcEEEEECCCCeEEEeeccccccccc-C-----ceEEEecCcccCcEEEEc
Confidence 356665443 334789999999997666 33322211 1 167888889888877775
No 116
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=26.73 E-value=5e+02 Score=23.76 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred CceEEEEEccCCCcCEEEEEECCCcceeEecCCCCC--CCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--CeeEEEE
Q 037345 216 DRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNS--YFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GSWTKQL 291 (357)
Q Consensus 216 ~G~lyw~~~~~~~~~~i~~fD~~~e~~~~i~lP~~~--~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~ 291 (357)
+|.+-+.+.-+ ...|..||++.........-... .+.+-....-+|+++.+... -..++.+|..+. .+-..+-
T Consensus 155 ~~~~l~v~DLG--~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 155 DGRYLVVPDLG--TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CCCEEEEeecC--CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEee
Q ss_pred EEccCCce------eEEEEEeeCCcEEEEee----CCeEEEEECCCCcEEEeee
Q 037345 292 SVGPILGV------LRALEFWKNGSFFIESN----TNQLLLYDPNTRALRDVGL 335 (357)
Q Consensus 292 ~i~~~~~~------~~~~~~~~~~~i~~~~~----~~~~~~yd~~t~~~~~v~~ 335 (357)
++.....- ..-+-+..+|..+..++ .--++.-|..+++++-++.
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
No 117
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=26.67 E-value=1.1e+02 Score=23.02 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.2
Q ss_pred CcEEEEeeCCeEEEEECCCCcEEEee
Q 037345 309 GSFFIESNTNQLLLYDPNTRALRDVG 334 (357)
Q Consensus 309 ~~i~~~~~~~~~~~yd~~t~~~~~v~ 334 (357)
.-++++...+.++.||++++.+-.+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 34566677899999999999998883
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=25.55 E-value=5.3e+02 Score=25.83 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=47.9
Q ss_pred CeEEEEEecCCCCeEEEEEEcCCeeEEEEEEcc-CCceeEEEEEeeCCcEEEEeeCCeEEEEECCCCcEEEe
Q 037345 263 NSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGP-ILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 263 g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 333 (357)
++|++.. ....+|||-+.. .|-....|.- .+.-...++..+++.+|=..-++.+.-||+.+.+-++.
T Consensus 38 ~~lAvsR---t~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 38 NQLAVSR---TDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred Cceeeec---cCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE
Confidence 3355443 468999999995 7888777743 33344555655677787777788999999998887666
No 119
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=23.88 E-value=4.7e+02 Score=23.46 Aligned_cols=65 Identities=18% Similarity=0.239 Sum_probs=38.8
Q ss_pred CCeEEEEEecCCCCeEEEEEEcC---CeeEEEEEEccCCceeEEEEEeeCCcEEE-EeeCCeEEEEECCCCcEEE
Q 037345 262 DNSLHFLDFDRSESCFEKWVMKE---GSWTKQLSVGPILGVLRALEFWKNGSFFI-ESNTNQLLLYDPNTRALRD 332 (357)
Q Consensus 262 ~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~yd~~t~~~~~ 332 (357)
+|...+... .+..+-+|...+ .-|+.+ .. .....-+-...++..++ +..|..+..||.+|++..+
T Consensus 58 ~gs~~aSgG--~Dr~I~LWnv~gdceN~~~lk---gH-sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 58 DGSCFASGG--SDRAIVLWNVYGDCENFWVLK---GH-SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred CCCeEeecC--CcceEEEEeccccccceeeec---cc-cceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 455444333 367888998554 667766 21 12222233334555555 4558899999999988744
No 120
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=23.60 E-value=46 Score=20.39 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=14.8
Q ss_pred CCCCCcHHHHHHHHhcCCccc
Q 037345 3 SNDDFSEDLLIEILSRLPVKS 23 (357)
Q Consensus 3 ~~~~LP~Dll~~IL~rLP~~s 23 (357)
+.+.+|+|++.++-.=|+-|+
T Consensus 4 pa~~vPedlI~q~q~VLqgks 24 (53)
T PF11547_consen 4 PASQVPEDLINQAQVVLQGKS 24 (53)
T ss_dssp -GGGS-HHHHHHHHHHSTTS-
T ss_pred ccccCCHHHHHHHHHHHcCCc
Confidence 557899999998888777654
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=23.22 E-value=1.6e+02 Score=28.43 Aligned_cols=84 Identities=13% Similarity=0.224 Sum_probs=45.4
Q ss_pred EECCeEEEEEecCCCCeEEEEEEcC-----CeeEEEEEEccCCceeEEEEEeeCCcEEEEee-------CCeEEEEECCC
Q 037345 260 VYDNSLHFLDFDRSESCFEKWVMKE-----GSWTKQLSVGPILGVLRALEFWKNGSFFIESN-------TNQLLLYDPNT 327 (357)
Q Consensus 260 ~~~g~L~l~~~~~~~~~~~iW~l~~-----~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~yd~~t 327 (357)
.++|+..+... ...++.+|-|.. ..|+-..+.-+ .--.++..+.++++... .+.++.||..|
T Consensus 373 S~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~~----~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 373 SYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPFP----GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccccchhhhcc--CCCceeeeeccccccchhhhcCCCccCC----CCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 45677544444 578999999987 34433322211 12234455667777532 34688888665
Q ss_pred C-cEEEeeecCCcEEEEEeeecc
Q 037345 328 R-ALRDVGLGTDGLFLHRYKESL 349 (357)
Q Consensus 328 ~-~~~~v~~~~~~~~~~~y~~sl 349 (357)
= .+.+|++.+.....+.+.|.|
T Consensus 447 ~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 447 LDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred eeeEEEecCCCceEEEEeecchh
Confidence 3 234446654334444444444
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=23.09 E-value=9.8e+02 Score=25.93 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.2
Q ss_pred Cce-EEEEEccCCCcCEEEEEECCCcceeEec-----CCCCC---------------CCCCCeEEEECCeEEEEEecCCC
Q 037345 216 DRI-CYWIAWRYNNCQEILSFHMRDEAFHVIK-----CPDNS---------------YFPNPILGVYDNSLHFLDFDRSE 274 (357)
Q Consensus 216 ~G~-lyw~~~~~~~~~~i~~fD~~~e~~~~i~-----lP~~~---------------~~~~~~l~~~~g~L~l~~~~~~~ 274 (357)
+|. +|..... ...|..+|+.+.....+- .|... .......+..+|.|+++.. ..
T Consensus 750 dG~~LYVADs~---n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs--~N 824 (1057)
T PLN02919 750 DLKELYIADSE---SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS--YN 824 (1057)
T ss_pred CCCEEEEEECC---CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC--CC
Confidence 454 7766543 368999999876543221 11110 0011112234678877765 46
Q ss_pred CeEEEEEEcCCeeEEEEEEcc---------CCceeEEE--EEeeCCcEEEEee-CCeEEEEECCCCcE
Q 037345 275 SCFEKWVMKEGSWTKQLSVGP---------ILGVLRAL--EFWKNGSFFIESN-TNQLLLYDPNTRAL 330 (357)
Q Consensus 275 ~~~~iW~l~~~~W~~~~~i~~---------~~~~~~~~--~~~~~~~i~~~~~-~~~~~~yd~~t~~~ 330 (357)
.++.+|-.+...-......+. ...+..|. ++..+|.+|+... ++.+-.+|+++++.
T Consensus 825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 788888776532222211110 01122444 4456788877754 56789999999876
No 123
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=22.60 E-value=1.5e+02 Score=16.29 Aligned_cols=38 Identities=8% Similarity=0.190 Sum_probs=23.3
Q ss_pred eEEEEEEccCCceeEEEEEeeCCcEEEEee-CCeEEEEE
Q 037345 287 WTKQLSVGPILGVLRALEFWKNGSFFIESN-TNQLLLYD 324 (357)
Q Consensus 287 W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~yd 324 (357)
|..+.++........-+.+..++..++... |+.+..||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 556666654444455566666666666544 67787776
No 124
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=22.24 E-value=1.6e+02 Score=22.30 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=16.3
Q ss_pred eCCeEEEEECCCCcEEEeeec
Q 037345 316 NTNQLLLYDPNTRALRDVGLG 336 (357)
Q Consensus 316 ~~~~~~~yd~~t~~~~~v~~~ 336 (357)
..-.++.||.++++|+|.++.
T Consensus 27 ~~v~vY~f~~~~~~W~K~~iE 47 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWEKTDIE 47 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEE
T ss_pred CeEEEEeecCCCCcEeecCcE
Confidence 344577888899999999876
No 125
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=21.89 E-value=6.4e+02 Score=23.29 Aligned_cols=97 Identities=9% Similarity=0.105 Sum_probs=56.0
Q ss_pred CEEEEEECCCcceeEecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcC--CeeEEEEEEccCCceeEEEEEee
Q 037345 230 QEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKE--GSWTKQLSVGPILGVLRALEFWK 307 (357)
Q Consensus 230 ~~i~~fD~~~e~~~~i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~ 307 (357)
..-..+|..+..| ...++...+.-...-...+|. ++++.+ ....+.||.... ..|.......- ..-+..+.
T Consensus 86 D~AflW~~~~ge~-~~eltgHKDSVt~~~Fshdgt-lLATGd-msG~v~v~~~stg~~~~~~~~e~~d----ieWl~WHp 158 (399)
T KOG0296|consen 86 DLAFLWDISTGEF-AGELTGHKDSVTCCSFSHDGT-LLATGD-MSGKVLVFKVSTGGEQWKLDQEVED----IEWLKWHP 158 (399)
T ss_pred ceEEEEEccCCcc-eeEecCCCCceEEEEEccCce-EEEecC-CCccEEEEEcccCceEEEeecccCc----eEEEEecc
Confidence 4566677777663 234444432211112234454 344444 456788888887 66766644432 23344445
Q ss_pred CCcEEEEe-eCCeEEEEECCCCcEEEe
Q 037345 308 NGSFFIES-NTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 308 ~~~i~~~~-~~~~~~~yd~~t~~~~~v 333 (357)
.+.+++.. .++.+.+|.+..+...++
T Consensus 159 ~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 159 RAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred cccEEEeecCCCcEEEEECCCcceeeE
Confidence 56666664 478899999888777777
No 126
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=21.35 E-value=1.3e+02 Score=16.26 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=12.2
Q ss_pred CCeEEEEECCCCcEE
Q 037345 317 TNQLLLYDPNTRALR 331 (357)
Q Consensus 317 ~~~~~~yd~~t~~~~ 331 (357)
.++.++||.+|++-.
T Consensus 13 ~g~~YY~N~~t~~s~ 27 (31)
T PF00397_consen 13 SGRPYYYNHETGESQ 27 (31)
T ss_dssp TSEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCCEE
Confidence 388999999998753
No 127
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.13 E-value=3.7e+02 Score=23.31 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=30.3
Q ss_pred EEEEEeeCCcEEEEe-eCCeEEEEECCCCcE-EEeeecCCcEEEEEe
Q 037345 301 RALEFWKNGSFFIES-NTNQLLLYDPNTRAL-RDVGLGTDGLFLHRY 345 (357)
Q Consensus 301 ~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~~-~~v~~~~~~~~~~~y 345 (357)
.-+++..+|.+++.. +.+.++.+|+.|+++ .++-++......++|
T Consensus 215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 344555568887764 477899999999887 666666444444443
No 128
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=20.96 E-value=91 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhcCCc-cccchhhcchHhHHhhcCC
Q 037345 5 DDFSEDLLIEILSRLPV-KSLMRYKFVCRFWCALIKS 40 (357)
Q Consensus 5 ~~LP~Dll~~IL~rLP~-~sl~r~r~VcK~W~~li~~ 40 (357)
.+||.+++.+||.|||- .+|...+.|-..-..++.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 58999999999999986 8888877776555555554
No 129
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=20.89 E-value=49 Score=17.11 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.2
Q ss_pred EEEeccccchhcCCC
Q 037345 118 SIWNLATREFRALPK 132 (357)
Q Consensus 118 ~V~NP~T~~~~~LP~ 132 (357)
+|||.+++.|+..+.
T Consensus 7 ~iwn~~~~~~vvvsE 21 (24)
T PF13018_consen 7 LIWNKARGTWVVVSE 21 (24)
T ss_pred EEEECCCCeEEEEee
Confidence 789999999887653
No 130
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=20.23 E-value=5.5e+02 Score=21.87 Aligned_cols=113 Identities=9% Similarity=-0.011 Sum_probs=54.7
Q ss_pred ECceEEEEEccCCCcCEEEEEECCCcceeE-ecCCCCCCCCCCeEEEECCeEEEEEecCCCCeEEEEEEcCCeeEEEEEE
Q 037345 215 LDRICYWIAWRYNNCQEILSFHMRDEAFHV-IKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSV 293 (357)
Q Consensus 215 ~~G~lyw~~~~~~~~~~i~~fD~~~e~~~~-i~lP~~~~~~~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~~~W~~~~~i 293 (357)
-+|.+.+..... ...+..+|..+.+... +..+.. ........+|+..++... ....+.+|-++..+-.+....
T Consensus 124 ~dg~~l~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 124 PDGKIVVNTSET--TNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CCCCEEEEEecC--CCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeee
Confidence 356555554432 2345667887655432 222111 111112335664433332 356889998876322222222
Q ss_pred ccC---CceeEE--EEEeeCCcEEEE--eeCCeEEEEECCCCcEEEe
Q 037345 294 GPI---LGVLRA--LEFWKNGSFFIE--SNTNQLLLYDPNTRALRDV 333 (357)
Q Consensus 294 ~~~---~~~~~~--~~~~~~~~i~~~--~~~~~~~~yd~~t~~~~~v 333 (357)
... .....+ +.+..++..++. ..+..+..||+++++..+.
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 110 011122 334556665443 2356799999998887653
Done!