BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037346
(1156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 142/226 (62%), Gaps = 5/226 (2%)
Query: 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
+I + + +F+W S P PTL I + G VAV G VG GKSS LS +L + K G
Sbjct: 2 NSITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 416 IIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
+ + G+ AYV Q WIQ+ + ENILFG +++ Y V++AC+L DLE+LP GD+T
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC----WVSSSK 531
IGE+G+NLSGGQKQR+ +AR +Y +ADI+L DDP S VD H G H+F+ + +K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
T I TH + +LP D+I+V+ GKI++ G Y ++L F E +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/208 (19%), Positives = 84/208 (40%), Gaps = 35/208 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G+ G GKS+L+ L ++ GH+ I G ++ +PQ + + R
Sbjct: 38 GQVGCGKSSLLSALLAEMDKVEGHVAIKGS-------------VAYVPQQAWIQNDSLRE 84
Query: 1027 NL---DPLEEH------------ADEQIWEALDKCQLGDEVRKKKG---KLDSQGRXXXX 1068
N+ LEE D +I + D+ ++G++ G + S R
Sbjct: 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144
Query: 1069 XXXXXXXDEATASVDTATDNQIQQTL---RQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
D+ ++VD I + + + + T + + H ++ + ++++++ G
Sbjct: 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204
Query: 1126 LIKEYDSPTKLLENKSSSFAQLVAEYTS 1153
I E S +LL + +FA+ + Y S
Sbjct: 205 KISEMGSYQELLA-RDGAFAEFLRTYAS 231
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 210/910 (23%), Positives = 378/910 (41%), Gaps = 161/910 (17%)
Query: 370 SSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----- 423
S P+ P LR +NL+V G VA+ G+ G GKS+ +S +L G I + G
Sbjct: 427 SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN 486
Query: 424 --------AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQT 474
A V+Q P + + IEENI GKE + RE + + +K ++ LP G T
Sbjct: 487 LEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-DHTGAHLFKFCWVSSSKTV 533
++G+RG LSGGQKQRI IAR L ++ I LLD+ S +D + G + +T
Sbjct: 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTT 606
Query: 534 IYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRG 593
I H++ + ADLI+ K+G++ + G + ++ + +LV A + +DS G
Sbjct: 607 IIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTA-QTFTDAVDSAAEG 665
Query: 594 PVSERKSINK---ENDG----TSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGK 646
S S+ + E++G S ++I+N+ +S ++ G ++ E+E GK
Sbjct: 666 KFSRENSVARQTSEHEGLSRQASEMDDIMNR-----VRSSTIGSITNGPVIDEKEERIGK 720
Query: 647 -----------------------------VGFSVYWKYMTTAYGGVLVPXXXXXXXXXXX 677
S++ T GG + P
Sbjct: 721 DALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMN 780
Query: 678 XXXGS--------NYW--MAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQ-LFNKMHV 726
G+ ++W M A+ + S L+ ++G ++ T+ L NK+
Sbjct: 781 VFAGNPADFLSQGHFWALMFLVLAAAQGI-----CSFLMTFFMGIASESLTRDLRNKLFR 835
Query: 727 CIFRAPMYFFDS--TPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVV 784
+ + FFDS SG+I R++ +V + I + +++ ++ I +
Sbjct: 836 NVLSQHIGFFDSPQNASGKISTRLATDVPNLRTA-----IDFRFSTVITTLVSMVAGIGL 890
Query: 785 MSLVAWQ---VLIVFVPVIA--TFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
WQ ++I +P++A ++ +++ + + S K + E I
Sbjct: 891 AFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAI-----EAIENV 945
Query: 840 TTIRSLDQELRFRDTNMKLID----EYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFL 895
T+++L +E F + + +D E + F + + +L++ + LA +
Sbjct: 946 RTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALI 1005
Query: 896 ISVPNGIIHPYKNLE------------------------------------RKIISVERI 919
I+ P + P + L RKI ++ +
Sbjct: 1006 ITDPP-TMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL 1064
Query: 920 LQCACIPSEPALVIEATKPNNSR---PSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKST 975
+ E + N R P E+ I + L P L L G +G GKST
Sbjct: 1065 ----SLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST 1120
Query: 976 LIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN----LDP- 1030
++ L R ++ G I IDG +I + R++++I+ Q+PT+F+ + N LDP
Sbjct: 1121 VVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPS 1180
Query: 1031 ------LEEHAD-EQIWEALDKCQLGDEVR-KKKGKLDSQG--------RXXXXXXXXXX 1074
+EE A I + + G E R +G S G R
Sbjct: 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240
Query: 1075 XDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134
DEAT+++DT ++ +Q+ L + T + IAHR+ +V+++ + ++++G I E + T
Sbjct: 1241 LDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHT 1300
Query: 1135 KLLENKSSSF 1144
+L+ K + +
Sbjct: 1301 QLMSEKGAYY 1310
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L+ ++ V G +A+ G G GKS+ ++ + G I + G++
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 424 -AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD---LEVLPFGDQTIIGER 479
A V+Q P + I ENI++G + +V EA L + LP G +T +G+R
Sbjct: 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYATH 538
G LSGGQKQRI IAR L ++ I LLD+ S +D + + + +T I H
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274
Query: 539 QVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
++ + AD I V+ +G I + G ++ +++ + +L
Sbjct: 1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKL 1312
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 113/509 (22%), Positives = 210/509 (41%), Gaps = 94/509 (18%)
Query: 717 ATQLFNKMH----VCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIG-AF 771
A Q+ N++ I R + +FD+ SG + ++ +N++ + D IG AF
Sbjct: 164 AEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGD-----KIGMAF 218
Query: 772 AFSMIQLLGIIVVMSLVAWQVLIVFVPV--IATFIWYQQYYITSTRELSRLIGVCKAPVI 829
+ + G IV + +WQ+ +V + V I + ST + + KA +
Sbjct: 219 QYLSQFITGFIVAFTH-SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKV 277
Query: 830 QQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRP--KFHIAGAMEWLRFCID---MLS 884
+ ETIS T+ SL+ LR+ ++ YS + AG ++ L I M +
Sbjct: 278 VE--ETISSIRTVVSLNG-LRYE------LERYSTAVEEAKKAGVLKGLFLGISFGAMQA 328
Query: 885 SITFAFSLAFLISVPNGIIHPYK-NLERKIISVERIL--QCACIPSEPALVIEAT----- 936
S +F+LAF I V G +H N + + ++ A + P L + T
Sbjct: 329 SNFISFALAFYIGV--GWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAA 386
Query: 937 ---------KP---NNSRPSH------GEVNIRHLQVRYA--PNLPLV------------ 964
KP ++S+ G++ + ++ Y P++P++
Sbjct: 387 SGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT 446
Query: 965 --LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L G +G GKST+I L R + G I IDG D+ I L LR ++++ Q+P +F
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506
Query: 1023 TTRSNLDPLEEHADEQIWEALDKCQL------------------GDEVRKKKGKLDSQ-- 1062
T N+ +E + E + C++ GD + G +
Sbjct: 507 TIEENISLGKEGITRE--EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564
Query: 1063 -GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLL 1121
R DEAT+++D ++ +QQ L + T + IAHR++++ ++ +++
Sbjct: 565 IARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIIS 624
Query: 1122 LNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150
+G + E L+ + + + A+
Sbjct: 625 CKNGQVVEVGDHRALMAQQGLYYDLVTAQ 653
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 150/265 (56%), Gaps = 11/265 (4%)
Query: 344 DVLEKMPRGNSDT--AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + + + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+FG D RY+ V++AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF------ 253
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 254 -SSKLMGYDTFDQFTEERRSSILTE 277
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 147/265 (55%), Gaps = 11/265 (4%)
Query: 344 DVLEKMPRGNSDTAIEIIDG--SFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHXSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+FG D RY+ V++AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF------ 253
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R I E
Sbjct: 254 -SSKLMGYDTFDQFTEERRXXILTE 277
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 166 bits (419), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 149/265 (56%), Gaps = 11/265 (4%)
Query: 344 DVLEKMPRGNSDT--AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + + + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+ G D RY+ V++AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF------ 253
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 254 -SSKLMGYDTFDQFTEERRSSILTE 277
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 935 ATKPNNSRPSH----GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990
++ NN SH G ++++ + L + G TGSGK++L+ + +E++ G
Sbjct: 35 SSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI 94
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD 1050
I G R+S Q + GT + N+ + + + + CQL
Sbjct: 95 IKHSG-------------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQ 141
Query: 1051 EVRK 1054
++ K
Sbjct: 142 DITK 145
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 149/265 (56%), Gaps = 11/265 (4%)
Query: 344 DVLEKMPRGNSDT--AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + + + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+ G D RY+ V++AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF------ 253
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 254 -SSKLMGYDTFDQFTEERRSSILTE 277
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 935 ATKPNNSRPSH----GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990
++ NN SH G ++++ + L + G TGSGK++L+ + +E++ G
Sbjct: 35 SSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI 94
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD 1050
I G R+S Q + GT + N+ + + + + CQL
Sbjct: 95 IKHSG-------------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQ 141
Query: 1051 EVRK 1054
++ K
Sbjct: 142 DITK 145
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 149/265 (56%), Gaps = 12/265 (4%)
Query: 344 DVLEKMPRGNSDT--AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + + + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 20 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+ G D RY+ V++AC L
Sbjct: 80 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQL 138
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 139 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF------ 252
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 253 -SSKLMGYDTFDQFTEERRSSILTE 276
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 935 ATKPNNSRPSH----GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990
++ NN SH G ++++ + L + G TGSGK++L+ + +E++ G
Sbjct: 35 SSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI 94
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDK-CQLG 1049
I G R+S Q + GT + N+ + DE ++++ K CQL
Sbjct: 95 IKHSG-------------RVSFCSQFSWIMPGTIKENIIGVS--YDEYRYKSVVKACQLQ 139
Query: 1050 DEVRK 1054
++ K
Sbjct: 140 QDITK 144
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 145/262 (55%), Gaps = 11/262 (4%)
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSW-DFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++ EK + N++ D S S+ +FS P L++IN K+ G +AV G+ G+GK+S
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L I+G + G I+ G ++ +Q WI G I+ENI+ G D RY V++AC L
Sbjct: 80 LLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D ++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 140 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 199
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ +G G +S++ N DF
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDF------ 253
Query: 580 HKQALSGLDSIDRGPVSERKSI 601
L G DS D+ R SI
Sbjct: 254 -SSKLMGCDSFDQFSAERRNSI 274
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 159 bits (402), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 146/262 (55%), Gaps = 12/262 (4%)
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSW-DFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++ EK + N++ D S S+ +FS P L++IN K+ G +AV G+ G+GK+S
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L I+G + G I+ G ++ +Q+ WI G I+ENI+ G D RY V++AC L
Sbjct: 80 LLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQL 138
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D ++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 139 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ +G G +S++ N DF
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF------ 252
Query: 580 HKQALSGLDSIDRGPVSERKSI 601
L G DS D+ R SI
Sbjct: 253 -SSKLMGCDSFDQFSAERRNSI 273
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 145/262 (55%), Gaps = 12/262 (4%)
Query: 344 DVLEKMPRGNSDTAIEIIDGS-FSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++ EK + N++ D S F +FS P L++IN K+ G +AV G+ G+GK+S
Sbjct: 20 ELFEKAKQNNNNRKTSNGDDSLFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L I+G + G I+ G ++ +Q+ WI G I+ENI+ G D RY V++AC L
Sbjct: 80 LLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQL 138
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D ++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 139 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ +G G +S++ N DF
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDF------ 252
Query: 580 HKQALSGLDSIDRGPVSERKSI 601
L G DS D+ R SI
Sbjct: 253 -SSKLMGCDSFDQFSAERRNSI 273
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 9/230 (3%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
P L++IN K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 434 SGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493
G I+ENI+FG D RY V++AC L++D+ D ++GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLILV 551
AR +Y+DAD++LLD PF +D T +F+ C + ++KT I T ++E L AD IL+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 552 IKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSI 601
+ +G G +S++ N DF L G DS D+ R SI
Sbjct: 232 LHEGSSYFYGTFSELQNLQPDF-------SSKLMGCDSFDQFSAERRNSI 274
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 2/203 (0%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
P L++IN K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q WI
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 92
Query: 433 QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
G I+ENI+FG D RY V++AC L++D+ D ++GE GI LSGGQ+ RI
Sbjct: 93 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 152
Query: 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLIL 550
+AR +Y+DAD++LLD PF +D T +F+ C + ++KT I T ++E L AD IL
Sbjct: 153 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 212
Query: 551 VIKDGKITQAGKYSDILNSGTDF 573
++ +G G +S++ N DF
Sbjct: 213 ILHEGSSYFYGTFSELQNLQPDF 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 2/203 (0%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
P L++IN K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q WI
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 433 QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
G I+ENI+FG D RY V++AC L++D+ D ++GE GI LSGGQ+ RI
Sbjct: 81 MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140
Query: 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLIL 550
+AR +Y+DAD++LLD PF +D T +F+ C + ++KT I T ++E L AD IL
Sbjct: 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 200
Query: 551 VIKDGKITQAGKYSDILNSGTDF 573
++ +G G +S++ N DF
Sbjct: 201 ILHEGSSYFYGTFSELQNLQPDF 223
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 149 bits (377), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 129/230 (56%), Gaps = 10/230 (4%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
P L++IN K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 434 SGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493
G I+ENI+ G D RY V++AC L++D+ D ++GE GI LS GQ+ +I +
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLILV 551
AR +Y+DAD++LLD PF +D T +F+ C + ++KT I T ++E L AD IL+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 552 IKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSI 601
+ +G G +S++ N DF L G DS D+ R SI
Sbjct: 231 LHEGSSYFYGTFSELQNLQPDF-------SSKLMGCDSFDQFSAERRNSI 273
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 3/203 (1%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
P L++IN K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q WI
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI 80
Query: 433 QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
G I+ENI+ G D RY V++AC L++D+ D ++GE GI LSGGQ+ RI
Sbjct: 81 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 139
Query: 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLIL 550
+AR +Y+DAD++LLD PF +D T +F+ C + ++KT I T ++E L AD IL
Sbjct: 140 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 199
Query: 551 VIKDGKITQAGKYSDILNSGTDF 573
++ +G G +S++ N DF
Sbjct: 200 ILHEGSSYFYGTFSELQNLQPDF 222
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 34/242 (14%)
Query: 936 TKPNNSRPSHGEVNIRHLQVRY---------------APNLPLVLRGRTGSGKSTLIQTL 980
K ++ PS G++ ++ L +Y +P + L GRTGSGKSTL+
Sbjct: 8 VKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
Query: 981 FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040
R++ +T G I IDG I L R +IPQ +F GT R NLDP H+D++IW
Sbjct: 68 LRLL-NTEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126
Query: 1041 EALDKCQLGDEVRKKKGKLD----------SQG--------RXXXXXXXXXXXDEATASV 1082
+ D+ L + + GKLD S G R DE +A +
Sbjct: 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186
Query: 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSS 1142
D T I++TL+Q F+DCTV+ RI ++L+ L++ +++YDS +L +
Sbjct: 187 DPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD 246
Query: 1143 SF 1144
F
Sbjct: 247 RF 248
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------- 422
N L NI+ + G RV + G GSGKS+ LS L + E G I++ G
Sbjct: 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQW 92
Query: 423 -KAY--VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
KA+ + Q +I SG +N+ + +V + L+ +E P ++ +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-------HTGAHLFKFCWVSSSKT 532
G LS G KQ + +AR + A I LLD+P + +D T F C T
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC------T 206
Query: 533 VIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
VI ++E + D LVI++ K+ Q Y IL
Sbjct: 207 VILCEARIEAMLECDQFLVIEENKVRQ---YDSIL 238
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/493 (23%), Positives = 209/493 (42%), Gaps = 66/493 (13%)
Query: 714 YKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPY--DIGAF 771
++ +LF K+ R P+ FFD TP G I++RV +V + + I + I
Sbjct: 110 FRLRKELFEKLQ----RVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTL 165
Query: 772 AFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQ---YYITSTRELSRLIGVCKA-- 826
A ++I + + V++SLV IV + V+ T I Q Y+ + R L +L G+ +
Sbjct: 166 AGAVIMMFRVNVILSLVTLS--IVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDI 223
Query: 827 ---PVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFH---------IAGAME 874
VI+ F+ +++ LR T ++ P + I+G
Sbjct: 224 SGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGG 283
Query: 875 WLRFCIDMLSSITFAFSLAF---LISVPNGIIHPYKNLERKIISVERILQCACIPSEPAL 931
WL D+++ T A + + N + + + ++ + S ERI + + E
Sbjct: 284 WLALK-DIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK-- 340
Query: 932 VIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLV--------------LRGRTGSGKSTLI 977
+ R GE+ +++ Y P++ L G TGSGK+T++
Sbjct: 341 --DDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV 398
Query: 978 QTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-D 1036
L R + G IL+DG DI I LR+ + I+ QD +F T + NL A D
Sbjct: 399 NLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD 458
Query: 1037 EQIWEALDKCQL------------------GDEVRKKKGKLDSQGRXXXXXXXXXXXDEA 1078
E+I EA G+++ + + +L + R DEA
Sbjct: 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518
Query: 1079 TASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
T++VDT T+ IQ + + T + IAHR+ ++ ++ ++++L G I E +L++
Sbjct: 519 TSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
Query: 1139 NKSSSFAQLVAEY 1151
+ + ++Y
Sbjct: 579 KRGFYYELFTSQY 591
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 145/320 (45%), Gaps = 28/320 (8%)
Query: 277 FVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFL 336
F + FG + L + G I + + + P+ L +M+ A +RI L
Sbjct: 275 FALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEIL 334
Query: 337 CLEGLQTD---VLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCG 393
LE + D V + RG IE + FS+D P L++I + G +VA+ G
Sbjct: 335 DLEEEKDDPDAVELREVRGE----IEFKNVWFSYD--KKKPVLKDITFHIKPGQKVALVG 388
Query: 394 TVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGKIEEN 440
GSGK++ ++ ++ + G I + G V Q + S ++EN
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448
Query: 441 ILFGKEMDRERYERVLEACSLKKD---LEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497
+ +G + E + EA L ++ LP G +T++ + G +LS GQ+Q + I R
Sbjct: 449 LKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAF 506
Query: 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVEFLPAADLILVIKDGK 556
+ I +LD+ S VD T + W + KT I H++ + ADLI+V++DG+
Sbjct: 507 LANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE 566
Query: 557 ITQAGKYSDILNSGTDFMEL 576
I + GK+ +++ + EL
Sbjct: 567 IVEMGKHDELIQKRGFYYEL 586
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 20/231 (8%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+E + F++ P ++ +L + G A+ G GSGKS+ LS +L SG
Sbjct: 341 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKE----MDRERYERVLEAC 459
I L G V+Q P + S I ENI +G + + E +RV E
Sbjct: 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+ + P G T++GE+G+ LSGGQKQRI IAR L ++ I LLD+ S +D
Sbjct: 461 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-E 519
Query: 520 HLFKFCW--VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+L + + +TV+ H++ + A+++ V+ GKIT+ GK+ ++L+
Sbjct: 520 YLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/514 (22%), Positives = 215/514 (41%), Gaps = 77/514 (14%)
Query: 702 ASTLIIVYV--GAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSA 759
A+ I VY+ +G + +L + I R + FFD T +G ++NR+S + +S
Sbjct: 77 AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
Query: 760 ADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSR 819
+ ++ + A A + + + + V +A VL V PV + Y +Y R+L++
Sbjct: 137 TE-NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTK 191
Query: 820 LIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDE---------YSRPKFHIA 870
+ A Q E I T+R+ +E+ + +D ++R F A
Sbjct: 192 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251
Query: 871 GAMEWLRFCIDML------------------SSITFAFSLAFLISVPNGIIHPYKNLERK 912
+ + +L S + +AF + I G+ Y L +
Sbjct: 252 TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISI---GGLSSFYSELMKG 308
Query: 913 IISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYA--PNLPL------- 963
+ + R+ + + EP L N + G + +++ Y P +P+
Sbjct: 309 LGAGGRLWEL--LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLS 366
Query: 964 -------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016
L G +GSGKST++ L R+ + +G I +DG DI + LR+++ + Q+
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 1017 PTMFEGTTRSNL-----DPLEEHADE--QIWEALDKC-------QLGDEVRKKKGKLDSQ 1062
P +F + N+ DP A+E ++ E + Q + V +KG L S
Sbjct: 427 PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486
Query: 1063 G--------RXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114
G R DEAT+++D + +Q+ L + TV+ IAHR++++
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK 546
Query: 1115 DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
++ MV +L+ G I EY +LL + + +L+
Sbjct: 547 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 580
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 20/231 (8%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+E + F++ P ++ +L + G A+ G GSGKS+ LS +L SG
Sbjct: 372 ALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 431
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKE----MDRERYERVLEAC 459
I L G V+Q P + S I ENI +G + + E +RV E
Sbjct: 432 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+ + P G T++GE+G+ LSGGQKQRI IAR L ++ I LLD+ S +D
Sbjct: 492 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN-E 550
Query: 520 HLFKFCW--VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+L + + +TV+ H + + A+++ V+ GKIT+ GK+ ++L+
Sbjct: 551 YLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/514 (22%), Positives = 214/514 (41%), Gaps = 77/514 (14%)
Query: 702 ASTLIIVYV--GAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSA 759
A+ I VY+ +G + +L + I R + FFD T +G ++NR+S + +S
Sbjct: 108 AANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 167
Query: 760 ADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSR 819
+ ++ + A A + + + + V +A VL V PV + Y +Y R+L++
Sbjct: 168 TE-NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTK 222
Query: 820 LIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDE---------YSRPKFHIA 870
+ A Q E I T+R+ +E+ + +D ++R F A
Sbjct: 223 VTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 282
Query: 871 GAMEWLRFCIDML------------------SSITFAFSLAFLISVPNGIIHPYKNLERK 912
+ + +L S + +AF + I G+ Y L +
Sbjct: 283 TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISI---GGLSSFYSELMKG 339
Query: 913 IISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYA--PNLPL------- 963
+ + R+ + + EP L N + G + +++ Y P +P+
Sbjct: 340 LGAGGRLWEL--LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLS 397
Query: 964 -------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016
L G +GSGKST++ L R+ + +G I +DG DI + LR+++ + Q+
Sbjct: 398 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 457
Query: 1017 PTMFEGTTRSNL-----DPLEEHADE--QIWEALDKC-------QLGDEVRKKKGKLDSQ 1062
P +F + N+ DP A+E ++ E + Q + V +KG L S
Sbjct: 458 PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 517
Query: 1063 G--------RXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114
G R DEAT+++D + +Q+ L + TV+ IAH ++++
Sbjct: 518 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIK 577
Query: 1115 DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
++ MV +L+ G I EY +LL + + +L+
Sbjct: 578 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLM 611
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 17/235 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+++ D +F++ P L +++ + G VA+ G GSGKS+ + +SG I
Sbjct: 342 VDVKDVTFTYQ-GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMD--RERYERVLEACSLK 462
L G A V+Q+ + + I NI + E + RE+ E+
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM 460
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL- 521
+ +E +P G T+IGE G +LSGGQ+QR+ IAR L +DA + +LD+ S +D + +
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 522 FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
+ +KTV+ H++ + AD ILV+ +G+I + G+++D+L + +L
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 120/492 (24%), Positives = 207/492 (42%), Gaps = 82/492 (16%)
Query: 719 QLFNK-MHVCIFRAPMYFFDSTPSGRILNRV---SENVKWADQSAADMDIPYDIGAFAFS 774
+LFN MH+ P+ FFD +G +L+R+ SE V A S A + I + GA
Sbjct: 103 RLFNHFMHM-----PVRFFDQESTGGLLSRITYDSEQVAGAT-SRALVSIVRE-GA---- 151
Query: 775 MIQLLGIIVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQ 831
++G++ +M +WQ VLIV PV+A I + R++SR + V
Sbjct: 152 --SIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI---SFVSKRFRKISRNMQTAMGHVTSS 206
Query: 832 FSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFS 891
+ + G + S + R K+ + + + A I M++S+ F+
Sbjct: 207 AEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLAL-FA 265
Query: 892 LAFLISVPN------------------GIIHPYKNLERKIISVERILQCACIPSEPALVI 933
+ FL SV + G++ P K L +R + AC + +
Sbjct: 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM-AACQTLFGLMDL 324
Query: 934 EATKPNNSRPS---HGEVNIRHLQVRY----APNLPLV-----------LRGRTGSGKST 975
E + N + +GEV+++ + Y P L V L GR+GSGKST
Sbjct: 325 ETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKST 384
Query: 976 LIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--E 1033
+ R + +G I +DG D+ L +LR +++ Q+ +F T +N+ E
Sbjct: 385 IANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE 444
Query: 1034 HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRXXXXXXXXXXX 1075
+ EQI +A + + + LD+ R
Sbjct: 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504
Query: 1076 DEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135
DEAT+++DT ++ IQ L + + TV+ IAHR++++ + +L+++ G I E
Sbjct: 505 DEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD 564
Query: 1136 LLENKSSSFAQL 1147
LL + ++AQL
Sbjct: 565 LLA-QDGAYAQL 575
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 151/324 (46%), Gaps = 31/324 (9%)
Query: 272 WGAPTFVSVVT---FGSCILLGI--------PLESGMILSALTTFKILQEPIYYLPESIS 320
W A +F ++ T G I++G+ + G + + + ++L P+ L S +
Sbjct: 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 321 MMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNIN 380
+ Q+ +DR+ + + + + P I+I SF ++ + P L++IN
Sbjct: 303 TLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDIN 361
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVA 427
L + G VA G G GKS+ ++ I SG I + G V
Sbjct: 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQ 421
Query: 428 QSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEV---LPFGDQTIIGERGINLS 484
Q + S ++ENIL G+ + E V+EA + + LP G T +GERG+ LS
Sbjct: 422 QDNILFSDTVKENILLGRPTATD--EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFL 543
GGQKQR+ IAR + I +LD+ S +D + + + + V S +T + H++ +
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI 539
Query: 544 PAADLILVIKDGKITQAGKYSDIL 567
AD I+VI++G I + G + +++
Sbjct: 540 THADKIVVIENGHIVETGTHRELI 563
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
G ++I H+ +Y N +L+ G +G GKSTLI + R + T+G
Sbjct: 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQL 1048
ILIDG +I LR ++ ++ QD +F T + N+ A DE++ EA
Sbjct: 397 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 456
Query: 1049 GD-----------EVRKKKGKLD-------SQGRXXXXXXXXXXXDEATASVDTATDNQI 1090
D EV ++ KL S R DEAT+++D +++ I
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSS 1142
Q+ L D T + +AHR++++ + ++++ +G I E + +L+ + +
Sbjct: 517 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 369 FSSPN---PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL-------------GGVPK 412
F+ P P LRNINLK+ G VA+ G GSGKS+ S I G +
Sbjct: 349 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR 408
Query: 413 ESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPF 470
E + L A V+Q+ + + + NI + + E RE+ E + +
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-FKFCWVSS 529
G TIIGE G+ LSGGQ+QRI IAR L +D+ I +LD+ S +D + + +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
++T + H++ + AD I+V++DG I + G +S++L
Sbjct: 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 204/474 (43%), Gaps = 68/474 (14%)
Query: 732 PMYFFDSTPSGRILNRVS-ENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAW 790
P+ FFD +G +L+R++ ++ + A S+ + GA ++G+ ++M +W
Sbjct: 112 PVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA------SIIGLFIMMFYYSW 165
Query: 791 Q---VLIVFVPVIATFIWY-QQYYITSTRELSRLIGVCKAPVIQQFSE----TISGSTTI 842
Q +L+V P+++ I + + + ++ + +G Q I G +
Sbjct: 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV 225
Query: 843 RS-----LDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCI------DMLSSITFAFS 891
+ + ++R + M S P + ++ L F + ++ S+T A +
Sbjct: 226 ETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA-LAFVLYAASFPSVMDSLT-AGT 283
Query: 892 LAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSR---PSHGEV 948
+ + S ++ P K+L +R + AC L E K R + G++
Sbjct: 284 ITVVFSSMIALMRPLKSLTNVNAQFQRGM-AACQTLFAILDSEQEKDEGKRVIDRATGDL 342
Query: 949 NIRHLQVRY----APNL-----------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993
R++ Y P L + L GR+GSGKST+ + R + GHIL+
Sbjct: 343 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402
Query: 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQIWEALDKCQLGDE 1051
DG D+ L LR +++++ Q+ +F T +N+ EE++ EQI EA D
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF 462
Query: 1052 VRKKKGKLDS------------------QGRXXXXXXXXXXXDEATASVDTATDNQIQQT 1093
+ K LD+ R DEAT+++DT ++ IQ
Sbjct: 463 INKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA 522
Query: 1094 LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
L + + T + IAHR++++ + ++++ G+I E + ++LL + +AQL
Sbjct: 523 LDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQL 575
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 19/218 (8%)
Query: 369 FSSPN---PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL-------------GGVPK 412
F+ P P LRNINLK+ G VA+ G GSGKS+ S I G +
Sbjct: 349 FTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLR 408
Query: 413 ESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPF 470
E + L A V+Q+ + + + NI + + + RE+ E + +
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-FKFCWVSS 529
G T+IGE G+ LSGGQ+QRI IAR L +D+ I +LD+ S +D + + +
Sbjct: 469 GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
++T + H++ + AD I+V++DG I + G ++D+L
Sbjct: 529 NRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL 566
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 111/477 (23%), Positives = 204/477 (42%), Gaps = 74/477 (15%)
Query: 732 PMYFFDSTPSGRILNRVS-ENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAW 790
P+ FFD +G +L+R++ ++ + A S+ + GA ++G+ ++M +W
Sbjct: 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA------SIIGLFIMMFYYSW 165
Query: 791 Q---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLD- 846
Q +LIV P+++ I + R +S+ + V + + G +
Sbjct: 166 QLSIILIVLAPIVSIAI---RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG 222
Query: 847 QEL----------RFRDTNMKLID--EYSRPKFHIAGAMEWLRFCI------DMLSSITF 888
QE+ R R MK++ S P + ++ L F + ++ S+T
Sbjct: 223 QEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLA-LAFVLYAASFPSVMDSLT- 280
Query: 889 AFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSR---PSH 945
A ++ + S ++ P K+L +R + AC L E K R +
Sbjct: 281 AGTITVVFSSMIALMRPLKSLTNVNAQFQRGM-AACQTLFTILDSEQEKDEGKRVIERAT 339
Query: 946 GEVNIRHLQVRY----APNL-----------PLVLRGRTGSGKSTLIQTLFRIVESTAGH 990
G+V R++ Y P L + L GR+GSGKST+ + R + G
Sbjct: 340 GDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGE 399
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQIWEALDKCQL 1048
IL+DG D+ L LR +++++ Q+ +F T +N+ E+++ EQI EA
Sbjct: 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYA 459
Query: 1049 GDEVRKKKGKLDSQ------------------GRXXXXXXXXXXXDEATASVDTATDNQI 1090
D + K LD+ R DEAT+++DT ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
Q L + + T + IAHR++++ + ++++ G+I E + LLE++ +AQL
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQL 575
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 21/228 (9%)
Query: 367 WDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421
+ ++ TL++++ V G +A+ G G+GKS+ L + SG IR+ G
Sbjct: 61 FSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ 120
Query: 422 -TKA-------YVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGD 472
T+A V Q + + I +NI +G+ + E +A + + P G
Sbjct: 121 VTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY 180
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----GAHLFKFCWVS 528
+T +GERG+ LSGG+KQR+ IAR + + I LLD+ S +D A L K C
Sbjct: 181 RTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--- 237
Query: 529 SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
+++T I H++ + AD ILVIKDG I + G++ +L+ G + ++
Sbjct: 238 ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 19/198 (9%)
Query: 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018
P L L G +G+GKST+++ LFR + ++G I IDG+DIS + LR+ + ++PQD
Sbjct: 79 PGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTV 138
Query: 1019 MFEGTTRSNL---------DPLEEHADEQ-IWEALD------KCQLGDEVRKKKGKLDSQ 1062
+F T N+ D +E A I +A+ + Q+G+ K G +
Sbjct: 139 LFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQR 198
Query: 1063 ---GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMV 1119
R DEAT+++DT+ + IQ +L + ++ T + +AHR+++V+++ +
Sbjct: 199 VAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQI 258
Query: 1120 LLLNHGLIKEYDSPTKLL 1137
L++ G I E LL
Sbjct: 259 LVIKDGCIVERGRHEALL 276
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE D +FS+ + + TL++IN + G A+ G GSGKS+ ++ +L G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDI 76
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKK 463
++ G V Q + + I+ NIL+GK + E + ++ L
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+E LP TI+G +G+ LSGG++QRI IAR L +D I + D+ S +D T +LF+
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQ 195
Query: 524 FCW--VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
+ ++T+I H++ + +A+ I+++ GKI + G + D+L ++ E+
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
L G TGSGKST+ + L+R ++ G I I GK+++ + +R+ + I+PQD +F T
Sbjct: 50 ALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNET 108
Query: 1024 TRSN-LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GR 1064
+ N L + DE++ +A QL D + K D+ R
Sbjct: 109 IKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIAR 168
Query: 1065 XXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124
DEAT+S+D+ T+ Q+ + + T++ IAHR++++ + ++LLN
Sbjct: 169 CLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNK 228
Query: 1125 GLIKEYDSPTKLLE 1138
G I E + LL+
Sbjct: 229 GKIVEKGTHKDLLK 242
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 169/393 (43%), Gaps = 47/393 (11%)
Query: 220 KFMETKDRRIKATSEILRNMRILKLQGWELKKNETAWLKKSVYTEAMISFF---CWGAPT 276
K E+ D + E L +R+++ E +NE ++IS F + P
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252
Query: 277 FVSVVT--------FGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVP 328
F+ +V FG ++ +E G I++ + + + ++ +++A
Sbjct: 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312
Query: 329 LDRIASFLCLEGLQTDVLEKMPRGNSDTAIEI--IDGSFSWD------FSSPNPTLRNIN 380
R+ L EK +D A+ + ++GS S++ F + +P L +N
Sbjct: 313 AKRVLEVLN---------EKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVN 363
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR-------------LCGTKAYVA 427
V G VAV G GSGKS+ ++ I + E G + L G + V
Sbjct: 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVP 423
Query: 428 QSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK--DLEV-LPFGDQTIIGERGINLS 484
Q + SG I+EN+ +G+E + + ++EA + + D + LP G + + G N S
Sbjct: 424 QETVLFSGTIKENLKWGREDATD--DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYATHQVEFL 543
GGQKQR+ IAR L + + +LDD S VD T + + T T ++
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA 541
Query: 544 PAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
AD ILV+ +GK+ G + ++L + E+
Sbjct: 542 LLADKILVLHEGKVAGFGTHKELLEHCKPYREI 574
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 102/425 (24%), Positives = 181/425 (42%), Gaps = 76/425 (17%)
Query: 780 GIIVVMSL-VAWQVLIVFV--PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETI 836
GI++ +S+ V +++F+ P++ F+W + L R I V + E +
Sbjct: 154 GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTK----KGNPLFRKIQESTDEVNRVVRENL 209
Query: 837 SGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFL- 895
G +R+ +E + + N + +E R I A + F + + I +A L
Sbjct: 210 LGVRVVRAFRRE-EYENENFRKANESLRRS--IISAFSLIVFALPLFIFIVNMGMIAVLW 266
Query: 896 ---ISVPN-----GIIHPYKNLERKII------------------SVERILQCACIPSEP 929
+ V N G I Y N +I+ S +R+L+ + +P
Sbjct: 267 FGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEV--LNEKP 324
Query: 930 ALVIEATKPNNSRPS-HGEVNIRHLQVRYAPNLPLVLRG---------------RTGSGK 973
A IE + P+ G V+ +++ RY N VL G TGSGK
Sbjct: 325 A--IEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGK 382
Query: 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLE 1032
STL+ + R+++ G + +D D+ + L DLR +S +PQ+ +F GT + NL E
Sbjct: 383 STLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE 442
Query: 1033 EHADEQIWEALDKCQLGDEV---------RKKKGKLDSQG---------RXXXXXXXXXX 1074
+ D++I EA Q+ D + R ++G + G R
Sbjct: 443 DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI 502
Query: 1075 XDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134
D+ T+SVD T+ +I L+++ CT I +I + L + +L+L+ G + + +
Sbjct: 503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562
Query: 1135 KLLEN 1139
+LLE+
Sbjct: 563 ELLEH 567
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 48/352 (13%)
Query: 262 YTEAMISF-----FCWGA-------PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQ 309
+T+AM+ F F +GA TF +V+ S I+ G M + +++F
Sbjct: 940 FTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG-----AMAVGQVSSFA--- 991
Query: 310 EPIYYLPE-SISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWD 368
P Y S S +I+ I S+ +GL+ ++LE GN ++ F++
Sbjct: 992 -PDYAKATVSASHIIRIIEKTPEIDSY-STQGLKPNMLE----GN----VQFSGVVFNYP 1041
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----- 423
P L+ ++L+V G +A+ G+ G GKS+ + + +G + L G +
Sbjct: 1042 TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
Query: 424 --------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC---SLKKDLEVLPFGD 472
V+Q P + I ENI +G YE ++ A ++ + ++ LP
Sbjct: 1102 VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSK 531
T +G++G LSGGQKQRI IAR L + I LLD+ S +D + + + +
Sbjct: 1162 NTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGR 1221
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQA 583
T I H++ + ADLI+VI++GK+ + G + +L + +V A
Sbjct: 1222 TCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL-------GGVPKESGII 417
FS+ L+ +NLKV G VA+ G G GKS+ + + G V + I
Sbjct: 395 FSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDI 454
Query: 418 RLCGTK------AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPF 470
R + V+Q P + + I ENI +G+E + + E+ ++ + + LP
Sbjct: 455 RTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPH 514
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-FKFCWVSS 529
T++GERG LSGGQKQRI IAR L ++ I LLD+ S +D + A +
Sbjct: 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE 574
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+T I H++ + AD+I G I + G + +++ + +LV
Sbjct: 575 GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/445 (22%), Positives = 190/445 (42%), Gaps = 74/445 (16%)
Query: 770 AFAFSMIQLLGIIVVMSLV-AWQV---LIVFVPVIATFIWYQQYYIT--STRELSRLIGV 823
A F I LG +++SL+ WQ+ L+ VP+IA + ++ + ++ L G
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 824 CKAPVIQQFSETISGSTTIRSLDQELRFRDT---NMKLIDEYSRPKFHIAG-------AM 873
K +E I T+ SL +E +F ++++ + K H+ G AM
Sbjct: 890 GKIA-----TEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM 944
Query: 874 EWLRFC-------------IDMLSSITFAFSLAFLISVPNGIIHPYK-NLERKIISVERI 919
+ + + ++ FS ++ G + + + + +S I
Sbjct: 945 MYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI 1004
Query: 920 LQC-ACIPSEPALVIEATKPNN---------------SRPSHGEVNIRHLQVRYAPNLPL 963
++ P + + KPN +RPS + L+V+ L L
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
V G +G GKST++Q L R + AG + +DGK+I + + LR +L I+ Q+P +F+ +
Sbjct: 1065 V--GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1024 TRSNL---DPLEEHADEQIWEALDKCQ-------LGDEVRKKKGKLDSQ----------- 1062
N+ D + E+I A + L D+ + G +Q
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1063 GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL 1122
R DEAT+++DT ++ +Q+ L + T + IAHR++++ ++ +++++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1123 NHGLIKEYDSPTKLLENKSSSFAQL 1147
+G +KE+ + +LL K F+ +
Sbjct: 1243 QNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/516 (21%), Positives = 207/516 (40%), Gaps = 82/516 (15%)
Query: 699 AVGASTLIIVYVGAGY--KTATQLFNKMHVCIFRAPMY----FFDSTPSGRILNRVSENV 752
+GA LI+ Y+ + A + +K+ F A M +FD G + R++++V
Sbjct: 116 GIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDV 175
Query: 753 KWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPV-----IATFIWYQ 807
++ D IG F +M G ++ W++ +V + + ++ IW +
Sbjct: 176 SKINEGIGD-----KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAK 230
Query: 808 QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSL---DQELRFRDTNMKLIDEYSR 864
I S+ L KA + + E ++ T+ + +EL + N++
Sbjct: 231 ---ILSSFTDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285
Query: 865 PKFHIA----GAMEWLRFCIDMLS-----------------SITFAFSL---AFLISVPN 900
K A GA L + L+ +T FS+ AF + +
Sbjct: 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQAS 345
Query: 901 GIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNN------------SRPSHGEV 948
I + N V +I+ PS + KP+N S PS EV
Sbjct: 346 PNIEAFANARGAAYEVFKIIDNK--PSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403
Query: 949 NI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR 1007
I + L ++ + L G +G GKST +Q + R+ + G + IDG+DI I + LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 1008 TRLSIIPQDPTMFEGTTRSNLD-PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ---- 1062
+ ++ Q+P +F T N+ E+ ++I +A+ + D + K + D+
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523
Query: 1063 --------------GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
R DEAT+++DT ++ +Q L + T + IAH
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Query: 1109 RITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144
R+++V ++ ++ + G+I E + +L+ K F
Sbjct: 584 RLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 158/351 (45%), Gaps = 46/351 (13%)
Query: 262 YTEAMISF-----FCWGA-------PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQ 309
+T+AM+ F F +GA TF +V+ S I+ G M + +++F
Sbjct: 940 FTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFG-----AMAVGQVSSFAPDY 994
Query: 310 EPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDF 369
I +I+ +D ++ +GL+ ++LE GN ++ F++
Sbjct: 995 AKATVSASHIIRIIEKTPEIDSYST----QGLKPNMLE----GN----VQFSGVVFNYPT 1042
Query: 370 SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------ 423
P L+ ++L+V G +A+ G+ G GKS+ + + +G + L G +
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 424 -------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC---SLKKDLEVLPFGDQ 473
V+Q P + I ENI +G YE ++ A ++ + ++ LP
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN 1162
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKT 532
T +G++G LSGGQKQRI IAR L + I LLD+ S +D + + + +T
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRT 1222
Query: 533 VIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQA 583
I H++ + ADLI+VI++GK+ + G + +L + +V A
Sbjct: 1223 CIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 112/240 (46%), Gaps = 15/240 (6%)
Query: 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL----- 407
N +E + FS+ L+ +NLKV G VA+ G G GKS+ + +
Sbjct: 383 NIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 408 --GGVPKESGIIRLCGTK------AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEA 458
G V + IR + V+Q P + + I ENI +G+E + + E+ ++
Sbjct: 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKE 502
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+ + LP T++GERG LSGGQKQRI IAR L ++ I LLD+ S +D +
Sbjct: 503 ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 519 AHL-FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
A + +T I H++ + AD+I G I + G + +++ + +LV
Sbjct: 563 AVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 98/445 (22%), Positives = 190/445 (42%), Gaps = 74/445 (16%)
Query: 770 AFAFSMIQLLGIIVVMSLV-AWQV---LIVFVPVIATFIWYQQYYIT--STRELSRLIGV 823
A F I LG +++SL+ WQ+ L+ VP+IA + ++ + ++ L G
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 824 CKAPVIQQFSETISGSTTIRSLDQELRFRDT---NMKLIDEYSRPKFHIAG-------AM 873
K +E I T+ SL +E +F ++++ + K H+ G AM
Sbjct: 890 GKIA-----TEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM 944
Query: 874 EWLRFC-------------IDMLSSITFAFSLAFLISVPNGIIHPYK-NLERKIISVERI 919
+ + + ++ FS ++ G + + + + +S I
Sbjct: 945 MYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI 1004
Query: 920 LQC-ACIPSEPALVIEATKPNN---------------SRPSHGEVNIRHLQVRYAPNLPL 963
++ P + + KPN +RPS + L+V+ L L
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
V G +G GKST++Q L R + AG + +DGK+I + + LR +L I+ Q+P +F+ +
Sbjct: 1065 V--GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1024 TRSNL---DPLEEHADEQIWEALDKCQ-------LGDEVRKKKGKLDSQ----------- 1062
N+ D + E+I A + L D+ + G +Q
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1063 GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL 1122
R DEAT+++DT ++ +Q+ L + T + IAHR++++ ++ +++++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1123 NHGLIKEYDSPTKLLENKSSSFAQL 1147
+G +KE+ + +LL K F+ +
Sbjct: 1243 QNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/516 (21%), Positives = 207/516 (40%), Gaps = 82/516 (15%)
Query: 699 AVGASTLIIVYVGAGY--KTATQLFNKMHVCIFRAPMY----FFDSTPSGRILNRVSENV 752
+GA LI+ Y+ + A + +K+ F A M +FD G + R++++V
Sbjct: 116 GIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDV 175
Query: 753 KWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPV-----IATFIWYQ 807
++ D IG F +M G ++ W++ +V + + ++ IW +
Sbjct: 176 SKINEGIGD-----KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAK 230
Query: 808 QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSL---DQELRFRDTNMKLIDEYSR 864
I S+ L KA + + E ++ T+ + +EL + N++
Sbjct: 231 ---ILSSFTDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285
Query: 865 PKFHIA----GAMEWLRFCIDMLS-----------------SITFAFSL---AFLISVPN 900
K A GA L + L+ +T FS+ AF + +
Sbjct: 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQAS 345
Query: 901 GIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNN------------SRPSHGEV 948
I + N V +I+ PS + KP+N S PS EV
Sbjct: 346 PNIEAFANARGAAYEVFKIIDNK--PSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403
Query: 949 NI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR 1007
I + L ++ + L G +G GKST +Q + R+ + G + IDG+DI I + LR
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 1008 TRLSIIPQDPTMFEGTTRSNLD-PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ---- 1062
+ ++ Q+P +F T N+ E+ ++I +A+ + D + K + D+
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523
Query: 1063 --------------GRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
R DEAT+++DT ++ +Q L + T + IAH
Sbjct: 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH 583
Query: 1109 RITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144
R+++V ++ ++ + G+I E + +L+ K F
Sbjct: 584 RLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 11 FRYKPDSP-VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDL 69
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 70 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 129
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 188
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 189 --KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 107/237 (45%), Gaps = 34/237 (14%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
H ++ R+++ RY P+ P++L GR GSGKSTL + + R G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQL 1048
+LIDG D++L + LR ++ ++ QD + + N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1049 GD---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQI 1090
D E+R+ ++G S G R DEAT+++D +++ I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 20/198 (10%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR 1009
+R + PN + G +G GKST+ L R + TAG I IDG+ I I L + R++
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77
Query: 1010 LSIIPQDPTMFEGTTRSNLD-PLE-EHADEQIWEALDKC-----------QLGDEVRKKK 1056
+ + QD + GT R NL LE ++ DE +W+ LD QL EV ++
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 1057 GKLDSQGRXXXXXXXX-------XXXDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
K+ R DEATAS+D+ +++ +Q+ L T + IAHR
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHR 197
Query: 1110 ITSVLDSAMVLLLNHGLI 1127
+++++D+ + + G I
Sbjct: 198 LSTIVDADKIYFIEKGQI 215
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK- 423
F++D S LR+I+ + +A G G GKS+ S + +G I + G
Sbjct: 9 FAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 424 ------------AYVAQSPWIQSGKIEENILFGKEMD--RERYERVLEACSLKKDLEVLP 469
+V+Q I +G I EN+ +G E D E +VL+ + +E +P
Sbjct: 67 DNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMP 126
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVS 528
T +GERG+ +SGGQ+QR+ IAR ++ I +LD+ + +D + + + K +
Sbjct: 127 DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM 186
Query: 529 SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
+T + H++ + AD I I+ G+IT +GK+++++
Sbjct: 187 KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 11 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 69
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 70 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 129
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 188
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 189 --KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 34/237 (14%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
H ++ R+++ RY P+ P++L GR+GSGKSTL + + R G
Sbjct: 1 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQL 1048
+LIDG D++L + LR ++ ++ QD + + N+ E++ A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1049 GD---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQI 1090
D E+R+ ++G S G R DEAT+++D +++ I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 9 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 68 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 127
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 186
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 187 --KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ E++ A D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1051 ---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQIQQ 1092
E+R+ ++G S G R DEAT+++D +++ I +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 133
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 193 --KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ E++ A D
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 1051 ---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQIQQ 1092
E+R+ ++G S G R DEAT+++D +++ I +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 133
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D S +D +H ++ K C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKIC- 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 193 --KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ E++ A D
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 1051 ---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQIQQ 1092
E+R+ ++G S G R D+AT+++D +++ I +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 9 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 68 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 127
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 186
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI ++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 187 --KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ E++ A D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1051 ---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQIQQ 1092
E+R+ ++G S G R DEAT+++D +++ I +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + TV+ IA R+++V ++ ++++ G I E +LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 109/222 (49%), Gaps = 22/222 (9%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
F + SP L NINL + G + + G GSGKS+ I E+G + + G
Sbjct: 15 FRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 73
Query: 425 YVAQSPWI--QSGKI-EENILFGKEMDRE--------RYERVLEACSLKKD---LEVLPF 470
+A W+ Q G + ++N+L + + E+V+ A L + L
Sbjct: 74 ALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE 133
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---DHT-GAHLFKFCW 526
G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +H ++ K C
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC- 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+TVI ++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 193 --KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 106/235 (45%), Gaps = 34/235 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ E++ A D
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 126
Query: 1051 ---EVRK-------KKGKLDSQG--------RXXXXXXXXXXXDEATASVDTATDNQIQQ 1092
E+R+ ++G S G R DEAT+++D +++ I +
Sbjct: 127 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + TV+ IA R+++V ++ ++++ G I E +LL S ++ L
Sbjct: 187 NMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 29/226 (12%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IEI S W N +L N++LKV G + G G+GK+ L I G +SG I
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 418 RLCGTK-----------AYVAQS-PWIQSGKIEENILFGKEMDR-ERYERVLEACSLKKD 464
L G A+V Q+ +++N+ FG M + + +RVL+ +D
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA---RD 114
Query: 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF 524
L++ + ++ + LSGG++QR+ +AR L + I LLD+P S +D T + +
Sbjct: 115 LKI-----EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169
Query: 525 CWVSSSK---TVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
V K TV++ TH Q E AD I V+ DGK+ Q GK +I
Sbjct: 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 33/223 (14%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA---------- 424
L+++N + G V G GSGK++ L IL G+ +G I L G+ A
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLK-ILAGLLAAAGEIFLDGSPADPFLLRKNVG 84
Query: 425 YVAQSPWIQ--SGKIEENILFGKEMD-------RERYERVLEACSLKKDLEVLPFGDQTI 475
YV Q+P Q +EE++ F E+ R+R ++VLE L P
Sbjct: 85 YVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP------ 138
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSSKTV 533
+NLSGGQKQR+ IA L +D LD+P S +D + +F+ + K +
Sbjct: 139 -----LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGI 193
Query: 534 IYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
I TH++E+L D IL I +G I G + + + D +E+
Sbjct: 194 ILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEI 236
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995
+G+ ++ + + V+ G+ GSGK+TL++ L ++ + AG I +DG
Sbjct: 22 NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDG 71
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 20/244 (8%)
Query: 353 NSDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411
N ++ D SF++ + PN L+ + ++ G A+ G GSGKS+ + +
Sbjct: 12 NMKGLVKFQDVSFAYP-NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 412 KESGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFG--KEMDRERYERVL 456
G + L G A V Q P + ENI +G + E V
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130
Query: 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
+ P G T +GE G LSGGQ+Q + +AR L + + +LD S +D
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAG 190
Query: 517 TGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573
+ + + S +S+TV+ THQ+ A IL +K+G + + G + ++ G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 574 MELV 577
+V
Sbjct: 251 RSMV 254
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 23/219 (10%)
Query: 943 PSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI 1001
P+H V + + L P L G GSGKST+ L + + T G +L+DG+ +
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY 86
Query: 1002 GLHDLRTRLSIIPQDPTMFEGTTRSNL------DPLEEHADEQIWEA------------- 1042
H L T+++ + Q+P +F + R N+ P E E+
Sbjct: 87 DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 1043 -LDKCQLGDEVRKKKGKLDSQGRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQ--HFS 1099
+ + G+++ + + + R D+AT+++D ++Q+ L + ++
Sbjct: 147 DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWA 206
Query: 1100 DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
TV+ I H+++ + +L L G + E + +L+E
Sbjct: 207 SRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 38/221 (17%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG- 435
++INL + G V G G GKS+ L I G SG + G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 436 -------------KIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
+ EN+ FG KE+ +R +V E L L+ P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA---- 133
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKT 532
LSGGQ+QR+ I R L + +FLLD+P S +D + +T
Sbjct: 134 -------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 533 VIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNSGTD 572
+IY TH QVE + AD I+V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 38/221 (17%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG- 435
++INL + G V G G GKS+ L I G SG + G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 436 -------------KIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
+ EN+ FG KE+ +R +V E L L+ P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA---- 133
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKT 532
LSGGQ+QR+ I R L + +FLLD+P S +D + +T
Sbjct: 134 -------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 533 VIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNSGTD 572
+IY TH QVE + AD I+V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 104/244 (42%), Gaps = 20/244 (8%)
Query: 353 NSDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411
N ++ D SF++ + PN L+ + ++ G A+ G GSGKS+ + +
Sbjct: 12 NMKGLVKFQDVSFAYP-NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 412 KESGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFG--KEMDRERYERVL 456
G + L G A V Q P + ENI +G + E V
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130
Query: 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
+ P G T +GE G LSGGQ+Q + +AR L + + +LD+ S +D
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 517 TGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573
+ + + S +S+TV+ T Q+ A IL +K+G + + G + ++ G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 574 MELV 577
+V
Sbjct: 251 RSMV 254
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 943 PSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI 1001
P+H V + + L P L G GSGKST+ L + + T G +L+DG+ +
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY 86
Query: 1002 GLHDLRTRLSIIPQDPTMFEGTTRSNL------DPLEEHADEQIWEA------------- 1042
H L T+++ + Q+P +F + R N+ P E E+
Sbjct: 87 DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 1043 -LDKCQLGDEVRKKKGKLDSQGRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQ--HFS 1099
+ + G+++ + + + R D AT+++D ++Q+ L + ++
Sbjct: 147 DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA 206
Query: 1100 DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
TV+ I +++ + +L L G + E + +L+E
Sbjct: 207 SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 95/221 (42%), Gaps = 38/221 (17%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG- 435
++INL + G V G G GKS+ L I G SG + G K + +P + G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEK-RMNDTPPAERGV 77
Query: 436 -------------KIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
+ EN+ FG KE+ +R +V E L L+ P
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA---- 133
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKT 532
LSGGQ+QR+ I R L + +FLLD P S +D + +T
Sbjct: 134 -------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 533 VIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNSGTD 572
+IY TH QVE + AD I+V+ G++ Q GK ++ + D
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP---- 430
L NINLK+ G +A+ G GSGKS+ L I G SG ++ + V + P
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG--KIYFDEKDVTELPPKDR 75
Query: 431 --------W--IQSGKIEENILFGKEMDRERYERVLEAC-SLKKDLEVLPFGDQTIIGER 479
W + +NI F E+ + E + + + K L + ++
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI-----DKLLNRY 130
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD----HTGAHLFKFCWVSSSKTVIY 535
LSGGQ+QR+ IAR L ++ ++ LLD+P S +D A L K T +Y
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL-KRLQKELGITTVY 189
Query: 536 ATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
TH Q E L AD I VI++G+I Q G ++
Sbjct: 190 VTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999
+ L G +GSGKSTL+ T+ I + T+G I D KD++
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT 68
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 20/244 (8%)
Query: 353 NSDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411
N ++ D SF++ + PN L+ + ++ G A+ G GSGKS+ + +
Sbjct: 12 NMKGLVKFQDVSFAYP-NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 412 KESGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFG--KEMDRERYERVL 456
G + L G A V Q P + ENI +G + E V
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130
Query: 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
+ P G T +GE G L+ GQ+Q + +AR L + + +LD+ S +D
Sbjct: 131 MESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAG 190
Query: 517 TGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573
+ + + S +S+TV+ T Q+ A IL +K+G + + G + ++ G +
Sbjct: 191 NQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250
Query: 574 MELV 577
+V
Sbjct: 251 RSMV 254
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 943 PSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI 1001
P+H V + + L P L G GSGKST+ L + + T G +L+DG+ +
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY 86
Query: 1002 GLHDLRTRLSIIPQDPTMFEGTTRSNL------DPLEEHADEQIWEA------------- 1042
H L T+++ + Q+P +F + R N+ P E E+
Sbjct: 87 DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 1043 -LDKCQLGDEVRKKKGKLDSQGRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQ--HFS 1099
+ + G+++ + + + R D AT+++D ++Q+ L + ++
Sbjct: 147 DTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA 206
Query: 1100 DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
TV+ I +++ + +L L G + E + +L+E
Sbjct: 207 SRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 22/246 (8%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
++ D SF++ L+ + + G A+ G GSGKS+ + + G +
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464
L G A V Q P + ++ENI +G + ++ + A ++K
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYG--LTQKPTMEEITAAAVKSG 132
Query: 465 ----LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
+ LP G T + E G LSGGQ+Q + +AR L + + +LDD S +D ++
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 521 LFKFCWVSS---SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+ + + S S++V+ T + + AD IL ++ G I + G + ++ + +V
Sbjct: 193 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 252
Query: 578 GAHKQA 583
A A
Sbjct: 253 QAPADA 258
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 42/248 (16%)
Query: 943 PSHGEVNIRHLQVRYA-PNLP--LVLRGRT---------------GSGKSTLIQTLFRIV 984
P H E ++ V +A PN P LVL+G T GSGKST+ L +
Sbjct: 8 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 67
Query: 985 ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQIWEA 1042
+ T G +L+DGK + L +++ + Q+P +F + + N+ ++ E+I A
Sbjct: 68 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 127
Query: 1043 LDKC------------------QLGDEVRKKKGKLDSQGRXXXXXXXXXXXDEATASVDT 1084
K + G ++ + + + R D+AT+++D
Sbjct: 128 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 187
Query: 1085 ATDNQIQQTLRQ---HFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKS 1141
+ Q++Q L + +S +V+ I ++ V + +L L G I+E + +L+E K
Sbjct: 188 NSQLQVEQLLYESPERYSR-SVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 1142 SSFAQLVA 1149
+A + A
Sbjct: 247 CYWAMVQA 254
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 94/223 (42%), Gaps = 39/223 (17%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG-GVPKESGII---RLCGTKAYVAQSP 430
L N+N+ + +G R + G G+GK++ + I G VP + RL + + P
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 431 -----------WIQSGKIE--ENILF-------GKEMDRERYERVLEACSLKKDLEVLPF 470
W + ENI F KE R+R E V + + L P
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH---TGAHLFKFCWV 527
LSGGQ+QR+ +AR L +D + LLD+PFS +D + L K
Sbjct: 140 -----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 528 SSSKTVIYATHQ-VEFLPAADLILVIKDGKITQAGKYSDILNS 569
T++ +H + AD + V+ GK+ Q GK D+ ++
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG-GVPKESGII---RLCGTKAYVAQSP 430
L N+N+ + +G R + G G+GK++ + I G VP + RL + + P
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79
Query: 431 -----------WIQSGKIE--ENILF-------GKEMDRERYERVLEACSLKKDLEVLPF 470
W + ENI F KE R+R E V + + L P
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH---TGAHLFKFCWV 527
LSG Q+QR+ +AR L +D + LLD+PFS +D + L K
Sbjct: 140 -----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 528 SSSKTVIYATHQ-VEFLPAADLILVIKDGKITQAGKYSDILNS 569
T++ +H + AD + V+ GK+ Q GK D+ ++
Sbjct: 189 RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 37/216 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCGTK----------- 423
L+N+NL + G V++ G GSGKS+ L+ I+G + K + G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 424 ------AYVAQS----PWIQS-GKIEENILF---GKEMDRERYERVLEACSLKKDLEVLP 469
+V Q P + + +E ++F G ER +R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALE-CLKXAELE--- 135
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCW 526
+ + LSGGQ+QR+ IAR L + I L D+P +D TG L K
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLN 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
KTV+ TH + + I+ +KDG++ + K
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 358 IEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
IE+++ S + +P L N++L + G + V G GSGKS+ L + G + SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 416 IIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY--ERVLEACS------------- 460
+ G + + +I NI + +++ ERV + +
Sbjct: 63 DVLYDGERK--------KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 114
Query: 461 --LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+KK +E + + LSGG+K+R+ IA + + DI +LD+P +D
Sbjct: 115 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 519 AHLFKFC--WVSSSKTVIYATHQVE-FLPAADLILVIKDGKITQAGKYSDILNS 569
L + W + KTVI +H +E + D ++V++ GK G + L
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 948 VNIRHLQVRYAP-------NLPLVLR--------GRTGSGKSTLIQTLFRIVESTAGHIL 992
VN+ H+ R P N+ LV+ G TGSGKSTL+Q + ++E T+G +L
Sbjct: 6 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 65
Query: 993 IDGK 996
DG+
Sbjct: 66 YDGE 69
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCGTK----------- 423
L+N+NL + G V++ G GSGKS+ L+ I+G + K + G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 424 ------AYVAQS----PWIQS-GKIEENILF---GKEMDRERYERVLEACSLKKDLEVLP 469
+V Q P + + +E ++F G ER +R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE-CLKMAELE--- 135
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCW 526
+ + LSGGQ+QR+ IAR L + I L D P +D TG L K
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLN 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
KTV+ TH + + I+ +KDG++ + K
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 358 IEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
IE+++ S + +P L N++L + G + V G GSGKS+ L + G + SG
Sbjct: 5 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 64
Query: 416 IIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY--ERVLEACS------------- 460
+ G + + +I NI + +++ ERV + +
Sbjct: 65 DVLYDGERK--------KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 116
Query: 461 --LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+KK +E + + LSGG+K+R+ IA + + DI +LD+P +D
Sbjct: 117 PLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 519 AHLFKFC--WVSSSKTVIYATHQVE-FLPAADLILVIKDGKITQAGKYSDILNS 569
L + W + KTVI +H +E + D ++V++ GK G + L
Sbjct: 177 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 948 VNIRHLQVRYAP-------NLPLVLR--------GRTGSGKSTLIQTLFRIVESTAGHIL 992
VN+ H+ R P N+ LV+ G TGSGKSTL+Q + ++E T+G +L
Sbjct: 8 VNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVL 67
Query: 993 IDGK 996
DG+
Sbjct: 68 YDGE 71
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCGTK----------- 423
L+N+NL + G V++ G GSGKS+ L+ I+G + K + G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 424 ------AYVAQS----PWIQS-GKIEENILF---GKEMDRERYERVLEACSLKKDLEVLP 469
+V Q P + + +E ++F G ER +R LE C +LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE-CLKMAELE--- 135
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCW 526
+ + LSGGQ+QR+ IAR L + I L D P +D TG L K
Sbjct: 136 ---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192
Query: 527 VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
KTV+ TH + + I+ +KDG++ + K
Sbjct: 193 EEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 37/225 (16%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----------- 423
++R ++ ++ G V + G GSGK++ L I G G + + G +
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 424 AYVAQS-PWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLEVLPFGDQT 474
V Q+ Q + +N+ FG EMD R +L L+ P
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-ARVRELLRFMRLESYANRFPH---- 144
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
LSGGQ+QR+ +AR L + L D+PF+ +D L F +
Sbjct: 145 -------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 532 TVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNS-GTDFM 574
T ++ TH Q E L AD +LV+ +G + Q G ++ GT F+
Sbjct: 198 TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFV 242
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 933 IEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992
+E P +R G Q+R + L+ G +GSGK+T+++ + + T G +
Sbjct: 20 VEKIYPGGARSVRGV----SFQIREGEMVGLL--GPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT---------RSNLDPLEEHADEQIWEAL 1043
I GK ++ L + + ++ Q+ +F+ T R P +E D ++ E L
Sbjct: 74 IGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE-MDARVRELL 130
Query: 1044 DKCQLGDEVRKKKGKLD-------SQGRXXXXXXXXXXXDEATASVDTATDNQIQQTLRQ 1096
+L + +L + R DE A++DT +++ +RQ
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 1097 HFSD--CTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153
+ T V + H L+ A VL+L+ G ++++ +P ++ E + F VA +
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF---VASFIG 247
Query: 1154 SSS 1156
S+
Sbjct: 248 ESN 250
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 39/238 (16%)
Query: 363 GSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422
G S F + P L +I+L + G + + G G GK++ L C+ G +SG I L G
Sbjct: 8 GHLSKSFQN-TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66
Query: 423 KAYVAQSPW----------IQSG------KIEENILFG-------KEMDRERYERVLEAC 459
+ + +Q G + NI +G +R+R E +LE
Sbjct: 67 TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT 126
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+ + + G LSGGQ+QR +AR L D ++ LLD+PFS +D+
Sbjct: 127 GISE-----------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRR 175
Query: 520 HLFK---FCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573
+ + ++ K+ ++ +H + E L AD I V+K G+I Q ++ D
Sbjct: 176 QIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 364 SFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK 423
+ + + + N + +N + G +AV G G GKS+ L +LG G I + +
Sbjct: 9 NLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSI 68
Query: 424 AYVAQ---SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
+V Q SP+ S + + +L G+ + + ++ + ++ L + + T + +R
Sbjct: 69 GFVPQFFSSPFAYS--VLDIVLMGRSTHINTFAKP-KSHDYQVAMQALDYLNLTHLAKRE 125
Query: 481 I-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTVIY 535
+LSGGQ+Q I IAR + + + LLD+P S +D D + L S + TV++
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVF 184
Query: 536 ATHQ 539
THQ
Sbjct: 185 TTHQ 188
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 42/248 (16%)
Query: 349 MPRGNSDTAIEIID-GSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC-- 405
+PRG+ +++ID F S L+ IN+ + G V V G GSGKS+ L C
Sbjct: 15 VPRGSH--MLQMIDVHQLKKSFGSLE-VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN 71
Query: 406 ----------ILGGV---PKESGIIRLCGTKAYVAQS-PWIQSGKIEENILFG----KEM 447
I+ G+ K++ + ++ V Q + NI ++
Sbjct: 72 LLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKW 131
Query: 448 DRERYE----RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503
RE+ E +L+ LK P +LSGGQ QR+ IAR L + I
Sbjct: 132 PREKAEAKAMELLDKVGLKDKAHAYP-----------DSLSGGQAQRVAIARALAMEPKI 180
Query: 504 FLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFL-PAADLILVIKDGKITQA 560
L D+P S +D + + T++ TH++ F D +L + G I +
Sbjct: 181 MLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240
Query: 561 GKYSDILN 568
GK D+ +
Sbjct: 241 GKPEDLFD 248
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 20/196 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMF 1020
+V+ G +GSGKST ++ L + + G I+IDG ++ L+ +R + ++ Q +F
Sbjct: 53 VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112
Query: 1021 EGTTRSN---LDPLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GR 1064
T N L P++ E A+ + E LDK L D+ L R
Sbjct: 113 PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172
Query: 1065 XXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSVLDSA-MVLLL 1122
DE T+++D ++ ++Q ++ T+V + H + + VL +
Sbjct: 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232
Query: 1123 NHGLIKEYDSPTKLLE 1138
+ G I E P L +
Sbjct: 233 DGGYIIEEGKPEDLFD 248
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 38/221 (17%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSC------------ILGGV---PKESGIIRL 419
L+ IN+ + G V V G GSGKS+ L C I+ G+ K++ + ++
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 420 CGTKAYVAQS-PWIQSGKIEENILFG----KEMDRERYE----RVLEACSLKKDLEVLPF 470
V Q + NI ++ RE+ E +L+ LK P
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP- 136
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVS 528
+LSGGQ QR+ IAR L + I L D+P S +D + +
Sbjct: 137 ----------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 529 SSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILN 568
T++ TH++ F D +L + G I + GK D+ +
Sbjct: 187 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 20/196 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMF 1020
+V+ G +GSGKST ++ L + + G I+IDG ++ L+ +R + ++ Q +F
Sbjct: 32 VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 91
Query: 1021 EGTTRSN---LDPLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GR 1064
T N L P++ E A+ + E LDK L D+ L R
Sbjct: 92 PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 151
Query: 1065 XXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSVLDSA-MVLLL 1122
DE T+++D ++ ++Q ++ T+V + H + + VL +
Sbjct: 152 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 211
Query: 1123 NHGLIKEYDSPTKLLE 1138
+ G I E P L +
Sbjct: 212 DGGYIIEEGKPEDLFD 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 364 SFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES--------- 414
++++S L+ IN+ + G A+ G G GKS+ G+ K S
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQN-FNGILKPSSGRILFDNK 70
Query: 415 -------GIIRLCGTKAYVAQSPWIQ--SGKIEENILFG----KEMDRERYERVLEACSL 461
GI++L + V Q P Q S + +++ FG K + E +RV A L
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA--L 128
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
K+ G + + + LS GQK+R+ IA L + + +LD+P + +D + +
Sbjct: 129 KRT------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 522 FKFCWVSSSK---TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567
K + T+I ATH ++ +P D + V+K+G++ G ++
Sbjct: 183 MKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLHDLRTRLSIIPQDP 1017
G G GKSTL Q I++ ++G IL D K D S G+ LR + I+ QDP
Sbjct: 41 GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTVIYATH 538
LSGGQ+QR+ +AR + + D+ L+D+P S +D + K T IY TH
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 539 -QVEFLPAADLILVIKDGKITQAGKYSDI 566
QVE + D I V+ G++ Q G +++
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTVIYATH 538
LSGGQ+QR+ +AR + + D+ L+D+P S +D + K T IY TH
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 539 -QVEFLPAADLILVIKDGKITQAGKYSDI 566
QVE + D I V+ G++ Q G +++
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSS 529
D+ G+ ++LSGGQ+QR+ IAR L + D+ L D+P S +D + +
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 530 SKTVIYATHQVEFL-PAADLILVIKDGKITQAG 561
KT++ TH++ F + ++ + GKI + G
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 87/215 (40%), Gaps = 29/215 (13%)
Query: 376 LRNINLKVFHGMRVAVC---GTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
L N L V M C G G+GKS L I G V + G +RL G A + P
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG--ADITPLPPE 68
Query: 433 QSG--------------KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+ G + NI +G +K G ++
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK------LGIAHLLDR 122
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTVIY 535
+ LSGG++QR+ +AR L + LLD+P S VD T L +F +++
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 536 ATHQ-VEFLPAADLILVIKDGKITQAGKYSDILNS 569
TH +E AD + V+ +G+I + GK ++ ++
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
VL G TG+GKS ++ + IV+ G + ++G DI+ L R + +PQD +F
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHL 85
Query: 1024 T---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ----GRXXXXXX 1070
+ R+ + ++ E L L D + + Q R
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145
Query: 1071 XXXXXDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRI--TSVLDSAMVLLLNHGL 1126
DE ++VD T + + LR Q D ++ + H + ++L + ++LN G
Sbjct: 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN-GR 204
Query: 1127 IKEYDSPTKLLENKSSSFAQLVA 1149
I E +L K+ A+ ++
Sbjct: 205 IVEKGKLKELFSAKNGEVAEFLS 227
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGIIRLCGTKAYVAQSPWIQS 434
L N++L V G V G G+GKS+ + C+ L P E ++ +++S ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 435 GK-----------IEENILFGK-----EMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
+ + +FG E+D E RV E SL + GD+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL------VGLGDKH 134
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
NLSGGQKQR+ IAR L + + L D+ S +D T + + + +
Sbjct: 135 --DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T++ TH+++ + D + VI +G++ + S++ +
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG- 1022
G +G+GKSTLI+ + + T G +L+DG++++ + +L R ++ +I Q +
Sbjct: 38 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 97
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRXXXX 1068
T N+ PLE + ++ E L LGD+ L + R
Sbjct: 98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157
Query: 1069 XXXXXXXDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD-SAMVLLLNHG 1125
DEAT+++D AT I + L+ T++ I H + V V ++++G
Sbjct: 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 217
Query: 1126 LIKEYDSPTKLLENKSSSFAQ 1146
+ E D+ +++ + + AQ
Sbjct: 218 ELIEQDTVSEVFSHPKTPLAQ 238
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 89/223 (39%), Gaps = 27/223 (12%)
Query: 374 PTLRNINLKVFHGMR---------------VAVCGTVGSGKSSCLSCILGGVPKESGIIR 418
P++R +NLK + G VA+ G G GK++ L + G SG I
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 419 LCGTKAYVAQSPWIQSGKIEENILFGKEMDR-ERYERVLEACSLKKD---LEVLPFGDQT 474
+ + G + +N M E L A + KD V+ +
Sbjct: 62 FDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121
Query: 475 II----GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWV 527
+I + LSGGQ+QR+ +AR L + + L D+P S +D + + K
Sbjct: 122 LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181
Query: 528 SSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNS 569
T +Y TH Q E + A I V GK+ Q G ++ +S
Sbjct: 182 ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGIIRLCGTKAYVAQSPWIQS 434
L N++L V G V G G+GKS+ + C+ L P E ++ +++S ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 435 GK-----------IEENILFGK-----EMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
+ + +FG E+D E RV E SL + GD+
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL------VGLGDKH 157
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
NLSGGQKQR+ IAR L + + L D S +D T + + + +
Sbjct: 158 --DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T++ TH+++ + D + VI +G++ + S++ +
Sbjct: 216 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 21/201 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG- 1022
G +G+GKSTLI+ + + T G +L+DG++++ + +L R ++ +I Q +
Sbjct: 61 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRXXXX 1068
T N+ PLE + ++ E L LGD+ L + R
Sbjct: 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180
Query: 1069 XXXXXXXDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD-SAMVLLLNHG 1125
D+AT+++D AT I + L+ T++ I H + V V ++++G
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240
Query: 1126 LIKEYDSPTKLLENKSSSFAQ 1146
+ E D+ +++ + + AQ
Sbjct: 241 ELIEQDTVSEVFSHPKTPLAQ 261
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 36/229 (15%)
Query: 367 WDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--- 423
W +R ++L+V G + + G G GK++ L I G G I + G K
Sbjct: 10 WKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVA 68
Query: 424 ---------------AYVAQSPWIQSG-KIEENILFGKEMDR----ERYERVLEACSLKK 463
A V QS + + +NI F ++ + E +RV E L
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL-- 126
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-- 521
G ++ + LSGGQ+QR+ + R + + +FL+D+P S +D +
Sbjct: 127 ------LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 522 -FKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILN 568
K T IY TH QVE + D I V+ G + Q G ++ +
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 99/227 (43%), Gaps = 33/227 (14%)
Query: 946 GEVN-IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH 1004
GEV +R + + ++L G +G GK+T ++ + + E + G I I K ++
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVA----- 68
Query: 1005 DLRTRLSIIPQD---PTMFEG-------TTRSNLD-PLE------EHADEQIWEALDKCQ 1047
D + + P+D +F+ T N+ PL+ + D+++ E +
Sbjct: 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG 128
Query: 1048 LGDEVRKKKGKLD-------SQGRXXXXXXXXXXXDEATASVDTATDNQIQQTLR--QHF 1098
L + + +K +L + GR DE +++D +++ L+ Q
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 1099 SDCTVVTIAH-RITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144
T + + H ++ ++ + ++N G++++ SP ++ + +++F
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 33/218 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGIIRLCGTKAYVAQSPWIQS 434
L N++L V G V G G+GKS+ + C+ L P E ++ +++S ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 435 GK-----------IEENILFGK-----EMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
+ + +FG E+D E RV E SL + GD+
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL------VGLGDKH 157
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
NLSGGQKQR+ IAR L + + L D S +D T + + + +
Sbjct: 158 --DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T++ TH+ + + D + VI +G++ + S++ +
Sbjct: 216 TILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFS 253
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG- 1022
G +G+GKSTLI+ + + T G +L+DG++++ + +L R ++ I Q +
Sbjct: 61 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSR 120
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRXXXX 1068
T N+ PLE + ++ E L LGD+ L + R
Sbjct: 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180
Query: 1069 XXXXXXXDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHR---ITSVLDSAMVLLLN 1123
D+AT+++D AT I + L+ T++ I H + + D V +++
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDC--VAVIS 238
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQ 1146
+G + E D+ +++ + + AQ
Sbjct: 239 NGELIEQDTVSEVFSHPKTPLAQ 261
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----AYVAQSPW 431
L+ I+ ++ G + + G G+GK++ L+ + P SG + L G Y A++
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 432 IQSGKIEENILFGKEMDRERYERVLEACSLK-----KDL---------EVLPFGDQTIIG 477
G + ++L K + ER V+ + + K +D+ ++L +
Sbjct: 97 QHIGFVSHSLL-EKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 478 ERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKT 532
++ I LS G+KQR+ IAR L + +LD+P + +D + + L +
Sbjct: 156 QQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLA 215
Query: 533 VIYATHQVEFLPAA-DLILVIKDGKITQAGKYSDILNS 569
IY TH +E + A IL++KDG+ Q G DIL S
Sbjct: 216 XIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/229 (24%), Positives = 94/229 (41%), Gaps = 48/229 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------T 422
+ +++L + G VA+ G G+GKS+ L + G + G L G T
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 423 KAYVAQ----------SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGD 472
+A + Q S IQ G+ +G DR+ ++V+ + D L D
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAP----YGGSQDRQALQQVMA----QTDCLALAQRD 138
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQ------DADIFLLDDPFSPVDDHTGAHLFKFCW 526
+ LSGG++QR+Q+AR L Q LD+P S +D + H +
Sbjct: 139 YRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 527 VSSSK---TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGT 571
+ + V H + AD I+++ GK+ G ++LN+ T
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAET 240
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 379 INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE----SGIIRLCGTKAYVAQSPWIQS 434
I+L + A+ G SGKS+ + + +P SG + G + ++
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 435 GKIEENILFGKEMDR---------ERYERVLEACSLK-----------KDLEVLPFGDQT 474
+ +E L + + E ++ +EA ++ + L ++ +
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
++ + LSGG KQR+ IA L D + +LD+P S +D T AH+ +
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQ 559
T+I+ TH + AD + VI G + +
Sbjct: 207 TLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCW 526
G ++ + LSGGQ+QR+ + R + + +FL D+P S +D K
Sbjct: 130 LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 527 VSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
T IY TH QVE D I V G++ Q G ++
Sbjct: 190 RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 42/211 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRLCGTK---------- 423
L+ I+L V G V++ G GSGKS+ L ILG P E G + L G +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTE-GKVFLEGKEVDYTNEKELS 77
Query: 424 -------AYVAQSPW-IQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVL 468
+V Q + I EN++ K+ +ER E +L L L
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWV 527
P+ LSGG++QR+ IAR L + + D+P +D + F +
Sbjct: 138 PY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 528 SSSKT-VIYATHQVEFLPAADLILVIKDGKI 557
+ T ++ TH+ E L +KDGK+
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKV 217
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTR-LSIIPQDPTMF-E 1021
G +GSGKSTL+ L + T G + ++GK++ L LR R L + Q + E
Sbjct: 37 GASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96
Query: 1022 GTTRSN-LDPL------EEHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRXXX 1067
T N + P+ ++ A E+ L + LGD++ +K +L + R
Sbjct: 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA 156
Query: 1068 XXXXXXXXDEATASVDTATDNQIQQT-LRQHFSDCTVVTIAH 1108
DE T ++D+A ++ L+ + ++V + H
Sbjct: 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L L++ R +CG G GKS+ + I G C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT-VYV--------- 500
Query: 436 KIEENILFGKEMDRERYERVLEAC-----SLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490
E+ + G D + V E+ ++K L F D+ I LSGG K +
Sbjct: 501 ---EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA-LSGGWKMK 556
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF---CWVSSSKTVIYATHQVEFL 543
+ +AR + ++ADI LLD+P + +D A L + C ++S I +H FL
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS----ITISHDSVFL 608
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
R L +++ +L + + R LSGGQK ++ +A +Q + +LD+P + +
Sbjct: 873 RPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 514 DDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561
D + L K VI TH EF + + +KDG++T +G
Sbjct: 933 DRDSLGALSK-ALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS---GKIE 438
++ G + + G G GK++ + + G G + T AY Q +I++ G +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVY 435
Query: 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
E L K +D + L K L ++ D+ + +LSGG+ QR+ IA L
Sbjct: 436 E--LLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 487
Query: 499 QDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555
+DADI+LLD+P + +D + + + KT + H V + L++ +G
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547
Query: 556 KITQAGK 562
+ + G+
Sbjct: 548 EPGRHGR 554
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
LSGG+ QR+ IA L + A + D+P S +D
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS 434
+L NINL+V +G +V + G GSGK++ L I G +P SG I + G + ++ S
Sbjct: 20 SLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYS 77
Query: 435 GKIEENILFG-------------KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481
+ E G K +DR+ + +L+A L ++ I+ +
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEE----------ILRRKLY 127
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVE 541
LS GQ ++ + L +I LD+PF V D H+ K I TH+++
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENV-DAARRHVISRYIKEYGKEGILVTHELD 186
Query: 542 FL 543
L
Sbjct: 187 ML 188
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE- 1021
+++ G GSGK+TL++ + ++ +G+I I+G ++ I R + P +E
Sbjct: 33 VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RNYIRYSTNLPEAYEI 86
Query: 1022 GTTRSNLDPLEEH---ADEQIW-EALDKCQLGDEVRKKKGKLDSQGRXXXXXXXXXXX-- 1075
G T +++ L E D ++ E L +LG+E+ ++K S G+
Sbjct: 87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146
Query: 1076 ------DEATASVDTATDNQIQQTLRQHFSDCTVVT 1105
DE +VD A + I + ++++ + +VT
Sbjct: 147 PEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVT 182
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS---GKIE 438
++ G + + G G GK++ + + G G + T AY Q +I++ G +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQ--YIKAEYEGTVY 421
Query: 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
E L K +D + L K L ++ D+ + +LSGG+ QR+ IA L
Sbjct: 422 E--LLSK-IDSSKLNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLL 473
Query: 499 QDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555
+DADI+LLD+P + +D + + + KT + H V + L++ +G
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 533
Query: 556 KITQAGK 562
+ + G+
Sbjct: 534 EPGRHGR 540
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
LSGG+ QR+ IA L + A + D+P S +D
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L L++ R +CG G GKS+ I G C T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT-VYV--------- 500
Query: 436 KIEENILFGKEMDRERYERVLEAC-----SLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490
E+ + G D + V E+ ++K L F D+ I LSGG K +
Sbjct: 501 ---EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKXK 556
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF---CWVSSSKTVIYATHQVEFL 543
+ +AR + ++ADI LLD+P + +D A L + C ++S I +H FL
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS----ITISHDSVFL 608
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEF 542
LSGGQK ++ +A +Q + +LD+P + +D + L K VI TH EF
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-ALKEFEGGVIIITHSAEF 960
Query: 543 LPA-ADLILVIKDGKITQAG 561
+ + +KDG+ T +G
Sbjct: 961 TKNLTEEVWAVKDGRXTPSG 980
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
+++ + F + +S P + +IN + R+AV G G+GKS+ ++ + G + SG
Sbjct: 672 VKVTNXEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 26/176 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L L++ R +CG G GKS+ I G C T YV
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRT-VYV--------- 494
Query: 436 KIEENILFGKEMDRERYERVLEAC-----SLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490
E+ + G D + V E+ ++K L F D+ I LSGG K +
Sbjct: 495 ---EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA-LSGGWKXK 550
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF---CWVSSSKTVIYATHQVEFL 543
+ +AR + ++ADI LLD+P + +D A L + C ++S I +H FL
Sbjct: 551 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS----ITISHDSVFL 602
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEF 542
LSGGQK ++ +A +Q + +LD+P + +D + L K VI TH EF
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK-ALKEFEGGVIIITHSAEF 954
Query: 543 LPA-ADLILVIKDGKITQAG 561
+ + +KDG+ T +G
Sbjct: 955 TKNLTEEVWAVKDGRXTPSG 974
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
+++ + F + +S P + +IN + R+AV G G+GKS+ ++ + G + SG
Sbjct: 666 VKVTNXEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 18/210 (8%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----AYVAQSP 430
++ I+LKV G V + G G+GK++ LS I G V + G I G A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 431 WI----QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER----GIN 482
I + +I + + + Y R + +K+DLE + F + ER G
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRK-DKEGIKRDLEWI-FSLFPRLKERLKQLGGT 139
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVE 541
LSGG++Q + I R L + D+P + + +F+ ++ T I Q
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 542 F--LPAADLILVIKDGKITQAGKYSDILNS 569
L A V++ G+I GK S++L++
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMF- 1020
+ L G G+GK+T + + +V + G I+ +G+DI+ H + R ++++P+ +F
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFP 94
Query: 1021 EGTTRSNL 1028
E T NL
Sbjct: 95 ELTVYENL 102
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS---GKIE 438
++ G + + G G GK++ + + G G I T AY Q +I++ G +
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVY 365
Query: 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
E L K +D + L K L ++ D+ + LSGG+ QR+ IA L
Sbjct: 366 E--LLSK-IDASKLNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLL 417
Query: 499 QDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555
+DADI+LLD+P + +D + + + KT + H V + L + +G
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFEG 477
Query: 556 KITQAGKYSDIL 567
+ GKY L
Sbjct: 478 ---EPGKYGRAL 486
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 43/161 (26%)
Query: 383 VFHGMRVAVCGTVGSGKSSCLSCILG--------------GVPK--------------ES 414
V G V + G G+GKS+ + + G GV + ++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 415 GIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
G IR YV P GK+ E L K + + E V++A L+ LE
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIE--LLKKADETGKLEEVVKALELENVLE-------- 153
Query: 475 IIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
R I +LSGG+ QR+ IA L ++A + D+P S +D
Sbjct: 154 ----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 476 IGERGINLSGGQKQRIQIARPLYQD---ADIFLLDDP---FSPVD-DHTGAHLFKFCWVS 528
+G+ LSGG+ QRI++A L + +++LD+P P D + L K V
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL--VD 781
Query: 529 SSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
+ TVI H+++ + A+D +L I G G+
Sbjct: 782 AGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGR 815
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI--------- 406
+ +EI D S +D P L I + + G V G G GK++ L I
Sbjct: 9 SKLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 407 ---LGGVP--KESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
GVP K G I + V + ++ L+G ++++ LE+
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES--- 121
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+EVL + +GE LS G +R+Q+A L +A+I++LDDP +D+ + +
Sbjct: 122 ---VEVLDLKKK--LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 522 FK 523
K
Sbjct: 173 LK 174
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 22/208 (10%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS- 434
L+ I+ ++ G + G G+GK++ L I + SGI+ + G K V + ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG-KNVVEEPHEVRKL 89
Query: 435 -GKIEENILFGKEMDRERYERVLE---ACS-------LKKDLEVLPFGDQTIIGERGINL 483
+ E + M Y R + A S +++ E+ G++ I +R
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK--IKDRVSTY 147
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--TVIYATH--- 538
S G +++ IAR L + + +LD+P S +D + K +S + T++ ++H
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207
Query: 539 QVEFLPAADLILVIKDGKITQAGKYSDI 566
+VEFL D I +I +G I + G ++
Sbjct: 208 EVEFL--CDRIALIHNGTIVETGTVEEL 233
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 95/214 (44%), Gaps = 29/214 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L G G+GK+T ++ + +++ ++G + + GK++ + H++R +S +P++ +
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRKLISYLPEEAGAY---- 100
Query: 1025 RSNLDPLE-------------EHADEQIWEALDKCQLGDEVRKK-----KGKLDSQ--GR 1064
N+ +E +E + A + LG++++ + KG + R
Sbjct: 101 -RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIAR 159
Query: 1065 XXXXXXXXXXXDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSV-LDSAMVLLL 1122
DE T+ +D ++++ L+Q + T++ +H + V + L+
Sbjct: 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219
Query: 1123 NHGLIKEYDSPTKLLEN-KSSSFAQLVAEYTSSS 1155
++G I E + +L E K+ + ++ E S
Sbjct: 220 HNGTIVETGTVEELKERYKAQNIEEVFEEVVKCS 253
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 476 IGERGINLSGGQKQRIQIARPLYQDAD---IFLLDDPFSPVDDHTGAHLFKFC--WVSSS 530
+G+ LSGG+ QR+++A L++ ++ +++LD+P + + A L V +
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 531 KTVIYATHQVEFLPAADLIL 550
TV+ H ++ + AD I+
Sbjct: 597 DTVLVIEHNLDVIKTADYII 616
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 35/217 (16%)
Query: 381 LKVFHGMRVAVC--------GTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------- 423
K G+ ++VC G GSGKS+ ++ I G + + G +
Sbjct: 20 FKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 424 -----AYVAQSPW-IQSGKIEENILFGK------EMDRERYERVL--EACSLKKDLEVLP 469
Q+P ++ + EN+L G+ ++ Y++ + E ++K ++L
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 470 FGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS 528
F + + +R LSGGQ + ++I R L + + ++D+P + V +F
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 529 SSK--TVIYATHQVEF-LPAADLILVIKDGKITQAGK 562
+K T + H+++ L D + V+ +G+I G+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 32/195 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS------LIGLHDLRTRLSIIP-QDPTM 1019
G GSGKSTLI + +++ G + + KDI+ L +RT + P ++ T+
Sbjct: 40 GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99
Query: 1020 FEGTTRSNLD---------------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-- 1062
E ++ P EE E+ ++ L+ +L +K G+L
Sbjct: 100 LENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159
Query: 1063 -----GRXXXXXXXXXXXDEATASVDTATDNQI-QQTLRQHFSDCTVVTIAHRITSVLD- 1115
GR DE A V + I L T + I HR+ VL+
Sbjct: 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNY 219
Query: 1116 -SAMVLLLNHGLIKE 1129
+ ++ N +I E
Sbjct: 220 IDHLYVMFNGQIIAE 234
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 476 IGERGINLSGGQKQRIQIARPLYQDAD---IFLLDDPFSPVDDHTGAHLFKFC--WVSSS 530
+G+ LSGG+ QR+++A L++ ++ +++LD+P + + A L V +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 531 KTVIYATHQVEFLPAADLIL 550
TV+ H ++ + AD I+
Sbjct: 899 DTVLVIEHNLDVIKTADYII 918
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 448 DRERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506
D +RY ++L+ + LK+D+E LSGG+ QR I Q+AD+++
Sbjct: 201 DVKRYIKILQLENVLKRDIE---------------KLSGGELQRFAIGMSCVQEADVYMF 245
Query: 507 DDPFSPVD--DHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVI 552
D+P S +D A ++ +K VI H + L +D + +I
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII 294
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
V P II + +LSGG+ QR+ I L ADI+L+D+P + +D
Sbjct: 452 VKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD 499
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 476 IGERGINLSGGQKQRIQIARPLYQDAD---IFLLDDPFSPVDDHTGAHLFKFC--WVSSS 530
+G+ LSGG+ QR+++A L++ ++ +++LD+P + + A L V +
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 531 KTVIYATHQVEFLPAADLIL 550
TV+ H ++ + AD I+
Sbjct: 899 DTVLVIEHNLDVIKTADYII 918
>pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF4|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp
Synthase, Tetrahedral Intermediate Bound State
pdb|1RF5|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In Unliganded State
pdb|1RF5|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In Unliganded State
pdb|1RF5|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In Unliganded State
pdb|1RF5|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In Unliganded State
pdb|1RF6|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In S3p-Glp Bound State
pdb|1RF6|B Chain B, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In S3p-Glp Bound State
pdb|1RF6|C Chain C, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In S3p-Glp Bound State
pdb|1RF6|D Chain D, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase
In S3p-Glp Bound State
Length = 427
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR------ 982
P L ++ TK N RP H E+ I QV+ A L+ G+S +I+ +
Sbjct: 145 PPLRLKGTK--NLRPIHYELPIASAQVKSA----LMFAALQAKGESVIIEKEYTRNHTED 198
Query: 983 IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016
+++ GH+ +DGK I++ G L + ++P D
Sbjct: 199 MLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGD 232
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----------- 423
L +++ V G + G GSGKS+ ++ I G + + G +
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 424 ---AYVAQSPW-IQSGKIEENILFGK------EMDRERYERVL--EACSLKKDLEVLPFG 471
Q+P ++ + EN+L G+ ++ Y++ + E ++K ++L F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 472 DQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSS 530
+ + +R LSGGQ + ++I R L + + ++D+P + V +F +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 531 K--TVIYATHQVEF-LPAADLILVIKDGKITQAGK 562
K T + H+++ L D + V+ +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 32/195 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS------LIGLHDLRTRLSIIP-QDPTM 1019
G GSGKSTLI + +++ G + + KDI+ L +RT + P ++ T+
Sbjct: 40 GPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99
Query: 1020 FEGTT-------RSNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-- 1062
E S L+ P EE E+ ++ L+ +L +K G+L
Sbjct: 100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQM 159
Query: 1063 -----GRXXXXXXXXXXXDEATASVDTATDNQI-QQTLRQHFSDCTVVTIAHRITSVLD- 1115
GR DE A V + I L T + I HR+ VL+
Sbjct: 160 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNY 219
Query: 1116 -SAMVLLLNHGLIKE 1129
+ ++ N +I E
Sbjct: 220 IDHLYVMFNGQIIAE 234
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK 445
G V VCG GSGK++ + I+ +PKE II + T+ V + K + FG
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-----FKHHKNYTQLFFGG 225
Query: 446 EMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+ A LK L + P D+ I+GE
Sbjct: 226 --------NITSADCLKSCLRMRP--DRIILGE 248
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+LSGG+ Q++ IA L ++AD+++LD P S +D
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVE 541
LSGG QR+ +A L ++AD+++ D P S +D ++ K + +K VI H +
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 542 FLP-AADLILVI 552
L DLI +I
Sbjct: 199 VLDYLTDLIHII 210
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYV 426
G V VCG GSGK++ + I +PKE II + T+ V
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIXEFIPKEERIISIEDTEEIV 211
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 33.5 bits (75), Expect = 0.73, Method: Composition-based stats.
Identities = 44/215 (20%), Positives = 92/215 (42%), Gaps = 29/215 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421
L +++ V G + G GSGKS+ ++ I G + + G +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 422 --TKAYVAQSPWIQSGKIEENILFGK------EMDRERYERVL--EACSLKKDLEVLPFG 471
+ + P ++ + EN+L G+ ++ Y++ + E ++K ++L F
Sbjct: 83 GIVRTFQTPQP-LKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 472 DQTIIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSS 530
+ + +R LSGGQ + ++I R L + + ++D P + V +F +
Sbjct: 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 531 K--TVIYATHQVEF-LPAADLILVIKDGKITQAGK 562
K T + H+++ L D + V+ +G+I G+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999
G GSGKSTLI + +++ G + + KDI+
Sbjct: 40 GPNGSGKSTLINVITGFLKADEGRVYFENKDIT 72
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 106/262 (40%), Gaps = 27/262 (10%)
Query: 307 ILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDV------LEKMPRGNSDTAIEI 360
++ E +Y P ++++ + K+P S E + + + + PR N T ++
Sbjct: 626 LVMETLY--PALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKV 683
Query: 361 IDGSFSWDFSSPNPTLRNINLKVF----HGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
D S +P R N F G R C G K L L V E +
Sbjct: 684 FDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEML--FLPDVYVECDV 741
Query: 417 IRLCGTKAYVAQSPWIQ-SGKIEENILFGKEMDRERYERVLEACSLKKDLEVL-PFGDQT 474
C K Y ++ I GK +IL +D E E S+K+ L+VL G
Sbjct: 742 ---CKGKRYNRETLEITYKGKNISDIL-DMTVD-EALEFFKNIPSIKRTLQVLHDVGLGY 796
Query: 475 I-IGERGINLSGGQKQRIQIARPLYQ---DADIFLLDDPFSPVDDHTGAHLFKFC--WVS 528
+ +G+ LSGG+ QRI++A L + +++LD+P + L + V
Sbjct: 797 VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD 856
Query: 529 SSKTVIYATHQVEFLPAADLIL 550
TVI H ++ + AD I+
Sbjct: 857 RGNTVIVIEHNLDVIKNADHII 878
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL-----------IDGKDISLIGLHDLRTRL 1010
P+V+ G +G+GKSTL++ LF + G + ++GKD + + + + ++ +
Sbjct: 19 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMI 78
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 30/197 (15%)
Query: 393 GTVGSGKSSCLSCILG-----------GVPKES-GIIRLCGTKAYVAQSPWIQSGKIEEN 440
G G+GKS+ L+ + G G P E+ +L +AY++Q +
Sbjct: 33 GPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92
Query: 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ- 499
L + D+ R E + + L D+ +G LSGG+ QR+++A + Q
Sbjct: 93 YLTLHQHDKTRTELLNDVAG------ALALDDK--LGRSTNQLSGGEWQRVRLAAVVLQI 144
Query: 500 ------DADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--TVIYATHQVEF-LPAADLIL 550
+ LLD P + +D + L K S + ++ ++H + L A
Sbjct: 145 TPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAW 204
Query: 551 VIKDGKITQAGKYSDIL 567
++K GK+ +G+ ++L
Sbjct: 205 LLKGGKMLASGRREEVL 221
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL-----------IDGKDISLIGLHDLRTRL 1010
P+V+ G +G+GKSTL++ LF + G + ++GKD + + + + ++ +
Sbjct: 4 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMI 63
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex With
Guanosine-5'-Monophosphate
Length = 186
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 11/60 (18%)
Query: 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL-----------IDGKDISLIGLHDLRTRL 1010
P+V+ G +G+GKSTL++ LF + G + ++GKD + + + + ++ +
Sbjct: 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMI 62
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 30/197 (15%)
Query: 393 GTVGSGKSSCLSCILG-----------GVPKES-GIIRLCGTKAYVAQSPWIQSGKIEEN 440
G G+GKS+ L+ + G G P E+ +L +AY++Q +
Sbjct: 33 GPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92
Query: 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ- 499
L + D+ R E + + L D+ +G LSGG+ QR+++A + Q
Sbjct: 93 YLTLHQHDKTRTELLNDVAG------ALALDDK--LGRSTNQLSGGEWQRVRLAAVVLQI 144
Query: 500 ------DADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--TVIYATHQVEF-LPAADLIL 550
+ LLD P +D + L K S + ++ ++H + L A
Sbjct: 145 TPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAW 204
Query: 551 VIKDGKITQAGKYSDIL 567
++K GK+ +G+ ++L
Sbjct: 205 LLKGGKMLASGRREEVL 221
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 17/86 (19%)
Query: 476 IGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFSPVDDHTGAHLFKF-------- 524
+G+ LSGG+ QR+++A L + + +++LD+P TG H
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPT------TGLHFDDIRKLLNVIN 910
Query: 525 CWVSSSKTVIYATHQVEFLPAADLIL 550
V TVI H ++ + +D I+
Sbjct: 911 GLVDKGNTVIVIEHNLDVIKTSDWII 936
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,478,683
Number of Sequences: 62578
Number of extensions: 1267301
Number of successful extensions: 2993
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2610
Number of HSP's gapped (non-prelim): 272
length of query: 1156
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1047
effective length of database: 8,152,335
effective search space: 8535494745
effective search space used: 8535494745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)