Query 037346
Match_columns 1156
No_of_seqs 649 out of 4786
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-152 1E-156 1511.7 92.9 1122 23-1155 2-1320(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2E-125 6E-130 1252.0 87.6 1063 78-1153 45-1272(1284)
3 4a82_A Cystic fibrosis transme 100.0 8.4E-69 2.9E-73 659.6 58.0 505 73-578 6-574 (578)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.5E-68 5.2E-73 657.2 58.7 511 69-580 11-578 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 7.8E-68 2.7E-72 652.9 52.1 504 75-581 31-591 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 7E-66 2.4E-70 634.7 65.9 502 73-579 17-578 (582)
7 3b60_A Lipid A export ATP-bind 100.0 5.4E-66 1.9E-70 635.7 61.5 501 74-579 18-578 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.1E-65 3.7E-70 634.7 59.2 506 74-579 12-582 (595)
9 4f4c_A Multidrug resistance pr 100.0 1.3E-65 4.5E-70 681.6 50.1 433 712-1152 163-654 (1321)
10 3qf4_B Uncharacterized ABC tra 100.0 3.7E-63 1.3E-67 611.3 43.4 431 712-1152 104-591 (598)
11 3qf4_A ABC transporter, ATP-bi 100.0 2.3E-63 7.7E-68 611.3 41.0 432 712-1152 90-579 (587)
12 3b5x_A Lipid A export ATP-bind 100.0 8.3E-61 2.8E-65 589.6 52.0 430 712-1152 92-580 (582)
13 3b60_A Lipid A export ATP-bind 100.0 5.6E-61 1.9E-65 591.1 48.0 430 712-1152 92-580 (582)
14 4a82_A Cystic fibrosis transme 100.0 1.3E-61 4.4E-66 595.7 40.0 431 712-1151 88-576 (578)
15 2yl4_A ATP-binding cassette SU 100.0 8.3E-60 2.8E-64 582.2 48.3 433 712-1152 89-584 (595)
16 3g5u_A MCG1178, multidrug resi 100.0 1.4E-61 4.9E-66 641.5 33.2 433 712-1152 135-626 (1284)
17 3bk7_A ABC transporter ATP-bin 100.0 6.1E-56 2.1E-60 542.0 17.9 426 357-1138 83-563 (607)
18 2iw3_A Elongation factor 3A; a 100.0 9.9E-54 3.4E-58 536.6 33.2 195 356-568 434-635 (986)
19 1yqt_A RNAse L inhibitor; ATP- 100.0 1.3E-55 4.4E-60 534.5 15.3 178 948-1138 300-493 (538)
20 3ux8_A Excinuclease ABC, A sub 100.0 1E-53 3.6E-58 535.4 24.1 187 372-568 30-298 (670)
21 3nh6_A ATP-binding cassette SU 100.0 7.6E-53 2.6E-57 471.5 22.5 261 319-581 15-290 (306)
22 3ozx_A RNAse L inhibitor; ATP 100.0 6.8E-53 2.3E-57 508.8 16.8 179 947-1137 281-476 (538)
23 3j16_B RLI1P; ribosome recycli 100.0 2.8E-52 9.7E-57 508.3 19.3 178 949-1139 362-560 (608)
24 3nh6_A ATP-binding cassette SU 100.0 5.7E-49 1.9E-53 440.2 16.9 243 907-1153 16-291 (306)
25 2pze_A Cystic fibrosis transme 100.0 9.3E-47 3.2E-51 408.3 25.1 218 356-574 5-224 (229)
26 2cbz_A Multidrug resistance-as 100.0 1.6E-46 5.5E-51 408.3 25.1 221 357-578 3-227 (237)
27 2ff7_A Alpha-hemolysin translo 100.0 1.9E-45 6.4E-50 402.2 27.7 222 356-578 6-243 (247)
28 2ghi_A Transport protein; mult 100.0 5.9E-45 2E-49 401.3 27.9 223 356-579 16-253 (260)
29 1mv5_A LMRA, multidrug resista 100.0 2E-45 6.7E-50 401.9 19.0 218 358-577 2-235 (243)
30 2ixe_A Antigen peptide transpo 100.0 1.8E-44 6.2E-49 399.6 25.4 223 356-578 15-255 (271)
31 3gd7_A Fusion complex of cysti 100.0 1.8E-43 6.1E-48 407.9 24.2 214 355-570 17-244 (390)
32 2bbs_A Cystic fibrosis transme 100.0 1.1E-43 3.8E-48 395.7 21.6 230 331-569 17-248 (290)
33 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-42 4.4E-47 384.1 22.4 201 356-569 6-234 (275)
34 3tui_C Methionine import ATP-b 100.0 1E-42 3.5E-47 395.3 20.6 205 355-570 22-255 (366)
35 3tif_A Uncharacterized ABC tra 100.0 8.3E-43 2.8E-47 378.6 17.9 199 358-566 2-232 (235)
36 3fvq_A Fe(3+) IONS import ATP- 100.0 3.6E-42 1.2E-46 391.0 23.0 201 357-571 4-231 (359)
37 3rlf_A Maltose/maltodextrin im 100.0 6.4E-42 2.2E-46 391.4 19.3 200 357-570 3-225 (381)
38 2olj_A Amino acid ABC transpor 100.0 1.7E-41 5.8E-46 373.1 21.9 199 357-569 24-249 (263)
39 2pcj_A ABC transporter, lipopr 100.0 1.2E-41 4E-46 367.0 18.1 192 357-562 4-222 (224)
40 1ji0_A ABC transporter; ATP bi 100.0 1.9E-41 6.4E-46 369.4 19.7 198 357-568 6-228 (240)
41 4g1u_C Hemin import ATP-bindin 100.0 2.3E-41 8E-46 373.3 20.7 199 356-568 10-237 (266)
42 1g6h_A High-affinity branched- 100.0 3E-41 1E-45 371.7 21.5 195 357-565 7-239 (257)
43 2yz2_A Putative ABC transporte 100.0 8.3E-41 2.8E-45 369.8 24.6 202 357-569 2-228 (266)
44 1b0u_A Histidine permease; ABC 100.0 3.5E-41 1.2E-45 371.7 21.2 199 357-569 6-243 (262)
45 1vpl_A ABC transporter, ATP-bi 100.0 5.2E-41 1.8E-45 368.0 21.4 199 356-568 14-235 (256)
46 1z47_A CYSA, putative ABC-tran 100.0 3.5E-41 1.2E-45 383.4 19.9 202 356-570 13-237 (355)
47 2yyz_A Sugar ABC transporter, 100.0 5.4E-41 1.8E-45 383.0 21.4 200 357-570 3-225 (359)
48 2it1_A 362AA long hypothetical 100.0 6.1E-41 2.1E-45 383.0 18.4 200 357-570 3-225 (362)
49 1v43_A Sugar-binding transport 100.0 1.2E-40 3.9E-45 382.1 20.7 200 357-570 11-233 (372)
50 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-40 3.9E-45 379.2 20.4 198 358-570 2-219 (348)
51 2onk_A Molybdate/tungstate ABC 100.0 1.1E-40 3.7E-45 362.3 19.2 195 358-569 2-217 (240)
52 1oxx_K GLCV, glucose, ABC tran 100.0 8.7E-41 3E-45 381.9 19.3 200 357-570 3-232 (353)
53 2nq2_C Hypothetical ABC transp 100.0 1.5E-40 5.1E-45 364.4 19.9 198 357-568 4-217 (253)
54 2vf7_A UVRA2, excinuclease ABC 100.0 1.2E-39 4.1E-44 406.7 30.1 200 950-1149 513-838 (842)
55 2ihy_A ABC transporter, ATP-bi 100.0 9.9E-41 3.4E-45 370.6 17.7 199 356-568 20-252 (279)
56 1g29_1 MALK, maltose transport 100.0 2E-40 6.8E-45 381.1 19.6 200 357-570 3-231 (372)
57 2ff7_A Alpha-hemolysin translo 100.0 1.4E-39 4.8E-44 355.7 23.3 204 948-1151 23-245 (247)
58 2pjz_A Hypothetical protein ST 100.0 5.5E-40 1.9E-44 361.0 20.0 196 358-568 2-215 (263)
59 2qi9_C Vitamin B12 import ATP- 100.0 9.8E-40 3.4E-44 356.4 20.9 193 357-568 4-222 (249)
60 3pih_A Uvrabc system protein A 100.0 6.8E-40 2.3E-44 412.0 22.4 199 950-1148 600-912 (916)
61 2d2e_A SUFC protein; ABC-ATPas 100.0 3E-39 1E-43 354.2 20.6 194 357-564 3-229 (250)
62 2zu0_C Probable ATP-dependent 100.0 4E-39 1.4E-43 356.3 20.8 199 356-567 19-253 (267)
63 1sgw_A Putative ABC transporte 100.0 5.9E-39 2E-43 341.8 14.8 185 356-557 9-210 (214)
64 2ghi_A Transport protein; mult 100.0 3E-38 1E-42 347.9 20.6 203 949-1153 35-256 (260)
65 1mv5_A LMRA, multidrug resista 100.0 4.7E-39 1.6E-43 351.4 13.5 203 949-1152 17-239 (243)
66 3gd7_A Fusion complex of cysti 100.0 2.2E-38 7.6E-43 365.4 19.2 207 939-1146 11-250 (390)
67 2ixe_A Antigen peptide transpo 100.0 4.8E-38 1.6E-42 348.1 18.6 201 950-1151 35-257 (271)
68 2r6f_A Excinuclease ABC subuni 100.0 2.9E-36 9.8E-41 375.1 24.4 193 950-1142 640-946 (972)
69 2ygr_A Uvrabc system protein A 100.0 2.2E-35 7.7E-40 368.5 26.5 193 950-1142 658-964 (993)
70 3tui_C Methionine import ATP-b 100.0 6.8E-36 2.3E-40 339.4 18.2 196 951-1146 45-261 (366)
71 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-35 3.6E-40 328.8 15.0 192 948-1139 22-234 (275)
72 3tif_A Uncharacterized ABC tra 100.0 1.5E-35 5.1E-40 321.6 15.3 190 948-1137 19-233 (235)
73 2cbz_A Multidrug resistance-as 100.0 2.6E-35 8.9E-40 320.1 15.9 190 948-1151 19-229 (237)
74 2olj_A Amino acid ABC transpor 100.0 9.1E-35 3.1E-39 319.5 18.0 196 949-1144 39-254 (263)
75 4g1u_C Hemin import ATP-bindin 100.0 7.7E-35 2.6E-39 321.2 15.8 192 947-1138 24-237 (266)
76 2pze_A Cystic fibrosis transme 100.0 1.1E-34 3.6E-39 313.8 16.2 187 948-1148 22-227 (229)
77 3fvq_A Fe(3+) IONS import ATP- 100.0 1.8E-34 6.1E-39 327.9 18.2 201 947-1147 17-237 (359)
78 2onk_A Molybdate/tungstate ABC 100.0 8.8E-35 3E-39 315.8 14.8 188 950-1140 15-218 (240)
79 1vpl_A ABC transporter, ATP-bi 100.0 2.1E-34 7.1E-39 315.7 17.3 189 949-1138 30-235 (256)
80 1b0u_A Histidine permease; ABC 100.0 2.7E-34 9.3E-39 316.7 17.5 197 948-1144 20-248 (262)
81 1ji0_A ABC transporter; ATP bi 100.0 1.4E-34 4.9E-39 315.1 15.1 191 948-1138 20-228 (240)
82 3rlf_A Maltose/maltodextrin im 100.0 1.7E-34 5.9E-39 330.1 16.4 198 947-1146 16-231 (381)
83 2yz2_A Putative ABC transporte 100.0 2.8E-34 9.7E-39 317.5 17.5 191 947-1140 20-229 (266)
84 2qi9_C Vitamin B12 import ATP- 100.0 1.9E-34 6.6E-39 314.6 15.3 189 949-1138 15-222 (249)
85 2yyz_A Sugar ABC transporter, 100.0 6.6E-34 2.3E-38 324.5 18.1 196 948-1145 17-230 (359)
86 1g6h_A High-affinity branched- 100.0 5.1E-34 1.7E-38 314.1 16.1 187 949-1135 22-239 (257)
87 1v43_A Sugar-binding transport 100.0 1.4E-33 4.8E-38 323.4 19.9 196 948-1145 25-238 (372)
88 1z47_A CYSA, putative ABC-tran 100.0 4.3E-34 1.5E-38 325.1 14.6 194 949-1144 30-241 (355)
89 2ihy_A ABC transporter, ATP-bi 100.0 4.5E-34 1.5E-38 317.0 14.4 190 949-1138 36-252 (279)
90 3d31_A Sulfate/molybdate ABC t 100.0 7E-34 2.4E-38 323.4 16.3 195 949-1145 15-224 (348)
91 2pcj_A ABC transporter, lipopr 100.0 3.9E-34 1.3E-38 308.3 13.1 186 947-1132 17-222 (224)
92 2it1_A 362AA long hypothetical 100.0 5.6E-34 1.9E-38 325.5 15.1 196 948-1145 17-230 (362)
93 1oxx_K GLCV, glucose, ABC tran 100.0 5E-34 1.7E-38 326.0 13.6 197 949-1145 20-237 (353)
94 2d2e_A SUFC protein; ABC-ATPas 100.0 4.1E-33 1.4E-37 305.5 17.4 189 947-1135 16-230 (250)
95 1g29_1 MALK, maltose transport 100.0 2.5E-33 8.5E-38 322.2 14.0 196 948-1145 17-236 (372)
96 3bk7_A ABC transporter ATP-bin 100.0 6.1E-33 2.1E-37 339.1 15.5 198 356-568 356-563 (607)
97 2pjz_A Hypothetical protein ST 100.0 7.9E-33 2.7E-37 304.1 14.6 184 947-1138 18-215 (263)
98 2zu0_C Probable ATP-dependent 100.0 3.4E-33 1.2E-37 308.8 11.7 190 949-1138 35-254 (267)
99 1yqt_A RNAse L inhibitor; ATP- 100.0 6.1E-33 2.1E-37 336.1 13.9 198 356-568 286-493 (538)
100 2bbs_A Cystic fibrosis transme 100.0 1E-32 3.4E-37 307.4 14.4 183 949-1146 53-254 (290)
101 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-32 1.5E-36 327.3 15.5 197 356-567 268-476 (538)
102 2iw3_A Elongation factor 3A; a 100.0 6.1E-32 2.1E-36 339.6 15.8 195 357-562 671-981 (986)
103 2nq2_C Hypothetical ABC transp 100.0 4.9E-32 1.7E-36 296.8 11.6 177 948-1138 19-217 (253)
104 3j16_B RLI1P; ribosome recycli 100.0 9.5E-32 3.3E-36 327.7 13.9 196 361-569 350-560 (608)
105 1sgw_A Putative ABC transporte 100.0 2.7E-31 9.2E-36 282.7 9.9 175 948-1128 23-211 (214)
106 2v9p_A Replication protein E1; 100.0 3.1E-34 1E-38 319.6 -19.9 222 294-566 41-264 (305)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-28 7.8E-33 306.0 16.6 128 435-572 505-644 (670)
108 1tf7_A KAIC; homohexamer, hexa 99.9 7.3E-30 2.5E-34 310.5 -4.6 155 372-556 24-211 (525)
109 3pih_A Uvrabc system protein A 99.9 5.7E-27 1.9E-31 295.0 20.7 129 436-574 768-908 (916)
110 2vf7_A UVRA2, excinuclease ABC 99.9 2.1E-26 7.1E-31 287.6 16.3 95 476-570 724-829 (842)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-29 4.8E-34 299.5 -12.3 185 358-568 119-338 (460)
112 2r6f_A Excinuclease ABC subuni 99.9 3.9E-26 1.3E-30 284.3 16.8 98 476-573 839-947 (972)
113 2ygr_A Uvrabc system protein A 99.9 1.4E-25 4.9E-30 280.5 19.8 98 476-573 857-965 (993)
114 4aby_A DNA repair protein RECN 99.9 2.5E-25 8.5E-30 263.8 12.4 78 483-560 296-380 (415)
115 2v9p_A Replication protein E1; 99.9 2.2E-27 7.5E-32 264.4 -12.1 195 907-1152 66-276 (305)
116 1e69_A Chromosome segregation 99.9 1.2E-22 3.9E-27 231.7 14.6 180 377-557 16-301 (322)
117 3b85_A Phosphate starvation-in 99.9 1.2E-24 4.1E-29 230.8 -3.6 138 373-555 13-170 (208)
118 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4.1E-23 1.4E-27 238.8 8.6 83 477-559 274-364 (365)
119 4gp7_A Metallophosphoesterase; 99.9 2.9E-23 1E-27 214.2 2.9 146 378-549 1-168 (171)
120 4aby_A DNA repair protein RECN 99.8 8.7E-22 3E-26 233.3 8.6 181 950-1131 51-381 (415)
121 2npi_A Protein CLP1; CLP1-PCF1 99.8 2.1E-23 7.1E-28 246.7 -8.8 165 958-1138 136-338 (460)
122 1ye8_A Protein THEP1, hypothet 99.8 5.1E-22 1.8E-26 205.6 2.4 139 388-559 2-159 (178)
123 1tq4_A IIGP1, interferon-induc 99.8 4.3E-23 1.5E-27 239.5 -7.9 155 373-542 36-237 (413)
124 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.4E-23 4.8E-28 238.9 -16.7 134 374-557 159-292 (330)
125 1z6g_A Guanylate kinase; struc 99.8 1.1E-22 3.7E-27 218.5 -10.2 153 374-554 11-193 (218)
126 3aez_A Pantothenate kinase; tr 99.8 4E-22 1.4E-26 224.7 -7.2 166 326-515 15-209 (312)
127 3b85_A Phosphate starvation-in 99.8 1.5E-20 5.1E-25 199.3 3.2 144 958-1127 20-172 (208)
128 2dpy_A FLII, flagellum-specifi 99.8 6.6E-21 2.3E-25 224.2 -4.7 180 356-567 130-343 (438)
129 2o5v_A DNA replication and rep 99.8 7.3E-19 2.5E-23 201.0 11.4 81 482-566 265-354 (359)
130 3b9q_A Chloroplast SRP recepto 99.7 2.2E-20 7.6E-25 209.5 -4.4 161 377-557 91-284 (302)
131 1e69_A Chromosome segregation 99.7 2.6E-18 9E-23 195.7 11.6 183 953-1136 18-311 (322)
132 1lvg_A Guanylate kinase, GMP k 99.7 1.2E-20 4E-25 199.5 -7.5 151 959-1124 3-173 (198)
133 3sop_A Neuronal-specific septi 99.7 4.5E-20 1.5E-24 203.9 -3.4 135 388-543 4-153 (270)
134 1z6g_A Guanylate kinase; struc 99.7 7.8E-20 2.7E-24 196.2 -2.1 163 948-1124 11-193 (218)
135 3qkt_A DNA double-strand break 99.7 2.7E-17 9.4E-22 188.6 15.1 79 478-556 244-332 (339)
136 2og2_A Putative signal recogni 99.7 1.8E-19 6E-24 205.6 -3.7 161 377-557 148-341 (359)
137 1znw_A Guanylate kinase, GMP k 99.7 4.3E-20 1.5E-24 196.8 -10.8 164 373-553 9-202 (207)
138 2o8b_B DNA mismatch repair pro 99.7 6.7E-18 2.3E-22 216.8 5.8 169 356-563 749-937 (1022)
139 2obl_A ESCN; ATPase, hydrolase 99.7 2.3E-18 8E-23 196.5 0.5 193 356-566 44-253 (347)
140 1tf7_A KAIC; homohexamer, hexa 99.7 5.6E-17 1.9E-21 197.1 9.9 151 380-556 275-444 (525)
141 2eyu_A Twitching motility prot 99.7 8.3E-18 2.8E-22 184.8 1.4 131 374-554 15-147 (261)
142 1znw_A Guanylate kinase, GMP k 99.7 4.6E-19 1.6E-23 188.8 -8.3 161 956-1124 16-203 (207)
143 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.3E-18 7.9E-23 195.9 -3.5 135 951-1135 162-300 (330)
144 3thx_A DNA mismatch repair pro 99.7 3.6E-17 1.2E-21 207.3 6.3 166 356-566 630-811 (934)
145 2i3b_A HCR-ntpase, human cance 99.7 3E-18 1E-22 178.8 -3.6 147 386-560 1-168 (189)
146 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 6.4E-16 2.2E-20 178.5 14.6 67 1063-1129 291-364 (365)
147 1ye8_A Protein THEP1, hypothet 99.6 8.2E-18 2.8E-22 174.0 -2.2 140 963-1130 3-160 (178)
148 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 5.7E-16 1.9E-20 154.3 10.4 81 477-557 52-142 (148)
149 3sop_A Neuronal-specific septi 99.6 6.6E-17 2.3E-21 178.5 3.3 143 963-1115 5-155 (270)
150 2jeo_A Uridine-cytidine kinase 99.6 4.4E-17 1.5E-21 178.2 0.7 163 371-567 10-186 (245)
151 1cr0_A DNA primase/helicase; R 99.6 1E-16 3.5E-21 180.6 3.6 166 373-557 22-237 (296)
152 4gp7_A Metallophosphoesterase; 99.6 3.3E-17 1.1E-21 168.8 -0.4 141 952-1119 1-168 (171)
153 3b9q_A Chloroplast SRP recepto 99.6 7.9E-18 2.7E-22 188.8 -6.0 163 958-1128 98-285 (302)
154 1tq4_A IIGP1, interferon-induc 99.6 3.5E-18 1.2E-22 198.3 -9.2 161 949-1120 38-248 (413)
155 1ewq_A DNA mismatch repair pro 99.6 1.6E-16 5.3E-21 198.2 4.9 144 356-546 549-704 (765)
156 3asz_A Uridine kinase; cytidin 99.6 1E-17 3.5E-22 178.9 -6.9 138 383-540 3-161 (211)
157 4a74_A DNA repair and recombin 99.6 3.1E-16 1E-20 169.6 3.9 150 382-555 21-200 (231)
158 2i3b_A HCR-ntpase, human cance 99.6 8.2E-17 2.8E-21 167.9 -2.4 163 961-1151 2-184 (189)
159 3thx_B DNA mismatch repair pro 99.6 5.1E-16 1.7E-20 196.1 4.1 157 357-549 640-805 (918)
160 1w1w_A Structural maintenance 99.6 1.3E-14 4.5E-19 172.0 15.2 72 482-553 333-410 (430)
161 2og2_A Putative signal recogni 99.6 4.2E-17 1.4E-21 186.0 -6.3 163 958-1128 155-342 (359)
162 1pzn_A RAD51, DNA repair and r 99.6 6.7E-16 2.3E-20 177.1 2.6 155 374-563 118-310 (349)
163 2qnr_A Septin-2, protein NEDD5 99.5 1.9E-16 6.4E-21 178.1 -2.7 153 361-541 2-168 (301)
164 2eyu_A Twitching motility prot 99.5 7.9E-16 2.7E-20 169.0 2.2 130 949-1123 16-146 (261)
165 2dpy_A FLII, flagellum-specifi 99.5 7.9E-18 2.7E-22 198.0 -14.7 175 949-1138 147-344 (438)
166 2ewv_A Twitching motility prot 99.5 2.1E-17 7E-22 191.2 -11.6 165 374-542 126-353 (372)
167 2ehv_A Hypothetical protein PH 99.5 1.2E-15 4E-20 167.2 1.9 175 358-554 7-207 (251)
168 3jvv_A Twitching mobility prot 99.5 1.6E-15 5.6E-20 173.5 2.9 147 361-555 92-246 (356)
169 2ehv_A Hypothetical protein PH 99.5 1.4E-15 4.7E-20 166.7 1.6 160 958-1124 28-207 (251)
170 2f1r_A Molybdopterin-guanine d 99.5 5.8E-17 2E-21 165.9 -9.1 98 387-504 3-125 (171)
171 2ewv_A Twitching motility prot 99.5 2.3E-16 7.7E-21 182.5 -5.3 150 959-1112 135-353 (372)
172 3szr_A Interferon-induced GTP- 99.5 1.5E-15 5.2E-20 186.7 1.2 178 947-1137 10-236 (608)
173 1pui_A ENGB, probable GTP-bind 99.5 6.5E-16 2.2E-20 164.5 -3.3 154 357-527 3-195 (210)
174 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.8E-14 6.3E-19 155.7 7.9 165 373-555 9-192 (235)
175 1pzn_A RAD51, DNA repair and r 99.5 7.2E-15 2.5E-19 168.5 3.2 166 956-1137 127-314 (349)
176 4a74_A DNA repair and recombin 99.5 1.7E-14 5.9E-19 155.8 5.2 150 958-1125 23-200 (231)
177 1lw7_A Transcriptional regulat 99.5 1.4E-16 4.8E-21 184.7 -12.3 165 960-1138 170-355 (365)
178 2qag_C Septin-7; cell cycle, c 99.5 1.2E-14 4.2E-19 169.2 3.6 156 356-543 10-180 (418)
179 3kta_B Chromosome segregation 99.5 9.4E-14 3.2E-18 142.0 9.2 79 479-557 61-146 (173)
180 3szr_A Interferon-induced GTP- 99.5 1.4E-15 4.8E-20 186.9 -5.4 174 357-565 10-234 (608)
181 1rj9_A FTSY, signal recognitio 99.5 2.4E-14 8.2E-19 160.5 5.0 138 385-542 101-260 (304)
182 1cr0_A DNA primase/helicase; R 99.4 4.5E-15 1.5E-19 167.1 -1.4 170 949-1127 24-237 (296)
183 1wb9_A DNA mismatch repair pro 99.4 2E-14 6.7E-19 180.4 3.3 148 372-560 594-750 (800)
184 3aez_A Pantothenate kinase; tr 99.4 6.5E-14 2.2E-18 157.6 6.5 139 962-1125 92-245 (312)
185 1s96_A Guanylate kinase, GMP k 99.4 1.6E-14 5.6E-19 154.2 1.1 137 958-1138 14-160 (219)
186 1lw7_A Transcriptional regulat 99.4 7.2E-16 2.5E-20 178.8 -10.6 71 375-445 157-248 (365)
187 1nlf_A Regulatory protein REPA 99.4 9.6E-14 3.3E-18 154.8 6.8 144 382-543 26-184 (279)
188 3asz_A Uridine kinase; cytidin 99.4 6.8E-15 2.3E-19 156.9 -2.8 129 960-1110 6-161 (211)
189 2o8b_B DNA mismatch repair pro 99.4 4E-14 1.4E-18 181.9 3.5 155 949-1135 771-939 (1022)
190 2o5v_A DNA replication and rep 99.4 1E-13 3.5E-18 158.4 6.1 70 1063-1137 277-355 (359)
191 1odf_A YGR205W, hypothetical 3 99.4 1.5E-15 5.2E-20 169.2 -8.9 120 384-517 29-169 (290)
192 3jvv_A Twitching mobility prot 99.4 6.1E-14 2.1E-18 160.4 4.1 119 964-1125 127-246 (356)
193 2qag_B Septin-6, protein NEDD5 99.4 1.3E-13 4.4E-18 159.7 5.8 171 357-538 16-217 (427)
194 2gza_A Type IV secretion syste 99.4 2.2E-16 7.6E-21 182.1 -19.7 199 291-496 63-301 (361)
195 1lvg_A Guanylate kinase, GMP k 99.4 1.9E-15 6.5E-20 159.5 -12.0 147 384-554 2-173 (198)
196 1s96_A Guanylate kinase, GMP k 99.3 4.4E-14 1.5E-18 150.9 -1.9 134 381-568 11-160 (219)
197 2f1r_A Molybdopterin-guanine d 99.3 8.4E-14 2.9E-18 142.4 0.1 93 963-1072 5-124 (171)
198 2gza_A Type IV secretion syste 99.3 8.7E-14 3E-18 160.4 -1.6 125 959-1126 174-303 (361)
199 3thx_A DNA mismatch repair pro 99.3 2.7E-13 9.3E-18 171.9 2.1 151 946-1137 648-812 (934)
200 1zp6_A Hypothetical protein AT 99.3 3E-13 1E-17 141.6 2.1 125 382-525 5-144 (191)
201 4ad8_A DNA repair protein RECN 99.3 7.9E-13 2.7E-17 160.2 5.8 77 480-556 394-474 (517)
202 1rj9_A FTSY, signal recognitio 99.3 1.5E-12 5E-17 145.9 6.4 157 960-1126 102-284 (304)
203 2cvh_A DNA repair and recombin 99.3 5.3E-12 1.8E-16 135.0 10.3 148 374-555 7-185 (220)
204 3qkt_A DNA double-strand break 99.3 2.1E-11 7.2E-16 139.6 15.2 61 1063-1123 266-327 (339)
205 2w0m_A SSO2452; RECA, SSPF, un 99.3 2.1E-12 7.1E-17 139.5 6.4 148 958-1126 21-193 (235)
206 2qag_C Septin-7; cell cycle, c 99.3 1.6E-12 5.6E-17 151.4 5.8 158 947-1113 11-180 (418)
207 2obl_A ESCN; ATPase, hydrolase 99.3 1.8E-13 6.1E-18 156.2 -2.8 161 955-1138 66-255 (347)
208 4ad8_A DNA repair protein RECN 99.3 9.9E-13 3.4E-17 159.4 3.2 63 1063-1125 409-473 (517)
209 3c8u_A Fructokinase; YP_612366 99.2 1.5E-13 5.3E-18 146.1 -4.5 115 383-510 19-140 (208)
210 1n0w_A DNA repair protein RAD5 99.2 4.5E-12 1.5E-16 137.9 6.9 146 958-1125 22-209 (243)
211 1ewq_A DNA mismatch repair pro 99.2 1.1E-12 3.7E-17 163.7 1.6 132 946-1116 565-704 (765)
212 1sxj_E Activator 1 40 kDa subu 99.2 8.8E-12 3E-16 143.8 8.9 134 963-1113 39-177 (354)
213 2jeo_A Uridine-cytidine kinase 99.2 3.6E-12 1.2E-16 139.1 3.4 160 946-1138 11-187 (245)
214 1htw_A HI0065; nucleotide-bind 99.2 2.9E-13 9.8E-18 136.6 -5.9 80 361-444 11-99 (158)
215 2cvh_A DNA repair and recombin 99.2 9.9E-12 3.4E-16 132.9 5.7 140 958-1125 18-185 (220)
216 2rcn_A Probable GTPase ENGC; Y 99.2 2.3E-12 7.9E-17 146.3 0.5 114 374-498 204-329 (358)
217 2bdt_A BH3686; alpha-beta prot 99.2 3.7E-14 1.3E-18 148.4 -13.6 161 386-566 2-182 (189)
218 3auy_A DNA double-strand break 99.2 4.9E-11 1.7E-15 138.3 11.2 74 480-553 278-359 (371)
219 1wb9_A DNA mismatch repair pro 99.2 6.9E-12 2.3E-16 157.4 2.8 150 947-1129 595-749 (800)
220 1pui_A ENGB, probable GTP-bind 99.1 2.3E-12 7.8E-17 136.9 -1.7 151 948-1098 4-197 (210)
221 1n0w_A DNA repair protein RAD5 99.1 3.4E-11 1.2E-15 130.8 7.4 143 382-555 20-209 (243)
222 1nij_A Hypothetical protein YJ 99.1 2E-12 6.9E-17 146.6 -3.4 141 387-541 5-190 (318)
223 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 1.5E-10 5.1E-15 115.1 8.7 64 1063-1126 75-141 (148)
224 2bbw_A Adenylate kinase 4, AK4 99.1 2.6E-12 9E-17 140.3 -4.5 134 385-525 26-193 (246)
225 1p9r_A General secretion pathw 99.1 6.4E-13 2.2E-17 155.0 -10.6 115 375-506 158-315 (418)
226 2yhs_A FTSY, cell division pro 99.1 5.7E-11 2E-15 139.0 5.5 141 376-538 283-447 (503)
227 2qm8_A GTPase/ATPase; G protei 99.1 2.1E-12 7.3E-17 147.3 -6.8 159 358-526 30-256 (337)
228 1nlf_A Regulatory protein REPA 99.1 4.9E-11 1.7E-15 132.8 3.9 146 957-1113 27-184 (279)
229 2qnr_A Septin-2, protein NEDD5 99.1 6.2E-11 2.1E-15 133.1 4.5 146 948-1112 12-169 (301)
230 1nij_A Hypothetical protein YJ 99.0 9E-12 3.1E-16 141.2 -2.7 134 963-1110 7-189 (318)
231 3lda_A DNA repair protein RAD5 99.0 1.1E-10 3.8E-15 135.3 6.2 147 958-1126 176-364 (400)
232 3e70_C DPA, signal recognition 99.0 6.2E-12 2.1E-16 142.2 -4.3 160 961-1128 130-307 (328)
233 2qag_B Septin-6, protein NEDD5 99.0 2.9E-11 1E-15 140.0 0.5 152 950-1109 30-218 (427)
234 1udx_A The GTP-binding protein 99.0 1.1E-10 3.7E-15 135.9 4.7 145 376-538 147-306 (416)
235 3ec2_A DNA replication protein 99.0 2.3E-10 8E-15 118.3 6.4 109 380-540 32-143 (180)
236 2oap_1 GSPE-2, type II secreti 99.0 2.3E-12 7.8E-17 154.3 -10.7 158 374-544 248-454 (511)
237 3thx_B DNA mismatch repair pro 99.0 7.8E-11 2.7E-15 149.0 2.2 134 947-1118 660-804 (918)
238 2bbw_A Adenylate kinase 4, AK4 99.0 1.7E-11 5.9E-16 133.8 -3.7 134 961-1098 28-197 (246)
239 2kjq_A DNAA-related protein; s 99.0 5.2E-10 1.8E-14 111.8 7.4 87 385-539 35-124 (149)
240 2kjq_A DNAA-related protein; s 99.0 4.6E-10 1.6E-14 112.2 6.8 86 959-1109 35-124 (149)
241 3lda_A DNA repair protein RAD5 99.0 4.8E-10 1.7E-14 129.9 7.1 148 382-555 174-363 (400)
242 2yhs_A FTSY, cell division pro 98.9 4.9E-10 1.7E-14 131.2 5.1 75 955-1029 288-369 (503)
243 3e70_C DPA, signal recognition 98.9 7.8E-10 2.7E-14 125.0 6.1 134 382-539 125-278 (328)
244 1sxj_E Activator 1 40 kDa subu 98.9 2.1E-09 7.2E-14 123.8 8.9 126 388-543 38-177 (354)
245 2yv5_A YJEQ protein; hydrolase 98.9 2.1E-10 7E-15 128.9 0.3 101 382-495 161-300 (302)
246 2x8a_A Nuclear valosin-contain 98.8 1.7E-11 5.8E-16 135.8 -10.1 131 374-526 34-191 (274)
247 2bdt_A BH3686; alpha-beta prot 98.8 1.1E-10 3.9E-15 121.7 -3.5 154 963-1137 5-183 (189)
248 3ec2_A DNA replication protein 98.8 1.5E-09 5E-14 112.3 4.7 105 960-1112 38-145 (180)
249 1sq5_A Pantothenate kinase; P- 98.8 5E-11 1.7E-15 134.5 -7.6 61 356-421 36-120 (308)
250 1odf_A YGR205W, hypothetical 3 98.8 1.1E-10 3.7E-15 129.9 -5.1 106 963-1086 34-169 (290)
251 3kta_B Chromosome segregation 98.8 7.1E-09 2.4E-13 105.8 7.6 64 1063-1126 76-145 (173)
252 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 7E-11 2.4E-15 136.2 -9.7 155 382-564 16-209 (392)
253 1htw_A HI0065; nucleotide-bind 98.7 4E-10 1.4E-14 113.6 -3.6 74 950-1029 23-96 (158)
254 1u0l_A Probable GTPase ENGC; p 98.7 6.8E-09 2.3E-13 116.5 5.4 97 960-1057 169-290 (301)
255 3c8u_A Fructokinase; YP_612366 98.7 1.4E-10 4.7E-15 123.2 -8.3 132 961-1111 23-184 (208)
256 3lnc_A Guanylate kinase, GMP k 98.7 6.4E-11 2.2E-15 127.9 -11.5 139 951-1097 18-176 (231)
257 1cke_A CK, MSSA, protein (cyti 98.7 2.1E-09 7.1E-14 115.5 -0.1 113 962-1080 7-151 (227)
258 1vma_A Cell division protein F 98.6 1.3E-08 4.4E-13 113.9 4.2 98 379-511 97-197 (306)
259 1t9h_A YLOQ, probable GTPase E 98.6 4.8E-09 1.6E-13 117.0 0.1 82 381-463 168-287 (307)
260 1zp6_A Hypothetical protein AT 98.6 3.7E-09 1.3E-13 110.3 -0.8 66 959-1029 8-73 (191)
261 1u0l_A Probable GTPase ENGC; p 98.6 9E-09 3.1E-13 115.5 2.1 88 381-469 164-289 (301)
262 4e22_A Cytidylate kinase; P-lo 98.6 5.3E-08 1.8E-12 106.4 7.2 90 959-1054 26-133 (252)
263 3euj_A Chromosome partition pr 98.6 1.9E-08 6.6E-13 118.4 3.6 48 374-422 18-65 (483)
264 3a00_A Guanylate kinase, GMP k 98.5 3.2E-08 1.1E-12 102.8 3.8 146 961-1123 2-169 (186)
265 2px0_A Flagellar biosynthesis 98.5 5.3E-08 1.8E-12 108.7 5.2 137 384-559 103-246 (296)
266 1ls1_A Signal recognition part 98.5 1.1E-07 3.7E-12 106.2 7.4 128 358-524 77-205 (295)
267 2dy1_A Elongation factor G; tr 98.5 1.4E-07 4.9E-12 117.0 7.8 127 960-1113 9-139 (665)
268 2yv5_A YJEQ protein; hydrolase 98.5 6.1E-08 2.1E-12 108.7 3.7 94 960-1056 165-285 (302)
269 1iy2_A ATP-dependent metallopr 98.4 1.3E-09 4.5E-14 121.1 -10.1 117 360-503 52-190 (278)
270 2px0_A Flagellar biosynthesis 98.4 3.4E-08 1.2E-12 110.2 1.3 134 961-1129 106-246 (296)
271 3auy_A DNA double-strand break 98.4 2.4E-07 8E-12 107.2 7.7 61 1063-1123 298-359 (371)
272 2dr3_A UPF0273 protein PH0284; 98.4 5E-07 1.7E-11 97.9 9.9 164 373-554 9-196 (247)
273 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 1.1E-09 3.8E-14 126.2 -11.9 159 959-1133 19-208 (392)
274 1in4_A RUVB, holliday junction 98.4 6.3E-10 2.2E-14 127.1 -13.9 80 359-442 20-123 (334)
275 1oix_A RAS-related protein RAB 98.4 2.8E-08 9.6E-13 103.6 -0.3 129 963-1096 32-188 (191)
276 3tr0_A Guanylate kinase, GMP k 98.4 3.3E-08 1.1E-12 104.2 0.2 59 380-442 1-73 (205)
277 1p9r_A General secretion pathw 98.4 4.7E-08 1.6E-12 114.0 1.2 111 962-1074 169-314 (418)
278 1ixz_A ATP-dependent metallopr 98.4 2.1E-09 7.1E-14 117.8 -10.2 124 358-510 26-171 (254)
279 3euj_A Chromosome partition pr 98.4 8.6E-08 2.9E-12 112.9 2.8 69 949-1018 19-95 (483)
280 2oap_1 GSPE-2, type II secreti 98.4 2.7E-08 9.3E-13 119.1 -2.1 151 960-1115 260-455 (511)
281 2rcn_A Probable GTPase ENGC; Y 98.4 1.6E-07 5.4E-12 106.7 4.2 95 960-1060 215-316 (358)
282 2dr3_A UPF0273 protein PH0284; 98.4 5.8E-07 2E-11 97.4 8.5 146 958-1124 21-196 (247)
283 3ney_A 55 kDa erythrocyte memb 98.3 7.5E-08 2.6E-12 100.1 1.0 79 959-1045 18-109 (197)
284 3lnc_A Guanylate kinase, GMP k 98.3 7.3E-08 2.5E-12 103.8 0.8 38 373-410 14-52 (231)
285 2x8a_A Nuclear valosin-contain 98.3 2.2E-08 7.4E-13 110.8 -3.9 126 963-1094 47-190 (274)
286 1kgd_A CASK, peripheral plasma 98.3 2.1E-07 7.3E-12 96.0 3.5 80 960-1045 5-95 (180)
287 1ls1_A Signal recognition part 98.3 2.2E-07 7.7E-12 103.6 3.6 118 959-1107 97-219 (295)
288 2qm8_A GTPase/ATPase; G protei 98.3 2.6E-08 8.9E-13 113.4 -4.5 63 959-1021 54-120 (337)
289 1oix_A RAS-related protein RAB 98.3 6.2E-08 2.1E-12 101.0 -1.3 128 388-526 31-187 (191)
290 3k1j_A LON protease, ATP-depen 98.3 1.1E-07 3.6E-12 117.4 0.1 138 373-525 47-225 (604)
291 1sq5_A Pantothenate kinase; P- 98.3 6.1E-07 2.1E-11 100.9 6.1 103 963-1084 83-199 (308)
292 2zr9_A Protein RECA, recombina 98.2 1.5E-06 5E-11 99.3 8.7 142 382-561 57-236 (349)
293 2zr9_A Protein RECA, recombina 98.2 2.9E-06 9.9E-11 96.8 11.2 141 958-1132 59-237 (349)
294 3tr0_A Guanylate kinase, GMP k 98.2 2.8E-07 9.6E-12 97.0 2.5 84 958-1045 5-96 (205)
295 1svm_A Large T antigen; AAA+ f 98.2 1.2E-08 3.9E-13 117.3 -9.0 128 374-511 157-312 (377)
296 2r6a_A DNAB helicase, replicat 98.2 1.2E-06 4.1E-11 104.1 7.6 166 374-557 191-401 (454)
297 1t9h_A YLOQ, probable GTPase E 98.2 1.4E-07 4.9E-12 105.0 -0.3 90 960-1051 173-288 (307)
298 3kta_A Chromosome segregation 98.2 5.9E-07 2E-11 92.6 3.0 86 377-463 18-137 (182)
299 2ius_A DNA translocase FTSK; n 98.2 3.7E-08 1.3E-12 116.9 -7.1 154 378-541 159-343 (512)
300 1w1w_A Structural maintenance 98.2 1.5E-06 5E-11 102.7 6.5 62 1063-1124 345-411 (430)
301 3a00_A Guanylate kinase, GMP k 98.1 2.1E-07 7.1E-12 96.6 -1.8 26 386-411 1-26 (186)
302 1qhl_A Protein (cell division 98.1 3.4E-07 1.2E-11 97.5 -0.2 69 948-1016 10-91 (227)
303 2ius_A DNA translocase FTSK; n 98.1 2.7E-06 9.1E-11 101.0 7.3 150 953-1111 160-343 (512)
304 1cke_A CK, MSSA, protein (cyti 98.1 5.9E-08 2E-12 104.1 -6.5 114 386-510 5-150 (227)
305 2f9l_A RAB11B, member RAS onco 98.1 1.2E-06 4.3E-11 91.6 3.5 128 963-1097 8-165 (199)
306 2ce7_A Cell division protein F 98.1 4.2E-06 1.4E-10 99.0 7.5 113 374-543 39-167 (476)
307 1jjv_A Dephospho-COA kinase; P 98.0 5.3E-06 1.8E-10 87.3 7.4 125 388-553 4-131 (206)
308 1udx_A The GTP-binding protein 98.0 2.3E-06 7.9E-11 99.5 4.9 142 949-1107 146-305 (416)
309 3nwj_A ATSK2; P loop, shikimat 98.0 5.3E-07 1.8E-11 97.7 -0.7 52 357-410 17-72 (250)
310 1qhl_A Protein (cell division 98.0 1.3E-07 4.6E-12 100.7 -6.0 55 357-422 9-63 (227)
311 2xau_A PRE-mRNA-splicing facto 98.0 2.3E-06 7.7E-11 108.0 3.2 144 382-544 105-256 (773)
312 1vma_A Cell division protein F 98.0 7.6E-06 2.6E-10 91.4 7.1 39 962-1000 106-144 (306)
313 4e22_A Cytidylate kinase; P-lo 97.9 4.9E-07 1.7E-11 98.6 -2.9 59 384-442 25-114 (252)
314 2r6a_A DNAB helicase, replicat 97.9 2.9E-06 9.8E-11 100.8 3.0 165 949-1128 192-402 (454)
315 3tqc_A Pantothenate kinase; bi 97.9 6.8E-07 2.3E-11 100.2 -2.7 126 374-515 74-211 (321)
316 3vaa_A Shikimate kinase, SK; s 97.9 3.9E-06 1.3E-10 87.9 3.2 45 366-410 5-49 (199)
317 3t34_A Dynamin-related protein 97.9 2E-05 6.7E-10 90.7 9.2 45 373-420 24-70 (360)
318 2f9l_A RAB11B, member RAS onco 97.9 1.3E-05 4.4E-10 83.7 6.8 34 491-526 130-163 (199)
319 2qtf_A Protein HFLX, GTP-bindi 97.9 6.1E-06 2.1E-10 94.7 4.5 128 388-526 181-349 (364)
320 4a1f_A DNAB helicase, replicat 97.8 1.4E-05 4.8E-10 90.1 6.6 128 374-538 34-164 (338)
321 2dhr_A FTSH; AAA+ protein, hex 97.8 8.2E-07 2.8E-11 105.7 -4.6 112 374-512 54-188 (499)
322 2e87_A Hypothetical protein PH 97.8 0.0001 3.5E-09 84.5 12.5 60 480-540 229-292 (357)
323 3uie_A Adenylyl-sulfate kinase 97.8 2.4E-06 8.1E-11 89.7 -1.2 49 372-421 11-61 (200)
324 2j41_A Guanylate kinase; GMP, 97.7 1.2E-05 4E-10 84.5 3.7 35 381-415 1-35 (207)
325 3k1j_A LON protease, ATP-depen 97.7 1.8E-05 6.1E-10 97.5 4.9 137 951-1096 51-227 (604)
326 2dy1_A Elongation factor G; tr 97.6 1.3E-05 4.3E-10 99.6 2.3 121 380-543 3-139 (665)
327 2qt1_A Nicotinamide riboside k 97.6 3.5E-05 1.2E-09 81.1 5.1 50 381-443 16-65 (207)
328 1iy2_A ATP-dependent metallopr 97.6 1.2E-06 3.9E-11 97.2 -7.3 65 963-1029 76-142 (278)
329 1kgd_A CASK, peripheral plasma 97.6 1.7E-05 5.8E-10 81.6 2.0 34 384-417 3-37 (180)
330 4eun_A Thermoresistant glucoki 97.6 1.8E-05 6.2E-10 82.8 2.0 59 958-1021 27-85 (200)
331 3uie_A Adenylyl-sulfate kinase 97.6 8.4E-06 2.9E-10 85.4 -0.8 39 960-999 25-65 (200)
332 4eun_A Thermoresistant glucoki 97.5 2.2E-05 7.7E-10 82.1 2.3 38 380-421 23-60 (200)
333 1in4_A RUVB, holliday junction 97.5 1.5E-06 5.2E-11 99.0 -7.5 67 961-1028 52-122 (334)
334 3ney_A 55 kDa erythrocyte memb 97.5 3.3E-05 1.1E-09 80.1 2.9 74 380-458 13-109 (197)
335 3ice_A Transcription terminati 97.5 2.1E-05 7.3E-10 88.5 1.4 53 356-410 132-198 (422)
336 3tau_A Guanylate kinase, GMP k 97.5 2.5E-05 8.6E-10 82.3 1.6 81 959-1045 7-98 (208)
337 3hr8_A Protein RECA; alpha and 97.5 0.00031 1.1E-08 79.7 10.5 35 382-416 57-91 (356)
338 2z4s_A Chromosomal replication 97.4 6.7E-05 2.3E-09 88.5 4.8 66 1069-1134 194-264 (440)
339 3bh0_A DNAB-like replicative h 97.4 0.00011 3.8E-09 82.6 6.3 131 373-538 55-189 (315)
340 2z43_A DNA repair and recombin 97.4 7.1E-05 2.4E-09 84.7 4.6 127 958-1110 105-258 (324)
341 2ce7_A Cell division protein F 97.4 0.00026 8.7E-09 83.7 8.6 60 1064-1123 103-184 (476)
342 2vp4_A Deoxynucleoside kinase; 97.4 1.7E-05 5.8E-10 85.1 -1.6 57 961-1021 21-87 (230)
343 2j41_A Guanylate kinase; GMP, 97.4 4.4E-05 1.5E-09 80.1 1.6 82 958-1045 4-96 (207)
344 2vp4_A Deoxynucleoside kinase; 97.3 7.3E-05 2.5E-09 80.1 2.9 38 380-421 14-51 (230)
345 3tau_A Guanylate kinase, GMP k 97.3 9.5E-05 3.3E-09 77.9 3.7 29 384-412 6-34 (208)
346 3kta_A Chromosome segregation 97.3 3.1E-05 1.1E-09 79.6 -0.1 98 952-1050 19-137 (182)
347 1rz3_A Hypothetical protein rb 97.3 4.6E-05 1.6E-09 79.8 1.1 38 382-419 18-55 (201)
348 3hr8_A Protein RECA; alpha and 97.3 0.00073 2.5E-08 76.7 10.5 135 958-1124 59-229 (356)
349 2qt1_A Nicotinamide riboside k 97.3 2.7E-05 9.3E-10 81.9 -1.2 41 963-1029 24-64 (207)
350 1fnn_A CDC6P, cell division co 97.2 0.00066 2.2E-08 78.4 9.9 121 385-541 41-170 (389)
351 1zu4_A FTSY; GTPase, signal re 97.2 5.8E-05 2E-09 84.9 0.6 45 376-420 95-139 (320)
352 3cr8_A Sulfate adenylyltranfer 97.2 3E-05 1E-09 93.3 -2.4 83 960-1047 369-468 (552)
353 1knq_A Gluconate kinase; ALFA/ 97.2 0.00012 4.2E-09 74.5 2.3 34 384-421 6-39 (175)
354 1v5w_A DMC1, meiotic recombina 97.2 0.0013 4.4E-08 74.8 11.0 133 382-540 118-274 (343)
355 3kl4_A SRP54, signal recogniti 97.1 0.00043 1.5E-08 80.6 6.6 38 963-1000 100-137 (433)
356 3tqc_A Pantothenate kinase; bi 97.1 0.00045 1.5E-08 77.3 6.3 31 963-993 95-127 (321)
357 3b9p_A CG5977-PA, isoform A; A 97.1 0.0013 4.3E-08 73.2 10.0 76 385-515 53-128 (297)
358 3cr8_A Sulfate adenylyltranfer 97.1 0.00011 3.6E-09 88.6 0.9 40 382-421 365-406 (552)
359 2z43_A DNA repair and recombin 97.1 0.0014 4.7E-08 74.0 10.1 133 382-540 103-258 (324)
360 2qtf_A Protein HFLX, GTP-bindi 97.1 0.00019 6.4E-09 82.3 2.9 128 960-1097 178-351 (364)
361 1zu4_A FTSY; GTPase, signal re 97.1 6.7E-05 2.3E-09 84.3 -0.9 58 959-1016 104-171 (320)
362 1fnn_A CDC6P, cell division co 97.1 0.00067 2.3E-08 78.4 7.6 115 963-1111 47-170 (389)
363 1knq_A Gluconate kinase; ALFA/ 97.0 0.00022 7.5E-09 72.6 2.1 51 962-1018 10-61 (175)
364 1ixz_A ATP-dependent metallopr 97.0 2.7E-05 9.1E-10 84.8 -5.2 65 963-1029 52-118 (254)
365 1v5w_A DMC1, meiotic recombina 97.0 0.0002 6.9E-09 81.5 1.8 130 959-1110 121-274 (343)
366 3lxx_A GTPase IMAP family memb 96.9 0.0037 1.3E-07 66.9 11.6 28 388-415 31-58 (239)
367 3kl4_A SRP54, signal recogniti 96.9 0.0014 4.8E-08 76.2 8.5 107 385-523 96-205 (433)
368 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00047 1.6E-08 68.4 3.8 30 377-407 15-44 (149)
369 1sxj_C Activator 1 40 kDa subu 96.9 0.0007 2.4E-08 77.0 5.2 103 963-1111 49-151 (340)
370 2qby_A CDC6 homolog 1, cell di 96.9 0.00066 2.3E-08 78.2 5.1 30 384-413 43-72 (386)
371 1ypw_A Transitional endoplasmi 96.8 0.0014 4.8E-08 83.1 8.3 57 958-1016 509-565 (806)
372 1kag_A SKI, shikimate kinase I 96.8 0.0004 1.4E-08 70.4 2.4 28 385-412 3-30 (173)
373 2p67_A LAO/AO transport system 96.8 0.00021 7.1E-09 81.4 0.1 45 374-418 44-88 (341)
374 1rz3_A Hypothetical protein rb 96.8 0.00035 1.2E-08 73.1 1.8 42 963-1004 25-66 (201)
375 1l8q_A Chromosomal replication 96.8 0.0013 4.6E-08 74.1 6.5 101 961-1109 38-140 (324)
376 2z4s_A Chromosomal replication 96.8 0.00061 2.1E-08 80.3 3.7 41 500-540 194-237 (440)
377 1njg_A DNA polymerase III subu 96.7 0.0014 4.7E-08 69.8 6.0 45 1068-1113 125-169 (250)
378 3r20_A Cytidylate kinase; stru 96.7 0.00031 1.1E-08 74.9 0.8 67 963-1029 12-96 (233)
379 4eaq_A DTMP kinase, thymidylat 96.7 0.00059 2E-08 72.9 3.0 42 375-417 12-56 (229)
380 2w58_A DNAI, primosome compone 96.7 0.00063 2.2E-08 70.9 3.1 30 961-990 55-84 (202)
381 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0002 6.8E-09 85.2 -0.9 65 963-1029 67-133 (499)
382 2pez_A Bifunctional 3'-phospho 96.7 0.0004 1.4E-08 71.0 1.3 31 384-415 3-33 (179)
383 1ypw_A Transitional endoplasmi 96.6 0.00091 3.1E-08 84.8 4.3 34 960-995 238-271 (806)
384 3llm_A ATP-dependent RNA helic 96.6 0.00074 2.5E-08 72.4 3.0 126 383-526 73-203 (235)
385 2e87_A Hypothetical protein PH 96.6 0.0018 6E-08 74.2 6.3 45 1068-1112 247-294 (357)
386 2qby_A CDC6 homolog 1, cell di 96.6 0.0014 4.9E-08 75.3 5.6 35 961-995 46-84 (386)
387 1jjv_A Dephospho-COA kinase; P 96.6 0.00046 1.6E-08 72.2 1.3 43 1081-1124 87-132 (206)
388 3vaa_A Shikimate kinase, SK; s 96.6 0.00072 2.5E-08 70.4 2.5 38 947-984 12-49 (199)
389 2pez_A Bifunctional 3'-phospho 96.6 0.00032 1.1E-08 71.8 -0.3 39 960-999 5-45 (179)
390 1l8q_A Chromosomal replication 96.5 0.0017 5.8E-08 73.2 5.4 29 385-413 36-64 (324)
391 1u94_A RECA protein, recombina 96.5 0.0095 3.2E-07 67.7 11.6 140 958-1131 61-238 (356)
392 3bos_A Putative DNA replicatio 96.5 0.0021 7.1E-08 68.5 5.8 28 960-987 52-79 (242)
393 3lxx_A GTPase IMAP family memb 96.5 0.0061 2.1E-07 65.3 9.3 27 963-989 32-58 (239)
394 1m7g_A Adenylylsulfate kinase; 96.5 0.00047 1.6E-08 72.6 0.3 40 381-420 20-61 (211)
395 1f6b_A SAR1; gtpases, N-termin 96.5 0.00087 3E-08 69.7 2.4 41 365-408 7-47 (198)
396 2q6t_A DNAB replication FORK h 96.5 0.0073 2.5E-07 71.2 10.6 129 374-538 188-318 (444)
397 1sxj_D Activator 1 41 kDa subu 96.5 0.0014 4.9E-08 74.5 4.4 44 1069-1113 133-176 (353)
398 2www_A Methylmalonic aciduria 96.5 0.00075 2.5E-08 76.9 1.7 36 384-419 72-107 (349)
399 3llm_A ATP-dependent RNA helic 96.4 0.004 1.4E-07 66.6 7.3 39 1066-1104 173-212 (235)
400 1mky_A Probable GTP-binding pr 96.4 0.0011 3.7E-08 78.2 3.0 59 963-1021 183-253 (439)
401 1lv7_A FTSH; alpha/beta domain 96.4 0.0037 1.3E-07 67.7 7.1 34 962-997 47-80 (257)
402 2qor_A Guanylate kinase; phosp 96.4 0.00072 2.4E-08 70.8 1.2 66 959-1027 11-87 (204)
403 3m6a_A ATP-dependent protease 96.4 0.00058 2E-08 82.6 0.6 47 374-421 97-143 (543)
404 1svm_A Large T antigen; AAA+ f 96.4 0.00031 1.1E-08 80.5 -1.8 62 950-1019 159-220 (377)
405 3n70_A Transport activator; si 96.4 0.0071 2.4E-07 59.3 8.0 40 1069-1109 76-115 (145)
406 3cf0_A Transitional endoplasmi 96.3 0.0027 9.3E-08 70.7 5.3 31 381-411 44-74 (301)
407 2xau_A PRE-mRNA-splicing facto 96.3 0.0031 1.1E-07 79.5 6.2 52 1063-1114 202-256 (773)
408 2ffh_A Protein (FFH); SRP54, s 96.3 0.0028 9.7E-08 73.5 5.3 43 961-1003 99-141 (425)
409 3qks_A DNA double-strand break 96.2 0.0022 7.7E-08 67.0 3.8 30 377-407 15-44 (203)
410 2gj8_A MNME, tRNA modification 96.2 0.0047 1.6E-07 62.4 6.1 27 384-410 2-28 (172)
411 1m2o_B GTP-binding protein SAR 96.2 0.0028 9.4E-08 65.3 4.2 34 374-408 12-45 (190)
412 4fcw_A Chaperone protein CLPB; 96.2 0.0094 3.2E-07 66.4 8.7 30 962-991 49-78 (311)
413 1y63_A LMAJ004144AAA protein; 96.2 0.0023 7.9E-08 65.7 3.3 32 378-409 2-33 (184)
414 3h4m_A Proteasome-activating n 96.1 0.0097 3.3E-07 65.4 8.4 28 383-410 48-75 (285)
415 3nwj_A ATSK2; P loop, shikimat 96.1 0.0016 5.6E-08 70.2 2.1 38 947-984 17-72 (250)
416 3bos_A Putative DNA replicatio 96.1 0.0042 1.5E-07 66.1 5.1 28 385-412 51-78 (242)
417 1u94_A RECA protein, recombina 96.0 0.03 1E-06 63.6 12.0 37 374-411 49-88 (356)
418 2qor_A Guanylate kinase; phosp 96.0 0.0021 7.2E-08 67.1 2.2 30 382-411 8-37 (204)
419 2www_A Methylmalonic aciduria 96.0 0.0019 6.6E-08 73.5 1.9 39 963-1001 77-115 (349)
420 3lxw_A GTPase IMAP family memb 96.0 0.012 4.2E-07 63.3 8.2 24 388-411 23-46 (247)
421 2jaq_A Deoxyguanosine kinase; 96.0 0.0006 2E-08 71.0 -2.3 67 963-1029 3-85 (205)
422 3h4m_A Proteasome-activating n 96.0 0.0083 2.8E-07 66.0 6.9 23 962-984 53-75 (285)
423 2ffh_A Protein (FFH); SRP54, s 96.0 0.0019 6.5E-08 75.0 1.7 42 377-420 91-132 (425)
424 2yvu_A Probable adenylyl-sulfa 95.9 0.0019 6.4E-08 66.4 1.3 36 382-417 9-44 (186)
425 2ohf_A Protein OLA1, GTP-bindi 95.9 0.0034 1.2E-07 72.0 3.5 28 382-409 18-45 (396)
426 1kag_A SKI, shikimate kinase I 95.9 0.0037 1.3E-07 63.1 3.2 31 961-995 5-35 (173)
427 1j8m_F SRP54, signal recogniti 95.8 0.0017 6E-08 72.0 0.7 42 377-419 89-131 (297)
428 3t34_A Dynamin-related protein 95.8 0.0037 1.3E-07 71.6 3.4 45 949-996 26-72 (360)
429 4eaq_A DTMP kinase, thymidylat 95.8 0.0034 1.2E-07 66.9 2.7 48 947-995 10-60 (229)
430 1mky_A Probable GTP-binding pr 95.8 0.0092 3.2E-07 70.2 6.6 36 387-422 181-228 (439)
431 3b9p_A CG5977-PA, isoform A; A 95.8 0.021 7.2E-07 63.2 9.1 24 961-984 55-78 (297)
432 4dcu_A GTP-binding protein ENG 95.7 0.0088 3E-07 70.8 6.2 54 486-541 88-142 (456)
433 2qag_A Septin-2, protein NEDD5 95.7 0.0014 4.7E-08 75.1 -0.8 52 356-416 16-67 (361)
434 3bgw_A DNAB-like replicative h 95.7 0.0093 3.2E-07 70.1 6.1 130 375-538 186-318 (444)
435 2wji_A Ferrous iron transport 95.7 0.013 4.5E-07 58.5 6.4 24 388-411 5-28 (165)
436 2chg_A Replication factor C sm 95.7 0.036 1.2E-06 57.7 10.0 44 1068-1112 101-144 (226)
437 1m7g_A Adenylylsulfate kinase; 95.7 0.002 6.7E-08 67.8 0.1 34 963-996 28-63 (211)
438 4fcw_A Chaperone protein CLPB; 95.6 0.011 3.6E-07 65.9 6.1 31 386-416 47-77 (311)
439 3m6a_A ATP-dependent protease 95.6 0.0035 1.2E-07 75.8 2.1 58 960-1017 108-165 (543)
440 2i1q_A DNA repair and recombin 95.5 0.006 2E-07 68.6 3.5 25 958-982 96-120 (322)
441 2p5t_B PEZT; postsegregational 95.5 0.0043 1.5E-07 67.2 2.0 38 382-421 28-65 (253)
442 2i1q_A DNA repair and recombin 95.5 0.035 1.2E-06 62.3 9.6 28 382-409 94-121 (322)
443 2wjg_A FEOB, ferrous iron tran 95.4 0.011 3.9E-07 60.1 5.0 22 388-409 9-30 (188)
444 2if2_A Dephospho-COA kinase; a 95.4 0.0057 2E-07 63.6 2.8 21 388-408 3-23 (204)
445 2b8t_A Thymidine kinase; deoxy 95.4 0.015 5.3E-07 61.3 6.1 51 1069-1123 89-150 (223)
446 3syl_A Protein CBBX; photosynt 95.4 0.044 1.5E-06 60.9 10.1 24 962-985 69-92 (309)
447 1ega_A Protein (GTP-binding pr 95.4 0.0057 2E-07 68.1 2.8 26 385-410 7-32 (301)
448 1np6_A Molybdopterin-guanine d 95.4 0.0052 1.8E-07 62.4 2.0 26 387-412 7-32 (174)
449 3cf0_A Transitional endoplasmi 95.3 0.027 9.1E-07 62.6 8.0 33 961-995 50-82 (301)
450 2q6t_A DNAB replication FORK h 95.3 0.015 5.1E-07 68.5 6.2 159 950-1124 190-397 (444)
451 2zej_A Dardarin, leucine-rich 95.3 0.0086 2.9E-07 61.1 3.4 25 388-412 4-28 (184)
452 2ga8_A Hypothetical 39.9 kDa p 95.2 0.0036 1.2E-07 70.3 0.3 38 374-411 10-49 (359)
453 3cm0_A Adenylate kinase; ATP-b 95.1 0.0096 3.3E-07 60.8 3.3 26 384-409 2-27 (186)
454 1jr3_A DNA polymerase III subu 95.1 0.05 1.7E-06 62.1 9.6 44 1068-1112 118-161 (373)
455 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.024 8.2E-07 62.8 6.2 28 382-409 119-146 (331)
456 1np6_A Molybdopterin-guanine d 95.0 0.01 3.5E-07 60.2 2.9 35 963-997 9-46 (174)
457 3t61_A Gluconokinase; PSI-biol 95.0 0.0091 3.1E-07 62.0 2.6 25 386-410 18-42 (202)
458 2v1u_A Cell division control p 95.0 0.025 8.5E-07 64.8 6.5 28 384-411 42-69 (387)
459 1njg_A DNA polymerase III subu 94.9 0.021 7.3E-07 60.3 5.4 24 388-411 47-70 (250)
460 1xp8_A RECA protein, recombina 94.9 0.11 3.7E-06 59.2 11.5 136 958-1126 72-244 (366)
461 2gj8_A MNME, tRNA modification 94.9 0.011 3.9E-07 59.6 3.0 25 960-984 4-28 (172)
462 3t61_A Gluconokinase; PSI-biol 94.9 0.0082 2.8E-07 62.4 1.9 33 962-998 20-52 (202)
463 1ex7_A Guanylate kinase; subst 94.9 0.012 4.2E-07 60.3 3.1 77 961-1045 2-91 (186)
464 4dcu_A GTP-binding protein ENG 94.8 0.0041 1.4E-07 73.6 -0.6 48 1063-1113 96-144 (456)
465 3t15_A Ribulose bisphosphate c 94.8 0.02 6.9E-07 63.3 4.8 22 963-984 39-60 (293)
466 1sxj_C Activator 1 40 kDa subu 94.8 0.0035 1.2E-07 71.1 -1.4 43 373-415 31-75 (340)
467 2v1u_A Cell division control p 94.7 0.031 1E-06 64.1 6.5 26 961-986 45-70 (387)
468 1qhx_A CPT, protein (chloramph 94.7 0.015 5.2E-07 58.8 3.5 26 386-411 3-28 (178)
469 1hqc_A RUVB; extended AAA-ATPa 94.7 0.11 3.7E-06 58.0 10.9 45 1068-1113 89-151 (324)
470 1gvn_B Zeta; postsegregational 94.7 0.015 5.2E-07 64.1 3.7 36 384-421 31-66 (287)
471 1tue_A Replication protein E1; 94.7 0.042 1.4E-06 56.7 6.6 22 963-984 61-82 (212)
472 1lv7_A FTSH; alpha/beta domain 94.7 0.011 3.7E-07 64.0 2.4 34 376-411 37-70 (257)
473 3co5_A Putative two-component 94.6 0.075 2.6E-06 51.7 8.1 39 1070-1109 76-115 (143)
474 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.1 3.4E-06 58.5 10.2 23 962-984 47-69 (322)
475 3d8b_A Fidgetin-like protein 1 94.6 0.045 1.5E-06 62.4 7.4 23 962-984 119-141 (357)
476 1ex7_A Guanylate kinase; subst 94.6 0.013 4.3E-07 60.1 2.3 24 388-411 3-26 (186)
477 2wjg_A FEOB, ferrous iron tran 94.5 0.017 5.7E-07 58.8 3.2 21 963-983 10-30 (188)
478 1q3t_A Cytidylate kinase; nucl 94.5 0.016 5.4E-07 61.9 3.2 28 383-410 13-40 (236)
479 3kb2_A SPBC2 prophage-derived 94.5 0.017 5.8E-07 57.9 3.2 23 388-410 3-25 (173)
480 2wji_A Ferrous iron transport 94.5 0.023 7.7E-07 56.7 4.1 22 963-984 6-27 (165)
481 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.079 2.7E-06 57.1 8.7 116 958-1123 37-175 (262)
482 3pfi_A Holliday junction ATP-d 94.5 0.16 5.6E-06 57.0 11.5 24 962-985 57-80 (338)
483 4ag6_A VIRB4 ATPase, type IV s 94.5 0.012 4.2E-07 68.0 2.2 35 385-419 34-68 (392)
484 2rhm_A Putative kinase; P-loop 94.4 0.02 6.7E-07 58.7 3.4 27 384-410 3-29 (193)
485 3r20_A Cytidylate kinase; stru 94.4 0.012 4.1E-07 62.6 1.6 25 386-410 9-33 (233)
486 3uk6_A RUVB-like 2; hexameric 94.3 0.074 2.5E-06 60.6 8.4 123 959-1109 69-227 (368)
487 1kht_A Adenylate kinase; phosp 94.3 0.021 7.3E-07 58.3 3.4 26 385-410 2-27 (192)
488 2yvu_A Probable adenylyl-sulfa 94.3 0.013 4.3E-07 60.1 1.6 33 963-995 16-49 (186)
489 1m2o_B GTP-binding protein SAR 94.3 0.021 7.1E-07 58.6 3.3 32 950-982 14-45 (190)
490 1xp8_A RECA protein, recombina 94.2 0.13 4.3E-06 58.6 9.9 43 382-430 70-112 (366)
491 2orw_A Thymidine kinase; TMTK, 94.2 0.049 1.7E-06 55.7 5.7 123 959-1123 2-137 (184)
492 1uf9_A TT1252 protein; P-loop, 94.1 0.022 7.6E-07 58.9 3.2 24 386-409 8-31 (203)
493 2qp9_X Vacuolar protein sortin 94.1 0.1 3.4E-06 59.4 8.9 23 962-984 86-108 (355)
494 3lw7_A Adenylate kinase relate 94.1 0.023 7.9E-07 56.9 3.2 19 388-406 3-21 (179)
495 1jal_A YCHF protein; nucleotid 94.1 0.032 1.1E-06 63.3 4.5 24 386-409 2-25 (363)
496 3d8b_A Fidgetin-like protein 1 94.1 0.091 3.1E-06 59.8 8.4 27 384-410 115-141 (357)
497 2v54_A DTMP kinase, thymidylat 94.1 0.025 8.6E-07 58.5 3.4 26 385-410 3-28 (204)
498 1gtv_A TMK, thymidylate kinase 94.0 0.0069 2.4E-07 63.4 -1.1 25 388-412 2-26 (214)
499 3trf_A Shikimate kinase, SK; a 94.0 0.027 9.1E-07 57.4 3.4 26 385-410 4-29 (185)
500 2p67_A LAO/AO transport system 94.0 0.017 5.7E-07 65.5 1.9 38 963-1000 59-96 (341)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-152 Score=1511.72 Aligned_cols=1122 Identities=19% Similarity=0.223 Sum_probs=792.1
Q ss_pred HHhhc-cCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcc-----------cccCCccchHHHHHHH----HHHHHHHH
Q 037346 23 IALGN-KRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGV-----------ANRLTALRLAKVLFFS----AWQEILFI 86 (1156)
Q Consensus 23 ~~~g~-~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~l~~~----~~~~~~~~ 86 (1156)
++.|. +++|+.+|.+.+.++|..+...+.+++.|...... ....++.+ ++.++|. .+..++++
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVS-IPQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCC-HHHHTTTCCHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCC-HHHHhhccChHHHHHHHHH
Confidence 34444 45788999999999999988888888776553210 00112223 3344442 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--------Cc-------cc---------chhhHH-------HHHHHHHHHHH
Q 037346 87 AILALLYTLATYVGPYLIDNFVQYLNGR--------QA-------FE---------YEGYVL-------CLSERHWFFQV 135 (1156)
Q Consensus 87 ~~~~~~~~~~~~~~p~ll~~~i~~~~~~--------~~-------~~---------~~g~~l-------~~~~~~~~~~~ 135 (1156)
.++.++..+...+.+++++++++.+... .. .. ...+.+ .++.....+..
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444556777777754211 00 00 000100 11111222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 037346 136 QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASI 194 (1156)
Q Consensus 136 ~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l 194 (1156)
.+.+.|+...++..+|+|+++++..+++++++|+++|++++|+++ ++++++..-...++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888899999999999999999999999999999987 11111111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHH----HHHHH
Q 037346 195 ATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKS----VYTEA 265 (1156)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~----~~~~~ 265 (1156)
+.++++++++++...+.+...+..++.++..+++.+.++|.++|||+||+|+||.+.. ..+..++. ....+
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566677888888999999999999999999999999999999992111 11111111 11111
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 037346 266 MISFFCW--GAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343 (1156)
Q Consensus 266 ~~~~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~ 343 (1156)
+...... ....++.+++++.+.+.++.+++|.+++++.++..+..|+..+++.+..+.++.+|++||+++|+.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 1111111 12234456678888888999999999999999999999999999999999999999999999998765422
Q ss_pred cc-cccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 037346 344 DV-LEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG- 421 (1156)
Q Consensus 344 ~~-~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g- 421 (1156)
.. ....+..+..+.|+|+||+|+|+..++.++|+|+||+|++|++++||||||||||||+++|+|+|+|++|+|.+||
T Consensus 401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 21 1111222345679999999999877778999999999999999999999999999999999999999999999999
Q ss_pred ------------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ------------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ------------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+++||+|+||+|++||+|||+||.+ .+++++.++++.|+++++++.+|+||+|.|||+|.+||||||
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 4899999999999999999999986 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
|||+||||+|++|+||||||||||||+++++.+.+.+.. .+|+|+|+||||+++++.||+|++|++|+|+++|+|+|++
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999999999999998766655543 6899999999999999999999999999999999999999
Q ss_pred hcCcchHHHHHhhhhhccCC----CCCCCCCcccccccccCC--CCCCCcccchhccccc------CCCCcccccCccCc
Q 037346 568 NSGTDFMELVGAHKQALSGL----DSIDRGPVSERKSINKEN--DGTSTTNEIVNKEENK------NFQSDDEAALPKGQ 635 (1156)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 635 (1156)
+.++.|.+++..+....... ......+.........+. ................ ......+++...+.
T Consensus 641 ~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1321)
T 4f4c_A 641 AQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGK 720 (1321)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CCCCC
T ss_pred HhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccc
Confidence 99999999886653221100 000000000000000000 0000000000000000 00000000000000
Q ss_pred ----chhHHHHhcCcccHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhhhhhhhhhcccc-ccccC-CCCCchhhHHH
Q 037346 636 ----LVQEEEREKGKVGFSVYWKYMTTAYGGVLV-PFILLAQIIFQIFQIGSNYWMAWATPV-AKDVN-PAVGASTLIIV 708 (1156)
Q Consensus 636 ----~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~ 708 (1156)
....+.++.+......+ .++....+.... .+.+++.++........++|+..|... ..... ......++..+
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1321)
T 4f4c_A 721 DALSRLKQELEENNAQKTNLF-EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALM 799 (1321)
T ss_dssp CHHHHHHHTTTTSCCCCCCHH-HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHH
T ss_pred hhHHHHHHHHHHcCCcceeHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHH
Confidence 01111122222222222 222222222221 111222222222222223333322211 11111 11111222222
Q ss_pred HHH------------------HHHHHHHHHHHHHHHHhcccccccccc--ccccchhhhhcccccccchhhhcccchHHH
Q 037346 709 YVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDS--TPSGRILNRVSENVKWADQSAADMDIPYDI 768 (1156)
Q Consensus 709 ~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~il~R~s~d~~~~d~~~~d~~l~~~~ 768 (1156)
|++ .+.+++.++|.+++++++++|++|||. +|+|+++||++ .|+..++..++..+
T Consensus 800 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s-----~D~~~i~~~l~~~l 874 (1321)
T 4f4c_A 800 FLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLA-----TDVPNLRTAIDFRF 874 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHH-----THHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcch-----hhHHHHHHHHHHHH
Confidence 211 567889999999999999999999986 89999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchH
Q 037346 769 GAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQE 848 (1156)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e 848 (1156)
..++..++.+++.++++++.+|+++++++++++++++...++.+..+.......+..++...++.|+++|+++||+|++|
T Consensus 875 ~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 954 (1321)
T 4f4c_A 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE 954 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH
T ss_pred HHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccch
Confidence 99999999999999999999999988877777776666666555444444444455667788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHc----CCCc
Q 037346 849 LRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSL----------------------AFLISV----PNGI 902 (1156)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------~~~~~~----~~~~ 902 (1156)
+++.+++.+.++...+..++......+.......+..+..+++. ...+.. ....
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1034 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887766555444333322222111111100 001111 1112
Q ss_pred cchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC----------------CCceee
Q 037346 903 IHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN----------------LPLVLR 966 (1156)
Q Consensus 903 ~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~----------------~~~vL~ 966 (1156)
.....+++..+.+++|+.++.+.+++.+. ...++..||..|.|+|+||+|+|+.+ +.++|+
T Consensus 1035 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIV 1111 (1321)
T 4f4c_A 1035 TSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALV 1111 (1321)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEE
Confidence 23347888999999999999987766432 23345568889999999999999532 223566
Q ss_pred CCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC---CCCCHHHHHHHH
Q 037346 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL---EEHADEQIWEAL 1043 (1156)
Q Consensus 967 G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~---~~~~deei~~al 1043 (1156)
||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.++ ++++|+|||+||
T Consensus 1112 G~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al 1191 (1321)
T 4f4c_A 1112 GPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191 (1321)
T ss_dssp CSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHH
T ss_pred CCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765 357899999999
Q ss_pred HHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEE
Q 037346 1044 DKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVT 1105 (1156)
Q Consensus 1044 ~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~ 1105 (1156)
++|+++++|.++|+||||. ||||||+|+|||||||||+||++||+.||++|++.+++||+|+
T Consensus 1192 ~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred HHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhccC
Q 037346 1106 IAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155 (1156)
Q Consensus 1106 IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~~~ 1155 (1156)
|||||+||++||||+|||+|+|+|+|+|+||+++ +|.|++||++|...+
T Consensus 1272 IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1272 IAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp ECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C--------------
T ss_pred eccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999986 799999999876543
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-125 Score=1252.03 Aligned_cols=1063 Identities=18% Similarity=0.232 Sum_probs=743.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------c------------c-----cchhhHH------HHH
Q 037346 78 SAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQ-------A------------F-----EYEGYVL------CLS 127 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~-------~------------~-----~~~g~~l------~~~ 127 (1156)
.+|..+++++++.++..++..+.|++++.+++.+.... . . .+..+++ .++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888888888999988887653110 0 0 0111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------HHHHHH----HHH-------
Q 037346 128 ERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------ALLILY----KKL------- 189 (1156)
Q Consensus 128 ~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~~~ll~----~~l------- 189 (1156)
.....+...+.+.++...++..+|+|+++++...++++++|+++|++++|++. .+..+. ..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223345677888889999999999999999999999999999999999987 000000 000
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH--HHHHHHHHHH
Q 037346 190 --GL-ASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---LKK--NETAWLKKSV 261 (1156)
Q Consensus 190 --g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---~r~--~e~~~~~~~~ 261 (1156)
.| .+++.++++++++++...+.+...+..++.++..++..+.+.|.++||++||.|++| .++ ...+..++..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 00 111122222333334445566677777777788888888999999999999999998 111 1111111111
Q ss_pred ----HHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 262 ----YTEAMISFFC--WGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASF 335 (1156)
Q Consensus 262 ----~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~f 335 (1156)
...+....+. ......+..++++.+.+..+.+++|.+++++.++..+..|+..+...+..+.++.++++|+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1122334466788888888889999999988888888899999999999999999999999999
Q ss_pred hccCCCCcc-ccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC
Q 037346 336 LCLEGLQTD-VLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414 (1156)
Q Consensus 336 l~~~~~~~~-~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~ 414 (1156)
++.++..+. .....+.....+.|+++|++|+|+.+++.++|+|+||+|++||+++||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 987543221 1111111223467999999999986555689999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 415 GIIRLCGT-------------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 415 G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
|+|.++|. ++||||+|++|++||+|||.+|.+ .++++++++++.+++.+++..+|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999994 899999999999999999999875 6788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~ 559 (1156)
.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.+.. .+|+|+|+||||++++..||+|++|++|+|++
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887765533 57899999999999999999999999999999
Q ss_pred ccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhH
Q 037346 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQE 639 (1156)
Q Consensus 560 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1156)
.|+|+++++.++.|.+++..+..........+... ............................... ..........+
T Consensus 605 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 681 (1284)
T 3g5u_A 605 QGNHDELMREKGIYFKLVMTQTAGNEIELGNEACK-SKDEIDNLDMSSKDSGSSLIRRRSTRKSICG--PHDQDRKLSTK 681 (1284)
T ss_dssp EECHHHHHHTTSHHHHHHHHTC----------------------------------------------------------
T ss_pred ECCHHHHHhCCCHHHHHHHHhhhcccccccccccc-ccccccccccccccccccccccccccccccc--ccccccccchh
Confidence 99999999888888877654432111000000000 0000000000000000000000000000000 00000000000
Q ss_pred HH--HhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhh----hccccccccCCCCCchhhHHHHH---
Q 037346 640 EE--REKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMA----WATPVAKDVNPAVGASTLIIVYV--- 710 (1156)
Q Consensus 640 e~--~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~--- 710 (1156)
+. ......++..++.+.+.......+. +++.++..++....++++. .+...............+..+|+
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1284)
T 3g5u_A 682 EALDEDVPPASFWRILKLNSTEWPYFVVG--IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILG 759 (1284)
T ss_dssp --CCCCCSCCCTTHHHHHHHHTCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Confidence 10 0111223334444544433222221 1222222222222222222 22110000000000011111111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhccccccccc--cccccchhhhhcccccccchhhhcccchHHHHHHHH
Q 037346 711 ---------------GAGYKTATQLFNKMHVCIFRAPMYFFD--STPSGRILNRVSENVKWADQSAADMDIPYDIGAFAF 773 (1156)
Q Consensus 711 ---------------~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~ 773 (1156)
..+.++..++|.+++++++++|++||+ .+++|++++|++ .|+..++..++..+..++.
T Consensus 760 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~-----~D~~~i~~~~~~~l~~~~~ 834 (1284)
T 3g5u_A 760 IISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLA-----NDAAQVKGATGSRLAVIFQ 834 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 156788999999999999999999999 489999999999 8888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHH
Q 037346 774 SMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRD 853 (1156)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~ 853 (1156)
.++.+++.+++++.++|.++++++.++++++++...+.+..+..........+.....+.|+++|+++||+|++|+++.+
T Consensus 835 ~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~ 914 (1284)
T 3g5u_A 835 NIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET 914 (1284)
T ss_dssp HHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888889999999876655544444433333333333333333334445566789999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCc-----------------------cchHHHH
Q 037346 854 TNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLIS-VPNGI-----------------------IHPYKNL 909 (1156)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~-----------------------~~~~~~~ 909 (1156)
++.+..+...+..........+.......+..+..++...+... ...+. .....++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1284)
T 3g5u_A 915 MYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDY 994 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766555443333222222222221111111111000 00000 0111234
Q ss_pred HHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcC----------------CCCceeeCCCCCCH
Q 037346 910 ERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAP----------------NLPLVLRGRTGSGK 973 (1156)
Q Consensus 910 ~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~----------------~~~~vL~G~SGsGK 973 (1156)
.....+++|+.++.+.+++..... ......++..|.|+|+||+|+|+. |+.++|+|||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGK 1072 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTH
T ss_pred HHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCH
Confidence 567788999999988766543211 111223455789999999999953 22345779999999
Q ss_pred HHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC---CCCHHHHHHHHHHcCCCh
Q 037346 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE---EHADEQIWEALDKCQLGD 1050 (1156)
Q Consensus 974 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~---~~~deei~~al~~~~l~~ 1050 (1156)
|||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|++||+|||.++. ..++++++++++++++++
T Consensus 1073 STl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~ 1152 (1284)
T 3g5u_A 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152 (1284)
T ss_dssp HHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999998764 357899999999999999
Q ss_pred HHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1051 EVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1051 ~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
++.++|+||||. ||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 1153 ~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred HHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence 999999999874 89999999999999999999999999999999998899999999999999
Q ss_pred ccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1113 VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1113 i~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
+.+||||+||++|+|+|.|+|+||+++ +|.|++||+.+..
T Consensus 1233 i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp GGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC-
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999999999999985 7999999987653
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=8.4e-69 Score=659.60 Aligned_cols=505 Identities=22% Similarity=0.248 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-------chhhHH-------HHHHHHHHHHH
Q 037346 73 KVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF---E-------YEGYVL-------CLSERHWFFQV 135 (1156)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~---~-------~~g~~l-------~~~~~~~~~~~ 135 (1156)
..+++.+++.++.++++.++..++.++.|++++.+++.+...... . ..+.++ .++.....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888999999999999999999999999987543221 0 011111 12222333456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 037346 136 QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASI 194 (1156)
Q Consensus 136 ~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l 194 (1156)
.+.+.++...++..+|+|.++++...+++.++|+++|++++|++. ++++++..-+..++
T Consensus 86 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 165 (578)
T 4a82_A 86 QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTL 165 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 778899999999999999999999999999999999999999997 11112222122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH---HHHHHHHHHHHHH
Q 037346 195 ATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KN---ETAWLKKSVYTEA 265 (1156)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~---e~~~~~~~~~~~~ 265 (1156)
++++++++++++...+.+...+..++..+..+++.+.+.|.++|+++||+|++|.+ +. ..+...+.....+
T Consensus 166 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 166 AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555556677788888888899999999999999999999999999911 11 1111111111111
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 037346 266 MISFFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343 (1156)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~ 343 (1156)
....+.... ...+.+++++.+.+..+.+++|.+++++.++..+..|+..++..+..+.++.+|++||.++++.++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 111111111 122345677888888889999999999999999999999999999999999999999999998765432
Q ss_pred cccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 037346 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-- 421 (1156)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-- 421 (1156)
......+.....+.++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 326 NGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 21111111223457999999999974 246799999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 -----------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 -----------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
+++||||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3899999999999999999999875 5677889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|++||||++++|+++|||||||+||+++++.+.+.+.. .+++|+|+||||++.+..||+|++|++|++++.|+++|+++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999988776544 56899999999999998999999999999999999999998
Q ss_pred cCcchHHHHH
Q 037346 569 SGTDFMELVG 578 (1156)
Q Consensus 569 ~~~~~~~~~~ 578 (1156)
.++.|.+++.
T Consensus 565 ~~~~~~~~~~ 574 (578)
T 4a82_A 565 KQGAYEHLYS 574 (578)
T ss_dssp TTSHHHHHHT
T ss_pred CCcHHHHHHH
Confidence 8777877764
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-68 Score=657.22 Aligned_cols=511 Identities=20% Similarity=0.248 Sum_probs=401.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhhHH-------HHHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGYVL-------CLSERHWFFQVQQF 138 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~~l-------~~~~~~~~~~~~~~ 138 (1156)
.+.++.+++.+++.+++++++.++..++.+++|++++.++|......... ..++++ .++.....+...+.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYA 90 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577888999999999999999999999999999999865332211 111111 11112222345567
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH---H------------------HHHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA---L------------------LILYKKLGLASIATL 197 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~---~------------------~ll~~~lg~~~l~~~ 197 (1156)
+.++...++..+|+|+++++...+++.++|+++|++++|++.. + +++++.-...+++.+
T Consensus 91 ~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l 170 (587)
T 3qf4_A 91 SQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLI 170 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999998888999999999999999870 0 000000000111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHH----HHHHHHH
Q 037346 198 LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKSV----YTEAMIS 268 (1156)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~~----~~~~~~~ 268 (1156)
+++++++++..++.+...+..++.++..+++.+.+.|.++||++||+|++|.+.. ..+..++.. ...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
T 3qf4_A 171 FLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFAL 250 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334445566777778888888999999999999999999999999991110 011111111 1111111
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 037346 269 FF--CWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL 346 (1156)
Q Consensus 269 ~~--~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~ 346 (1156)
.+ .......+.+++++.+.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++......
T Consensus 251 ~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 330 (587)
T 3qf4_A 251 PLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD 330 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 11 1112234456678888888999999999999999999999999999999999999999999999998764322111
Q ss_pred ccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
...+.....+.|+++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 331 ~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 331 NALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp TCBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 11111123457999999999974 346899999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 --------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 --------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+++||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 3799999999999999999999875 6778889999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
||||++++|+++|||||||+||+++++++.+.+.. .+|+|+|+||||++.+..||+|++|++|+|++.|+++|+++.++
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~ 569 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK 569 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999887644 56899999999999998999999999999999999999998877
Q ss_pred chHHHHHhh
Q 037346 572 DFMELVGAH 580 (1156)
Q Consensus 572 ~~~~~~~~~ 580 (1156)
.|.+++..+
T Consensus 570 ~~~~~~~~~ 578 (587)
T 3qf4_A 570 PYREIYESQ 578 (587)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788777543
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-68 Score=652.91 Aligned_cols=504 Identities=20% Similarity=0.283 Sum_probs=399.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc---hhhHH-------HHHHHHHHHHHHHHHHHHHH
Q 037346 75 LFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY---EGYVL-------CLSERHWFFQVQQFGIRFRA 144 (1156)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~---~g~~l-------~~~~~~~~~~~~~~~~~~r~ 144 (1156)
+++.+++.++..+++.++..++.++.|++++.+++.+........ ..+++ .++.....+...+.+.++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (598)
T 3qf4_B 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110 (598)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999999999999999999998754322211 11111 22222223445677888899
Q ss_pred HHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 145 TLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAIV 203 (1156)
Q Consensus 145 ~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~~ 203 (1156)
.++..+|+|+++++...+++.++|+++|++++|++. +++++++.-++.+++.+++++++
T Consensus 111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~ 190 (598)
T 3qf4_B 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT 190 (598)
T ss_dssp HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 01111111122223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-
Q 037346 204 MLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---------NETAWLKKSVYTEAMISFFCWG- 273 (1156)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---------~e~~~~~~~~~~~~~~~~~~~~- 273 (1156)
+++...+.+...+..++..+..+++.+.+.|.++|+++||+|++|.+. ...+...+.....+....+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (598)
T 3qf4_B 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV 270 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777888888888899999999999999999999999211 1111111111111111111111
Q ss_pred -HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCC
Q 037346 274 -APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRG 352 (1156)
Q Consensus 274 -~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~ 352 (1156)
....+.+++++++.+..+.+++|.+++++.+...+..|+..++..+..+.++.+|++||.++++.++..+.. ...+..
T Consensus 271 ~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~ 349 (598)
T 3qf4_B 271 NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELR 349 (598)
T ss_dssp HHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCC
Confidence 122344567888888888999999999999999999999999999999999999999999999876543211 111112
Q ss_pred CCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 037346 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------- 421 (1156)
Q Consensus 353 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------- 421 (1156)
...+.|+++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 350 ~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 350 EVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp SCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 23457999999999963 45799999999999999999999999999999999999999999999999
Q ss_pred --eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 422 --TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+++||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+||||++
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999865 5667888999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.++.|.+++
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 587 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHH
Confidence 99999999999999999999999876644 46899999999999998899999999999999999999998888888887
Q ss_pred Hhhh
Q 037346 578 GAHK 581 (1156)
Q Consensus 578 ~~~~ 581 (1156)
..+.
T Consensus 588 ~~~~ 591 (598)
T 3qf4_B 588 TSQY 591 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7e-66 Score=634.75 Aligned_cols=502 Identities=20% Similarity=0.260 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhh--HH-----HHHHHHHHHHHHHHHHHH
Q 037346 73 KVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGY--VL-----CLSERHWFFQVQQFGIRF 142 (1156)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~--~l-----~~~~~~~~~~~~~~~~~~ 142 (1156)
..+++.+++.++..+++.++..++..+.|++++.+++.+....... +.++ ++ .++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
T 3b5x_A 17 WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888899999999999999999999875322111 1111 11 222223334567788999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Q 037346 143 RATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATA 201 (1156)
Q Consensus 143 r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~ 201 (1156)
...++..+|+|.++++...+++.++|++++++++|++. +++++++.-.+.+++.+++++
T Consensus 97 ~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 011111111112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHH
Q 037346 202 IVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-------------NETAWLKKSVYTEAMIS 268 (1156)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-------------~e~~~~~~~~~~~~~~~ 268 (1156)
+++++...+.+...+..++..+..++..+.+.|.++|+++||.|++|.+. .+.+..+..........
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777788888888889999999999999999999999111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 037346 269 FFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK 348 (1156)
Q Consensus 269 ~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~ 348 (1156)
++.. ...+.+++++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+.. .
T Consensus 257 ~~~~--~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~ 332 (582)
T 3b5x_A 257 MIAS--LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--K 332 (582)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--C
Confidence 1111 12233566788888889999999999999999999999999999999999999999999999876432211 1
Q ss_pred CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 037346 349 MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------- 421 (1156)
Q Consensus 349 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------- 421 (1156)
.+.....+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 333 YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411 (582)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC
Confidence 1111223569999999999732 25799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+++||||+|++|++||+|||.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred HHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 379999999999999999999986 467888999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTD 572 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 572 (1156)
|||++++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++++++.++.
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b5x_A 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571 (582)
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999998876654 458999999999999888999999999999999999999987777
Q ss_pred hHHHHHh
Q 037346 573 FMELVGA 579 (1156)
Q Consensus 573 ~~~~~~~ 579 (1156)
|.+++..
T Consensus 572 ~~~~~~~ 578 (582)
T 3b5x_A 572 YAQLHRI 578 (582)
T ss_pred HHHHHHH
Confidence 8777654
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.4e-66 Score=635.73 Aligned_cols=501 Identities=20% Similarity=0.250 Sum_probs=395.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhh--HH-----HHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGY--VL-----CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~--~l-----~~~~~~~~~~~~~~~~~~r 143 (1156)
.+.+.+++.++..+++.++..++.++.|++++.+++.+....... +..+ ++ .++.....+...+.+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T 3b60_A 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 97 (582)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888899999999999999999999765322111 1111 11 2222223345677889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAI 202 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~ 202 (1156)
..++..+|+|.++++...+++.++|++++++++|++. +++++++.-++.+++.++++++
T Consensus 98 ~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 177 (582)
T 3b60_A 98 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177 (582)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 0011111111112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 037346 203 VMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-------------NETAWLKKSVYTEAMISF 269 (1156)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-------------~e~~~~~~~~~~~~~~~~ 269 (1156)
++++...+.+...+..++..+..+++.+.+.|.++|+++||.|++|.+. .+.+..+..........+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667777888888888899999999999999999999999111 111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccC
Q 037346 270 FCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKM 349 (1156)
Q Consensus 270 ~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~ 349 (1156)
+.. ...+.+++++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+.. ..
T Consensus 258 ~~~--~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~ 333 (582)
T 3b60_A 258 IAS--LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KR 333 (582)
T ss_dssp HHH--HHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CB
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CC
Confidence 111 12233556777777788999999999999999999999999999999999999999999999876432211 11
Q ss_pred CCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 037346 350 PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------- 421 (1156)
Q Consensus 350 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------- 421 (1156)
+.....+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 334 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 111223569999999999632 25799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+++||||+|++|++||+|||.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999986 4678889999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcch
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
||++++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++++++.++.|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 572 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 572 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHH
Confidence 999999999999999999999999998876644 4689999999999999899999999999999999999999887788
Q ss_pred HHHHHh
Q 037346 574 MELVGA 579 (1156)
Q Consensus 574 ~~~~~~ 579 (1156)
.+++..
T Consensus 573 ~~~~~~ 578 (582)
T 3b60_A 573 AQLHKM 578 (582)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-65 Score=634.67 Aligned_cols=506 Identities=22% Similarity=0.265 Sum_probs=385.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cc--c-c--hh-hHH-----HHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQ--AF--E-Y--EG-YVL-----CLSERHWFFQVQQFGI 140 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~--~~--~-~--~g-~~l-----~~~~~~~~~~~~~~~~ 140 (1156)
.+++.+++.++..+++.++..++..+.|++++.+++.+.... .. . . .. +++ .++.....+...+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (595)
T 2yl4_A 12 GLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQ 91 (595)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888889999999999999999999764221 11 0 1 11 111 1122222344567888
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 037346 141 RFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLA 199 (1156)
Q Consensus 141 ~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~ 199 (1156)
++...++..+|+|.++++...+++.++|+++|++++|++. +++++++.-++.+++.+++
T Consensus 92 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 171 (595)
T 2yl4_A 92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171 (595)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999988899999999999999987 0111111111122222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHH----HHHHHHHHHHH
Q 037346 200 TAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE-----TAWLKK----SVYTEAMISFF 270 (1156)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e-----~~~~~~----~~~~~~~~~~~ 270 (1156)
+++++++...+.+...+..++..+..++..+.+.|.++|+++||.|++|.+..+ .+..++ ..........+
T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (595)
T 2yl4_A 172 VPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455567777788888888888899999999999999999999921110 111111 11111111111
Q ss_pred H--HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 037346 271 C--WGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK 348 (1156)
Q Consensus 271 ~--~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~ 348 (1156)
. ......+.+++++++.+..+.+++|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++..+.....
T Consensus 252 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 331 (595)
T 2yl4_A 252 TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGV 331 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 1 11122344567888888889999999999999999999999999999999999999999999999875432211111
Q ss_pred CCCCCCCcc-EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 037346 349 MPRGNSDTA-IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------ 421 (1156)
Q Consensus 349 ~~~~~~~~~-i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------ 421 (1156)
.+.....+. |+++|++|+|+..++.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~ 411 (595)
T 2yl4_A 332 ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL 411 (595)
T ss_dssp CCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTB
T ss_pred CCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhC
Confidence 111122356 9999999999743335799999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+++||||+|++|++||+|||.++.+ .++++++++++.+++.++++.+|+|++|.+|++|.+||||||||
T Consensus 412 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 412 NPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp CHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred CHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 3799999999999999999999865 57788999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++||||++++|+++|||||||+||+++++.+.+.+.. .+++|+|+||||++.+..||+|++|++|++++.|+++++++.
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC----
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998876654 458999999999999888999999999999999999999873
Q ss_pred -CcchHHHHHh
Q 037346 570 -GTDFMELVGA 579 (1156)
Q Consensus 570 -~~~~~~~~~~ 579 (1156)
++.|.+++..
T Consensus 572 ~~~~~~~~~~~ 582 (595)
T 2yl4_A 572 PNGIYRKLMNK 582 (595)
T ss_dssp --C--------
T ss_pred CChHHHHHHHH
Confidence 6667666543
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-65 Score=681.60 Aligned_cols=433 Identities=20% Similarity=0.267 Sum_probs=366.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++|++++++|++|||++++|++++|++ .|+..++..+...+..++..++.++++++++++.+|+
T Consensus 163 ~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~-----~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~ 237 (1321)
T 4f4c_A 163 VAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLF-----DNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHH-----HHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 8888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.+++++.++..++.+..+...+......+...+.+.|+++|+++||+|++|+.+.++|.+..++..+.......
T Consensus 238 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 317 (1321)
T 4f4c_A 238 LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGL 317 (1321)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777777777777777777778888899999999999999999999999999999998888777766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCccch-----------------------HHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGIIHP-----------------------YKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+.+++++.+. .....+.++. ...+....++++|+.++++.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 397 (1321)
T 4f4c_A 318 FLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKP 397 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 555444444433333222222111 1111111111 2566778899999999998766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcC--CCC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAP--NLP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~--~~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+.. ........+..|.|+|+||+|+|+. +.+ ++|+||||||||||+++|+|+|+|++|+|
T Consensus 398 ~~~~~--~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I 475 (1321)
T 4f4c_A 398 VIDSS--SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475 (1321)
T ss_dssp CSSCS--SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred ccccc--ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence 54321 1112223455789999999999953 222 35669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|++++++++||++|+||||||+||+|||||||.++++ .+++++++||+.|+++++|+.+|+|+||.
T Consensus 476 ~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L 555 (1321)
T 4f4c_A 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555 (1321)
T ss_dssp EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCC
T ss_pred cCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCC
Confidence 999999999999999999999999999999999999998865 67999999999999999999999999976
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+|+|+|+
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ +|.|++|++.++
T Consensus 636 h~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 636 HRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp HHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHhhh
Confidence 9999985 899999998654
No 10
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-63 Score=611.30 Aligned_cols=431 Identities=24% Similarity=0.339 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.+++++++++|+.||+++++|++++|++ .|+..++..++..+..++..++.+++.+++++..+|+
T Consensus 104 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 104 LSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVI-----NDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999 8888888888888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..+++.+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777777777777888888888888888889999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcc----------------c-------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGII----------------H-------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~----------------~-------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+. .....+.+ . ....+.....+++|+.++.+.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666555555544433322221111 00111111 1 12567778899999999998776
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
+... ......++..|.|+++||+|+|+++. .++|.||||||||||+++|+|+++|++|+|.+
T Consensus 339 ~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 6421 11223355678999999999996433 24567999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc----------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ---------- 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~---------- 1062 (1156)
||+|+++++.+++|+++++|||||.+|++||+|||.++.+ .++++++++++.+++++++..+|+|+++.
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 9999999999999999999999999999999999988754 66889999999999999999999999864
Q ss_pred --------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChh
Q 037346 1063 --------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134 (1156)
Q Consensus 1063 --------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~ 1134 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 899999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHh
Q 037346 1135 KLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1135 eLl~~~~g~f~~l~~~~~ 1152 (1156)
||+++ +|.|++++..+.
T Consensus 575 ~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 575 ELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHT-TCHHHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHh
Confidence 99975 799999998754
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-63 Score=611.26 Aligned_cols=432 Identities=22% Similarity=0.302 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLT-----NDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHH-----HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999 7777777777777777777778888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.+++++.++..++.+..+...+...+..+.+.+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666666777777777888999999999999999999999999999999988887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcc-----------------------chHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGII-----------------------HPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+. .....+.+ .....+.....+++|+.++.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444433333332222211111110 00001111 112456677889999999988765
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+.. ..+...++..|.|+|+||+|+|+++.+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 325 ~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 325 AIEEA---DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp SCCCC---TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred ccCCC---CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 53211 111122345678999999999964332 356699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|++|++|||||.+|++||+|||.++.+ .++++++++++.+++++++..+|+|+++.
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 99999999999999999999999999999999999998754 67899999999999999999999999864
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCH
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHHh
Q 037346 1134 TKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~~ 1152 (1156)
+||+++ ++.|+++++.+.
T Consensus 562 ~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 562 KELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHHH-CHHHHHHHHHHC
T ss_pred HHHHhC-CcHHHHHHHHHh
Confidence 999975 689999998653
No 12
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=8.3e-61 Score=589.61 Aligned_cols=430 Identities=22% Similarity=0.344 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 92 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 92 VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRIT-----YDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45688889999999999999999999999999999999 7777787777777888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..+...+.+.|+++|+++||+|+.|+.+.+++.+..++..+.......
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777766777777777778787888889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCccc-----------------------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGIIH-----------------------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-----------------------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|......++..+..++++.+. .....+.++ ....+.....+++|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 777777666655544333222211 011111111 12567778899999999988765
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC-C--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN-L--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~-~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+. . ..+.++..|.|+++||+|+|+++ . .++|.||||||||||+++|+|+++|++|+|.
T Consensus 327 ~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 327 ERDN---G--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred cCCC---C--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 5321 1 11123345789999999999642 2 2356699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|+++++|||+|.+|++|++|||.++. +.++++++++++.+++++++.++|+|+|+.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999998865 467899999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ ++.|+++++.+.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhh
Confidence 9999975 789999998764
No 13
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.6e-61 Score=591.11 Aligned_cols=430 Identities=22% Similarity=0.331 Sum_probs=365.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 92 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-----YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45688889999999999999999999999999999999 7777888877778888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+.......
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776676666777777777888888888889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccc-----------------------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFLI-SVPNGIIH-----------------------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|......++..+..++++.+.. ....+.++ ....+.....+++|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888777776665544333322211 11111111 12567778889999999988766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC-CC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN-LP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~-~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+. . ....++..+.|+++||+|+|+++ .+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 327 ~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 327 EKDE---G--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp SCCC---C--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CccC---C--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 5321 1 11123345779999999999643 22 346699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|+++++|||+|.+|++|++|||.++. +.++++++++++.+++++++.++|+|+++.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999998764 467899999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ ++.|+++++.+.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHHc-CCHHHHHHHHhc
Confidence 9999975 789999998653
No 14
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.3e-61 Score=595.75 Aligned_cols=431 Identities=20% Similarity=0.289 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|++||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++..+|+
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (578)
T 4a82_A 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVI-----NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHH-----HHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46688889999999999999999999999999999999 5655555544444445566667777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++.+..++.+..++..+...+..++..+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 163 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T 4a82_A 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (578)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776677677777777778888888888899999999999999999999999999999999988887776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH--------------c-------CCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LIS--------------V-------PNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~~--------------~-------~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+.......+..+..++++.+ .+. . ..........+.....+++|+.++.+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 322 (578)
T 4a82_A 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444443333322211111110 000 0 00011122567788899999999998766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.... ......++..|.|+++||+|+|+++.+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 323 ~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 323 DIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp SSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred cccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 54321 111222345678999999999965332 346699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|+++++|||||.+|++||+|||.++. ..++++++++++.+++++++..+|+|+++.
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred ECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 9999999999999999999999999999999999998765 456899999999999999999999999864
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTH 559 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHH
Q 037346 1134 TKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~ 1151 (1156)
+||+++ +|.|+++++.+
T Consensus 560 ~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 560 RELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp HHHHHT-TSHHHHHHTTT
T ss_pred HHHHhC-CcHHHHHHHhh
Confidence 999975 78999998754
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.3e-60 Score=582.17 Aligned_cols=433 Identities=21% Similarity=0.293 Sum_probs=343.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|++||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 89 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 89 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLS-----SDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHH-----HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999999999999999999999 7777777777777888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++++++..++.+..++..+...+..+...+.+.|+++|+++||+|+.|+.+.++|.+..++..+.......
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776666666666666666666777777777788899999999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCccc-----------------------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGIIH-----------------------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-----------------------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|......++..+..+.++.+. .....+.++ ....+.....+++|+.++.+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666665555544433222211111 000111111 12566778889999999998765
Q ss_pred CCcccccCCCCCCCCCCCCe-EEEEEEEEEEcCC----------------CCceeeCCCCCCHHHHHHHHhhcccCCCce
Q 037346 928 EPALVIEATKPNNSRPSHGE-VNIRHLQVRYAPN----------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~-I~~~~Vsf~Y~~~----------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~ 990 (1156)
+.+.. ... ....+..|. |+++||+|+|+.+ +.++|.||||||||||+++|+|+++|++|+
T Consensus 324 ~~~~~-~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 324 KLPFN-EGV--ILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp SSCSS-CSB--CCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred ccCCC-CCC--CCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 53211 111 111233567 9999999999632 223456999999999999999999999999
Q ss_pred EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC----CCHHHHHHHHHHcCCChHHHhhcCCcccc----
Q 037346 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE----HADEQIWEALDKCQLGDEVRKKKGKLDSQ---- 1062 (1156)
Q Consensus 991 I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~----~~deei~~al~~~~l~~~i~~lp~gl~s~---- 1062 (1156)
|.+||+|+++++.+++|++|++|||+|.+|++||+|||.++.+ .++++++++++.+++++++.++|+|+++.
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 9999999999999999999999999999999999999977543 56899999999999999999999998864
Q ss_pred --------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEe
Q 037346 1063 --------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1063 --------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~Iv 1128 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 899999999999999999999999999999999988899999999999999999999999999999
Q ss_pred eecChhHHhcCCCChHHHHHHHHh
Q 037346 1129 EYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1129 E~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|.|+|+||++++++.|+++++.+.
T Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 561 EYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EEECSCC------C----------
T ss_pred EECCHHHHHhCCChHHHHHHHHhh
Confidence 999999999766889999998654
No 16
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-61 Score=641.47 Aligned_cols=433 Identities=19% Similarity=0.264 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++|++++++|++|||++++|++++|++ .|+..++..++..+..++..++.+++.+++++..+|+
T Consensus 135 ~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (1284)
T 3g5u_A 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT-----DDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWK 209 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
+++++++++++++++..++.+..+...+...+..+++.+++.|+++|+++||+|++|+++.++|.+..++..+...+...
T Consensus 210 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 289 (1284)
T 3g5u_A 210 LTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888788888888888888888999999999999999999999999999999999998887776554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF------------------------LISVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+ ..............+.....+++|+.++.+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 369 (1284)
T 3g5u_A 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKP 369 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33222222222211111111100 000000111122556778889999999987665
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC----------------CCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN----------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~----------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+...+.. ....+..|.|+|+||+|+|+.+ +.++|+||||||||||+++|+|+|+|++|+|
T Consensus 370 ~~~~~~~~~--~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i 447 (1284)
T 3g5u_A 370 SIDSFSKSG--HKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447 (1284)
T ss_dssp CCSSCCSSC--CCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred cCCcccccC--CCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 532211111 1112346889999999999642 1234669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|+++++++++|++|++|||||.||++||+|||.++. +.++++++++++.+++++++.++|+|+++.
T Consensus 448 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 527 (1284)
T 3g5u_A 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527 (1284)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS
T ss_pred EECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCcc
Confidence 99999999999999999999999999999999999998765 467999999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+
T Consensus 528 SgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 8999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ +|.|++++..+.
T Consensus 608 ~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 608 HDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp HHHHHHT-TSHHHHHHHHTC
T ss_pred HHHHHhC-CCHHHHHHHHhh
Confidence 9999985 789999987543
No 17
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.1e-56 Score=541.97 Aligned_cols=426 Identities=20% Similarity=0.258 Sum_probs=305.6
Q ss_pred cEEE--------eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE---------EE
Q 037346 357 AIEI--------IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII---------RL 419 (1156)
Q Consensus 357 ~i~~--------~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i---------~~ 419 (1156)
.|++ +|++++|+. ...+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 899999963 225899999 999999999999999999999999999999999995 23
Q ss_pred cC---------------eEEEEecCCc----CCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 420 CG---------------TKAYVAQSPW----IQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 420 ~g---------------~~~~v~Q~~~----~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
+| .+++++|... ++.+|++||+..... .++.+++++.++|.+..+ +..
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~L~~lgL~~~~~-----------~~~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLD-----------REL 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC--SSCHHHHHHHTTCTTGGG-----------SBG
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH--HHHHHHHHHHcCCCchhC-----------CCh
Confidence 33 2578888643 344699999975322 345678888888865443 334
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
.+|||||||||+|||||+.+|++||||||||+||+.++..+++.+.. ..|+|+|+||||++.+.. ||+|++|+++..
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~ 306 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG 306 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCcc
Confidence 68999999999999999999999999999999999999988876643 358999999999998864 999999985421
Q ss_pred EEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcch
Q 037346 558 TQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLV 637 (1156)
Q Consensus 558 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1156)
. .|.+. . ...
T Consensus 307 ~-~g~~~---~-~~~----------------------------------------------------------------- 316 (607)
T 3bk7_A 307 V-YGIFS---K-PKG----------------------------------------------------------------- 316 (607)
T ss_dssp T-EEEEC---C-CEE-----------------------------------------------------------------
T ss_pred c-cceec---c-chh-----------------------------------------------------------------
Confidence 1 01000 0 000
Q ss_pred hHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHH
Q 037346 638 QEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTA 717 (1156)
Q Consensus 638 ~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1156)
..+. ...++. + . ....
T Consensus 317 ~~~~----------i~~~~~---~--------------------------~-~~~~------------------------ 332 (607)
T 3bk7_A 317 TRNG----------INEFLQ---G--------------------------Y-LKDE------------------------ 332 (607)
T ss_dssp HHHH----------HHHHHH---T--------------------------E-ETTT------------------------
T ss_pred HHHH----------HHHHHh---h--------------------------c-chhh------------------------
Confidence 0000 000000 0 0 0000
Q ss_pred HHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFV 797 (1156)
Q Consensus 718 ~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 797 (1156)
. .|+.. .... ..
T Consensus 333 --------------~-------------~~~~~----~~~~-~~------------------------------------ 344 (607)
T 3bk7_A 333 --------------N-------------VRFRP----YEIR-FT------------------------------------ 344 (607)
T ss_dssp --------------T-------------EECCS----SCCC-CC------------------------------------
T ss_pred --------------h-------------hhccc----cccc-cc------------------------------------
Confidence 0 00000 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037346 798 PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLR 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1156)
T Consensus 345 -------------------------------------------------------------------------------- 344 (607)
T 3bk7_A 345 -------------------------------------------------------------------------------- 344 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEE
Q 037346 878 FCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRY 957 (1156)
Q Consensus 878 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y 957 (1156)
.... . .....+.. .+...... .-+.+.|++++|..
T Consensus 345 --------------------~~~~--~------------------~~~~~~~~--l~~~~l~~---~~~~~~l~~~~~~v 379 (607)
T 3bk7_A 345 --------------------KLSE--R------------------VDVERETL--VEYPRLVK---DYGSFKLEVEPGEI 379 (607)
T ss_dssp --------------------CSTT--S------------------CCCCCCEE--EEECCEEE---ECSSCEEEECCEEE
T ss_pred --------------------cCCC--c------------------ccccCceE--EEEeceEE---EecceEEEeccccc
Confidence 0000 0 00000000 00000000 01234677777777
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchhccCCC--CC-
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRSNLDPL--EE- 1033 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~Nl~~~--~~- 1033 (1156)
++++.++|.||||||||||+++|+|+++|++|+|.+ +.+++||||++.+ ++.|+++|+... ..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 446 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL 446 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccCC
Confidence 888888999999999999999999999999999986 2469999999876 577999998542 11
Q ss_pred CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc--CCceEE
Q 037346 1034 HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVV 1104 (1156)
Q Consensus 1034 ~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI 1104 (1156)
...+.+.++++..++.+.....+..|..+ ||||+++|+||||||||++||+.+...+.+.|+++. .+.|||
T Consensus 447 ~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 526 (607)
T 3bk7_A 447 NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526 (607)
T ss_dssp HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12456788999999988776666666544 899999999999999999999999999999999864 489999
Q ss_pred EeecCcccccc-cCEEEEEeC--cEEeeecChhHHhc
Q 037346 1105 TIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1105 ~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~ 1138 (1156)
+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 527 ~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 527 VVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999875 999999986 88888999998875
No 18
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.9e-54 Score=536.59 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=157.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC-CCCCCCcEE-EEcCeEEEEecCC-c-
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG-GVPKESGII-RLCGTKAYVAQSP-W- 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g-~~~~~~G~i-~~~g~~~~v~Q~~-~- 431 (1156)
..+...|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| .+. |.- .-..+++|++|++ .
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGT 507 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEccccccc
Confidence 3577789999995 4579999999999999999999999999999999994 321 100 0011368999985 3
Q ss_pred CCCccHHHHhhcCCCCCHHHHHHHHHHhCCch-hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 432 IQSGKIEENILFGKEMDRERYERVLEACSLKK-DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
....|+.||+.+...-.+++.+++++.+++.. ..+ ....+||||||||++|||||+.+|++|||||||
T Consensus 508 ~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~-----------~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIA-----------MPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp CTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHH-----------SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred ccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 34569999998621101677888899998853 332 334689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE-EccChHHHHh
Q 037346 511 SPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKIT-QAGKYSDILN 568 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 568 (1156)
++||+.+++++.+.+.. .|+|+|+|||+++++. .||+|++|++|+++ +.|+++++..
T Consensus 577 s~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999887655 7899999999999986 49999999999996 6899888754
No 19
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.3e-55 Score=534.49 Aligned_cols=178 Identities=19% Similarity=0.261 Sum_probs=151.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~ 1026 (1156)
+.|++++|..++++.++|.|+||||||||+++|+|+++|++|+|.+ +.+|+||||++.+ +..|+.+
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHH
Confidence 5677777777888889999999999999999999999999999985 2369999999976 5679999
Q ss_pred ccCCC--CC-CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1027 NLDPL--EE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1027 Nl~~~--~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
|+... .. ...+.+.++++..++.+.....|..|..+ ||||+++|+||||||||++||..+...|.+.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 87532 11 12456788999999987766666666544 8999999999999999999999999999999998
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHhc
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~ 1138 (1156)
+. .+.|||+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 64 38999999999999874 999999996 78888999998875
No 20
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1e-53 Score=535.39 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=127.3
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHH---------------------HHHhCCCCCCCc-------EEEEcCe-
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL---------------------SCILGGVPKESG-------IIRLCGT- 422 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll---------------------~~i~g~~~~~~G-------~i~~~g~- 422 (1156)
...+|+|+||+|++||+++|+||||||||||+ +.+.|+..|+.| .|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 888888888844 4555542
Q ss_pred --------EEEEecCCcC--------------------CCccHHHHhhcCCCCC--H--H-----HHHH------HHHHh
Q 037346 423 --------KAYVAQSPWI--------------------QSGKIEENILFGKEMD--R--E-----RYER------VLEAC 459 (1156)
Q Consensus 423 --------~~~v~Q~~~~--------------------~~~ti~eni~~~~~~~--~--~-----~~~~------~~~~~ 459 (1156)
++|++|.+.+ ...|++||+.+..... + . ..++ .++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 3455554432 2358999998743211 0 0 0011 12223
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIY 535 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~ 535 (1156)
+|.+. ...+...+|||||||||+|||||+.+|+ +|||||||++||+....++++.+.. .+|.|+|+
T Consensus 190 gL~~~----------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 190 GLDYL----------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp TCTTC----------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CCchh----------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 33211 1234567899999999999999999998 9999999999999999999876643 46899999
Q ss_pred EccCCCccccCCEEEEE------eCCeEEEccChHHHHh
Q 037346 536 ATHQVEFLPAADLILVI------KDGKITQAGKYSDILN 568 (1156)
Q Consensus 536 vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 568 (1156)
||||++.+..||+|++| ++|++++.|+++++.+
T Consensus 260 vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 260 VEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp ECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred EeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 99999988789999999 8999999999988764
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.6e-53 Score=471.51 Aligned_cols=261 Identities=27% Similarity=0.406 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCC
Q 037346 319 ISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSG 398 (1156)
Q Consensus 319 ~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 398 (1156)
...+.++.++++|+.++++.++.........+.....+.|+++|++|+|+. +.++|+|+||+|++||+++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 456777889999999999764321111111111123457999999999973 457999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchh
Q 037346 399 KSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKD 464 (1156)
Q Consensus 399 KSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~ 464 (1156)
||||+++|+|+++|++|+|.++|. ++||||+|++|++||+|||.+|.. ...++.+++++.+++.++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999994 799999999999999999999974 567888999999999999
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcc
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~ 543 (1156)
+..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+.. .+++|+|+|||+++.+
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 999999999999999999999999999999999999999999999999999999999876644 4689999999999999
Q ss_pred ccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhh
Q 037346 544 PAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581 (1156)
Q Consensus 544 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 581 (1156)
..||+|++|++|+|++.|+++++++..+.|.+++..+.
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 88999999999999999999999998888888876554
No 22
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.8e-53 Score=508.78 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=149.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr 1025 (1156)
.+.++++++..++++.++|.|+||||||||+++|+|+++|++|+|.++| +.++++||++.. |..|++
T Consensus 281 ~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHH
T ss_pred CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHH
Confidence 3567777777788998999999999999999999999999999999875 358999999864 578999
Q ss_pred hccCCCC----CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1026 SNLDPLE----EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1026 ~Nl~~~~----~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
+|+.... ....+.+.++++.+++.+.....|..|.-+ ||||+++|+||||||||++||+.+...|.+.|
T Consensus 349 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l 428 (538)
T 3ozx_A 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428 (538)
T ss_dssp HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 9985311 122355788899999988777777666544 89999999999999999999999999999999
Q ss_pred HHhc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHh
Q 037346 1095 RQHF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLL 1137 (1156)
Q Consensus 1095 ~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl 1137 (1156)
+++. .++|||+|+|+++.+.. ||||+||++ |.+...++|.++.
T Consensus 429 ~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 429 KRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 8874 47899999999999876 999999986 5566777776654
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-52 Score=508.25 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=148.5
Q ss_pred EEEEEEEEEcCC-----CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccc
Q 037346 949 NIRHLQVRYAPN-----LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEG 1022 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~-----~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~g 1022 (1156)
.++|++|...++ +.++|.|+||||||||+++|+|+.+|++|+. +. +..++++||++. .|.+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCc
Confidence 456667776655 5578999999999999999999999999972 21 346999999975 5788
Q ss_pred cchhccCC--CC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1023 TTRSNLDP--LE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1023 TIr~Nl~~--~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+++|+.. .. ....+...++++..++.+.....|..|.-+ ||||+.+|+||||||||++||+.+...|.+
T Consensus 429 tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 508 (608)
T 3j16_B 429 TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK 508 (608)
T ss_dssp BHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH
Confidence 99998732 11 223566778999999988877777777644 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHhcC
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~~ 1139 (1156)
.|+++. .++|||+|+|+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 509 ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 509 VIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 998864 48999999999999875 999999997 899999999999964
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.7e-49 Score=440.17 Aligned_cols=243 Identities=26% Similarity=0.425 Sum_probs=210.0
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC--------------CCceeeCCCCCC
Q 037346 907 KNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSG 972 (1156)
Q Consensus 907 ~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsG 972 (1156)
.+++..+++++|+.++++.+++... .......++..|.|+|+||+|+|+++ +.++|.||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKD---LPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCC---CTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred hhHHHHHHHHHHHHHHHhCCccccc---cccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 4556677888999988764433211 01111123346789999999999533 334566999999
Q ss_pred HHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChH
Q 037346 973 KSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDE 1051 (1156)
Q Consensus 973 KSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~ 1051 (1156)
||||+++|+|+|+|++|+|.+||.|+.+++.+.+|++|+||||+|.+|++||+|||.++. ..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4568999999999999999
Q ss_pred HHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1052 VRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1052 i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
+..+|+||++. ||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999998854 899999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1114 LDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1114 ~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
..||+|+||++|+|+|.|+|++|+++ +|.|++|++.+..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999975 7999999987653
No 25
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.3e-47 Score=408.30 Aligned_cols=218 Identities=38% Similarity=0.669 Sum_probs=197.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCc
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ 435 (1156)
..++++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|+||+|++++.
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 36999999999963 24679999999999999999999999999999999999999999999999999999999999989
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
||+||+.++......++.++++.+++.+.++.+|.++++.+++++.+||||||||++|||||+++|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999876666667788888999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-h-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchH
Q 037346 516 HTGAHLFKFCW-V-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFM 574 (1156)
Q Consensus 516 ~~~~~i~~~~~-~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 574 (1156)
.+++.+++.++ . .+++|+|++||+++.+..||+|++|++|++++.|+++++.+....+.
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 99999988643 2 35789999999998887799999999999999999999876544443
No 26
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=408.31 Aligned_cols=221 Identities=45% Similarity=0.800 Sum_probs=200.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCcc
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK 436 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~t 436 (1156)
.++++|++|+|+. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|+||+|++++.|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 4899999999963 235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHH
Q 037346 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~ 516 (1156)
++|||.++.....++.+++.+.+++.+.+..+|.|++|.+++++.+|||||||||+|||||+.+|+++||||||++||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 99999998765556677888889998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---h-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 517 TGAHLFKFCW---V-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 517 ~~~~i~~~~~---~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+++.+++.+. . .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+....|.+++.
T Consensus 162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 9999988763 2 358999999999998878999999999999999999999877666666553
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-45 Score=402.16 Aligned_cols=222 Identities=28% Similarity=0.389 Sum_probs=200.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 35999999999942 1357999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|+||+|.+++.||+||+.++.+ .+.++..++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 799999999998999999999753 4567788899999999999999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc-CcchHHHHH
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS-GTDFMELVG 578 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 578 (1156)
+++||||||++||+.+++.+.+.+.. .+|+|+|+|||+++.+..||+|++|++|++++.|+++++... ...|..++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 99999999999999999998876644 468999999999998878999999999999999999999866 455655543
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.9e-45 Score=401.35 Aligned_cols=223 Identities=30% Similarity=0.448 Sum_probs=199.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999643225799999999999999999999999999999999999997 899999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|++|+|.+|+.||+||+.++.. .+++++.++++.+++.+.+..+|.+.+|.+++++.+|||||||||+|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999753 4566778888999999888899999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 579 (1156)
+++||||||++||+.+++.+.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++......|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHh
Confidence 99999999999999999988876644 3579999999999988789999999999999999999998766666665543
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2e-45 Score=401.90 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=196.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|++|+|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~y~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSS--SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeC--CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 78999999995 2457999999999999999999999999999999999999999999999883 68
Q ss_pred EEecCCcCCCccHHHHhhcC-C-CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 425 YVAQSPWIQSGKIEENILFG-K-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|+||+|.+|+.|++|||.++ . ..++++++++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999997 3 356677889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||+|++|++|++++.|+++++......+.+++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 9999999999999999988876643 36899999999999887799999999999999999999876544444444
No 30
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.8e-44 Score=399.61 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=197.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+..++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 4699999999996322357999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCCC-CH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKEM-DR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++||||+|.+|+.||+|||.++... .. ++..+.++..++.+.++.+|.|.++.+++++.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999989999999997532 22 445566677788888999999999999999999999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHhc---CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~~---~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
|++||||||||+||+.+++.+.+.+... .|+|+|+|||+++.+..||+|++|++|++++.|+++++......|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 9999999999999999999998876542 3899999999999887799999999999999999999987666666655
Q ss_pred H
Q 037346 578 G 578 (1156)
Q Consensus 578 ~ 578 (1156)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=407.87 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=197.8
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
...|+++|++|+|+. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 356999999999963 24679999999999999999999999999999999999998 8999999983
Q ss_pred -EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 -KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++||+|++.+|..||+||+.+.....+++.+++++.++|.+.++..|.+++|.+++.|.+|||||||||+|||||+.+|
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999976667788899999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
++||||||||+||+..+..+.+.+.. ..++|+|+|||+++.+..||+|++|++|+|++.|+++++....
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999998876654 3578999999999888889999999999999999999998754
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.1e-43 Score=395.68 Aligned_cols=230 Identities=35% Similarity=0.611 Sum_probs=183.2
Q ss_pred HHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 331 Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
|+.++++.+...... . ........++++|++|.+ +++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~~-~--~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNN-R--KTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhccccccccc-c--cccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 677777654322110 1 111223469999999853 36999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 411 PKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 411 ~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+|++|+|.++|+++|+||+|.+++.|++||+. +......++.++++.+++.+.+..+|.++++.+++++.+||||||||
T Consensus 89 ~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR 167 (290)
T 2bbs_A 89 EPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR 167 (290)
T ss_dssp CEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHH
T ss_pred CCCCcEEEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHH
Confidence 99999999999999999999999899999999 65455556677888899988889999999999999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++|||||+.+|+++||||||++||+.+++.+++.++. .+|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999999876432 35889999999998887799999999999999999999865
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 248 ~ 248 (290)
T 2bbs_A 248 L 248 (290)
T ss_dssp H
T ss_pred h
Confidence 3
No 33
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-42 Score=384.15 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36999999999963 345999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 --KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 --~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|||||+| .++..||+||+.|+.. .+ .++.+++++.++|.+..+ +.+.+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHH
Confidence 79999998 4677899999998632 22 345677888888865433 44578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|||||+.+|++||||||||+||+.++..+++.+.. .+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999998876643 23899999999999986 59999999999999999999987
Q ss_pred hc
Q 037346 568 NS 569 (1156)
Q Consensus 568 ~~ 569 (1156)
..
T Consensus 233 ~~ 234 (275)
T 3gfo_A 233 AE 234 (275)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1e-42 Score=395.28 Aligned_cols=205 Identities=23% Similarity=0.334 Sum_probs=177.7
Q ss_pred CccEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 355 DTAIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
+..|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 35699999999997422 246899999999999999999999999999999999999999999999983
Q ss_pred -----EEEEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -----KAYVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
+|||+|+|.++.. ||+||+.|+.. .+ .++..++++.++|.+..+ ....+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHH
Confidence 7999999988764 99999998631 22 345677888888876544 345789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||+|||||+.+|++||||||||+||+.++..+++.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999886643 34899999999999986 499999999999999999999
Q ss_pred HHhcC
Q 037346 566 ILNSG 570 (1156)
Q Consensus 566 l~~~~ 570 (1156)
++...
T Consensus 251 v~~~p 255 (366)
T 3tui_C 251 VFSHP 255 (366)
T ss_dssp HHSSC
T ss_pred HHhCC
Confidence 98653
No 35
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.3e-43 Score=378.59 Aligned_cols=199 Identities=26% Similarity=0.367 Sum_probs=167.9
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
++++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997322 246999999999999999999999999999999999999999999999982
Q ss_pred ---EEEEecCCcCCCc-cHHHHhhcCC------CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ---KAYVAQSPWIQSG-KIEENILFGK------EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~~-ti~eni~~~~------~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|+|.++.. ||+||+.++. ... .++..++++.+++.+.. ..+.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 8999999998775 9999998742 122 23455666777765432 1345678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||+|||||+.+|+++||||||++||+.++..+++.+.. ..|+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999887644 23899999999998777799999999999999887766
Q ss_pred H
Q 037346 566 I 566 (1156)
Q Consensus 566 l 566 (1156)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 36
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.6e-42 Score=391.04 Aligned_cols=201 Identities=30% Similarity=0.443 Sum_probs=177.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999995 457999999999999999999999999999999999999999999999883
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+|||+|++.+|. .||+|||.|+... ..++.+++++.++|.+..+ +...+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 699999998876 5999999998532 1356778888888876554 3457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||+.+|++||||||||+||+..+..+.+.+.. ..|.|+|+||||++.+. .||+|++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988765433 46899999999998875 5999999999999999999999865
Q ss_pred Cc
Q 037346 570 GT 571 (1156)
Q Consensus 570 ~~ 571 (1156)
..
T Consensus 230 p~ 231 (359)
T 3fvq_A 230 PA 231 (359)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 37
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.4e-42 Score=391.43 Aligned_cols=200 Identities=29% Similarity=0.409 Sum_probs=176.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 457999999999999999999999999999999999999999999999984 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+.. .+ +++.+++++.++|.+..+ +...+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHHH
Confidence 9999998764 99999998632 22 346677888888876544 44578999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..+..+.+.+.. ..|.|+|+||||++.+. .||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999998876643 34899999999998875 59999999999999999999998654
No 38
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.7e-41 Score=373.05 Aligned_cols=199 Identities=27% Similarity=0.373 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred -EEEEecCCcCCCc-cHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 -KAYVAQSPWIQSG-KIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++||+|++.++.. ||+||+.++. ... +++.+++++.++|.+..+ +.+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 7999999988765 9999998852 122 245667788888765433 445789999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998876643 35899999999999886 5999999999999999999988753
No 39
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-41 Score=367.03 Aligned_cols=192 Identities=24% Similarity=0.308 Sum_probs=166.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 489999999996 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 422 --TKAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
.++|++|+|.++. .|++||+.++.. .. .++.+++++.+++.+.. .....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 2799999998775 599999987521 11 34566777777775433 244578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||+|++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999998876643 35899999999998887799999999999998875
No 40
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-41 Score=369.45 Aligned_cols=198 Identities=25% Similarity=0.384 Sum_probs=170.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 589999999996 357999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCC-C-C--C--HHHHHHHHHHhC-CchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGK-E-M--D--RERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~-~-~--~--~~~~~~~~~~~~-l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++|+||+|.++.. |++||+.++. . . . .++.+++++.++ +.+ ..++++.+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 7999999988876 9999999864 1 1 1 233455555552 432 23456789999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998876643 36899999999998764 699999999999999999988864
No 41
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.3e-41 Score=373.29 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 3699999999996 457999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcC-CCccHHHHhhcCCC-----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 423 KAYVAQSPWI-QSGKIEENILFGKE-----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 423 ~~~v~Q~~~~-~~~ti~eni~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
++|++|++.+ +..||+||+.++.. .+.++.+++++.+++.+..+ +...+||||||||++||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 6999999876 56799999998742 23566778888888765432 3446899999999999999
Q ss_pred hcc------CCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 497 LYQ------DADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 497 l~~------~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+. +|++||||||||+||+.++..+++.+.. ..++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 9999999999999999999998876643 33579999999999986 5999999999999999999998
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
.+
T Consensus 236 ~~ 237 (266)
T 4g1u_C 236 LN 237 (266)
T ss_dssp CC
T ss_pred hC
Confidence 75
No 42
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3e-41 Score=371.73 Aligned_cols=195 Identities=21% Similarity=0.320 Sum_probs=169.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCC----------------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEM----------------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~----------------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
++|++|+|.++. .||+||+.++... + .++.+++++.+++.+.. ++.+.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 799999998775 5999999886321 1 23456677777765433 34567
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
+|||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999998876643 35899999999999875 59999999999999
Q ss_pred EccChHH
Q 037346 559 QAGKYSD 565 (1156)
Q Consensus 559 ~~g~~~~ 565 (1156)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
No 43
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-41 Score=369.81 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCC--CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EE
Q 037346 357 AIEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KA 424 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~ 424 (1156)
.++++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 3789999999962111 46999999999999999999999999999999999999999999999983 79
Q ss_pred EEecCC--cCCCccHHHHhhcCCC------CCHHHHHHHHHHhCCc--hhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 425 YVAQSP--WIQSGKIEENILFGKE------MDRERYERVLEACSLK--KDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 425 ~v~Q~~--~~~~~ti~eni~~~~~------~~~~~~~~~~~~~~l~--~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
|++|+| .++..|++||+.++.. ...++++++++.+++. +..+. ...+||||||||++||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHHHH
Confidence 999997 4677899999998632 2246788899999987 55443 3468999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876643 358999999999999875 999999999999999999888653
No 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-41 Score=371.70 Aligned_cols=199 Identities=26% Similarity=0.421 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 599999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ------------EEEEecCCcCCCc-cHHHHhhcCC----CCC----HHHHHHHHHHhCCchh-hhhCCCCCccccccCC
Q 037346 423 ------------KAYVAQSPWIQSG-KIEENILFGK----EMD----RERYERVLEACSLKKD-LEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 ------------~~~v~Q~~~~~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~-~~~~~~g~~t~v~~~g 480 (1156)
++||+|++.++.. ||+||+.++. ... +++.+++++.++|.+. .+ +..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCc
Confidence 7999999988765 9999998842 122 3456778888888765 43 345
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 68999999999999999999999999999999999999998876643 35899999999999886 5999999999999
Q ss_pred EEccChHHHHhc
Q 037346 558 TQAGKYSDILNS 569 (1156)
Q Consensus 558 ~~~g~~~~l~~~ 569 (1156)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
No 45
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=5.2e-41 Score=368.03 Aligned_cols=199 Identities=22% Similarity=0.312 Sum_probs=174.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------K 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~ 423 (1156)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 4699999999995 357999999999999999999999999999999999999999999999883 7
Q ss_pred EEEecCCcCCCc-cHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQSG-KIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|+||+|.++.. |++||+.++. ... .++.+++++.++|.+..+ +++.+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999988765 9999998742 122 245677888888865443 345689999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999998876643 358999999999998865 99999999999999999988864
No 46
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.5e-41 Score=383.42 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=176.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..++++|++++|+ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 13 ~~l~~~~l~~~y~--g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCT--TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred ceEEEEEEEEEEc--CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4699999999993 1357999999999999999999999999999999999999999999999983 79
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
||+|++.+|. .||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||+||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999998876 499999998631 22 346677888888866544 3446899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|+.+|++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999998876643 23899999999998875 59999999999999999999997653
No 47
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.4e-41 Score=383.01 Aligned_cols=200 Identities=25% Similarity=0.316 Sum_probs=176.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+... . +++.+++++.++|.+..++ +..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999988764 999999997532 1 2467788888888765543 4468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998874 69999999999999999999998654
No 48
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.1e-41 Score=383.01 Aligned_cols=200 Identities=30% Similarity=0.348 Sum_probs=174.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-----------RYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999988764 99999998631 22 245677888888765443 34568999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|+++|||||||+||+..+..+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998864 69999999999999999999998653
No 49
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-40 Score=382.08 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=170.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 499999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|. .||+|||.|+... . +++.+++++.++|.+..++ +..+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999998876 5999999998532 2 2456778888888765543 4468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998874 69999999999999999999998654
No 50
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=379.22 Aligned_cols=198 Identities=33% Similarity=0.440 Sum_probs=174.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 35 999999999999999999999999999999999999999999999983 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 427 AQSPWIQSG-KIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+|++.+|.. ||+|||.|+.. ...++.+++++.++|.+..+ ++..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 999988865 99999998631 12367788888888865543 345689999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999998876643 34899999999998864 69999999999999999999998653
No 51
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=362.30 Aligned_cols=195 Identities=25% Similarity=0.363 Sum_probs=168.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999983 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 427 AQSPWIQSG-KIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
||+|.++.. |++||+.++... ++++.+++++.+++.+.. .+...+||||||||++|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 999988765 999999997542 134556677777765433 244568999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999998876643 23899999999998875 5999999999999999999988653
No 52
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.7e-41 Score=381.90 Aligned_cols=200 Identities=27% Similarity=0.346 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCCCC--ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFSSPNP--TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.++++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 489999999996 356 99999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++||+|++.+|.. ||+|||.|+... . +++.+++++.++|.+..+ +...+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 26999999988765 999999997532 2 345677888888876544 3446899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+|||||+.+|++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999998876643 23899999999998875 5999999999999999999999
Q ss_pred HhcC
Q 037346 567 LNSG 570 (1156)
Q Consensus 567 ~~~~ 570 (1156)
....
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8653
No 53
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-40 Score=364.45 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=172.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCC-Cc
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-SG 435 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~-~~ 435 (1156)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||+|.++ ..
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 4899999999951 35799999999999999999999999999999999999999999999888899999999876 56
Q ss_pred cHHHHhhcCCC--------CC---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 436 KIEENILFGKE--------MD---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 436 ti~eni~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
||+||+.++.. .. +++.+++++.+++.+..+ +.+.+||||||||++|||||+.+|+++
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998631 11 245677888888765433 345789999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||||++||+.+++.+.+.+.. .+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999998876643 33 899999999999885 699999999999 99999988764
No 54
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.2e-39 Score=406.65 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=148.0
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHH-Hhhccc-------------------------CCCc-------eEEEcCe
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQT-LFRIVE-------------------------STAG-------HILIDGK 996 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~l-L~rl~~-------------------------p~~G-------~I~idG~ 996 (1156)
++||+|..++++-++|.|+||||||||++. |+|+.. +.+| .|.+||.
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~ 592 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQK 592 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSS
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCe
Confidence 899999999999999999999999999997 776642 2467 7899999
Q ss_pred eCCCCCh----------HHHhhcCeeeccc-------------------------------cccc---------------
Q 037346 997 DISLIGL----------HDLRTRLSIIPQD-------------------------------PTMF--------------- 1020 (1156)
Q Consensus 997 di~~i~~----------~~LR~~i~~VpQd-------------------------------p~LF--------------- 1020 (1156)
++..-+. +.+|+.++.+|++ -.++
T Consensus 593 ~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 593 PIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp CSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred eCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCccc
Confidence 8865443 4455544444321 0111
Q ss_pred ----------cccchhccCC--------CCCCC-HHHHHHHHHHcCCChH-HHhhcCCcccc-------ccccccC---C
Q 037346 1021 ----------EGTTRSNLDP--------LEEHA-DEQIWEALDKCQLGDE-VRKKKGKLDSQ-------GRVLLKK---S 1070 (1156)
Q Consensus 1021 ----------~gTIr~Nl~~--------~~~~~-deei~~al~~~~l~~~-i~~lp~gl~s~-------ARALLr~---~ 1070 (1156)
.-||.||+.. +.... .+++.++|+.++|... ....+..|..+ ||+|+++ |
T Consensus 673 ~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p 752 (842)
T 2vf7_A 673 NAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGG 752 (842)
T ss_dssp CTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSC
T ss_pred chhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCC
Confidence 1244455432 22211 2457788999999763 33334444332 8999996 7
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCCh
Q 037346 1071 KVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSSS 1143 (1156)
Q Consensus 1071 ~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g~ 1143 (1156)
+||||||||++||+.+.+.|.+.|+++. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++.+.
T Consensus 753 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 9999999999999999999999998864 589999999999999999999999 699999999999999765544
Q ss_pred HHHHHH
Q 037346 1144 FAQLVA 1149 (1156)
Q Consensus 1144 f~~l~~ 1149 (1156)
-....+
T Consensus 833 t~~~l~ 838 (842)
T 2vf7_A 833 TAPYLR 838 (842)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 334333
No 55
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.9e-41 Score=370.56 Aligned_cols=199 Identities=26% Similarity=0.362 Sum_probs=170.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4699999999996 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCc--cHHHHhhcCCC--------CC---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 -TKAYVAQSPWI-QSG--KIEENILFGKE--------MD---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 -~~~~v~Q~~~~-~~~--ti~eni~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|++.+ +.. ||+||+.++.. .. .++.+++++.+++.+.. .+...+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 27999999864 444 99999998641 12 23456677777775443 3455789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEE--EEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTV--IYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tv--i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|||||+|||||+.+|++|||||||++||+.+++.+.+.+.. .+|+|+ |+|||+++.+. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999998876643 238899 99999999875 59999999999999999
Q ss_pred ChHHHHh
Q 037346 562 KYSDILN 568 (1156)
Q Consensus 562 ~~~~l~~ 568 (1156)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9988764
No 56
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2e-40 Score=381.10 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=174.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 489999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 ---KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++||+|++.+|. .||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHHH
Confidence 799999998875 599999998631 22 245677888888866544 34468999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|||||+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999998876643 23899999999998875 59999999999999999999998
Q ss_pred hcC
Q 037346 568 NSG 570 (1156)
Q Consensus 568 ~~~ 570 (1156)
...
T Consensus 229 ~~p 231 (372)
T 1g29_1 229 DKP 231 (372)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
No 57
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.4e-39 Score=355.69 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=184.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||||+|.+|++|++||
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence 35677777777777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+.++. ..++++++++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+++.+
T Consensus 103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 98754 345788999999999999999888766532 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
.|.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++++.+.|++++..+
T Consensus 183 ~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp HHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 999999988778999999999999999999999999999999999999976578999998754
No 58
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.5e-40 Score=361.05 Aligned_cols=196 Identities=23% Similarity=0.315 Sum_probs=172.2
Q ss_pred EEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEE-E
Q 037346 358 IEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKA-Y 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~-~ 425 (1156)
++++|++++|+.. ..+++|+|+||+++ |++++|+||||||||||+++|+|++ |++|+|.++| +++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999621 01579999999999 9999999999999999999999999 9999999998 489 9
Q ss_pred EecCCcCCCccHHHHhhcCC---CCCHHHHHHHHHHhCCc-hhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 426 VAQSPWIQSGKIEENILFGK---EMDRERYERVLEACSLK-KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~---~~~~~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+||+|.+ ..|++||+.++. ..++++.+++++.+++. +.. ++++.+||||||||++|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-----------GSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-----------cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 889999998753 34567788888888876 433 3456799999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCC-EEEEEeCCeEEEccChHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AAD-LILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+++||||||++||+.+++.+.+.+..... |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999887755544 9999999999875 699 999999999999999998864
No 59
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.8e-40 Score=356.43 Aligned_cols=193 Identities=23% Similarity=0.347 Sum_probs=171.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|. +
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999986 5899999999999999999999999999999999999999 99999983 7
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
+|++|+|.++.. |++||+.++.. .++++.+++++.+++.+..+ +++.+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 999999987764 99999998742 23667888899888865443 45578999999999999999999
Q ss_pred CC-------eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 501 AD-------IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 501 ~~-------illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|+ ++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999999998876643 35899999999999884 699999999999999999988864
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.8e-40 Score=412.04 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=144.6
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHH---------HHHhhcccC------CCc------eEEEcCeeCCCCCh-----
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLI---------QTLFRIVES------TAG------HILIDGKDISLIGL----- 1003 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~---------~lL~rl~~p------~~G------~I~idG~di~~i~~----- 1003 (1156)
++||+|..++++-++|.|+||||||||+ +++.+...+ .+| .|.+|+.++...+.
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at 679 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPAT 679 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccc
Confidence 6789999999999999999999999997 333333322 233 36666666644321
Q ss_pred -----HHHh-------------------------------hcCeeecccccccc--------------------------
Q 037346 1004 -----HDLR-------------------------------TRLSIIPQDPTMFE-------------------------- 1021 (1156)
Q Consensus 1004 -----~~LR-------------------------------~~i~~VpQdp~LF~-------------------------- 1021 (1156)
+.+| +..|+++|+..++.
T Consensus 680 ~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~ 759 (916)
T 3pih_A 680 YTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGK 759 (916)
T ss_dssp HSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTB
T ss_pred hhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccC
Confidence 1122 23567777765543
Q ss_pred -------ccchhccCCCCCCC-HHHHHHHHHHcCCChHHHhhcCCcccc--------ccccccCC---CEEEEecCCcCC
Q 037346 1022 -------GTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ--------GRVLLKKS---KVLVLDEATASV 1082 (1156)
Q Consensus 1022 -------gTIr~Nl~~~~~~~-deei~~al~~~~l~~~i~~lp~gl~s~--------ARALLr~~---~ILiLDEaTS~L 1082 (1156)
.|+++|+.++.... .++..++|+.+||.......|..-.|+ ||||+++| +||||||||++|
T Consensus 760 ~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGL 839 (916)
T 3pih_A 760 NISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGL 839 (916)
T ss_dssp CHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTC
T ss_pred CHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCC
Confidence 34555555444332 345778888999864322222222333 89999875 799999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1083 DTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
|+.+.+.|++.|+++. +++|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++++...+++
T Consensus 840 D~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l 912 (916)
T 3pih_A 840 HFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFL 912 (916)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHH
Confidence 9999999999998874 589999999999999999999999 89999999999999987655544444
No 61
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3e-39 Score=354.22 Aligned_cols=194 Identities=25% Similarity=0.252 Sum_probs=161.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT------------ 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~------------ 422 (1156)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 489999999996 35799999999999999999999999999999999998 8899999999983
Q ss_pred --EEEEecCCcCCCc-cHHHHhhcCC------CCC----HHHHHHHHHHhCCc-hhhhhCCCCCccccccCCCC-CCHHH
Q 037346 423 --KAYVAQSPWIQSG-KIEENILFGK------EMD----RERYERVLEACSLK-KDLEVLPFGDQTIIGERGIN-LSGGQ 487 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~-ti~eni~~~~------~~~----~~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g~~-LSgGq 487 (1156)
++|++|+|.++.. |++||+.++. ... .++..++++.+++. +..+ ....+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-----------RYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-----------SBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----------CCcccCCCHHH
Confidence 5799999988765 9999998642 111 23556677777774 3332 23356 99999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEEccCh
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~ 563 (1156)
|||++|||||+.+|+++|||||||+||+.+++.+.+.+.. .+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999887644 358999999999998875 599999999999999998
Q ss_pred H
Q 037346 564 S 564 (1156)
Q Consensus 564 ~ 564 (1156)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
No 62
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4e-39 Score=356.30 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=166.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe-----------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT----------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~----------- 422 (1156)
..++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3699999999995 35799999999999999999999999999999999999 5789999999983
Q ss_pred ---EEEEecCCcCCCc-cHHHHhhcCC----------CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CC
Q 037346 423 ---KAYVAQSPWIQSG-KIEENILFGK----------EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NL 483 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~~-ti~eni~~~~----------~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~L 483 (1156)
++|++|+|.++.. |++||+.++. ..+ .++.+++++.+++...+. ..... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL----------TRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT----------TSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh----------cCCcccCC
Confidence 7899999987765 9999986531 112 234556677776643211 12233 59
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~ 559 (1156)
||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887654 348999999999998864 89999999999999
Q ss_pred ccChHHHH
Q 037346 560 AGKYSDIL 567 (1156)
Q Consensus 560 ~g~~~~l~ 567 (1156)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987764
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-39 Score=341.78 Aligned_cols=185 Identities=22% Similarity=0.301 Sum_probs=157.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEe
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVA 427 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~ 427 (1156)
..++++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+|
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 3699999999995 3 7999999999999999999999999999999999999999999999983 79999
Q ss_pred cCCcCCCc-cHHHHhhcCC-----CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 428 QSPWIQSG-KIEENILFGK-----EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 428 Q~~~~~~~-ti~eni~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
|+|.++.. |++||+.++. ..++++.+++++.+++.+. ++++.+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99988765 9999998752 2235677788888776432 3456789999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|+. .+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999998876643 247899999999999876 777664 44555
No 64
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3e-38 Score=347.87 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++| +|+|.+||.|+.+++...+|++|+||||+|.+|++|+++|+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 46777777777777788899999999999999999987 89999999999999888999999999999999999999999
Q ss_pred CCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1029 DPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1029 ~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
.++. ...++++.++++.+++.+++..+|+++++. ||||+++|+|||||||||+||+.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 193 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 7653 345778999999999999998888766531 899999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1090 I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
+.+.|++..+++|||+|||+++.+..||+|++|++|+|++.|+|+++++. .+.|.+++..+..
T Consensus 194 i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 256 (260)
T 2ghi_A 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQSG 256 (260)
T ss_dssp HHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhhhh
Confidence 99999998778999999999999989999999999999999999999975 6889998876543
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-39 Score=351.43 Aligned_cols=203 Identities=31% Similarity=0.537 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|++|||+|.+|.+|++|||
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 58999999999988899999999999999999999999999999999999988888889999999999999999999999
Q ss_pred CCC-C-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1029 DPL-E-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1029 ~~~-~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
.++ . ..++++++++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~ 176 (243)
T 1mv5_A 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176 (243)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 875 2 356788999999999999998888766532 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHh
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
.|.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+|++++++ .+.|++++..+.
T Consensus 177 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~ 239 (243)
T 1mv5_A 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQL 239 (243)
T ss_dssp HHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhhh
Confidence 999999987778999999999999888999999999999999999999875 567888876543
No 66
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=365.40 Aligned_cols=207 Identities=37% Similarity=0.642 Sum_probs=187.9
Q ss_pred CCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh
Q 037346 939 NNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL 1003 (1156)
Q Consensus 939 ~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1003 (1156)
...||..+.|+++||+++|+.+. .++|.||||||||||+++|+|+++ ++|+|.+||.|+.+++.
T Consensus 11 ~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp -CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH
T ss_pred CcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh
Confidence 44588888999999999995332 234669999999999999999998 99999999999999999
Q ss_pred HHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc----------cc--------ccc
Q 037346 1004 HDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD----------SQ--------GRV 1065 (1156)
Q Consensus 1004 ~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~----------s~--------ARA 1065 (1156)
+.+|+.|++|||++.+|.+|+++|+.++....+++++++++.+++.+++...|.+++ |+ |||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999987777778999999999999999999998843 22 899
Q ss_pred cccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1066 LLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|+++|+|||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+|+++++...|.
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999998777665
Q ss_pred H
Q 037346 1146 Q 1146 (1156)
Q Consensus 1146 ~ 1146 (1156)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.8e-38 Score=348.13 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=173.7
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++|+||||+|.+|.+|++|||.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA 114 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence 33334443444445677999999999999999999999999999999999888888999999999999999999999997
Q ss_pred CCCC-CCH-HHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1030 PLEE-HAD-EQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1030 ~~~~-~~d-eei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++.. ..+ +++.++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 194 (271)
T 2ixe_A 115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194 (271)
T ss_dssp TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 6532 333 67888888889988888877666432 899999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
|.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.|++++++++ .+.|.++++.+
T Consensus 195 i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 257 (271)
T 2ixe_A 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEAL 257 (271)
T ss_dssp HHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHHh
Confidence 9999998754 8999999999999988999999999999999999999975 58899988754
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=2.9e-36 Score=375.06 Aligned_cols=193 Identities=22% Similarity=0.315 Sum_probs=142.2
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHh-hcc----c---CCCc-------------eEEEcCeeCCCCCh-----
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLF-RIV----E---STAG-------------HILIDGKDISLIGL----- 1003 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~-rl~----~---p~~G-------------~I~idG~di~~i~~----- 1003 (1156)
++||+|..++++-++|.|+||||||||++.|+ +.. . +..| .|.+||.+|..-+.
T Consensus 640 Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pat 719 (972)
T 2r6f_A 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPAT 719 (972)
T ss_dssp CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHH
T ss_pred cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchh
Confidence 78899999999999999999999999999864 221 1 1233 48899988753221
Q ss_pred -----HHHh---------hcCeeecccccc---------------------c----------------------------
Q 037346 1004 -----HDLR---------TRLSIIPQDPTM---------------------F---------------------------- 1020 (1156)
Q Consensus 1004 -----~~LR---------~~i~~VpQdp~L---------------------F---------------------------- 1020 (1156)
+..| +.+||+||...+ |
T Consensus 720 y~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~ 799 (972)
T 2r6f_A 720 YTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGK 799 (972)
T ss_dssp HHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTB
T ss_pred hhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCC
Confidence 1222 346888885321 1
Q ss_pred ------cccchhccCCCCCCC-HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCC---CEEEEecCCcCC
Q 037346 1021 ------EGTTRSNLDPLEEHA-DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKS---KVLVLDEATASV 1082 (1156)
Q Consensus 1021 ------~gTIr~Nl~~~~~~~-deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~---~ILiLDEaTS~L 1082 (1156)
.-|+.+|+.++.... .++..++|+.++|.. .....+..|..+ ||||+++| +||||||||++|
T Consensus 800 sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 879 (972)
T 2r6f_A 800 NIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879 (972)
T ss_dssp CHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred CHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence 113334443332222 234668899999976 444444444433 89999875 999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCC
Q 037346 1083 DTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g 1142 (1156)
|+.+.+.|.+.|+++. +++|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++.+
T Consensus 880 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~ 946 (972)
T 2r6f_A 880 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 946 (972)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchh
Confidence 9999999999998764 589999999999999999999999 68999999999999976543
No 69
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.2e-35 Score=368.52 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=138.5
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHh-hc----cc---CCCce-------------EEEcCeeCCCCC---h--
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLF-RI----VE---STAGH-------------ILIDGKDISLIG---L-- 1003 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~-rl----~~---p~~G~-------------I~idG~di~~i~---~-- 1003 (1156)
++||+|..++++-++|.|+||||||||+++|+ +. .. +..|. |.+||.++..-+ +
T Consensus 658 Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pat 737 (993)
T 2ygr_A 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPAT 737 (993)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHH
T ss_pred ccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhh
Confidence 68899999999999999999999999999854 22 21 23343 566666664221 1
Q ss_pred -----HHHh---------hcCeeecccccc---------------------c----------------------------
Q 037346 1004 -----HDLR---------TRLSIIPQDPTM---------------------F---------------------------- 1020 (1156)
Q Consensus 1004 -----~~LR---------~~i~~VpQdp~L---------------------F---------------------------- 1020 (1156)
+..| +..+|+||...+ |
T Consensus 738 y~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~ 817 (993)
T 2ygr_A 738 YTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGK 817 (993)
T ss_dssp HHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTB
T ss_pred hhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCC
Confidence 1222 346777775321 1
Q ss_pred ------cccchhccCCCCCCC-HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCC---CEEEEecCCcCC
Q 037346 1021 ------EGTTRSNLDPLEEHA-DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKS---KVLVLDEATASV 1082 (1156)
Q Consensus 1021 ------~gTIr~Nl~~~~~~~-deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~---~ILiLDEaTS~L 1082 (1156)
.-|+.+|+.++.... .++..++|+.++|.. .....+..|..+ ||||+++| +||||||||++|
T Consensus 818 si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 897 (993)
T 2ygr_A 818 TVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGL 897 (993)
T ss_dssp CHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTC
T ss_pred CHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCC
Confidence 012233333222221 234567888888876 344444444333 89999875 999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCC
Q 037346 1083 DTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g 1142 (1156)
|+.+.+.|.+.|+++. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++.+
T Consensus 898 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~ 964 (993)
T 2ygr_A 898 HFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPAS 964 (993)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHH
Confidence 9999999999998764 589999999999999999999999 68999999999999976543
No 70
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.8e-36 Score=339.36 Aligned_cols=196 Identities=24% Similarity=0.383 Sum_probs=167.3
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH---hhcCeeeccccccccc-cchh
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L---R~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
+||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+..++.+++ |++||+|||++.+|.. |+++
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~e 124 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHH
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHH
Confidence 33333333444456779999999999999999999999999999999999987654 7889999999999876 9999
Q ss_pred ccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+. ...+ .+.+.++|+.+||.+.....|..|..+ ||||+.+|+|||||||||+||+.+.+.|.+
T Consensus 125 nv~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~ 204 (366)
T 3tui_C 125 NVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204 (366)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 99642 1122 346889999999999888888877655 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
.|+++. .++|||+|||+++.+.. ||||+||++|+|++.|++++++.++...|.+
T Consensus 205 lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 998874 38999999999999875 9999999999999999999999877666643
No 71
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-35 Score=328.78 Aligned_cols=192 Identities=24% Similarity=0.345 Sum_probs=167.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeecccc--cccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDP--TMFEGT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp--~LF~gT 1023 (1156)
..++||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++||+|||+| .+|..|
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 3678888888888888899999999999999999999999999999999994 344567899999999998 578899
Q ss_pred chhccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.++ ...+ .+.+.++++.+++.+.....|..|..+ ||||+.+|+|||||||||+||+.+.+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 99999642 1122 345889999999988877777777654 899999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1090 IQQTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1090 I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.+.|+++. +++|||+|||+++.+.. ||||++|++|+|++.|++++++.+
T Consensus 182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999998865 38999999999999875 999999999999999999999864
No 72
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.5e-35 Score=321.59 Aligned_cols=190 Identities=19% Similarity=0.297 Sum_probs=164.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeeccccccccc-
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~g- 1022 (1156)
..++||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++|++|||+|.+|.+
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 47899999999999899999999999999999999999999999999999999987764 4579999999999987
Q ss_pred cchhccCCC------CCCC----HHHHHHHHHHcCCChHH-HhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1023 TTRSNLDPL------EEHA----DEQIWEALDKCQLGDEV-RKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1023 TIr~Nl~~~------~~~~----deei~~al~~~~l~~~i-~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
|++||+.+. .... .+++.++++.+++.+.. ...|..|..+ ||||+++|+|||||||||+||+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999998531 1222 34578899999998754 5556666544 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHh
Q 037346 1085 ATDNQIQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
.+...|.+.|+++.+ ++|||+|||+++....||+|++|++|+|++.|+++++.
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999988753 89999999999988889999999999999999988764
No 73
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=320.09 Aligned_cols=190 Identities=17% Similarity=0.342 Sum_probs=164.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.+|| +++||||+|.+|+.|+++|
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~en 85 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLREN 85 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHH
Confidence 357888888888888889999999999999999999999999999999 3999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc-----------c-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS-----------Q-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s-----------~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
|.++....+++..++++.+++.+.+..+|.++++ + ||||+++|+|||||||||+||+++.+.
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 86 ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165 (237)
T ss_dssp HHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred hhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 9876544445667788888887777655544321 1 899999999999999999999999999
Q ss_pred HHHHHH---HhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1090 IQQTLR---QHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1090 I~~~l~---~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
+.+.|. +..+++|+|+|||+++.+..||+|++|++|+|++.|+|++++++ .+.|.+++..+
T Consensus 166 i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 229 (237)
T 2cbz_A 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRTY 229 (237)
T ss_dssp HHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHHH
Confidence 999984 34468999999999999988999999999999999999999975 68898888754
No 74
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.1e-35 Score=319.53 Aligned_cols=196 Identities=23% Similarity=0.371 Sum_probs=166.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeeccccccccc-cch
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++. ..+...+|++|+||||++.+|.. |++
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 118 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence 455555555566667788999999999999999999999999999999985 34556788999999999999987 999
Q ss_pred hccCCC----CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDPL----EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~~----~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
||+.++ .... ++++.++++.+++.++....|..|..+ ||||+.+|++||||||||+||+.+.+.+
T Consensus 119 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~ 198 (263)
T 2olj_A 119 NNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198 (263)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 999652 1222 346889999999988877777766644 8999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1091 QQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1091 ~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.+.|+++. +++|||+|||+++.+. -||+|++|++|+|++.|+++++++++...+
T Consensus 199 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 254 (263)
T 2olj_A 199 LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHER 254 (263)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99998864 4789999999999987 499999999999999999999997654433
No 75
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.7e-35 Score=321.23 Aligned_cols=192 Identities=18% Similarity=0.270 Sum_probs=169.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr 1025 (1156)
...++||||+.++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+.+.+|+.+++|+|++.+ |..|++
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence 3457777777778888889999999999999999999999999999999999999999999999999999976 677999
Q ss_pred hccCCCC-----CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------cccccc------CCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLE-----EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLK------KSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~-----~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr------~~~ILiLDEaTS~LD~~te 1087 (1156)
||+.++. ...++++.++++.+++.+.....|..|..+ ||||++ +|++||||||||+||+.+.
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~ 183 (266)
T 4g1u_C 104 EVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183 (266)
T ss_dssp HHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred HHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence 9996431 223567899999999988777777666544 899999 9999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
..+.+.|+++.+ ++|||+|||+++.+. .||||+||++|+|++.|++++++.
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 999999988743 469999999999987 599999999999999999999985
No 76
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.1e-34 Score=313.79 Aligned_cols=187 Identities=19% Similarity=0.325 Sum_probs=160.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||+|+.++++.++|.||||||||||+++|+|+++|++|+|.++| +|+||||+|.+|++|++||
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~en 88 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKEN 88 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHH
Confidence 357778888778887889999999999999999999999999999998 4999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc----------c--------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS----------Q--------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s----------~--------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+.++....+....++++.+++.+++..+|.+.++ + ||||+++|++||||||||+||+++.+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 89 IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred hhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 9876544555677888899998888877754431 1 899999999999999999999999999
Q ss_pred HHHH-HHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1090 IQQT-LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1090 I~~~-l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 9997 4555568999999999999888999999999999999999999864 45566554
No 77
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.8e-34 Score=327.89 Aligned_cols=201 Identities=21% Similarity=0.309 Sum_probs=172.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC--CChHHHhhcCeeeccccccccc-c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~g-T 1023 (1156)
...++||||..++++-++|.||||||||||+++|+|+.+|++|+|.+||.|+.+ ......|++||+|+|++.||.. |
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 346788888888888888999999999999999999999999999999999933 2334457889999999999965 9
Q ss_pred chhccCCCCC----CC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLEE----HA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~~----~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++||+.++-. .. ++++.++++.++|.++....|..|..+ ||||+.+|+|||||||||+||+.+...
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999976421 11 356889999999999888888877655 899999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHH
Q 037346 1090 IQQTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147 (1156)
Q Consensus 1090 I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l 1147 (1156)
+++.|.+.. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++...|...
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~ 237 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHH
Confidence 988776543 48999999999988764 99999999999999999999998877666544
No 78
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.8e-35 Score=315.77 Aligned_cols=188 Identities=23% Similarity=0.358 Sum_probs=166.8
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhcc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNL 1028 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl 1028 (1156)
++||||..++ +.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++|++|||++.+|.. |++||+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 8999999998 888999999999999999999999999999999999997643 457889999999999987 999999
Q ss_pred CCCCCC-----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1029 DPLEEH-----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1029 ~~~~~~-----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
.+.... .++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 764321 1456889999999988877777777654 8999999999999999999999999999999988
Q ss_pred hcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1097 HFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+ ++|||+|||+++.+. .||+|++|++|++++.|+++++++++
T Consensus 172 l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 743 799999999999875 59999999999999999999998765
No 79
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-34 Score=315.66 Aligned_cols=189 Identities=19% Similarity=0.357 Sum_probs=164.1
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.. ....+|++|+||||+|.+|.+ |++||
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 4555555555667677889999999999999999999999999999999987 556788999999999999887 99999
Q ss_pred cCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+.++. ... ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+...+.+.
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 96521 122 246889999999998887777766654 8999999999999999999999999999999
Q ss_pred HHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1094 LRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1094 l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 189 l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 98874 47899999999999876 99999999999999999999975
No 80
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-34 Score=316.66 Aligned_cols=197 Identities=23% Similarity=0.341 Sum_probs=169.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----------CCh---HHHhhcCeeec
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----------IGL---HDLRTRLSIIP 1014 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----------i~~---~~LR~~i~~Vp 1014 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.. ++. ..+|+++++||
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 46788888888888888999999999999999999999999999999999862 443 35688999999
Q ss_pred cccccccc-cchhccCCC----CCCC----HHHHHHHHHHcCCChH-HHhhcCCcccc-------ccccccCCCEEEEec
Q 037346 1015 QDPTMFEG-TTRSNLDPL----EEHA----DEQIWEALDKCQLGDE-VRKKKGKLDSQ-------GRVLLKKSKVLVLDE 1077 (1156)
Q Consensus 1015 Qdp~LF~g-TIr~Nl~~~----~~~~----deei~~al~~~~l~~~-i~~lp~gl~s~-------ARALLr~~~ILiLDE 1077 (1156)
|++.+|.. |+++|+.++ .... ++++.++++.+++.++ ....|..|..+ ||||+.+|+||||||
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999877 999999652 1122 3468899999999998 77777777654 899999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1078 ATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1078 aTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|||+||+.+.+.+.+.|+++. +++|||+|||+++.+. -||+|++|++|+|++.|+++++++++...+
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHH
Confidence 999999999999999998864 4789999999999986 599999999999999999999987654433
No 81
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-34 Score=315.11 Aligned_cols=191 Identities=19% Similarity=0.351 Sum_probs=164.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TIr 1025 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++++||||+|.+|.+ |++
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 45778888878888888999999999999999999999999999999999998887665 4559999999999987 999
Q ss_pred hccCCCC----CCC--HHHHHHHHHHcC-CChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE----EHA--DEQIWEALDKCQ-LGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~----~~~--deei~~al~~~~-l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
||+.++. ... ++.+.++++..+ +.+.....|..|..+ ||||+++|+|||||||||+||+.+.+.+.
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 9996532 111 345677888884 877766666666644 89999999999999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9998875 5899999999998764 599999999999999999999985
No 82
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.7e-34 Score=330.07 Aligned_cols=198 Identities=18% Similarity=0.309 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++||||..++++-++|.||||||||||+++|+|+++|++|+|.+||.++...+.. ++.|++|+|++.||.. |++
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHH
Confidence 3467888888888888889999999999999999999999999999999999988876 4679999999999976 999
Q ss_pred hccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
|||.++ ...+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+...+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 999753 1122 356889999999999888888877655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++...|..
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 99988743 8999999999988764 9999999999999999999999887766654
No 83
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-34 Score=317.48 Aligned_cols=191 Identities=22% Similarity=0.308 Sum_probs=169.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTI 1024 (1156)
...++||||+.++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+. .+|++|++|||+| .++..|+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCcH
Confidence 3478999999999998899999999999999999999999999999999998753 6788999999997 5678899
Q ss_pred hhccCCCC------CCCHHHHHHHHHHcCCC--hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1025 RSNLDPLE------EHADEQIWEALDKCQLG--DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1025 r~Nl~~~~------~~~deei~~al~~~~l~--~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+||+.++. ...++++.++++.+++. ++....|..|..+ ||||+++|+|||||||||+||+.+.+.
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 99996431 12256789999999999 8888878777655 899999999999999999999999999
Q ss_pred HHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1090 IQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1090 I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 999998874 48899999999999876 9999999999999999999998643
No 84
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.9e-34 Score=314.61 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=171.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++||||++.+|.+ |++||
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 489999999999999999999999999999999999999 9999999999988889999999999999998875 99999
Q ss_pred cCCCCC--CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCC-------EEEEecCCcCCCHHHHHHHH
Q 037346 1028 LDPLEE--HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSK-------VLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1028 l~~~~~--~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~-------ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+.++.. ..++++.++++.+++.++....|..|..+ ||||+++|+ +||||||||+||+.+.+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 976431 23778999999999998887777666654 899999999 99999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+++. +++|||+|||+++.+ ..||+|++|++|++++.|+++++++
T Consensus 174 ~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9998874 488999999999998 5699999999999999999999975
No 85
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-34 Score=324.55 Aligned_cols=196 Identities=19% Similarity=0.304 Sum_probs=172.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 467888888888888889999999999999999999999999999999999887754 6789999999999976 9999
Q ss_pred ccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++.. .. ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 9976321 11 356889999999999888888777655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|+++++++...|.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9988643 789999999998875 5999999999999999999999987665553
No 86
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.1e-34 Score=314.07 Aligned_cols=187 Identities=23% Similarity=0.284 Sum_probs=161.0
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccccccc-ccchh
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++|++|||++.+|. .|++|
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 4566666666777778889999999999999999999999999999999988765 346788999999999886 59999
Q ss_pred ccCCCC-----C-----------CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCC
Q 037346 1027 NLDPLE-----E-----------HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEAT 1079 (1156)
Q Consensus 1027 Nl~~~~-----~-----------~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaT 1079 (1156)
|+.+.. . .. .+++.++++.+++.+.....|..|..+ ||||+++|+||||||||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 181 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 986421 1 11 245889999999988877777666654 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhH
Q 037346 1080 ASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1080 S~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
|+||+.+.+.|.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus 182 s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999998864 3799999999999886 599999999999999999999
No 87
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.4e-33 Score=323.42 Aligned_cols=196 Identities=19% Similarity=0.324 Sum_probs=164.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 356666666677777788899999999999999999999999999999999887754 5789999999999975 9999
Q ss_pred ccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++-. .. ++++.++++.++|.++....|..|..+ ||||+++|++||||||||+||+.+...+.+
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 182 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 182 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 9976422 22 246889999999999888888777755 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|++++.++...|.
T Consensus 183 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 183 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9988643 789999999998875 5999999999999999999999987665553
No 88
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.3e-34 Score=325.14 Aligned_cols=194 Identities=23% Similarity=0.380 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|++|||++.+|.. |++||
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 107 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDN 107 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHHH
Confidence 3566666666666677889999999999999999999999999999999987664 47889999999999976 99999
Q ss_pred cCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+.++ ...+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+.+.+.
T Consensus 108 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 108 VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187 (355)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9652 1122 356889999999999888888777655 8999999999999999999999999999999
Q ss_pred HHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1094 LRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1094 l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++...|
T Consensus 188 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 988753 7899999999988764 99999999999999999999998765555
No 89
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.5e-34 Score=317.05 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeecccccc-ccc--c
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDPTM-FEG--T 1023 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp~L-F~g--T 1023 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++|++|||++.+ |.. |
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~lt 115 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGER 115 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSB
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCC
Confidence 344444444566667788999999999999999999999999999999998 77888899999999999975 555 9
Q ss_pred chhccCCCC--------CCC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1024 TRSNLDPLE--------EHA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1024 Ir~Nl~~~~--------~~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
++||+.++. ... .+++.++++.+++.+.....|..|..+ ||||+++|+|||||||||+||+.
T Consensus 116 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~ 195 (279)
T 2ihy_A 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195 (279)
T ss_dssp HHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 999996531 112 246889999999988877767666644 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CceE--EEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1086 TDNQIQQTLRQHFS-DCTV--VTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1086 te~~I~~~l~~~~~-~~Tv--I~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+.+.+.|+++.+ ++|| |+|||+++.+. .||+|++|++|+|++.|+++++++
T Consensus 196 ~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999988643 7899 99999999885 599999999999999999999875
No 90
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7e-34 Score=323.39 Aligned_cols=195 Identities=19% Similarity=0.339 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|++|||++.+|.. |++||
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 7899999999999889999999999999999999999999999999999987654 47889999999999986 99999
Q ss_pred cCCC----CCCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1028 LDPL----EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1028 l~~~----~~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
+.++ +...++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9653 1122378999999999999888888777755 8999999999999999999999999999999988
Q ss_pred hcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1097 HFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
+.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|+++++++...|.
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 743 789999999998764 5999999999999999999999987665553
No 91
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.9e-34 Score=308.31 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=162.0
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---Hh-hcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LR-TRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR-~~i~~VpQdp~LF~g 1022 (1156)
...++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+... +| +++++|||+|.+|..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 34678888888888888899999999999999999999999999999999998887653 44 789999999998864
Q ss_pred -cchhccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|++||+.+.. .. .++++.++++.+++.+.....|..|..+ ||||+.+|++||||||||+||+++.
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 9999986421 11 1356889999999988877777777654 8999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1088 NQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1088 ~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
+.+.+.|+++. +++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 177 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999998874 4899999999999888899999999999999986
No 92
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.6e-34 Score=325.49 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=172.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHH
Confidence 468888988888888899999999999999999999999999999999999987764 5789999999999976 9999
Q ss_pred ccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++ .... ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+...+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 99653 1122 356889999999999888888777655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 9988743 789999999998875 5999999999999999999999987665553
No 93
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5e-34 Score=326.02 Aligned_cols=197 Identities=16% Similarity=0.266 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC---hHHHhhcCeeeccccccccc-cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|++|++|||++.+|.. |+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 688888888888888899999999999999999999999999999999987621 33457889999999999976 99
Q ss_pred hhccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
++|+.++.. .. ++++.++++.++|.++....|..|..+ ||||+++|+|||||||||+||+.+...+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 999975321 22 356889999999999888888777655 8999999999999999999999999999
Q ss_pred HHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1091 QQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1091 ~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.+.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|++++.++...|.
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 999988743 789999999998875 4999999999999999999999987665553
No 94
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4.1e-33 Score=305.49 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=159.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc--ccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI--VESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g- 1022 (1156)
...++||||+..+++.++|.||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |+.+++|||+|.+|.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 3468888888888888889999999999999999999 89999999999999998887765 4569999999999986
Q ss_pred cchhccCCC-----C-CCC----HHHHHHHHHHcCCC-hHHHhhcCC-cccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1023 TTRSNLDPL-----E-EHA----DEQIWEALDKCQLG-DEVRKKKGK-LDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1023 TIr~Nl~~~-----~-~~~----deei~~al~~~~l~-~~i~~lp~g-l~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
|+++|+.+. + ... ++++.++++.+++. +.....|.. |..+ ||||+++|+|||||||||+||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 999998532 1 111 35688899999994 666666665 6544 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCceEEEeecCcccccc--cCEEEEEeCcEEeeecChhH
Q 037346 1084 TATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD--SAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 176 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999875 47899999999999886 59999999999999999983
No 95
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.5e-33 Score=322.17 Aligned_cols=196 Identities=18% Similarity=0.362 Sum_probs=170.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC------CChHHHhhcCeeecccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL------IGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+ ++.. +++|+||||++.+|.
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~~ 94 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCCT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccCC
Confidence 46788888888888888999999999999999999999999999999999876 5543 678999999999996
Q ss_pred c-cchhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1022 G-TTRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1022 g-TIr~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
. |+++|+.++. ... ++++.++++.++|.++....|..|..+ ||||+++|++||||||||+||+.+
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 4 9999997531 122 346889999999998888888777654 899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1087 DNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1087 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
...+.+.|+++.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|.
T Consensus 175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHH
Confidence 9999999988653 789999999998875 5999999999999999999999987666553
No 96
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.98 E-value=6.1e-33 Score=339.08 Aligned_cols=198 Identities=22% Similarity=0.227 Sum_probs=168.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC-CC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI-QS 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~-~~ 434 (1156)
..++++|+++.|. + ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+..+++|+||++.. +.
T Consensus 356 ~~l~~~~l~~~~~---~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRLVKDYG---S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCEEEECS---S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeceEEEec---c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 4689999999995 2 47999999999999999999999999999999999999999999988889999999865 56
Q ss_pred ccHHHHhhcC-C-C-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG-K-E-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~-~-~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.||.||+... . . .+.++.+++++.+++.+.. .+...+|||||||||+|||||+.+|++|||||||+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-----------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999998753 1 1 1234556677777765332 34457899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~ 568 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++++. .||+|++|++ |++...|+++++..
T Consensus 501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999988876643 35899999999999986 5999999986 88888899988764
No 97
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=7.9e-33 Score=304.08 Aligned_cols=184 Identities=21% Similarity=0.320 Sum_probs=164.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCe-eeccccccccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS-IIPQDPTMFEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~-~VpQdp~LF~gTIr 1025 (1156)
...++||+|..+ ++.++|.||||||||||+++|+|++ |++|+|.++|.++.+. .. |++++ ||||+|.+ ..|++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcHH
Confidence 347899999999 9989999999999999999999999 9999999999998765 33 78899 99999999 89999
Q ss_pred hccCCCC---CCCHHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1026 SNLDPLE---EHADEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1026 ~Nl~~~~---~~~deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
||+.++. ...++++.++++..++. +.....|..|..+ ||||+++|++||||||||+||+++.+.+.+.|
T Consensus 92 enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence 9996532 34577899999999998 8777767666654 89999999999999999999999999999999
Q ss_pred HHhcCCceEEEeecCccccc-ccC-EEEEEeCcEEeeecChhHHhc
Q 037346 1095 RQHFSDCTVVTIAHRITSVL-DSA-MVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1095 ~~~~~~~TvI~IaHrl~ti~-~~D-~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 172 ~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 172 KEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 98754 9999999999875 699 999999999999999999984
No 98
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.98 E-value=3.4e-33 Score=308.82 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=157.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc--ccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI--VESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TI 1024 (1156)
.++||||..++++.++|.||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |+.+++|||+|.+|.+ |+
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 45555555556666778899999999999999999 57999999999999998887665 4569999999999876 88
Q ss_pred hhccCCC--------C--CCC----HHHHHHHHHHcCCCh-HHHhhcCC-cccc-------ccccccCCCEEEEecCCcC
Q 037346 1025 RSNLDPL--------E--EHA----DEQIWEALDKCQLGD-EVRKKKGK-LDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1025 r~Nl~~~--------~--~~~----deei~~al~~~~l~~-~i~~lp~g-l~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
++|+... . ..+ ++++.++++.+++.+ .....|.. |..+ ||||+++|+|||||||||+
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 8887431 1 122 245889999999964 44555543 5544 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc--cCEEEEEeCcEEeeecChhHHhc
Q 037346 1082 VDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD--SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 99999999999999874 47899999999999876 89999999999999999998753
No 99
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.98 E-value=6.1e-33 Score=336.07 Aligned_cols=198 Identities=22% Similarity=0.232 Sum_probs=165.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC-CC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI-QS 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~-~~ 434 (1156)
..++++|+++.|. + ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.. +.
T Consensus 286 ~~l~~~~l~~~~~---~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRLVKDYG---S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCEEEEET---T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeEEEEEC---C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 4689999999995 2 46999999999999999999999999999999999999999999988889999999865 56
Q ss_pred ccHHHHhhcC-C-C-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG-K-E-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~-~-~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.||.||+... . . .+.++.+++++.+++.+ ...+...+|||||||||+|||||+.+|++|||||||+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999988643 1 1 12333444555444432 2345567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~ 568 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++++. .||+|++|++ |++...|+++++..
T Consensus 431 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999998876643 34899999999999986 5999999986 78888899988764
No 100
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.98 E-value=1e-32 Score=307.39 Aligned_cols=183 Identities=20% Similarity=0.348 Sum_probs=158.9
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+|| +|+||||+|.+|.+|++||+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl 119 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHh
Confidence 58888999889998899999999999999999999999999999998 49999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc----------c--------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS----------Q--------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s----------~--------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
. +....+..+.++++.+++.+.+..+|.++++ + ||||+++|++||||||||+||+.+...+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 7 4333455677788889998888887755431 1 8999999999999999999999999999
Q ss_pred HHHH-HHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1091 QQTL-RQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1091 ~~~l-~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+
T Consensus 199 ~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 254 (290)
T 2bbs_A 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSS 254 (290)
T ss_dssp HHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHH
Confidence 9874 455568999999999999888999999999999999999999863 334443
No 101
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.5e-32 Score=327.26 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-eEEEEecCCcC-C
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-TKAYVAQSPWI-Q 433 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-~~~~v~Q~~~~-~ 433 (1156)
..++++|+++.|.. ..|++.||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|+||++.. +
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 46899999999952 568888999999999999999999999999999999999999999887 58999999764 4
Q ss_pred CccHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 434 SGKIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 434 ~~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
..||+||+.+... ......+++++.+++.+. ..+...+|||||||||+|||||+.+|++||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6799999976321 122344555555555432 2355678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeC--CeEEEccChHHHH
Q 037346 510 FSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKD--GKITQAGKYSDIL 567 (1156)
Q Consensus 510 ~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 567 (1156)
|++||+.++..+.+.+.. ..|+|+|+||||++.+.. ||+|++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999988876643 358999999999999864 999999986 5666667766554
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=6.1e-32 Score=339.64 Aligned_cols=195 Identities=25% Similarity=0.368 Sum_probs=153.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcC--
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWI-- 432 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~-- 432 (1156)
.++++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +++|++|++..
T Consensus 671 mL~v~nLs~~Y~g-~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l 749 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHI 749 (986)
T ss_dssp EEEEEEEEECCTT-CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHG
T ss_pred eEEEEeeEEEeCC-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhh
Confidence 5999999999963 235799999999999999999999999999999999999999999999987 58999998631
Q ss_pred ---CCccHHHHh------------------------------------------------------------------hc
Q 037346 433 ---QSGKIEENI------------------------------------------------------------------LF 443 (1156)
Q Consensus 433 ---~~~ti~eni------------------------------------------------------------------~~ 443 (1156)
.+.|+++++ .+
T Consensus 750 ~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l 829 (986)
T 2iw3_A 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829 (986)
T ss_dssp GGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTS
T ss_pred hcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhc
Confidence 122444433 32
Q ss_pred CC------------------------------------------CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 444 GK------------------------------------------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 444 ~~------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+. +...++.+++++.++|...+. ....+.
T Consensus 830 ~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---------~~~~~~ 900 (986)
T 2iw3_A 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---------SHSRIR 900 (986)
T ss_dssp TTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH---------HHSCGG
T ss_pred ccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh---------cCCCcc
Confidence 21 011234445555555543220 123457
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEc
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKITQA 560 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~ 560 (1156)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+... +.|||+|||+++++. .||+|++|++|+++..
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 89999999999999999999999999999999999998887765433 679999999999986 5999999999999876
Q ss_pred cC
Q 037346 561 GK 562 (1156)
Q Consensus 561 g~ 562 (1156)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
No 103
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=4.9e-32 Score=296.81 Aligned_cols=177 Identities=22% Similarity=0.257 Sum_probs=155.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|. +|++++||||+|.+| ..|++|
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHH
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHH
Confidence 468888888888888889999999999999999999999999998 367899999999887 679999
Q ss_pred ccCCCCC--------CC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1027 NLDPLEE--------HA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1027 Nl~~~~~--------~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+.++.. .. ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9965320 12 356899999999998887777766654 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|+ ++.|+++++++
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999988753 789999999999884 699999999999 99999999875
No 104
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-32 Score=327.68 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=164.0
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCC-----eEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCc-CCC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHG-----MRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW-IQS 434 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~-~~~ 434 (1156)
++++|+|+. ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+..-.-.++|+||++. .+.
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 677888863 235799999999999 789999999999999999999999999998543446899999975 457
Q ss_pred ccHHHHhhcC---CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG---KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.|+++|+... ...+.+..+++++..++.+.. .....+|||||||||+|||||..+|++|||||||+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 7999998642 223455667788888775433 34557899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHhc
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILNS 569 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~~ 569 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++.+. .||+|++|++ |+++..|+++++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999988776543 35899999999999986 4999999986 899999999998864
No 105
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.97 E-value=2.7e-31 Score=282.72 Aligned_cols=175 Identities=18% Similarity=0.321 Sum_probs=147.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||||...+++.++|.||||||||||+++|+|+++|++|+|.++|.++. .+|+.++||||+|.+|.+ |++|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHH
Confidence 4577788887888888899999999999999999999999999999999986 368899999999999987 9999
Q ss_pred ccCCC----C-CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1027 NLDPL----E-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1027 Nl~~~----~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
|+.++ . ...++++.++++.+++.+. ...+..|..+ ||||+++|++||||||||+||+++...+.+.|
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 98642 1 2236789999999999887 6666666544 89999999999999999999999999999999
Q ss_pred HHhc-CCceEEEeecCcccccccCEEEEEeCcEEe
Q 037346 1095 RQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1095 ~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~Iv 1128 (1156)
++.. +++|||++||+++.+..++..+|+.+|+|-
T Consensus 177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 177 LEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp HHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 8865 478999999999999885555556667763
No 106
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=3.1e-34 Score=319.62 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=176.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCC
Q 037346 294 ESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPN 373 (1156)
Q Consensus 294 t~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~ 373 (1156)
+-+.+.+++.+.+. ..|+..+...+..+.++.++..||.++++.+...... . .+.....+.|+++|++|.|+ .
T Consensus 41 ~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~~~~~~~~~i~~~~vs~~y~----~ 113 (305)
T 2v9p_A 41 SDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-GSWKSILTFFNYQNIELITF----I 113 (305)
T ss_dssp TCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-CCTHHHHHHHHHTTCCHHHH----H
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-CcccccCCeEEEEEEEEEcC----h
Confidence 34566777766555 4899999999999999999999999999764211100 0 00000113488999999996 4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHH-HhhcCCCCCHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEE-NILFGKEMDRERY 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~e-ni~~~~~~~~~~~ 452 (1156)
++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|++| ||.++...++ ..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccccccccHHHHhhccCccccH-HH
Confidence 6999999999999999999999999999999999998 7888 46889999999999998 9999754432 22
Q ss_pred HHHHHHhCCchhhhh-CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 453 ERVLEACSLKKDLEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 453 ~~~~~~~~l~~~~~~-~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
. +.++. +|.|++ |.+|||||||| |||++++|+||| ||+||+.+++.+..
T Consensus 185 ~---------~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 185 W---------RYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp H---------HHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred H---------HHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 2 23343 566654 67999999999 999999999999 99999999877641
Q ss_pred EEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 532 tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+||+++.+..||+| +|++|++++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999999999999 9999999999999998
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=2.3e-28 Score=305.99 Aligned_cols=128 Identities=22% Similarity=0.379 Sum_probs=101.1
Q ss_pred ccHHHHhhcCCCCC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCC
Q 037346 435 GKIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPF 510 (1156)
Q Consensus 435 ~ti~eni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~ 510 (1156)
.|++||+.|..... .++..+.++..++.. ...++.+.+|||||||||+|||||+.+| ++|||||||
T Consensus 505 ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 505 MTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 47888888765432 123334444444432 1234567899999999999999999887 599999999
Q ss_pred CCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE------eCCeEEEccChHHHHhcCcc
Q 037346 511 SPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI------KDGKITQAGKYSDILNSGTD 572 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 572 (1156)
++||+.+...+.+.+.. .+|+|+|+||||++.+..||+|++| ++|+|++.|+++++.+....
T Consensus 575 ~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 99999999998876643 4589999999999988889999999 89999999999999765443
No 108
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.94 E-value=7.3e-30 Score=310.50 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=106.0
Q ss_pred CCCccccceE-EeeCCeEEEEEcCCCCChHHHHHH--HhCCCCCCCcEEEEcCe------------EEEEecCCcCCCcc
Q 037346 372 PNPTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSC--ILGGVPKESGIIRLCGT------------KAYVAQSPWIQSGK 436 (1156)
Q Consensus 372 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~--i~g~~~~~~G~i~~~g~------------~~~v~Q~~~~~~~t 436 (1156)
+.++|+++++ .+++|++++|+||||||||||+++ +.|.++|.+|.|+++|. ++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT---
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc---
Confidence 4679999999 999999999999999999999999 67999999999999873 35555554311
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc-cCCCeeeeeCCCCC---
Q 037346 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY-QDADIFLLDDPFSP--- 512 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~-~~~~illlDep~s~--- 512 (1156)
+|+.+....+.++..+++ ..+.-++ +.-.++++|. .+|++++|||||+.
T Consensus 101 --~~l~~~~~~~~~~~~~~l------------------------~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPDPEGQEVV------------------------GGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCCSSCCSCC------------------------SSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcccchhhhh------------------------cccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 111110000000000000 1111111 2333444442 46889999999985
Q ss_pred --cCHHHHHHHHHHHHh--cCCCEEEEEccCCCcc---------cc-CCEEEEEeCCe
Q 037346 513 --VDDHTGAHLFKFCWV--SSSKTVIYATHQVEFL---------PA-ADLILVIKDGK 556 (1156)
Q Consensus 513 --lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~---------~~-~d~i~~l~~G~ 556 (1156)
+|+..++.+++.+.. ..|.|+|++||+++.+ .. ||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 588888888775532 4589999999999875 34 99999999865
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=5.7e-27 Score=294.98 Aligned_cols=129 Identities=25% Similarity=0.402 Sum_probs=102.0
Q ss_pred cHHHHhhcCCCCC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCCC
Q 037346 436 KIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFS 511 (1156)
Q Consensus 436 ti~eni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~s 511 (1156)
|+.|++.|..... ..+..++++.++|.. ..+|+.+.+|||||||||+|||||+++| ++|||||||+
T Consensus 768 tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTs 837 (916)
T 3pih_A 768 TVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837 (916)
T ss_dssp BHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTT
T ss_pred CHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCC
Confidence 5555555443221 233445555555532 2357788999999999999999999875 7999999999
Q ss_pred CcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE------eCCeEEEccChHHHHhcCcchH
Q 037346 512 PVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI------KDGKITQAGKYSDILNSGTDFM 574 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 574 (1156)
+||+...+.+.+.+.. .+|+|||+|||+++.+..||+|++| ++|+|++.|+++++.+....|.
T Consensus 838 GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 9999999998876643 4689999999999999889999999 8999999999999987655443
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=2.1e-26 Score=287.59 Aligned_cols=95 Identities=25% Similarity=0.483 Sum_probs=85.1
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccC---CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQD---ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~---~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
+++...+|||||||||+|||+|.++ |++|||||||++||+...+.+.+.+.. .+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 3567789999999999999999996 799999999999999999998876643 46899999999999997799999
Q ss_pred EE------eCCeEEEccChHHHHhcC
Q 037346 551 VI------KDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 551 ~l------~~G~i~~~g~~~~l~~~~ 570 (1156)
+| ++|+|+..|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987643
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.4e-29 Score=299.46 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=143.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-E-EEEcC----eEEEEecCCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-I-IRLCG----TKAYVAQSPW 431 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~-i~~~g----~~~~v~Q~~~ 431 (1156)
++++|++|+| .++||++++|++++|+||||||||||+++|+|+++|++| + |.++| .++|+||++.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 4555555555 379999999999999999999999999999999999999 9 99987 4789999984
Q ss_pred CC----CccHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh--hccC
Q 037346 432 IQ----SGKIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP--LYQD 500 (1156)
Q Consensus 432 ~~----~~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra--l~~~ 500 (1156)
++ ..|++||+ |+... +.++..++++.+ |...... ..+||||||||++|||| |+.+
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~ 255 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHLD 255 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhccC
Confidence 32 35899999 76432 111111122222 2222222 56899999999999999 9999
Q ss_pred CCe----eeeeC-CCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCC------ccc-cCCE-----EEEEe-CCeEEEccC
Q 037346 501 ADI----FLLDD-PFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVE------FLP-AADL-----ILVIK-DGKITQAGK 562 (1156)
Q Consensus 501 ~~i----lllDe-p~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~ 562 (1156)
|++ +|||| ||++||+. .+.+. .++...++|+|+|||+.+ .+. .||+ |++|+ +|+++ .|+
T Consensus 256 p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~ 332 (460)
T 2npi_A 256 PQVRRSGCIVDTPSISQLDEN-LAELH-HIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVD 332 (460)
T ss_dssp HHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCC
T ss_pred cccCcceEEEeCCcccccChh-HHHHH-HHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECC
Confidence 999 99999 99999999 44443 344445789999999988 443 5999 99999 99999 899
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
++++.+
T Consensus 333 ~~~~~~ 338 (460)
T 2npi_A 333 DVYKRS 338 (460)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=3.9e-26 Score=284.33 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=86.2
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
.+....+|||||||||+|||||+.+| ++|||||||++||+...+.+.+.+.. .+|+|||+|||+++.+..||+|+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999875 99999999999999999998876643 46899999999999888899999
Q ss_pred EE------eCCeEEEccChHHHHhcCcch
Q 037346 551 VI------KDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 551 ~l------~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
+| ++|+|+..|+++++.+....+
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence 99 689999999999998654433
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=1.4e-25 Score=280.47 Aligned_cols=98 Identities=22% Similarity=0.437 Sum_probs=86.4
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
.++...+|||||||||+|||||+.+| ++|||||||++||+...+.+.+.+.. ..|+|||+|||+++.+..||+|+
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 936 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWII 936 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 46677899999999999999999875 99999999999999999998876643 46899999999999988899999
Q ss_pred EE------eCCeEEEccChHHHHhcCcch
Q 037346 551 VI------KDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 551 ~l------~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
+| ++|+++..|+++++.+....+
T Consensus 937 vL~p~gg~~~G~Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 937 DLGPEGGAGGGTVVAQGTPEDVAAVPASY 965 (993)
T ss_dssp EEESSSTTSCSEEEEEECHHHHHHCTTCH
T ss_pred EECCCcCCCCCEEEEecCHHHHHhCCHHH
Confidence 99 689999999999998654433
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=2.5e-25 Score=263.75 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhhccCC--CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE----eCC
Q 037346 483 LSGGQKQRIQIARPLYQDA--DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI----KDG 555 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~--~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l----~~G 555 (1156)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.+.. .+|.|||+|||+++++..||++++| ++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 7999999999999999999 99999999999999999999887754 3589999999999888889999999 999
Q ss_pred eEEEc
Q 037346 556 KITQA 560 (1156)
Q Consensus 556 ~i~~~ 560 (1156)
+++..
T Consensus 376 ~~~~~ 380 (415)
T 4aby_A 376 RTVSH 380 (415)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98754
No 115
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.90 E-value=2.2e-27 Score=264.41 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=143.1
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCC-CCeEEEEEEEEEE------------cCCCCceeeCCCCCCH
Q 037346 907 KNLERKIISVERILQCACIPSEPALVIEATKPNNSRPS-HGEVNIRHLQVRY------------APNLPLVLRGRTGSGK 973 (1156)
Q Consensus 907 ~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~I~~~~Vsf~Y------------~~~~~~vL~G~SGsGK 973 (1156)
..+.....+.+|+.++++.+++... ....|+. .+.|+++||+|+| ++++.++|.|||||||
T Consensus 66 ~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGK 139 (305)
T 2v9p_A 66 RHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGK 139 (305)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcH
Confidence 3456677788899888765433210 1112332 2357888888887 4666778999999999
Q ss_pred HHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh-ccCCCCCCCHHHHHHHHHHcCCChHH
Q 037346 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS-NLDPLEEHADEQIWEALDKCQLGDEV 1052 (1156)
Q Consensus 974 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~-Nl~~~~~~~deei~~al~~~~l~~~i 1052 (1156)
|||+++|+|++ +|+| +++++|+|.+|.+|+++ ||.+..+.++ .+++.++.. +.+..
T Consensus 140 STLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~~~~i~~~-L~~gl 196 (305)
T 2v9p_A 140 SMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH-ACWRYFDTY-LRNAL 196 (305)
T ss_dssp HHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-HHHHHHHHT-TTGGG
T ss_pred HHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH-HHHHHHHHH-hHccC
Confidence 99999999999 8998 35789999999999998 9987644443 555555543 22111
Q ss_pred --HhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1053 --RKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1053 --~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
..+.+|--..|||++++|+||| ||+||+++++.|+. ++||++++..||+| ||++|+|++.
T Consensus 197 dg~~LSgGqkQRARAll~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 197 DGYPVSIDRKHKAAVQIKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp GTCCEECCCSSCCCCEECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCC
T ss_pred CccCcCHHHHHHHHHHhCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEe
Confidence 1122222222999999999999 99999999998862 39999999999999 9999999999
Q ss_pred cChhHHhcCCCChHHHHHHHHh
Q 037346 1131 DSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1131 G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+|++| ++.|++++..+.
T Consensus 259 g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 259 ITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp CCHHHH----HHHHHHSTTTTT
T ss_pred CCHHHH----HHHHHHHHHHcc
Confidence 999999 578999887543
No 116
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1.2e-22 Score=231.75 Aligned_cols=180 Identities=24% Similarity=0.283 Sum_probs=121.9
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC----------------------------------------------
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV---------------------------------------------- 410 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~---------------------------------------------- 410 (1156)
+++++++.+| +++|+||||||||||+.+|...+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCCcEEEEcCeE-------------EEEecCCcCC-CccHHHHhhcCCCC-----C--------HHHHHHHHHHh
Q 037346 411 ----PKESGIIRLCGTK-------------AYVAQSPWIQ-SGKIEENILFGKEM-----D--------RERYERVLEAC 459 (1156)
Q Consensus 411 ----~~~~G~i~~~g~~-------------~~v~Q~~~~~-~~ti~eni~~~~~~-----~--------~~~~~~~~~~~ 459 (1156)
.+.+|.+.+||.. ++.||+..+. .+++.+|+...... + ...|+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2334677888742 4455554433 67888887654220 0 01233333321
Q ss_pred C---------------Cch-hhhhCCCCCcccc------ccCCCCCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCc
Q 037346 460 S---------------LKK-DLEVLPFGDQTII------GERGINLSGGQKQRIQIARPLY----QDADIFLLDDPFSPV 513 (1156)
Q Consensus 460 ~---------------l~~-~~~~~~~g~~t~v------~~~g~~LSgGqkqRi~lAral~----~~~~illlDep~s~l 513 (1156)
. +.. ....++.|.++.+ ...+.+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0 000 0112333443332 2345689999999999999996 689999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEE--EEEeCCeE
Q 037346 514 DDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLI--LVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i--~~l~~G~i 557 (1156)
|+...+.+++.+.. .+++|+|++||+.+.+..||++ ++|++|..
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 99999998876644 3578999999998877889987 88888865
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=1.2e-24 Score=230.82 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=90.3
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE----------cCeEEEEecCCcCCCccHHHHh-
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL----------CGTKAYVAQSPWIQSGKIEENI- 441 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~----------~g~~~~v~Q~~~~~~~ti~eni- 441 (1156)
+.+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|.. ...++|+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 999998843 12468888887 6666
Q ss_pred hcCCC--------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCc
Q 037346 442 LFGKE--------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513 (1156)
Q Consensus 442 ~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~l 513 (1156)
.++.+ .+.+++++++ .. .| |||||++|||||+.+|+++||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l--------------------~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~- 134 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLM--------------------EA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT- 134 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHH--------------------HT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHH--------------------Hh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc-
Confidence 34310 0111111111 11 12 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 514 DDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 514 D~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
++..+.+.+.. .+|+|+| +||+++.+.. +...++|
T Consensus 135 ---~~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 135 ---TPAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp ---CHHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred ---cHHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 55666665533 3578999 9999876543 3334555
No 118
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=4.1e-23 Score=238.75 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=74.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhhc------cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCE
Q 037346 477 GERGINLSGGQKQRIQIARPLY------QDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADL 548 (1156)
Q Consensus 477 ~~~g~~LSgGqkqRi~lAral~------~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~ 548 (1156)
+....+||||||||++|||||. .+|++|||||||++||+.....+++.+.. ..|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4566789999999999999999 79999999999999999999999876644 468999999999998778999
Q ss_pred EEEEeCCeEEE
Q 037346 549 ILVIKDGKITQ 559 (1156)
Q Consensus 549 i~~l~~G~i~~ 559 (1156)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=2.9e-23 Score=214.18 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=99.4
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcC--CCccHHHHhhcCCCCCHHHHH
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWI--QSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~--~~~ti~eni~~~~~~~~~~~~ 453 (1156)
|+||++++||+++|+||||||||||++++.+... .+++ ..++++|++.- +.+++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~---------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISSDFCRGLMSDDENDQTVTGAAFDVLHY---------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEHHHHHHHHCSSTTCGGGHHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEccHHHHHHhcCcccchhhHHHHHHHHHH----------
Confidence 6899999999999999999999999998664222 1221 12566666531 12233332211
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH---------------
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG--------------- 518 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~--------------- 518 (1156)
..+ ..+..|..+.+.. ....|||||||++||||+..+|++++|||||++||+.++
T Consensus 65 -~~~--------~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 65 -IVS--------KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp -HHH--------HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred -HHH--------HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 000 0011233333332 235699999999999999999999999999999999944
Q ss_pred -HHHHHHHH--hcCCCEEEEEccCCCccccCCEE
Q 037346 519 -AHLFKFCW--VSSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 519 -~~i~~~~~--~~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
+.+.+.+. ..+|.|+|++||+++.+..++++
T Consensus 135 ~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 135 TQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 55655432 23489999999999887766554
No 120
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=8.7e-22 Score=233.26 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=138.3
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc--------------------------------------CCCceE
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE--------------------------------------STAGHI 991 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~--------------------------------------p~~G~I 991 (1156)
++++++...++ ..+|.|+||||||||+++|.++.. +.+|+|
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 67889998888 789999999999999999966653 457899
Q ss_pred EEcCeeCCCCChHHHhhc-CeeeccccccccccchhccCCCCCCC-----------------------------------
Q 037346 992 LIDGKDISLIGLHDLRTR-LSIIPQDPTMFEGTTRSNLDPLEEHA----------------------------------- 1035 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~-i~~VpQdp~LF~gTIr~Nl~~~~~~~----------------------------------- 1035 (1156)
++||.+++..++.++++. +++++|++.++-.+..++..+.+...
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 999999988778888877 79999999887665443322211111
Q ss_pred --------------------------------HHHHHHHHHHcCCChH--HHh------------------h-cCC----
Q 037346 1036 --------------------------------DEQIWEALDKCQLGDE--VRK------------------K-KGK---- 1058 (1156)
Q Consensus 1036 --------------------------------deei~~al~~~~l~~~--i~~------------------l-p~g---- 1058 (1156)
.+++.+.++..++.+. ... + +++
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 1223344444444320 000 0 000
Q ss_pred -----cccc--------ccccccCC--CEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE-
Q 037346 1059 -----LDSQ--------GRVLLKKS--KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL- 1122 (1156)
Q Consensus 1059 -----l~s~--------ARALLr~~--~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl- 1122 (1156)
+.|+ ||+|+.+| +||||||||++||+++...|.+.|+++.+++|||+|||+++.+..||+|+||
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~ 369 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVE 369 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEE
Confidence 1233 79999999 9999999999999999999999999988899999999999999999999999
Q ss_pred ---eCcEEeeec
Q 037346 1123 ---NHGLIKEYD 1131 (1156)
Q Consensus 1123 ---~~G~IvE~G 1131 (1156)
++|+++...
T Consensus 370 k~~~~G~~~~~~ 381 (415)
T 4aby_A 370 KQVEDGRTVSHV 381 (415)
T ss_dssp EEEETTEEEEEE
T ss_pred EeccCCceEEEE
Confidence 999988653
No 121
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-23 Score=246.70 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=133.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-e-EEEcCeeCCCCChHHHhhcCeeecccccccc----ccchhccCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-H-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFE----GTTRSNLDPL 1031 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~----gTIr~Nl~~~ 1031 (1156)
.+++.++|.||||||||||+++|+|++.|++| + |++|| +.|+.+++|||++.+|. .|+++|+ ++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCeeeeccchhhcccccccchhhhh-cc
Confidence 46777899999999999999999999999999 9 99998 14788999999997654 4899998 43
Q ss_pred CC-----CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccc--cccCCCE----EEEec-CCcCCCHHHHHHHHH
Q 037346 1032 EE-----HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRV--LLKKSKV----LVLDE-ATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1032 ~~-----~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARA--LLr~~~I----LiLDE-aTS~LD~~te~~I~~ 1092 (1156)
.. ..++.+.++++.+|+.+... +..|..+ ||| |+++|+| ||||| ||++||+. .+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~ 282 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHH 282 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHH
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHH
Confidence 21 12344667788888877643 3333322 899 9999999 99999 99999999 777888
Q ss_pred HHHHhcCCceEEEeecCcc------cc-cccCE-----EEEEe-CcEEeeecChhHHhc
Q 037346 1093 TLRQHFSDCTVVTIAHRIT------SV-LDSAM-----VLLLN-HGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1093 ~l~~~~~~~TvI~IaHrl~------ti-~~~D~-----I~Vl~-~G~IvE~G~~~eLl~ 1138 (1156)
.+++. +.|+|+|+|+.+ .+ .-||+ |++|+ +|+|+ .|+++++.+
T Consensus 283 l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 283 IIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp HHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred HHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 88765 789999999987 33 45899 99999 99999 899998853
No 122
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=5.1e-22 Score=205.59 Aligned_cols=139 Identities=12% Similarity=0.212 Sum_probs=99.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCC-CcEEE--E-----cCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKE-SGIIR--L-----CGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~--~-----~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
.++|+||||||||||+++|+|++... .|... . ..+++|++|++ +..+|+. +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh--------------
Confidence 68999999999999999999998532 23211 1 12468888876 3333431 10
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh-----hccCCCeeeeeC--CCCCcCHHHHHHHHHHHHhcCCCE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP-----LYQDADIFLLDD--PFSPVDDHTGAHLFKFCWVSSSKT 532 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra-----l~~~~~illlDe--p~s~lD~~~~~~i~~~~~~~~~~t 532 (1156)
+ ....+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+ ...+.|
T Consensus 62 -~-------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l-~~~~~~ 132 (178)
T 1ye8_A 62 -K-------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM-HDPNVN 132 (178)
T ss_dssp -T-------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-TCTTSE
T ss_pred -h-------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH-hcCCCe
Confidence 0 0001134677788999999999999996 999999999999 99999999988887654 345677
Q ss_pred EEEEcc---CCCcccc-CCEEEEEeCCeEEE
Q 037346 533 VIYATH---QVEFLPA-ADLILVIKDGKITQ 559 (1156)
Q Consensus 533 vi~vtH---~~~~~~~-~d~i~~l~~G~i~~ 559 (1156)
+|++|| +.+++.. ||+ .+|++++
T Consensus 133 ~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 133 VVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp EEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred EEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999996 5556653 666 5566654
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=4.3e-23 Score=239.48 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=125.9
Q ss_pred CCccccceEEeeCCe--------------------EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----EEEEec
Q 037346 373 NPTLRNINLKVFHGM--------------------RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----KAYVAQ 428 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----~~~v~Q 428 (1156)
+.+|+++|+++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|. .+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 99999999999999999999999999999998874 279999
Q ss_pred CCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH--HHHHHHHHHhhcc-------
Q 037346 429 SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG--QKQRIQIARPLYQ------- 499 (1156)
Q Consensus 429 ~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG--qkqRi~lAral~~------- 499 (1156)
++...+.|+.||+.++.+ ..+.++.++.+++.+. +.. . .|||| ||||++||||+.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~----~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFF----I-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEE----E-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCe----E-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 986667799999987743 2346677777776431 111 1 29999 9999999999999
Q ss_pred ---CCCeeeeeCCCCCcCHHHHHHHHHHHHh-------cC----CCEEEEEccCCCc
Q 037346 500 ---DADIFLLDDPFSPVDDHTGAHLFKFCWV-------SS----SKTVIYATHQVEF 542 (1156)
Q Consensus 500 ---~~~illlDep~s~lD~~~~~~i~~~~~~-------~~----~~tvi~vtH~~~~ 542 (1156)
+||+++|||||++||+..++++.+.+.. .. .++++++||.++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 9999999999999999988877654422 11 2567888998764
No 124
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=1.4e-23 Score=238.87 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=102.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~ 453 (1156)
++++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|..-+.. +. .++++.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~-----~~~~i~~---------- 221 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KH-----HKNYTQL---------- 221 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SS-----CSSEEEE----------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--cc-----chhEEEE----------
Confidence 489999999999999999999999999999999999999999999987531100 00 0011100
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEE
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTV 533 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tv 533 (1156)
.+ | |||+||++|||||..+|++++||||++. +..+ .++.+ ...+.|+
T Consensus 222 --------------~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~-~~g~~tv 268 (330)
T 2pt7_A 222 --------------FF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVL-CSGHKGT 268 (330)
T ss_dssp --------------EC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHH-HTTCCCE
T ss_pred --------------Ee-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHH-hcCCCEE
Confidence 00 1 8999999999999999999999999982 3322 22322 2233589
Q ss_pred EEEccCCCccccCCEEEEEeCCeE
Q 037346 534 IYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 534 i~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
|+++|+.+....||++++|++|..
T Consensus 269 i~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 269 LTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEEcccHHHHHhhhheehhcCCc
Confidence 999999997677999999988753
No 125
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=1.1e-22 Score=218.48 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=105.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc-------------CeEEEEecCCcCCCc-----
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC-------------GTKAYVAQSPWIQSG----- 435 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~-------------g~~~~v~Q~~~~~~~----- 435 (1156)
..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.++ ..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999999 5 988872 135789998765432
Q ss_pred ------cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH-----HHhhccCCCee
Q 037346 436 ------KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI-----ARPLYQDADIF 504 (1156)
Q Consensus 436 ------ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l-----Aral~~~~~il 504 (1156)
++.+| .+|. ..+..+++++...+ ..++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 23333 2232 23445566554322 1111 4799999999999 89999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
+|||||+++|..+++.+.+.+.. .+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988887766543 23445 677 567999988764
No 126
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=4e-22 Score=224.70 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEE-----------------------
Q 037346 326 KVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLK----------------------- 382 (1156)
Q Consensus 326 ~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~----------------------- 382 (1156)
+.++.|+.+.+..+..... ....+ ..+..|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~-~~~l~--~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEE-LVGLR--GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHH-HHTTC--CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHHH-HHhcc--CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 4566777666554322111 11111 2344699999999994 577777765
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCC------CCCHHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK------EMDRERYERVL 456 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~------~~~~~~~~~~~ 456 (1156)
+++|++++|+||||||||||+++|.|+++|..|. .+++|++|++.++..|++||+.+.. ..+.++..+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8999999999999999999999999999998775 4689999999988779999997532 13455666666
Q ss_pred HHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 457 ~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
+..+ . |.. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 163 ~~l~-~--------~~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 163 TSVK-S--------GSD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHH-T--------TCS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHhC-C--------Ccc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 6554 1 111 112357999999999999999999999999999999986
No 127
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.79 E-value=1.5e-20 Score=199.31 Aligned_cols=144 Identities=18% Similarity=0.101 Sum_probs=92.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc-CCCC----
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL-DPLE---- 1032 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl-~~~~---- 1032 (1156)
.+++.++|.||||||||||+++|+|+ +|++|+|. +.++. .+...+|+++++|||++ ++|+ .+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~enl~~~~~~~~~ 88 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NEKIDPYLRPLHD 88 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC-------------CTTTHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HHHHHHHHHHHHH
Confidence 45667789999999999999999999 99999994 33333 23335688999999998 5665 2210
Q ss_pred ----CCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1033 ----EHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1033 ----~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
....+++.++++. ++. ...--..||||+.+|+|||||||||+ +...+.+.|+++.+++|+| |||
T Consensus 89 ~~~~~~~~~~~~~~l~~-glG------q~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtH 156 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-GIV------EVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTG 156 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-TSE------EEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEE
T ss_pred HHHHhccHHHHHHHHHh-CCc------hHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EEC
Confidence 0122345555555 440 00111339999999999999999999 8888999998874578999 999
Q ss_pred CcccccccCEEEEEeCcEE
Q 037346 1109 RITSVLDSAMVLLLNHGLI 1127 (1156)
Q Consensus 1109 rl~ti~~~D~I~Vl~~G~I 1127 (1156)
+++.+. ++...++|..
T Consensus 157 d~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 157 DITQVD---LPGGQKSGLR 172 (208)
T ss_dssp C---------------CCH
T ss_pred CHHHHh---CcCCCCCcHH
Confidence 988654 4555667754
No 128
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.77 E-value=6.6e-21 Score=224.16 Aligned_cols=180 Identities=16% Similarity=0.088 Sum_probs=142.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|.. +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35799999 999999999999999999999999999999999999999874
Q ss_pred --------EEEEecC--CcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --------KAYVAQS--PWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --------~~~v~Q~--~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|+ |.....|+.+|+.+.. +|.. ..+ .+... +=+....||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~~--~~v~~--------~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DRG--QHVLL--------IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TTT--CEEEE--------EEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hCC--CCHHH--------HHHhHHHHHHHH-HHHH
Confidence 5899995 3344569999987642 1211 001 11100 012356799999 9999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c---C-CC-----EEEEEccCCCccccCCEEEEEeCCeEEEcc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S---S-SK-----TVIYATHQVEFLPAADLILVIKDGKITQAG 561 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~---~-~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 561 (1156)
|| +.+|++ |++||+.+...+.+.+.. . + |+ |++++|||++ .+.||++++|.+|+|+.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 788887 999999999988776543 2 2 54 9999999999 6679999999999999998
Q ss_pred ChHHHH
Q 037346 562 KYSDIL 567 (1156)
Q Consensus 562 ~~~~l~ 567 (1156)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 876653
No 129
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=7.3e-19 Score=201.01 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHhhc---------cCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEE
Q 037346 482 NLSGGQKQRIQIARPLY---------QDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~---------~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
.||||||||++|||+|+ .+|+|+|||||||+||+..+..+++.+.... .|+|++|| .+. .||++++|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th-~~~--~~~~i~~l 340 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTE-LAP--GAALTLRA 340 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESS-CCT--TCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEe-ccc--cCCEEEEE
Confidence 69999999999999999 8999999999999999999999988765444 89999999 444 89999999
Q ss_pred eCCeEEEccChHHH
Q 037346 553 KDGKITQAGKYSDI 566 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l 566 (1156)
++|+++..|+++++
T Consensus 341 ~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 341 QAGRFTPVADEEMQ 354 (359)
T ss_dssp ETTEEEECCCTTTS
T ss_pred ECCEEEecCCHHHH
Confidence 99999999988765
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=2.2e-20 Score=209.46 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=115.7
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCc-CC-Cc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPW-IQ-SG 435 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~-~~-~~ 435 (1156)
+++||++++|++++|+|||||||||+++.|+|.++|++|+|.++| .++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 467889999999999999999999999999999999999999876 2689999987 55 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV 513 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l 513 (1156)
|++||+.++.... .. ...++. .|..........+|| |||++||||+..+|+ +++|| ||+++
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999997642100 00 001111 111111122234688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEccCCC---------ccc-cCCEEEEEeCCeE
Q 037346 514 DDHTGAHLFKFCWVSSSKTVIYATHQVE---------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~~~~~tvi~vtH~~~---------~~~-~~d~i~~l~~G~i 557 (1156)
|+..... ......|.|+|++||.-+ .+. ..+.|.++.+|+.
T Consensus 234 D~~~~~~---~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQAR---EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHHH---HHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHH---HHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9986532 222245889999999322 222 2578888888864
No 131
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.74 E-value=2.6e-18 Score=195.69 Aligned_cols=183 Identities=16% Similarity=0.254 Sum_probs=123.6
Q ss_pred EEEEEcCCCCceeeCCCCCCHHHHHHHHhhc-------------------------------------------------
Q 037346 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI------------------------------------------------- 983 (1156)
Q Consensus 953 Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl------------------------------------------------- 983 (1156)
+++...++ -.+|.|+||||||||+.+|..+
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~ 96 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARE 96 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEE
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEE
Confidence 34444555 4588899999999999999843
Q ss_pred -ccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhccCCCCC--------C--------CHHHHHHHHHH
Q 037346 984 -VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSNLDPLEE--------H--------ADEQIWEALDK 1045 (1156)
Q Consensus 984 -~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~Nl~~~~~--------~--------~deei~~al~~ 1045 (1156)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|++.+|+..... . +-+++.+.+..
T Consensus 97 ~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~ 176 (322)
T 1e69_A 97 LKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNR 176 (322)
T ss_dssp EETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHHH
T ss_pred EEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2344679999999987666777777899999998765 8888888753211 0 00112222111
Q ss_pred c------------CCChH-HHhhcCCc----------c------cc--------ccccc----cCCCEEEEecCCcCCCH
Q 037346 1046 C------------QLGDE-VRKKKGKL----------D------SQ--------GRVLL----KKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1046 ~------------~l~~~-i~~lp~gl----------~------s~--------ARALL----r~~~ILiLDEaTS~LD~ 1084 (1156)
. .+... ...++.|+ + |+ ||||. ++|+|||||||||+||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 177 FISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp HHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred HHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 0 00000 00111111 1 11 78885 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeecCcccccccCEE--EEEeCcEE-eeecChhHH
Q 037346 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMV--LLLNHGLI-KEYDSPTKL 1136 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I--~Vl~~G~I-vE~G~~~eL 1136 (1156)
.+.+.+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 257 ~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 257 YNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999987788999999999888889987 88888854 344444443
No 132
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.74 E-value=1.2e-20 Score=199.51 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=121.5
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
++..++|.||||||||||+++|.|+++ |..|. +||+++..++.+.+|+.+ +|++++|.+|++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~ 77 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFS 77 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeec
Confidence 466789999999999999999999986 78898 699999999999999876 899999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc------cccc-ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1026 SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD------SQGR-VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1026 ~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~------s~AR-ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+|+ ++ .++++++++++.....-+ .-.|.|+. -.+| +++++|++++|||+|+++|.+|++.|++.|.+..
T Consensus 78 ~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 78 GNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp TEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred Ccc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 998 43 267889999986432111 01122221 1366 8999999999999999999999999999998765
Q ss_pred CCceEEEeecCcccccccCEEEEEeC
Q 037346 1099 SDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
++ +.++| ++ ..||+|+|+++
T Consensus 154 ~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 154 TD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HH---TTGGG--ST-TTCSEEEECSS
T ss_pred HH---HHHhh--cc-CCceEEEECCC
Confidence 44 47788 55 88999999985
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.74 E-value=4.5e-20 Score=203.94 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=89.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEEecCCcCCC-ccHHHHhhcCCCCC----HHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKAYVAQSPWIQS-GKIEENILFGKEMD----RERY 452 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~~v~Q~~~~~~-~ti~eni~~~~~~~----~~~~ 452 (1156)
.++|+||||||||||+++|+|...|++|+|.++| .++|++|++.++. .||.||+.||.... .+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5899999999999999999999999999999876 3799999998765 49999999986532 1223
Q ss_pred HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCE
Q 037346 453 ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT 532 (1156)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~t 532 (1156)
.+.++ ......+ ..+||||||||+++|||+.. +|+||||+++||+...+ +++.+. .. .+
T Consensus 84 ~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~-~~-~~ 142 (270)
T 3sop_A 84 EKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLS-KV-VN 142 (270)
T ss_dssp HHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHH-TT-SE
T ss_pred HHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHH-hc-Cc
Confidence 33332 1111111 23799999999999999886 99999999999998743 444442 33 89
Q ss_pred EEEEccCCCcc
Q 037346 533 VIYATHQVEFL 543 (1156)
Q Consensus 533 vi~vtH~~~~~ 543 (1156)
+|+|.|..+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99998876554
No 134
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=7.8e-20 Score=196.20 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=115.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccccccc-----
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDPTMFE----- 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp~LF~----- 1021 (1156)
-.++||+|..++++.++|.||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 6 99999 888765432 345788999999987664
Q ss_pred ------ccchhccCCCCCCCHHHHHHHHHHcCCCh------HHHhhcCCc--cccccccccCCCEEEEecCCcCCCHHHH
Q 037346 1022 ------GTTRSNLDPLEEHADEQIWEALDKCQLGD------EVRKKKGKL--DSQGRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1022 ------gTIr~Nl~~~~~~~deei~~al~~~~l~~------~i~~lp~gl--~s~ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+++++|. ++ ..++++.++++.....- -.+..-..+ ...+|+++++|++++|||||+++|.+++
T Consensus 87 ~~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 87 EDFLEYDNYANNF-YG--TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp TCEEEEEEETTEE-EE--EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred cchhhhhhccccc-CC--CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 3444442 11 23566777777654310 011111122 2238999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeC
Q 037346 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1088 ~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
+.|++.+.+..+++| ++| +..||.|+|+++
T Consensus 164 ~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 164 EQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999988777777 788 688999999876
No 135
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=2.7e-17 Score=188.57 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=67.8
Q ss_pred cCCCCCCHHHHH------HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEE
Q 037346 478 ERGINLSGGQKQ------RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 478 ~~g~~LSgGqkq------Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
.....||||||| |+++|||+..+|++|||||||++||+.....+++.+.. ..++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345789999999 67888999999999999999999999999998876643 4578999999998777789999
Q ss_pred EEEe--CCe
Q 037346 550 LVIK--DGK 556 (1156)
Q Consensus 550 ~~l~--~G~ 556 (1156)
++|+ +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9995 554
No 136
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.71 E-value=1.8e-19 Score=205.61 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=116.5
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCc-CC-Cc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPW-IQ-SG 435 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~-~~-~~ 435 (1156)
..+||++++|++++|+|||||||||+++.|+|.++|++|+|.++| .++|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 357888999999999999999999999999999999999999876 2689999986 54 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV 513 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l 513 (1156)
|++||+.++.....+ ..+++.+++ .........+|| |||++||||+..+|+ +|+|| ||+++
T Consensus 228 tv~e~l~~~~~~~~d--~~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD--VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTTCS--EEEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCCCH--HHHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 999999764210000 001111111 111122234688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEccCCC---------ccc-cCCEEEEEeCCeE
Q 037346 514 DDHTGAHLFKFCWVSSSKTVIYATHQVE---------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~~~~~tvi~vtH~~~---------~~~-~~d~i~~l~~G~i 557 (1156)
|+.....-+ ....|.|+|++||.-+ .+. ..+.|.++..|+.
T Consensus 291 D~~~~~~~~---~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQAREF---NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHHHHH---HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHHHH---HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 998764322 2245889999999322 222 2567888887753
No 137
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.70 E-value=4.3e-20 Score=196.77 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---------cCeEEEEecCCcCCC-ccHHHHhh
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---------CGTKAYVAQSPWIQS-GKIEENIL 442 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---------~g~~~~v~Q~~~~~~-~ti~eni~ 442 (1156)
.++++| .++++|++++|+||||||||||+++|+|+++...+.+.+ ...++|++|++..|. .|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 467888 799999999999999999999999999998622221111 123689999987654 36666653
Q ss_pred c-----C--C--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH---hhccCCCeeeeeCCC
Q 037346 443 F-----G--K--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR---PLYQDADIFLLDDPF 510 (1156)
Q Consensus 443 ~-----~--~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr---al~~~~~illlDep~ 510 (1156)
. + . ....+..++.++...- .+. ...+.|.+.++-..++ |++.+|++++|||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~--~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVP--VLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL 151 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCC--EEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCe--EEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence 2 1 0 0122222332222100 000 0123333333333333 899999999999999
Q ss_pred CCc----CHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEe
Q 037346 511 SPV----DDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIK 553 (1156)
Q Consensus 511 s~l----D~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~ 553 (1156)
+++ |+..++++.+.+.. ..|.|+|+|||+++.+. .||+|++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 67777777665432 34789999999999875 599999984
No 138
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.69 E-value=6.7e-18 Score=216.77 Aligned_cols=169 Identities=11% Similarity=0.045 Sum_probs=118.8
Q ss_pred ccEEEee-----eEEEeCCCCCCCccccceEEeeC-------CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeE
Q 037346 356 TAIEIID-----GSFSWDFSSPNPTLRNINLKVFH-------GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK 423 (1156)
Q Consensus 356 ~~i~~~~-----~~f~~~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~ 423 (1156)
..|+++| +++.|+ ++.++++|++|++++ |++++|+||||||||||+++| |++.+. .++
T Consensus 749 ~~l~i~~~rHP~l~~~~~--~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqi 818 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQM 818 (1022)
T ss_dssp CCEEEEEECCCC--------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTT
T ss_pred ceEEEEeccccEEEEEec--CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hhe
Confidence 4699999 999884 246899999999987 999999999999999999999 988752 245
Q ss_pred E-EEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 A-YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~-~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
| ||||++. ..|+.|+|... .++.+++. .+..++|+|+++ +++|++++.+|+
T Consensus 819 G~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 819 GCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred eEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHHhCCCCc
Confidence 5 9999874 45777777421 11211111 123578888775 999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHH----hcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE--EccCh
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCW----VSSSKTVIYATHQVEFLP-AADLILVIKDGKIT--QAGKY 563 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~----~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~--~~g~~ 563 (1156)
++|||||++|+|+.....+...++ ...|.|+|++||+.+.+. .+|++.++ +|++. +.|..
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999987544322222 233889999999999876 48998886 58886 44543
No 139
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=2.3e-18 Score=196.51 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=133.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEE----EEecCCc
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----YVAQSPW 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~----~v~Q~~~ 431 (1156)
..++.+++++.|.. +..+++++ |+|.+|++++|+||||||||||+++|+|..+|+.|.|.+.|.-. .....
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~-- 118 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-- 118 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--
Confidence 35788999999963 35799999 99999999999999999999999999999999999887766310 00000
Q ss_pred CCCccHHHHhhcCCCC---CHHHHHHHHHHhCCchhhhhCCCCCcc-ccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 432 IQSGKIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFGDQT-IIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~g~~t-~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
+.....+..+.+.... ..+++......+.+.+.+.. .|.+. .+-+...+||+|| ||+++| ..+|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---- 188 (347)
T 2obl_A 119 LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---- 188 (347)
T ss_dssp SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC----
T ss_pred hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc----
Confidence 0000001111111111 12444444444444433221 12111 1114467899999 899999 578876
Q ss_pred CCCCCcCHHHHHHHHHHHHh--c--CCC-----EEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 508 DPFSPVDDHTGAHLFKFCWV--S--SSK-----TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 508 ep~s~lD~~~~~~i~~~~~~--~--~~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+|+|+.....+.+.+.. . .|. ||+++|||++ -+.||++++|.+|+|+.+|+.+++
T Consensus 189 --t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 --RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999888776543 2 366 8999999998 456999999999999998876654
No 140
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=5.6e-17 Score=197.10 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=113.7
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhh-cCCCCCHHHHHHHHHH
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENIL-FGKEMDRERYERVLEA 458 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~-~~~~~~~~~~~~~~~~ 458 (1156)
+..+++|++++|+|+||||||||++.++|..++. |. ..+.|++|++. ..++++.. +|. +.+. . ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~---~~l~~~~~~~g~--~~~~---~-~~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESR---AQLLRNAYSWGM--DFEE---M-ER 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCH---HHHHHHHHTTSC--CHHH---H-HH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCH---HHHHHHHHHcCC--CHHH---H-Hh
Confidence 4589999999999999999999999999998874 43 11456778763 25555542 332 2111 1 11
Q ss_pred hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHH-----HHHHHHHHHH--hcCCC
Q 037346 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH-----TGAHLFKFCW--VSSSK 531 (1156)
Q Consensus 459 ~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~-----~~~~i~~~~~--~~~~~ 531 (1156)
.++ .........+|||||+||+++||++..+|+++|+| ||++||.. .++.+.+.+. ...|.
T Consensus 341 ~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 341 QNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp TTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 222 22233445689999999999999999999999999 99999998 7777766442 25689
Q ss_pred EEEEEccCC----------Cccc-cCCEEEEEeCCe
Q 037346 532 TVIYATHQV----------EFLP-AADLILVIKDGK 556 (1156)
Q Consensus 532 tvi~vtH~~----------~~~~-~~d~i~~l~~G~ 556 (1156)
|+|+++|+. ..+. .||+|++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999998 6665 499999999887
No 141
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.66 E-value=8.3e-18 Score=184.80 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=101.4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCe-EEEEecCCcCCCccHHHHhhcCCCCCHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGT-KAYVAQSPWIQSGKIEENILFGKEMDRER 451 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~-~~~v~Q~~~~~~~ti~eni~~~~~~~~~~ 451 (1156)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.|++|++.-+ +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~---v-------------- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI---V-------------- 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE---E--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee---e--------------
Confidence 5899999 9999999999999999999999999999998 999988763 45555543100 0
Q ss_pred HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 452 ~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
. +..+|....+| |++|||||..+|+++++|||+ |+++...+++.+ ..|.
T Consensus 76 ----------~----------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~--~~g~ 124 (261)
T 2eyu_A 76 ----------N----------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA--ETGH 124 (261)
T ss_dssp ----------E----------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH--HTTC
T ss_pred ----------e----------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH--ccCC
Confidence 0 00112112233 899999999999999999999 998876665543 4689
Q ss_pred EEEEEccCCCccccCCEEEEEeC
Q 037346 532 TVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 532 tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
|+++++|+.+....||++++|..
T Consensus 125 ~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 125 LVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EEEEEECCSSHHHHHHHHHHTSC
T ss_pred EEEEEeCcchHHHHHHHHhhhcC
Confidence 99999999886666899888753
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.66 E-value=4.6e-19 Score=188.77 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=110.8
Q ss_pred EEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCCC---
Q 037346 956 RYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPL--- 1031 (1156)
Q Consensus 956 ~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~--- 1031 (1156)
...+++.++|.||||||||||+++|.|+++ .|.+++.....-+....|+.+++++|++.+|.. |+++|+.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~ 91 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence 345777789999999999999999999986 345554222111112346789999999988854 566665321
Q ss_pred -C-----CCCHHHHHHH----------HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC----CHHHHHHHH
Q 037346 1032 -E-----EHADEQIWEA----------LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV----DTATDNQIQ 1091 (1156)
Q Consensus 1032 -~-----~~~deei~~a----------l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L----D~~te~~I~ 1091 (1156)
. ..+.+++.+. ++.+++.+.....|..+. ||+.+|++++|||||+++ |+.+.+.++
T Consensus 92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~ 167 (207)
T 1znw_A 92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT----VFLAPPSWQDLQARLIGRGTETADVIQRRLD 167 (207)
T ss_dssp GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1 1123344433 334455444444554443 899999999999999998 677888888
Q ss_pred HHHHHhc--CCceEEEeecCccccc-ccCEEEEEeC
Q 037346 1092 QTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNH 1124 (1156)
Q Consensus 1092 ~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~ 1124 (1156)
+.+++.. .++|+|+|+|+++.+. .||+|++|..
T Consensus 168 ~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 168 TARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 8887764 3789999999999876 4999999853
No 143
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.66 E-value=2.3e-18 Score=195.90 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=101.8
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
+++++...+++.+++.|+||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.+++++|
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g--------------- 224 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG--------------- 224 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB---------------
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC---------------
Confidence 33444445667778899999999999999999999999999999976 3444445666776652
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhhcCCc---cccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCc-eEEEe
Q 037346 1031 LEEHADEQIWEALDKCQLGDEVRKKKGKL---DSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC-TVVTI 1106 (1156)
Q Consensus 1031 ~~~~~deei~~al~~~~l~~~i~~lp~gl---~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~-TvI~I 1106 (1156)
+|. ...||||+++|++|||||||+ .+ +.+.|+....++ |+|++
T Consensus 225 --------------------------gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l~~~~~g~~tvi~t 271 (330)
T 2pt7_A 225 --------------------------GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCSGHKGTLTT 271 (330)
T ss_dssp --------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHHHHHHTTCCCEEEE
T ss_pred --------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHHHHHhcCCCEEEEE
Confidence 121 133899999999999999998 22 455666555555 79999
Q ss_pred ecCcccccccCEEEEEeCcEEeeecChhH
Q 037346 1107 AHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1107 aHrl~ti~~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
+|++++...||||++|++|+....+-+.+
T Consensus 272 ~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 272 LHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp EECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred EcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 99999888999999999986433343433
No 144
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=3.6e-17 Score=207.28 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=116.0
Q ss_pred ccEEEeeeEEEeCC--CCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHH--------hCCCCCCCcEEEEcCeEEE
Q 037346 356 TAIEIIDGSFSWDF--SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI--------LGGVPKESGIIRLCGTKAY 425 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i--------~g~~~~~~G~i~~~g~~~~ 425 (1156)
..+.+++...-+-. .++.++++|++|++++|++++|+|||||||||+++++ .|.+.|.++.. ++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~ 704 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSI 704 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EEC
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chH
Confidence 35777776433311 1245799999999999999999999999999999999 66655544321 111
Q ss_pred EecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCe
Q 037346 426 VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADI 503 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~i 503 (1156)
+ +.| +...++.+++ ...+|+|++++..+|+++ ..+|++
T Consensus 705 ~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 705 V------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp C------------SEE--------------EEECC-----------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred H------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0 000 0001111111 135788888888888888 899999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+|||||++|+|+.....+...++. ..|.|+|++||+.+....||++..+++|++...++.+++
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999988776443322 358999999999888888999999999999877766554
No 145
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=3e-18 Score=178.77 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
|++++|+||||||||||++.|+|+++ ++| |.++| +++|++|+. .++ ++|+.--
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~---------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRV---------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEEC----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcc----------
Confidence 78999999999999999999999999 889 87766 357888765 222 1222100
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH-HHHH---hhccCCCeeeeeC--CCCCcCHHHHHHHHHHHHhc
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI-QIAR---PLYQDADIFLLDD--PFSPVDDHTGAHLFKFCWVS 528 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi-~lAr---al~~~~~illlDe--p~s~lD~~~~~~i~~~~~~~ 528 (1156)
.. ..-+......+|+.+..+|||||+++ +|++ |+..+|+++|||| |+..+|....+.+.+.+ .
T Consensus 65 -----~~----~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l-~- 133 (189)
T 2i3b_A 65 -----GL----EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL-S- 133 (189)
T ss_dssp -----CC----CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH-H-
T ss_pred -----cc----cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH-h-
Confidence 00 00001122367888899999999998 5566 7899999999999 89999998777665443 3
Q ss_pred CCCEEEE--Ec--cCCCccccCCEEEEEeCCeEEEc
Q 037346 529 SSKTVIY--AT--HQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 529 ~~~tvi~--vt--H~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
..+|+|+ ++ |+.+ +..+|+|..+++|+|++-
T Consensus 134 ~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 3445554 34 9876 456788888888998764
No 146
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.64 E-value=6.4e-16 Score=178.52 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=61.3
Q ss_pred ccccc------cCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEee
Q 037346 1063 GRVLL------KKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1063 ARALL------r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE 1129 (1156)
||||+ .+|++|||||||++||+++...+.+.|+++. .++|||+|+|+++.+..||+|++|++|+|++
T Consensus 291 a~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 291 SLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred HHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 67777 7999999999999999999999999998864 4789999999999988999999999999986
No 147
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.64 E-value=8.2e-18 Score=173.99 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=94.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++|.||||||||||+++|+|++. |.++|.+..+......++++++++|++ +..+|+...-...+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~~~~~~~------ 66 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFSSKFFTS------ 66 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEEETTCCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHHhhcCCc------
Confidence 47889999999999999999995 667887765443225678999999997 44555410000000
Q ss_pred HHHcCCChHHHhhcCCccc-------cccc-----cccCCCEEEEec--CCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1043 LDKCQLGDEVRKKKGKLDS-------QGRV-----LLKKSKVLVLDE--ATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s-------~ARA-----LLr~~~ILiLDE--aTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
.+.+...+..+.. .||| ++.+|++||||| ||+++|+.+.+.+.+.+++ .+.|+|+++|
T Consensus 67 ------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H 138 (178)
T 1ye8_A 67 ------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIP 138 (178)
T ss_dssp ------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECC
T ss_pred ------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEc
Confidence 0111221222221 2786 999999999999 9999999999999999976 4677999997
Q ss_pred ---Ccccccc-cCEEEEEeCcEEeee
Q 037346 1109 ---RITSVLD-SAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1109 ---rl~ti~~-~D~I~Vl~~G~IvE~ 1130 (1156)
+...+.. ||+ .+|+|+|.
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEEC
T ss_pred cCCCchHHHHHHhc----CCcEEEEe
Confidence 4444433 555 56787774
No 148
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.63 E-value=5.7e-16 Score=154.35 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=69.3
Q ss_pred ccCCCCCCHHHHHHHHHH------HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCE
Q 037346 477 GERGINLSGGQKQRIQIA------RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADL 548 (1156)
Q Consensus 477 ~~~g~~LSgGqkqRi~lA------ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~ 548 (1156)
...+.+||||||||++|| ||++.+|+++||||||++||+...+.+.+.+.. ..|+|+|++||+.+....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 356789999999999876 999999999999999999999999988876644 347899999999965667999
Q ss_pred EEEE--eCCeE
Q 037346 549 ILVI--KDGKI 557 (1156)
Q Consensus 549 i~~l--~~G~i 557 (1156)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 149
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.62 E-value=6.6e-17 Score=178.52 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=87.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCCCCCCC----HH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHA----DE 1037 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~----de 1037 (1156)
++|.||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.... .+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47889999999999999999999999999999998743 3456889999999988866 9999998764322 23
Q ss_pred HHHHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccccc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~ 1114 (1156)
.+.+.++.--.+.....+.+|-. ..|||++. +++|||||++||+.. ..+.+.|.+ ..|+|+|.|+.+++.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 44444442111112223333332 23888875 999999999999976 344444443 389999999987764
Q ss_pred c
Q 037346 1115 D 1115 (1156)
Q Consensus 1115 ~ 1115 (1156)
.
T Consensus 155 ~ 155 (270)
T 3sop_A 155 L 155 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 150
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=4.4e-17 Score=178.20 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=101.4
Q ss_pred CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCeEEEEecCCcCCCccHHHHhhcCCC-
Q 037346 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGTKAYVAQSPWIQSGKIEENILFGKE- 446 (1156)
Q Consensus 371 ~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~~~~v~Q~~~~~~~ti~eni~~~~~- 446 (1156)
++.++|+|+||++++|++++|+||||||||||+++|.|.+ |.+.+ ...++|++|++.....|+.+|+.+...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999875 43322 235889999975445689998764211
Q ss_pred --------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 447 --------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 447 --------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
++.+.+.+.++.. . .+.. .....||+||+||+++ +++..+|+++|||||....|...
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l--~-------~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNI--V-------EGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHH--H-------TTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-
T ss_pred CCCCCcccccHHHHHHHHHHH--H-------CCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-
Confidence 2233344444332 1 1111 2335799999999988 78899999999999988887642
Q ss_pred HHHHHHHHhcCCCEEEEEccCCCcc-cc-CCEEEEEeCCeEEEccChHHHH
Q 037346 519 AHLFKFCWVSSSKTVIYATHQVEFL-PA-ADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 519 ~~i~~~~~~~~~~tvi~vtH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
. ...+.|++++||+...+ +. ++.+ ++|+ +.+++.
T Consensus 151 ---~----~~~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 151 ---R----DMFHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp ---H----TTCSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ---H----HhcCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 1 22478999999973333 33 3333 5564 455554
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.62 E-value=1e-16 Score=180.63 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=103.8
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-EEEEcCeEEEEecCCcCCCccHHH------------
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-IIRLCGTKAYVAQSPWIQSGKIEE------------ 439 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~i~~~g~~~~v~Q~~~~~~~ti~e------------ 439 (1156)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|. |+..+.. ...++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~------~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG------LAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE------EEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE------EEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 3589999999999999999999999999999999999998877 443 2222210 001111
Q ss_pred ---HhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH-HHHHHHHHhhccCCCeeeeeCCCC---C
Q 037346 440 ---NILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ-KQRIQIARPLYQDADIFLLDDPFS---P 512 (1156)
Q Consensus 440 ---ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq-kqRi~lAral~~~~~illlDep~s---~ 512 (1156)
++..+. .+++.+.+..+.+ ++..+ -.+.+...++|.+| +||+. |+++..+|+++++|||++ +
T Consensus 94 ~~~~l~~~~-~~~~~~~~~~~~~-----l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 94 QSDSLKREI-IENGKFDQWFDEL-----FGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp GCHHHHHHH-HHHTHHHHHHHHH-----HSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred hccccccCC-CCHHHHHHHHHHH-----hccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 121110 0111122222211 11111 01222334689999 77777 999999999999999999 4
Q ss_pred ---cCH-HHHHHHHHHHHh---cCCCEEEEEccCC--C--------------------ccc-cCCEEEEEeCCeE
Q 037346 513 ---VDD-HTGAHLFKFCWV---SSSKTVIYATHQV--E--------------------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 513 ---lD~-~~~~~i~~~~~~---~~~~tvi~vtH~~--~--------------------~~~-~~d~i~~l~~G~i 557 (1156)
+|. .....+.+.+.. ..|.|||++||+. + .+. .||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 444555554422 3489999999995 4 454 5999999998875
No 152
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.61 E-value=3.3e-17 Score=168.81 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc--cccccchhccC
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT--MFEGTTRSNLD 1029 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~--LF~gTIr~Nl~ 1029 (1156)
||||+.++++-++|.|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 5889998998889999999999999999653 2222 2334455 67788862 33443333321
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccc--------cccccccCCCEEEEecCCcCCCHHHH--------------
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDS--------QGRVLLKKSKVLVLDEATASVDTATD-------------- 1087 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s--------~ARALLr~~~ILiLDEaTS~LD~~te-------------- 1087 (1156)
...+.....+....+... ...+ .|||+..+|++|+|||||++||+.++
T Consensus 64 --------~~~~~~~~~g~~~~~~~~--~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 64 --------YIVSKRLQLGKLTVVDAT--NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp --------HHHHHHHHTTCCEEEESC--CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred --------HHHHHHHhCCCeEEEECC--CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 112222233332222211 1112 28999999999999999999999955
Q ss_pred --HHHHHHHHHhc-CCceEEEeecCcccccccCEE
Q 037346 1088 --NQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMV 1119 (1156)
Q Consensus 1088 --~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I 1119 (1156)
+.+.+.|++.. +|.|+|+|+|+++.+..++++
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765542 388999999999999887765
No 153
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.61 E-value=7.9e-18 Score=188.76 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=114.2
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccc-ccc-ccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPT-MFE-GTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~-LF~-gTIr~Nl~ 1029 (1156)
.+++.++|.|+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++. .|+++|+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 445556899999999999999999999999999999999987754 2334 457999999987 654 58999985
Q ss_pred CCC-CCCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhcCCce
Q 037346 1030 PLE-EHADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102 (1156)
Q Consensus 1030 ~~~-~~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~~~~T 1102 (1156)
... ...|. ..++.+|+.+....++..|. ..|||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|
T Consensus 178 ~~~~~~~d~---~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t 249 (302)
T 3b9q_A 178 RGKEEGYDV---VLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGIT 249 (302)
T ss_dssp HHHHTTCSE---EEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCC
T ss_pred HHHHcCCcc---hHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCC
Confidence 321 00111 23445555443333333332 23899999999 99999 99999998653 22322 13789
Q ss_pred EEEeec---------Cccccc-ccCEEEEEeCcEEe
Q 037346 1103 VVTIAH---------RITSVL-DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1103 vI~IaH---------rl~ti~-~~D~I~Vl~~G~Iv 1128 (1156)
+|++|| .++.+. ..+.|.++..|+.+
T Consensus 250 ~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 250 GLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999999 223332 35789999999754
No 154
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=3.5e-18 Score=198.32 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=120.5
Q ss_pred EEEEEEEEEcCCC--------------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh
Q 037346 949 NIRHLQVRYAPNL--------------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT 1008 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~--------------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~ 1008 (1156)
.++||++..++++ .++|.||||||||||+++|+|+++|++|+|.++|.++. |
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~- 109 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M- 109 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e-
Confidence 5677888877777 67899999999999999999999999999999998764 2
Q ss_pred cCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHh--hcCCc--c---cccccccc----------CCC
Q 037346 1009 RLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRK--KKGKL--D---SQGRVLLK----------KSK 1071 (1156)
Q Consensus 1009 ~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~--lp~gl--~---s~ARALLr----------~~~ 1071 (1156)
.++++|++....-|++||+.++.. ++.+.++++.+++.+.-.. +..|. . ..||||.+ +|+
T Consensus 110 -~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 110 -ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp -CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred -eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 288999986556799999876432 3457788888887653111 22221 0 11899999 999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHhc---------C-CceEEEeecCccc--ccc-cCEEE
Q 037346 1072 VLVLDEATASVDTATDNQIQQTLRQHF---------S-DCTVVTIAHRITS--VLD-SAMVL 1120 (1156)
Q Consensus 1072 ILiLDEaTS~LD~~te~~I~~~l~~~~---------~-~~TvI~IaHrl~t--i~~-~D~I~ 1120 (1156)
+|+|||||++||+.+.+.+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999988887762 1 2567788998775 443 66663
No 155
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=1.6e-16 Score=198.17 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=105.2
Q ss_pred ccEEEeeeEEEeCCC--CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CCCcEEEEc--CeEEEEecCC
Q 037346 356 TAIEIIDGSFSWDFS--SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KESGIIRLC--GTKAYVAQSP 430 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~~G~i~~~--g~~~~v~Q~~ 430 (1156)
+.++++++ .+|-- ++.++++|+||+ |++++|+||||||||||+++|+|... +..|.+.-. ..+++++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 45888877 33321 246899999999 99999999999999999999999864 566754211 12445544
Q ss_pred cCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCeeeee
Q 037346 431 WIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADIFLLD 507 (1156)
Q Consensus 431 ~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~illlD 507 (1156)
++. .++.||+.+ .+|+|+++++.+|+++ +.+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 222 244444422 3689999999999999 9999999999
Q ss_pred CC---CCCcCHHHH-HHHHHHHHhcCCCEEEEEccCCCccccC
Q 037346 508 DP---FSPVDDHTG-AHLFKFCWVSSSKTVIYATHQVEFLPAA 546 (1156)
Q Consensus 508 ep---~s~lD~~~~-~~i~~~~~~~~~~tvi~vtH~~~~~~~~ 546 (1156)
|| |+++|.... ..+.+.+.. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhh
Confidence 99 999999875 356665544 688999999998776544
No 156
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.59 E-value=1e-17 Score=178.92 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=107.6
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCC---ccHHHHhhcC--C--CCCHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS---GKIEENILFG--K--EMDRERYERV 455 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~---~ti~eni~~~--~--~~~~~~~~~~ 455 (1156)
.++|++++|+||||||||||+++|.|.++| .++|++|++.++. .|+++|+.+. . ..+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999998875 6899999998763 3777776543 2 2456777777
Q ss_pred HHHhCCchhhhhCCCCCccccccCCCCCCHHH----HHHHHHHHhhccCCCeeeeeCCCCC-------cCHHHHHHHHHH
Q 037346 456 LEACSLKKDLEVLPFGDQTIIGERGINLSGGQ----KQRIQIARPLYQDADIFLLDDPFSP-------VDDHTGAHLFKF 524 (1156)
Q Consensus 456 ~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq----kqRi~lAral~~~~~illlDep~s~-------lD~~~~~~i~~~ 524 (1156)
++..++.+.+.. .+..+|+|| +||+++||+++.+|+++++|||+++ ||+..+..+.+.
T Consensus 74 l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 74 AQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 777766544332 345677775 5799999999999999999999999 999888777665
Q ss_pred HHh---cCCCEEEEEccCC
Q 037346 525 CWV---SSSKTVIYATHQV 540 (1156)
Q Consensus 525 ~~~---~~~~tvi~vtH~~ 540 (1156)
+.+ .+|+|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 533 3589999999974
No 157
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=3.1e-16 Score=169.58 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=87.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
-+++|++++|+||||||||||++.|+|.+.+..|....++...|+..+.. ...++...+.+..++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---------------~~~~~i~~~~~~~~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---------------FRPERIREIAQNRGL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---------------CCHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---------------CCHHHHHHHHHHcCC
Confidence 68999999999999999999999999966653333222333444433321 111222223333332
Q ss_pred chh--hhhCCCCCccccccCCCCCCHH-HHHHHHHHHhhcc-------CCCeeeeeCCCCCcCHH-------HH-----H
Q 037346 462 KKD--LEVLPFGDQTIIGERGINLSGG-QKQRIQIARPLYQ-------DADIFLLDDPFSPVDDH-------TG-----A 519 (1156)
Q Consensus 462 ~~~--~~~~~~g~~t~v~~~g~~LSgG-qkqRi~lAral~~-------~~~illlDep~s~lD~~-------~~-----~ 519 (1156)
... .+.+. + ....+++ |++++..+++++. +|+++++|||++.+|+. .+ .
T Consensus 86 ~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~ 156 (231)
T 4a74_A 86 DPDEVLKHIY------V---ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 156 (231)
T ss_dssp CHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred CHHHHhhcEE------E---EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence 211 00000 0 0112333 3444555555554 99999999999999984 11 1
Q ss_pred HHHHHHHh---cCCCEEEEEccCCC----ccc-cCCEEEEEeCC
Q 037346 520 HLFKFCWV---SSSKTVIYATHQVE----FLP-AADLILVIKDG 555 (1156)
Q Consensus 520 ~i~~~~~~---~~~~tvi~vtH~~~----~~~-~~d~i~~l~~G 555 (1156)
.+++.+.. ..|.|+|++||..+ .+. .||++++|++|
T Consensus 157 ~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 157 KHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 34443322 35899999999544 465 49999999875
No 158
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.57 E-value=8.2e-17 Score=167.86 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=114.0
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCC-CHH--
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEH-ADE-- 1037 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~-~de-- 1037 (1156)
+.++|.|+||||||||+++|+|+++ ++| |.+||.++.++. .+++++++++|+. .|+ +.|+...... ++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCCSSSC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCCcccc
Confidence 4568899999999999999999999 999 999999987553 5789999999996 443 3444321100 000
Q ss_pred --HH------HHHHHHcCCChHHHhhcCCccccc---cccccCCCEEEEec--CCcCCCHHHHHHHHHHHHHhcCCceEE
Q 037346 1038 --QI------WEALDKCQLGDEVRKKKGKLDSQG---RVLLKKSKVLVLDE--ATASVDTATDNQIQQTLRQHFSDCTVV 1104 (1156)
Q Consensus 1038 --ei------~~al~~~~l~~~i~~lp~gl~s~A---RALLr~~~ILiLDE--aTS~LD~~te~~I~~~l~~~~~~~TvI 1104 (1156)
.+ ....++.. +...+ +|++++|+|||||| ||.+.|.+..+.|.+.+++ ..|+|
T Consensus 74 ~~~v~~~~~~ls~~er~~-----------~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~i 139 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLA-----------LPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTII 139 (189)
T ss_dssp CEESSSSEECHHHHHTTT-----------TTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCE
T ss_pred ccccceEEEcchHHHHHH-----------HHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEE
Confidence 00 01111111 11222 47899999999999 8999999998888888874 33444
Q ss_pred ----EeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1105 ----TIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1105 ----~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
+|+||.+ ...+|+|..+++|+|++... +|.+..+..+++..
T Consensus 140 lgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 140 LGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVTCV 184 (189)
T ss_dssp EEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHHHH
T ss_pred EEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHHHH
Confidence 4459976 56789999999999998653 23455666665543
No 159
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=5.1e-16 Score=196.14 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=101.6
Q ss_pred cEEEeeeEEEe----CCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCeEEEEecCCc
Q 037346 357 AIEIIDGSFSW----DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGTKAYVAQSPW 431 (1156)
Q Consensus 357 ~i~~~~~~f~~----~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~~~~v~Q~~~ 431 (1156)
.+.+++...-. -..++.++++|++|++++|++++|+|||||||||||+++.+..-.. .| .++|++..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~ 711 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEA 711 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhh
Confidence 57776653211 0112468999999999999999999999999999999986431110 01 12222110
Q ss_pred CCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 432 IQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
. ..+.++|. ...++.+. +..+.+++|+|++|+..++++ +.+|+++|||||++
T Consensus 712 ~--i~~~d~i~--------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 712 T--IGIVDGIF--------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp E--EECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred h--hhHHHHHH--------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 0 00001110 00011111 122336799999999999999 78999999999999
Q ss_pred CcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccccCCEE
Q 037346 512 PVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
|+|+.....+...++. ..|.|+|++||+.+....||+.
T Consensus 764 GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 764 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999988777643332 3589999999998877656543
No 160
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.56 E-value=1.3e-14 Score=171.98 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEccCCCccccCCEEEEEe
Q 037346 482 NLSGGQKQRIQIARPLY----QDADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIK 553 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~----~~~~illlDep~s~lD~~~~~~i~~~~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~ 553 (1156)
.||||||||++||++++ .+|+++|||||+++||+.....+.+.+... .+.++|++||+...+..||+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 59999999999999999 689999999999999999999988766442 3679999999987777899999985
No 161
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.56 E-value=4.2e-17 Score=186.00 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=115.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccc-cc-cccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPT-MF-EGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~-LF-~gTIr~Nl~ 1029 (1156)
.+++.++|.|+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++ ..|+++|+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 345556899999999999999999999999999999999987653 2333 567999999987 55 458899985
Q ss_pred CCC-CCCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhcCCce
Q 037346 1030 PLE-EHADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102 (1156)
Q Consensus 1030 ~~~-~~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~~~~T 1102 (1156)
... ...|. ..++.+|+.+....++..|. ..|||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|
T Consensus 235 ~~~~~~~d~---~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~~-~~g~t 306 (359)
T 2og2_A 235 RGKEEGYDV---VLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGIT 306 (359)
T ss_dssp HHHHTTCSE---EEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCC
T ss_pred HHHhCCCHH---HHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHHH-hcCCe
Confidence 321 00111 23445555443333333332 23899999999 99999 99999998763 22322 13789
Q ss_pred EEEeecC---------ccccc-ccCEEEEEeCcEEe
Q 037346 1103 VVTIAHR---------ITSVL-DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1103 vI~IaHr---------l~ti~-~~D~I~Vl~~G~Iv 1128 (1156)
+|++||- ++.+. ..+.|..+..|+.+
T Consensus 307 ~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 307 GLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp EEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9999992 33332 35789999999754
No 162
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.55 E-value=6.7e-16 Score=177.11 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=100.5
Q ss_pred Cccccc-eEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCC----cE-EEEcCe-------EEEEecCCcCCCccHH
Q 037346 374 PTLRNI-NLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKES----GI-IRLCGT-------KAYVAQSPWIQSGKIE 438 (1156)
Q Consensus 374 ~~l~~i-~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~----G~-i~~~g~-------~~~v~Q~~~~~~~ti~ 438 (1156)
+.|+++ +..+++|++++|+||||||||||++.+++.+ +|++ |. |++++. +++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 457766 6899999999999999999999999999998 6666 56 666652 2344555444444555
Q ss_pred HHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc-------cCCCeeeeeCCCC
Q 037346 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY-------QDADIFLLDDPFS 511 (1156)
Q Consensus 439 eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~-------~~~~illlDep~s 511 (1156)
+||.+...++ |++|+|++.++++++ .+|+++|+||||+
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5554432211 467788888888887 6899999999999
Q ss_pred CcCHHH------------HHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccCh
Q 037346 512 PVDDHT------------GAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 512 ~lD~~~------------~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 563 (1156)
++|+.. ..++...+.. ..+.|+|+++|....... ++.......|++++.+..
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999862 1223332222 358999999998764432 334555666776655543
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.55 E-value=1.9e-16 Score=178.15 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=81.7
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC-CCCCCcEEEEcC----------eEEEEecC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG-VPKESGIIRLCG----------TKAYVAQS 429 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~-~~~~~G~i~~~g----------~~~~v~Q~ 429 (1156)
+|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++| .++|++|+
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 36778885 457999999988 99999999999999999997 888888 54433 35788887
Q ss_pred CcCC-CccHHHHhhcCCCCCH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 430 PWIQ-SGKIEENILFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 430 ~~~~-~~ti~eni~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
+..+ ..|+.|+..++...+. ++++.+.+. +.+.. .....++|||||||+.+|||+. ++++|
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 7654 4589999888643211 222222221 11111 1223479999999999999986 99999
Q ss_pred CCCCC-cCHHHHHHHHHHHHhcCCCEEEEEccCCC
Q 037346 508 DPFSP-VDDHTGAHLFKFCWVSSSKTVIYATHQVE 541 (1156)
Q Consensus 508 ep~s~-lD~~~~~~i~~~~~~~~~~tvi~vtH~~~ 541 (1156)
|||++ ||+... .+++.+....+.++|+.+||+.
T Consensus 135 ePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 135 SPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence 99985 999874 3334332233678888899874
No 164
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.54 E-value=7.9e-16 Score=169.04 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=95.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.++|++ ..+++.++|.||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|+.+ +
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~--------g 81 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREV--------G 81 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEB--------T
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHh--------C
Confidence 355666 4567777899999999999999999999998 999999998875442 334556665311 1
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
++. ..+ -.+.||||..+|++|+||||| |+++...+ ++....+.||++++
T Consensus 82 l~~------------------~~l-------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~ 130 (261)
T 2eyu_A 82 EDT------------------KSF-------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTL 130 (261)
T ss_dssp TTB------------------SCH-------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEE
T ss_pred CCH------------------HHH-------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEe
Confidence 110 011 124489999999999999999 99885543 33334589999999
Q ss_pred cCcccccccCEEEEEe
Q 037346 1108 HRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1108 Hrl~ti~~~D~I~Vl~ 1123 (1156)
|+.+....|||+++|.
T Consensus 131 H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 131 HTNTAIDTIHRIVDIF 146 (261)
T ss_dssp CCSSHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHhhhc
Confidence 9988777788876554
No 165
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.54 E-value=7.9e-18 Score=197.99 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=131.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCe---eCCCCC-----hHHHhhcCeeeccc--cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK---DISLIG-----LHDLRTRLSIIPQD--PT 1018 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~-----~~~LR~~i~~VpQd--p~ 1018 (1156)
.++++ |...+++..+|.|+||||||||+++|.|+++|++|.|.++|. ++.++. ...+++.+++|+|+ +.
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence 56677 777778888899999999999999999999999999999998 565432 45688999999994 34
Q ss_pred cccccchhccCCCCCCCHHHHHHHHHHcCC---ChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQL---GDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1019 LF~gTIr~Nl~~~~~~~deei~~al~~~~l---~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
...-|+.+|+... .+.... +.... -+.+..+.+|+.-.+=| +++|++ |+++|+.+...+.+.++
T Consensus 226 ~~~~~v~~~~~~~-----ae~~~~-~~~~v~~~ld~l~~lS~g~qrvslA-l~~p~~------t~glD~~~~~~l~~ll~ 292 (438)
T 2dpy_A 226 LLRMQGAAYATRI-----AEDFRD-RGQHVLLIMDSLTRYAMAQREIALA-IGEPPA------TKGYPPSVFAKLPALVE 292 (438)
T ss_dssp HHHHHHHHHHHHH-----HHHHHT-TTCEEEEEEECHHHHHHHHHHHHHH-TTCCCC------SSSCCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----HHHHHh-CCCCHHHHHHhHHHHHHHHHHHHHH-hCCCcc------cccCCHHHHHHHHHHHH
Confidence 4456888887531 111110 00111 12233333333111223 788888 99999999999999998
Q ss_pred HhcC-----Cc-----eEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1096 QHFS-----DC-----TVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1096 ~~~~-----~~-----TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+..+ ++ ||+++||+++ ...||++++|.+|+|++.|+++++..
T Consensus 293 r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 293 RAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp TCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred HHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 8755 43 9999999999 77799999999999999999998875
No 166
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.54 E-value=2.1e-17 Score=191.23 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=129.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcC---------eEEEEec-----CCcCCCccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCG---------TKAYVAQ-----SPWIQSGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g---------~~~~v~Q-----~~~~~~~ti~ 438 (1156)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+ .++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3567665 8999999999999999999999999999998 89996533 4678999 7888899999
Q ss_pred HHhhcCCCC-------CHHHHHHHHHHhCCchh----------------h-------------hhCCCCCccccccCCCC
Q 037346 439 ENILFGKEM-------DRERYERVLEACSLKKD----------------L-------------EVLPFGDQTIIGERGIN 482 (1156)
Q Consensus 439 eni~~~~~~-------~~~~~~~~~~~~~l~~~----------------~-------------~~~~~g~~t~v~~~g~~ 482 (1156)
+|+....+. +.+....+++++..... + ..++.+.++.|++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876443 77777777776543110 1 12345778889998888
Q ss_pred CCHHHHHHHHHHHhhccCCCe--eeeeCCCCCcCHHH---H-----HHHHHHHHh--cCCCEEEEEccCCCc
Q 037346 483 LSGGQKQRIQIARPLYQDADI--FLLDDPFSPVDDHT---G-----AHLFKFCWV--SSSKTVIYATHQVEF 542 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~~i--lllDep~s~lD~~~---~-----~~i~~~~~~--~~~~tvi~vtH~~~~ 542 (1156)
+||| ||+++||+++.+|++ +|+||+|++||... . +.+.+.++. .+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999652 1 123333333 578999999999864
No 167
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.53 E-value=1.2e-15 Score=167.22 Aligned_cols=175 Identities=13% Similarity=0.038 Sum_probs=93.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceE--EeeCCeEEEEEcCCCCChHHHHHHHh--CCCCCCCcEEEEcCeEEEEecCCcCC
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINL--KVFHGMRVAVCGTVGSGKSSCLSCIL--GGVPKESGIIRLCGTKAYVAQSPWIQ 433 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l--~i~~g~~~~ivG~~GsGKSTll~~i~--g~~~~~~G~i~~~g~~~~v~Q~~~~~ 433 (1156)
+++++++..++ .|+++ + .|++|++++|+||||||||||+++|+ |..++..|.+.+++.. +.
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~------~~-- 71 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE------RA-- 71 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS------CH--
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC------CH--
Confidence 44455555443 34444 2 68999999999999999999999999 6645666666655421 00
Q ss_pred CccHHHHh-hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCc--c-ccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 434 SGKIEENI-LFGKEMDRERYERVLEACSLKKDLEVLPFGDQ--T-IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 434 ~~ti~eni-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~--t-~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
..+++.. .+| +..+.+. . .+.....+..+.... . ..-......+-++..+...+..-..+|++++||||
T Consensus 72 -~~~~~~~~~~g--~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep 144 (251)
T 2ehv_A 72 -RDLRREMASFG--WDFEKYE---K-EGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSI 144 (251)
T ss_dssp -HHHHHHHHTTT--CCHHHHH---H-TTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECH
T ss_pred -HHHHHHHHHcC--CChHHHh---h-cCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccH
Confidence 0111110 011 1111000 0 000000000000000 0 00000112334555554555445579999999999
Q ss_pred CCCcC-----HHHHHHHHHHHH--hcCCCEEEEEccCCCcc----------ccC-CEEEEEeC
Q 037346 510 FSPVD-----DHTGAHLFKFCW--VSSSKTVIYATHQVEFL----------PAA-DLILVIKD 554 (1156)
Q Consensus 510 ~s~lD-----~~~~~~i~~~~~--~~~~~tvi~vtH~~~~~----------~~~-d~i~~l~~ 554 (1156)
++++| +..++.+.+.+. ...|+|+|++||+++.. ..| |+|++|++
T Consensus 145 ~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99997 555554554432 24589999999998876 347 99999963
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.53 E-value=1.6e-15 Score=173.47 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=100.4
Q ss_pred eeeEEEeCCCCCCCccccceE-------EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCeEEEEecCCcC
Q 037346 361 IDGSFSWDFSSPNPTLRNINL-------KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGTKAYVAQSPWI 432 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~~~~v~Q~~~~ 432 (1156)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|... .+|.
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-------ed~~- 162 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-------EDPI- 162 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-------ESSC-
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-------cCcH-
Confidence 3567777532 4567777776 77899999999999999999999999999987 4555321 1111
Q ss_pred CCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCC
Q 037346 433 QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSP 512 (1156)
Q Consensus 433 ~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~ 512 (1156)
.+..+.. .+ .+. +..++.. .++-.+ +|||||..+||++++|||+
T Consensus 163 ---------e~~~~~~---------~~----~v~------q~~~~~~--~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 163 ---------EFVHESK---------KC----LVN------QREVHRD--TLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp ---------CSCCCCS---------SS----EEE------EEEBTTT--BSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred ---------Hhhhhcc---------cc----cee------eeeeccc--cCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 1110000 00 000 0111221 133322 9999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 513 VDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 513 lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
|.++.+.+.+.. ..|+|+++++|+.+.+..+||++.|..|
T Consensus 207 -d~e~~~~~~~~~--~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 -DLETIRLALTAA--ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -SHHHHHHHHHHH--HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHHHH--hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 787766554432 4689999999999988779999888554
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.52 E-value=1.4e-15 Score=166.70 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=97.5
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHh--hcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCCCCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLF--RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEH 1034 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~--rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~ 1034 (1156)
++++-++|.||||||||||+++|+ ++.++.+|.+.+++.+... .....++++++++|++..+.. ++.++.......
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhcCCEEEEEcccccccc
Confidence 467777899999999999999999 7767788888888754321 233445679999998765432 455544321111
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCC-----HHHHHHHHHHHHHhc-CCceEEEeec
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD-----TATDNQIQQTLRQHF-SDCTVVTIAH 1108 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD-----~~te~~I~~~l~~~~-~~~TvI~IaH 1108 (1156)
...+....+...++.+...... +..-..+|++|+|||||+.+| ....+.+.+.++.+. .++|||+++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH 180 (251)
T 2ehv_A 107 PSEEKFVLEDRFNVDNFLRYIY------RVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTE 180 (251)
T ss_dssp -----------CCHHHHHHHHH------HHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred ccccceeccCcccHHHHHHHHH------HHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1112222222222222221110 011135899999999999997 566666777776553 4899999999
Q ss_pred Ccccc----------ccc-CEEEEEeC
Q 037346 1109 RITSV----------LDS-AMVLLLNH 1124 (1156)
Q Consensus 1109 rl~ti----------~~~-D~I~Vl~~ 1124 (1156)
.++.+ .-| |+|++|++
T Consensus 181 ~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 181 APDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCCCcccccccChhhEeeeEEEEEee
Confidence 98876 457 99999963
No 170
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.52 E-value=5.8e-17 Score=165.93 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCeE-----------------E----EEecCCcCCCccHHHHhh
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGTK-----------------A----YVAQSPWIQSGKIEENIL 442 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~~-----------------~----~v~Q~~~~~~~ti~eni~ 442 (1156)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.- + +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 8999987631 2 556655544 111
Q ss_pred cCCCCCHHHHHHHHHHhCCchhhhh-CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 443 FGKEMDRERYERVLEACSLKKDLEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
.+++ . .+++.+.+.. +| |++|.++|+ |||||||||+||||++.+|+++
T Consensus 77 ----~~~~----~--~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEE----E--GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHH----H--HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChh----h--hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1111 1 5678888888 99 999999995 9999999999999999999874
No 171
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.52 E-value=2.3e-16 Score=182.49 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=117.9
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeecc-----ccccccccchhccCCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQ-----DPTMFEGTTRSNLDPLE 1032 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQ-----dp~LF~gTIr~Nl~~~~ 1032 (1156)
++..+++.|||||||||++++|+|+++|+ +|+|.+.|.++. + .+|+.+++|+| ++..|+++|+.||....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 34446788999999999999999999998 899988776664 2 36788999999 89999999999997643
Q ss_pred CC-------CHHHHHHHHHHcCCChHH-------------H----------------hhcCCccc---------------
Q 037346 1033 EH-------ADEQIWEALDKCQLGDEV-------------R----------------KKKGKLDS--------------- 1061 (1156)
Q Consensus 1033 ~~-------~deei~~al~~~~l~~~i-------------~----------------~lp~gl~s--------------- 1061 (1156)
+. ++++++.+++.++....+ . .++.+++.
T Consensus 211 d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G~R~ 290 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRV 290 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSSSEE
T ss_pred CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCCCEE
Confidence 32 567788888887642111 1 12333432
Q ss_pred -cccccccCCCE--EEEecCCcCCCHH----H-----HHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1062 -QGRVLLKKSKV--LVLDEATASVDTA----T-----DNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1062 -~ARALLr~~~I--LiLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.+|+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.+|||++.
T Consensus 291 ~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 291 LAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 16899999999 9999999999975 3 45789999988899999999999974
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.51 E-value=1.5e-15 Score=186.65 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=112.6
Q ss_pred eEEEEEEEEEEcCC----------------------CCceeeCCCCCCHHHHHHHHhhcccC-CCceEEEcCeeCCCC--
Q 037346 947 EVNIRHLQVRYAPN----------------------LPLVLRGRTGSGKSTLIQTLFRIVES-TAGHILIDGKDISLI-- 1001 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~----------------------~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i-- 1001 (1156)
.++++|+++.|+.. ..++|.|+||||||||+++|.|++.| ++|.|+++|.++...
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~ 89 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL 89 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence 47889999999521 12567799999999999999999988 799999999996322
Q ss_pred -ChHHHhhcCeeecccccccc-ccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecC-
Q 037346 1002 -GLHDLRTRLSIIPQDPTMFE-GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEA- 1078 (1156)
Q Consensus 1002 -~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEa- 1078 (1156)
....+|+.+++++|++.+++ .|+++|+.. +....+... .......-..+.+....|+++++|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~~~~~~--~~~s~~~i~l~i~~~~~p~LlLlDePG 156 (608)
T 3szr_A 90 VNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNAIAGEG--MGISHELITLEISSRDVPDLTLIDLPG 156 (608)
T ss_dssp SSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHHHHCSS--SCCCSCCEEEEEEESSSCCEEEEECCC
T ss_pred CccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHHhcCCc--cccchHHHHHHhcCCCCCceeEeeCCC
Confidence 24568899999999998775 488888742 111111100 00000111124556678999999999
Q ss_pred -----CcCCCHHHHHHHHHHHHHhcC---CceEEEeecCcccc-------------cccCEEEEEeCcEEeeecChhHHh
Q 037346 1079 -----TASVDTATDNQIQQTLRQHFS---DCTVVTIAHRITSV-------------LDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1079 -----TS~LD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti-------------~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
|++||+.+.+.+.+.++++.+ +.++++++|+++.. .....|+|+.++.+++.|++++++
T Consensus 157 i~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 157 ITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp ------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 999999999999999998643 45788899997633 124679999999999999876554
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.50 E-value=6.5e-16 Score=164.45 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC-----CCCCcEEEEcCe------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-----PKESGIIRLCGT------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~-----~~~~G~i~~~g~------~~~ 425 (1156)
.++++|++|.|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+...+. .-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378999999995 267888 899999999999999999999999999998 788887654221 111
Q ss_pred EecCCcCCC--------ccHHHH-------------------hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCcccccc
Q 037346 426 VAQSPWIQS--------GKIEEN-------------------ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478 (1156)
Q Consensus 426 v~Q~~~~~~--------~ti~en-------------------i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~ 478 (1156)
+ ..|-... ...+.. +..+....+++..+.++..++ | .-.++.
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~-------~---~~~v~n 145 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNI-------A---VLVLLT 145 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTC-------C---EEEEEE
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCC-------C---eEEEEe
Confidence 1 1111100 000111 111111111122222221111 1 123466
Q ss_pred CCCCCCHHHHHH-HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh
Q 037346 479 RGINLSGGQKQR-IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527 (1156)
Q Consensus 479 ~g~~LSgGqkqR-i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~ 527 (1156)
+...+|+||||| +..+++++.+|+++++||||||+|......+++.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 777899999999 8999999999999999999999999999888887644
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.50 E-value=1.8e-14 Score=155.72 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=103.2
Q ss_pred CCccccceE-EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHh-hcCCCCCHH
Q 037346 373 NPTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI-LFGKEMDRE 450 (1156)
Q Consensus 373 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni-~~~~~~~~~ 450 (1156)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.+ .|+..+.. ...+.+.+ .++.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v------~~~~~~~~--~~~~~~~~~~~~~~~~~- 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC------IYVTTEES--RDSIIRQAKQFNWDFEE- 79 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE------EEEESSSC--HHHHHHHHHHTTCCCGG-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE------EEEEcccC--HHHHHHHHHHhcchHHH-
Confidence 457888887 899999999999999999999999998887665554 34433221 01111111 11111100
Q ss_pred HHHHHHHHhCCchhhhhCCCCC-ccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc--CHHHHHHHHHHH
Q 037346 451 RYERVLEACSLKKDLEVLPFGD-QTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV--DDHTGAHLFKFC 525 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~g~-~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l--D~~~~~~i~~~~ 525 (1156)
+.. ..+ ..++...... ...+ ....|.+|.++...+.+...+|+ ++++|||++.+ |+.....+++.+
T Consensus 80 -~~~----~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 80 -YIE----KKL-IIIDALMKEKEDQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp -GBT----TTE-EEEECCC----CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred -Hhh----CCE-EEEeccccccCceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 000 000 0000000000 0000 12349999999888888888999 99999999888 987777776655
Q ss_pred Hh---cCCCEEEEEccCC--------Cccc-cCCEEEEEeCC
Q 037346 526 WV---SSSKTVIYATHQV--------EFLP-AADLILVIKDG 555 (1156)
Q Consensus 526 ~~---~~~~tvi~vtH~~--------~~~~-~~d~i~~l~~G 555 (1156)
.. ..|.|+|+++|+. ..+. .||+|++|++.
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 32 4588999999998 3455 49999999854
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.48 E-value=7.2e-15 Score=168.54 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=111.2
Q ss_pred EEcCCCCceeeCCCCCCHHHHHHHHhhcc--cCCC----ce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 956 RYAPNLPLVLRGRTGSGKSTLIQTLFRIV--ESTA----GH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 956 ~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++++.-+.|.|++|||||||++.+++.+ +|++ |+ |+||+.+.. .++++++++|++.++..++.+|+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni 200 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHI 200 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCE
Confidence 34556667888999999999999999998 6666 67 999998752 26778999999999988999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHH-------H-----HHHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTAT-------D-----NQIQQTLRQ 1096 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~t-------e-----~~I~~~l~~ 1096 (1156)
.+......+...+.++.+ ...+.++.+|. .+|++||+||||+.+|++. + ..+...|.+
T Consensus 201 ~~~~~~~~~~~~~~l~~~--~~~~~~lS~G~--------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~ 270 (349)
T 1pzn_A 201 YVARAFNSNHQMLLVQQA--EDKIKELLNTD--------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 270 (349)
T ss_dssp EEEECCSHHHHHHHHHHH--HHHHHHSSSSS--------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEecCChHHHHHHHHHH--HHHHHHhcccc--------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 765544444444444432 23333332221 6899999999999999863 1 233333444
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+. .++|||+++|....+.. ++.+.+...|++++++++..|.
T Consensus 271 la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 271 LANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred HHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 32 38999999998765432 3456778889999999887775
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.47 E-value=1.7e-14 Score=155.75 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=100.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccC-------CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVES-------TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
++++-++|.||||||||||+++|++.+.+ ..|.|++++.+.. . +++++.++|+..++..|+.+|+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~~~ 96 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHIYV 96 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcEEE
Confidence 35566789999999999999999997665 4558899987531 1 345777888888887799999976
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecCCcCCCHH-------HH-----HHHHHHHHH
Q 037346 1031 LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEATASVDTA-------TD-----NQIQQTLRQ 1096 (1156)
Q Consensus 1031 ~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEaTS~LD~~-------te-----~~I~~~l~~ 1096 (1156)
.......+..+.++.+ .+.+. +++ ..+|++|+|||||+.+|++ .+ ..+.+.|.+
T Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~ 164 (231)
T 4a74_A 97 ARAFNSNHQMLLVQQA--EDKIK----------ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 164 (231)
T ss_dssp EECCSHHHHHHHHHHH--HHHHH----------HHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EecCChHHHHHHHHHH--HHHHH----------HhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 5554433222222111 11111 111 3589999999999999984 22 134444444
Q ss_pred hc--CCceEEEeecCc----cccc-ccCEEEEEeCc
Q 037346 1097 HF--SDCTVVTIAHRI----TSVL-DSAMVLLLNHG 1125 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl----~ti~-~~D~I~Vl~~G 1125 (1156)
.. .++|||+|+|.. ..+. .||++++|++|
T Consensus 165 ~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 165 LANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 32 389999999944 4465 48999999976
No 177
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.47 E-value=1.4e-16 Score=184.73 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=120.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCC----ceEEEc----CeeCCCCChHHHhhcCeeeccccccccccchhccCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTA----GHILID----GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~----G~I~id----G~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
+...+|.|+||||||||+++|.|+++|++ |+|+++ |.++ .++..++ ++|++++|++.+|.+|+++||.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 44568999999999999999999999999 999874 6666 6666777 569999999999999999999765
Q ss_pred CCC-CHHHHHHHHHHcCCChHHHhhcCCccccccccc-cCCCEEEEec---CC------cCCCHHHHHHHHHHHHHhcC-
Q 037346 1032 EEH-ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL-KKSKVLVLDE---AT------ASVDTATDNQIQQTLRQHFS- 1099 (1156)
Q Consensus 1032 ~~~-~deei~~al~~~~l~~~i~~lp~gl~s~ARALL-r~~~ILiLDE---aT------S~LD~~te~~I~~~l~~~~~- 1099 (1156)
+.. .+..++..+...+....+ ++++. .+|++++||| |+ +++|......+.+.|.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFL----------DSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHH----------HHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred eCCchHHHHHHHHHcCCCCHHH----------HHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 432 244455444433333332 33333 4899999999 54 68999999999999977654
Q ss_pred -CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1100 -DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1100 -~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+|+++|--..-.-+|++.++++ +++.|+++||.+
T Consensus 318 ~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 318 YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 8899999986333344677777764 677888888864
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.2e-14 Score=169.23 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=97.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc--EEEEc-------CeEEEE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG--IIRLC-------GTKAYV 426 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G--~i~~~-------g~~~~v 426 (1156)
+.|.++|+++.|+ +..+++|++|+| +|+|+||||||||++.|+|...+..| .+.++ ..++|+
T Consensus 10 ~~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v 80 (418)
T 2qag_C 10 GYVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80 (418)
T ss_dssp -----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC
T ss_pred CcEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEE
Confidence 4589999999996 457999999987 99999999999999999999875443 11111 136888
Q ss_pred ecCCcCC-CccHHHHhhcCCCCCH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--
Q 037346 427 AQSPWIQ-SGKIEENILFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD-- 502 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~-- 502 (1156)
+|++.++ ..||.||+.++...+. +.+..+.+ .+. ..++++++||++||||++.+|+
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhccCCCee
Confidence 9987765 5699999998864321 11122211 111 1466778899999999999999
Q ss_pred -eeeeeCCC-CCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcc
Q 037346 503 -IFLLDDPF-SPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFL 543 (1156)
Q Consensus 503 -illlDep~-s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~ 543 (1156)
++++|||| ++||+.... +++.+ ..+.++|+|.|..+.+
T Consensus 141 vlL~ldePt~~~L~~~d~~-~lk~L--~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDIE-FMKRL--HEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEEECCC-CCSCCHHHHH-HHHHH--TTTSEEEEEEESTTSS
T ss_pred EEEEEecCcccCCCHHHHH-HHHHH--hccCcEEEEEEcccCc
Confidence 99999999 699988743 33443 2467899998876654
No 179
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.46 E-value=9.4e-14 Score=142.00 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE-
Q 037346 479 RGINLSGGQKQRIQIARPLY----QDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI- 552 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~----~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l- 552 (1156)
....||||||||++|||++. ++|+++||||||++||+.+...+.+.+.. .++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34689999999999999995 56799999999999999999998886644 4567999999998878889999865
Q ss_pred -eCCeE
Q 037346 553 -KDGKI 557 (1156)
Q Consensus 553 -~~G~i 557 (1156)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57754
No 180
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.45 E-value=1.4e-15 Score=186.92 Aligned_cols=174 Identities=19% Similarity=0.255 Sum_probs=105.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccc----------eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEcCe---
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNI----------NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGT--- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~g~--- 422 (1156)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|.++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47889999999631 13445444 366665 999999999999999999999988 7999887763
Q ss_pred -------------EEEEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -------------KAYVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -------------~~~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.+++ .||+|||.+.. ...+. .+..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~~~-----------------~~~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAIAG-----------------EGMGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHHHC-----------------SSSCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHhcC-----------------Cccccc---h
Confidence 578999987765 49999986421 11100 001111 2
Q ss_pred HHHHHHHhhccCCCeeeeeCC------CCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccc-------------c
Q 037346 489 QRIQIARPLYQDADIFLLDDP------FSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLP-------------A 545 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep------~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~-------------~ 545 (1156)
+++.++.+....|+++++||| |++||+..++.+.+.+.. ..+.+++++||+++... .
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 334455555678999999999 999999998887765533 23568889999987431 1
Q ss_pred CCEEEEEeCCeEEEccChHH
Q 037346 546 ADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 546 ~d~i~~l~~G~i~~~g~~~~ 565 (1156)
...|+|+.++.++..|+.++
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTC
T ss_pred CceEEEecchhhcCcccHHH
Confidence 35688888888777776543
No 181
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=2.4e-14 Score=160.46 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------------EEEEecCCcCCC-ccHHHHhhcC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------------KAYVAQSPWIQS-GKIEENILFG 444 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------------~~~v~Q~~~~~~-~ti~eni~~~ 444 (1156)
+|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++.++. .++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998762 578999886654 4788888643
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCcCHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPVDDHTGAHLF 522 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~lD~~~~~~i~ 522 (1156)
. . + +.+..+-..+...+ .....++..++||++||||+..+|+ ++.|| |+++.|.... +
T Consensus 181 ~------~----~--~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~--~- 240 (304)
T 1rj9_A 181 K------A----R--GYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQ--A- 240 (304)
T ss_dssp H------H----H--TCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHH--H-
T ss_pred H------h----C--CCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHH--H-
Confidence 1 0 0 11110100111000 1112356677999999999999999 45555 5555443221 1
Q ss_pred HHHHhcCCCEEEEEccCCCc
Q 037346 523 KFCWVSSSKTVIYATHQVEF 542 (1156)
Q Consensus 523 ~~~~~~~~~tvi~vtH~~~~ 542 (1156)
.......+.|+|++||+.+.
T Consensus 241 ~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHcCCcEEEEECCccc
Confidence 11112347899999998554
No 182
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.45 E-value=4.5e-15 Score=167.14 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=107.8
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.++++++..++++-++|.||+|||||||++.|++...|.+| .|.+.+.+ .+.+.+++++..+.|+..+ +..+|
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccc
Confidence 57888888889988889999999999999999999999888 77665443 3566777776666655432 12222
Q ss_pred cCCCCCCCHHHHHHHHHH----cCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCc---C---CCH-HHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK----CQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATA---S---VDT-ATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~----~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS---~---LD~-~te~~ 1089 (1156)
+... ..++++..++.+. .++ ++...|..+... |+++..+|++|||||||+ + +|. +....
T Consensus 98 l~~~-~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~ 174 (296)
T 1cr0_A 98 LKRE-IIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDN 174 (296)
T ss_dssp HHHH-HHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred cccC-CCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence 2111 1112223222222 222 122222212111 455888999999999999 4 344 44566
Q ss_pred HHHHHHHhcC--CceEEEeecCc--c--------------------ccc-ccCEEEEEeCcEE
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRI--T--------------------SVL-DSAMVLLLNHGLI 1127 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl--~--------------------ti~-~~D~I~Vl~~G~I 1127 (1156)
+.+.|+++.+ ++|||+++|.. + .+. .||+|++|++|+.
T Consensus 175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7777776542 89999999995 3 443 6999999999875
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=2e-14 Score=180.39 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=96.4
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEc---CeEEEEecCCcCC-CccHHHHhhcCCC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLC---GTKAYVAQSPWIQ-SGKIEENILFGKE 446 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~---g~~~~v~Q~~~~~-~~ti~eni~~~~~ 446 (1156)
+.++++|++|+ ++|++++|+||||||||||+++|+|...+ ..|.. +. ..+++++| ++ ..++.||+..
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE---EEEEEC----------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH---HHhhCCHHHHHHh---
Confidence 45799999999 99999999999999999999999986421 12210 00 01222222 11 1123333211
Q ss_pred CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 447 MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
+..++|+|+++ ++.+.....+|+++|||||++|+|+.....+...++
T Consensus 666 --------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll 712 (800)
T 1wb9_A 666 --------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA 712 (800)
T ss_dssp ------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH
T ss_pred --------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 11356777765 444445688999999999999988876655432222
Q ss_pred ---hc-CCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 527 ---VS-SSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 527 ---~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
.. .|.|+|++||+.+....||++..+++|++...
T Consensus 713 ~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 713 ENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 23 58999999999988777888777888887643
No 184
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.43 E-value=6.5e-14 Score=157.65 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=95.8
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC------CCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE------EHA 1035 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~------~~~ 1035 (1156)
-++|.|+||||||||+++|.|+++|..|. +++++|+||++++..|+++|+.... ...
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d 154 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYN 154 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBC
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHH
Confidence 35788999999999999999999998664 5699999999999989999986432 122
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccc-------cccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDS-------QGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s-------~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
.+.+.+.++..+ .+.....+..|+. .|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|.|.|
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a 226 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDA 226 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEE
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEEC
Confidence 356777777665 2221112222332 2899999999999999999998622 1233333 3 4577777
Q ss_pred Cccccc--ccCEEEEEeCc
Q 037346 1109 RITSVL--DSAMVLLLNHG 1125 (1156)
Q Consensus 1109 rl~ti~--~~D~I~Vl~~G 1125 (1156)
..+... ..+|.+.+.+|
T Consensus 227 ~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 227 RIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp CHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 765532 24454444443
No 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.43 E-value=1.6e-14 Score=154.23 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=105.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccC--CCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc----hhccCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVES--TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT----RSNLDP 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI----r~Nl~~ 1030 (1156)
++++.++|.||||||||||+++|+|+++| .+|.|.+.+.+.+. ..++.++|++|++.+|.. |+ .+|+.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56777889999999999999999999986 78999999987653 246789999999998865 44 677754
Q ss_pred CCCC---CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1031 LEEH---ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1031 ~~~~---~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
.... +.+++.+++ .+++++||| ||+++...+.+.+. +++||++++
T Consensus 90 ~~~~yg~~~~~v~~~l------------------------~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~t 137 (219)
T 1s96_A 90 FGNYYGTSREAIEQVL------------------------ATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILP 137 (219)
T ss_dssp TTEEEEEEHHHHHHHH------------------------TTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEEC
T ss_pred HhccCCCCHHHHHHHH------------------------hcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEEC
Confidence 3221 233344333 346999999 99999999998875 578999999
Q ss_pred cCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1108 HRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1108 Hrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
|+++.+.. |+ +.+| .|+++++.+
T Consensus 138 h~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 138 PSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp SSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred CCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99998876 43 6667 578887764
No 186
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.42 E-value=7.2e-16 Score=178.78 Aligned_cols=71 Identities=21% Similarity=0.084 Sum_probs=57.0
Q ss_pred ccccceEEeeC--CeEEEEEcCCCCChHHHHHHHhCCCCCCC----cEEEEc----C-----------eEEEEecCCcCC
Q 037346 375 TLRNINLKVFH--GMRVAVCGTVGSGKSSCLSCILGGVPKES----GIIRLC----G-----------TKAYVAQSPWIQ 433 (1156)
Q Consensus 375 ~l~~i~l~i~~--g~~~~ivG~~GsGKSTll~~i~g~~~~~~----G~i~~~----g-----------~~~~v~Q~~~~~ 433 (1156)
+.+.+++++++ |+.++|+||||||||||+++|+|.++|++ |++.++ | .++|++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 887763 2 145566666656
Q ss_pred CccHHHHhhcCC
Q 037346 434 SGKIEENILFGK 445 (1156)
Q Consensus 434 ~~ti~eni~~~~ 445 (1156)
..|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 667777776653
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=9.6e-14 Score=154.78 Aligned_cols=144 Identities=14% Similarity=0.157 Sum_probs=94.8
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE------cCeEEEEecCCcCCCccHHHHh-hcCCCCCHHHHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL------CGTKAYVAQSPWIQSGKIEENI-LFGKEMDRERYER 454 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~------~g~~~~v~Q~~~~~~~ti~eni-~~~~~~~~~~~~~ 454 (1156)
.+++|++++|+||||||||||++.+++.+. .|.+.. .+.+.|+..+... ..+.+++ .++...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 478999999999999999999999998654 343322 2456777665422 1232222 2344444455555
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC--CcCHHHH---HHHHHHHHh--
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS--PVDDHTG---AHLFKFCWV-- 527 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s--~lD~~~~---~~i~~~~~~-- 527 (1156)
+++.+.+.+. .+.....||+||+|++ ++++.+|+++++|||++ ++|.... ..+++.+..
T Consensus 102 ~~~~l~l~~~-----------~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQPL-----------IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEECCC-----------TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEeec-----------CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 5555544321 2345678999998875 68888999999999999 8997433 445444422
Q ss_pred -cCCCEEEEEccCCCcc
Q 037346 528 -SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 528 -~~~~tvi~vtH~~~~~ 543 (1156)
..|.|+|+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 4589999999987643
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.41 E-value=6.8e-15 Score=156.89 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=99.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc---cchhcc--CCCC--
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG---TTRSNL--DPLE-- 1032 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g---TIr~Nl--~~~~-- 1032 (1156)
+..++|.|+||||||||+++|.|++.| ++++|+||+++++. |+++|+ .+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 63 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPD 63 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCChh
Confidence 344688999999999999999999875 58999999999854 455553 3221
Q ss_pred CCCHHHHHHHHHHcCCChHHHhhc----CCc-------cccccccccCCCEEEEecCCcC-------CCHHHHHHHHHHH
Q 037346 1033 EHADEQIWEALDKCQLGDEVRKKK----GKL-------DSQGRVLLKKSKVLVLDEATAS-------VDTATDNQIQQTL 1094 (1156)
Q Consensus 1033 ~~~deei~~al~~~~l~~~i~~lp----~gl-------~s~ARALLr~~~ILiLDEaTS~-------LD~~te~~I~~~l 1094 (1156)
....+.+.++++..++.+.+...+ .|- -..||+++.+|+++++||||++ ||+.++..+++.+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l 143 (211)
T 3asz_A 64 AFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRL 143 (211)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHH
Confidence 234577889999888877654311 110 0237899999999999999999 9999999999988
Q ss_pred HHhc--CCceEEEeecCc
Q 037346 1095 RQHF--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1095 ~~~~--~~~TvI~IaHrl 1110 (1156)
.+.. +++|++.++|+.
T Consensus 144 ~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 144 KRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 7642 588999999984
No 189
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.41 E-value=4e-14 Score=181.91 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=102.6
Q ss_pred EEEEEEEEEcC-------CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCe-eeccccccc
Q 037346 949 NIRHLQVRYAP-------NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS-IIPQDPTMF 1020 (1156)
Q Consensus 949 ~~~~Vsf~Y~~-------~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~-~VpQdp~LF 1020 (1156)
.++|++|.-.+ +.-.+|.|||||||||+++.+ |+..+ +.++| +|||++.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--
Confidence 45555555443 455678899999999999999 99864 34566 9999984
Q ss_pred cccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHH-HHHHHHHHHHhc-
Q 037346 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTAT-DNQIQQTLRQHF- 1098 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~t-e~~I~~~l~~~~- 1098 (1156)
.-|+.+||-..-.. .+.+. .++..|...+.+ -..||+++.+|+++||||||+++|+.. ...+.+.|+.+.
T Consensus 828 ~l~v~d~I~~rig~-~d~~~-----~~~stf~~em~~--~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 828 RLTPIDRVFTRLGA-SDRIM-----SGESTFFVELSE--TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp EECCCSBEEEECC---------------CHHHHHHHH--HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC-HHHHh-----hchhhhHHHHHH--HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 55788887311011 11111 133344333221 133789999999999999999999987 455677777654
Q ss_pred C-CceEEEeecCcccccc-cCEEEEEeCcEEe--eecChhH
Q 037346 1099 S-DCTVVTIAHRITSVLD-SAMVLLLNHGLIK--EYDSPTK 1135 (1156)
Q Consensus 1099 ~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~Iv--E~G~~~e 1135 (1156)
+ ++|+|++||.++.+.. +|++.|+ +|+++ +.|.+++
T Consensus 900 ~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 3 8999999999988764 8898887 58887 5665544
No 190
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.41 E-value=1e-13 Score=158.44 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=64.4
Q ss_pred ccccc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 GRVLL---------KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ARALL---------r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||+|+ .+|+|||||||||+||+...+.+.+.|.+.. .|+|++|| ++. .||+|++|++|+|++.|+|
T Consensus 277 A~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~ 351 (359)
T 2o5v_A 277 ALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQAGRFTPVADE 351 (359)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEETTEEEECCCT
T ss_pred HHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEECCEEEecCCH
Confidence 78999 8999999999999999999999999998863 89999999 454 8999999999999999999
Q ss_pred hHHh
Q 037346 1134 TKLL 1137 (1156)
Q Consensus 1134 ~eLl 1137 (1156)
+++.
T Consensus 352 ~~~~ 355 (359)
T 2o5v_A 352 EMQA 355 (359)
T ss_dssp TTSC
T ss_pred HHHh
Confidence 9874
No 191
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.41 E-value=1.5e-15 Score=169.17 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=89.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCC-----------C--CCHH
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK-----------E--MDRE 450 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~-----------~--~~~~ 450 (1156)
+++.+++|+|++|||||||.+.|.+.+++.... ...+.+|+|++++++.++++|+.++. + ++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 357899999999999999999999998763101 11345669999999999999997642 1 2333
Q ss_pred HHHHHHHHhCCchhhhhCCCCCcc------ccccCCCCCCHHHHHHHHHH--HhhccCCCeeeeeCCCCCcCHHH
Q 037346 451 RYERVLEACSLKKDLEVLPFGDQT------IIGERGINLSGGQKQRIQIA--RPLYQDADIFLLDDPFSPVDDHT 517 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~g~~t------~v~~~g~~LSgGqkqRi~lA--ral~~~~~illlDep~s~lD~~~ 517 (1156)
.. .+.+..++.|++| .+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 106 ~l---------~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LL---------QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HH---------HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HH---------HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 33 3345555666443 35666789999999999998 666 999999999999999854
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.41 E-value=6.1e-14 Score=160.43 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=87.5
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++.|||||||||++++|+|+++|+ +|.|...+ |..++. ++...++++|.+.-.. .. +-.+
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~~~~~~~v~q~~~~~~-----~~------~~~~---- 187 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---HESKKCLVNQREVHRD-----TL------GFSE---- 187 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---CCCSSSEEEEEEBTTT-----BS------CHHH----
T ss_pred EEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---hhccccceeeeeeccc-----cC------CHHH----
Confidence 455999999999999999999997 56665544 333333 3445677888654221 11 1011
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL 1122 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1122 (1156)
..||||..+|++|++|||| |.++.+.+.++. ..|+|||+++|+.+.+..+||+++|
T Consensus 188 ------------------~La~aL~~~PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l 243 (356)
T 3jvv_A 188 ------------------ALRSALREDPDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDV 243 (356)
T ss_dssp ------------------HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHT
T ss_pred ------------------HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhh
Confidence 4489999999999999999 888866655553 3489999999999999889999988
Q ss_pred eCc
Q 037346 1123 NHG 1125 (1156)
Q Consensus 1123 ~~G 1125 (1156)
..|
T Consensus 244 ~~~ 246 (356)
T 3jvv_A 244 FPA 246 (356)
T ss_dssp SCH
T ss_pred cCc
Confidence 544
No 193
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=159.65 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=107.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCCCCCcEE--------EEcCeEEEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVPKESGII--------RLCGTKAYV 426 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~~~~G~i--------~~~g~~~~v 426 (1156)
.+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|..- .|.- .. ..++|+
T Consensus 16 ~l~~~~-~~~y~---~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~-~~i~~v 87 (427)
T 2qag_B 16 TVPLAG-HVGFD---SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQL-QSNTYD 87 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEE-EEEEEE
T ss_pred eEEEee-EEEEC---Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceE-eeEEEE
Confidence 355666 77785 345 9999999999999 99999999999999999999851 1211 11 158999
Q ss_pred ecCCcCC-CccHHHHhhcCCCCCHH------------HHHHHHHHh-CCchhhhhCCCCC----ccccccCCCCCCHHHH
Q 037346 427 AQSPWIQ-SGKIEENILFGKEMDRE------------RYERVLEAC-SLKKDLEVLPFGD----QTIIGERGINLSGGQK 488 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~~~~~~------------~~~~~~~~~-~l~~~~~~~~~g~----~t~v~~~g~~LSgGqk 488 (1156)
+|++.++ ..|+.||+.||...+.. ++.+.+... ++...+...++.. --.|-..+..|+-.+
T Consensus 88 ~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 88 LQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp EEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred eecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 9998876 56999999999765431 222222222 2211111111111 011233445677666
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEcc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATH 538 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH 538 (1156)
+.++++|..+++|+++|+|+..|.+.....+++.+.. ..|.+++.++.
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7999999999999999999999998777666665532 45677777664
No 194
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.37 E-value=2.2e-16 Score=182.08 Aligned_cols=199 Identities=13% Similarity=0.020 Sum_probs=125.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--c-cccCCCCCCCccE---------
Q 037346 291 IPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTD--V-LEKMPRGNSDTAI--------- 358 (1156)
Q Consensus 291 ~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~--~-~~~~~~~~~~~~i--------- 358 (1156)
+.++.+.+..++.++..+..| .+....+.+..+..+..|++.++ .|+.... . ....+ ....+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~---~~~~itl~~l~~~g 136 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKP---SFTRRTLEDYAQQG 136 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECC---CCCCCCHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEec---CCCCCCHHHHHhcC
Confidence 568888888887776655544 22222222333344567888777 2221111 0 00111 11234
Q ss_pred EEeeeEEE---eCCCCCCCcc---------ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 359 EIIDGSFS---WDFSSPNPTL---------RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 359 ~~~~~~f~---~~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
+|+|++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC
Confidence 78899998 7521 22355 999999999999999999999999999999999999999999976
Q ss_pred ------eEEEEe-cCCcC---CCccHHHHhhcCCCCCHHH-HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ------TKAYVA-QSPWI---QSGKIEENILFGKEMDRER-YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ------~~~~v~-Q~~~~---~~~ti~eni~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++|++ |++.+ +..|+++||..+.....+. ....++.....+.+..++.|.+|.+++-..+-..+..+|
T Consensus 216 ~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp CTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 368999 88775 6779999998764321100 000000011123455667888888888777778899999
Q ss_pred HHHHHh
Q 037346 491 IQIARP 496 (1156)
Q Consensus 491 i~lAra 496 (1156)
+.....
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987764
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.35 E-value=1.9e-15 Score=159.46 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=97.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC-------------CCCcEEEEcCe-EE---------EEecCCcCCCccHHHH
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP-------------KESGIIRLCGT-KA---------YVAQSPWIQSGKIEEN 440 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~-------------~~~G~i~~~g~-~~---------~v~Q~~~~~~~ti~en 440 (1156)
++|++++|+||||||||||+++|+|+++ |..|+ ++|. .. .++|+++++++++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999886 67776 3553 11 1256777888889999
Q ss_pred hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH-hhccCCCeeeeeCCCCCcCHHHHH
Q 037346 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR-PLYQDADIFLLDDPFSPVDDHTGA 519 (1156)
Q Consensus 441 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr-al~~~~~illlDep~s~lD~~~~~ 519 (1156)
+ +|. ..+.++++++..... .++..+.|.++.... ++ .|| +++.+|++++|||+|+++|.++++
T Consensus 80 ~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 80 L-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp E-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred c-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 8 664 455666666542111 111122333333211 12 567 889999999999999999999888
Q ss_pred HHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 520 HLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 520 ~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
.|.+.+.. .++ +.++| +. ..+|+|+++++
T Consensus 144 ~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 88765533 122 24466 22 67999988874
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.35 E-value=4.4e-14 Score=150.85 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=90.3
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcCe---------EEEEecCCcCCCc-cH----HHHhhcC
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCGT---------KAYVAQSPWIQSG-KI----EENILFG 444 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g~---------~~~v~Q~~~~~~~-ti----~eni~~~ 444 (1156)
-..++|++++|+||||||||||+++|+|.++| ..|.|.+.++ ++|++|++..|.. ++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999986 6788877652 4677777655432 33 3443321
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF 524 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~ 524 (1156)
.. +.|-.+++ ++.++..++++||| ||+.....+.+.
T Consensus 91 ~~------------------------------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 GN------------------------------------YYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp TE------------------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred hc------------------------------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 10 00101121 23344557999999 999999988775
Q ss_pred HHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 525 CWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 525 ~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+. ++.||+++||+++.+.. |+ +++| .++.+++..
T Consensus 127 l~--~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 127 MP--HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp CT--TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred cc--CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 43 57899999999987754 32 5666 467776653
No 197
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=8.4e-14 Score=142.43 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=71.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCC---CceEEEcCeeCCCCC---hHHHh-hcCe----eeccccccccccchhccCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVEST---AGHILIDGKDISLIG---LHDLR-TRLS----IIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~---~~~LR-~~i~----~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
++|.|+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~----- 76 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR----- 76 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec-----
Confidence 5788999999999999999999998 899999999998887 78899 5799 899999988 443
Q ss_pred CCCCHHHHHHHHHHcCCChHHHh-hcCCcccc---------------ccccccCCCE
Q 037346 1032 EEHADEQIWEALDKCQLGDEVRK-KKGKLDSQ---------------GRVLLKKSKV 1072 (1156)
Q Consensus 1032 ~~~~deei~~al~~~~l~~~i~~-lp~gl~s~---------------ARALLr~~~I 1072 (1156)
.++++ .+++++++.. +| |+|+. |||++++|+|
T Consensus 77 ---~~~~~-----~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 ---VSEEE-----GNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp ---CCHHH-----HTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred ---CChhh-----hhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 11222 7899999998 88 88864 8999999877
No 198
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.32 E-value=8.7e-14 Score=160.38 Aligned_cols=125 Identities=20% Similarity=0.170 Sum_probs=89.7
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeec-ccccc---ccccchhccCCCCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP-QDPTM---FEGTTRSNLDPLEEH 1034 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~Vp-Qdp~L---F~gTIr~Nl~~~~~~ 1034 (1156)
+++.++|.|+||||||||+++|+|+++|++|.|.++|. .++.+..+|+.+++++ |++.+ +..|+++||
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i------ 245 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLL------ 245 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHH------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHH------
Confidence 45566788999999999999999999999999999985 4666666889999999 88765 455555553
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC-CceEEEeecCcccc
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFS-DCTVVTIAHRITSV 1113 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti 1113 (1156)
++++..+|+.+++||++. .+.. +.|+.+-. ..|++...|..+..
T Consensus 246 ----------------------------~~~l~~~pd~~l~~e~r~---~~~~----~~l~~l~~g~~~~l~t~H~~~~~ 290 (361)
T 2gza_A 246 ----------------------------RSCLRMKPTRILLAELRG---GEAY----DFINVAASGHGGSITSCHAGSCE 290 (361)
T ss_dssp ----------------------------HHHTTSCCSEEEESCCCS---THHH----HHHHHHHTTCCSCEEEEECSSHH
T ss_pred ----------------------------HHHHhcCCCEEEEcCchH---HHHH----HHHHHHhcCCCeEEEEECCCCHH
Confidence 234445789999999985 3333 34443333 45789999998877
Q ss_pred cccCEEEEEeCcE
Q 037346 1114 LDSAMVLLLNHGL 1126 (1156)
Q Consensus 1114 ~~~D~I~Vl~~G~ 1126 (1156)
..+||+..|..|.
T Consensus 291 ~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 291 LTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcc
Confidence 7788888887764
No 199
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.31 E-value=2.7e-13 Score=171.94 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=100.3
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHH--------hhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTL--------FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
+....+|++|.-.+++-.+|.|||||||||+++++ .|.+-|.++.. ++++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~d--- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIVD--- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECCS---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHHH---
Confidence 34567899999887777889999999999999999 45444443321 00000
Q ss_pred ccccc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecCCcCCCHHHHHHH-HHH
Q 037346 1018 TMFEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEATASVDTATDNQI-QQT 1093 (1156)
Q Consensus 1018 ~LF~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEaTS~LD~~te~~I-~~~ 1093 (1156)
.+|.. ...+++. .++..+- .+....|+++ +.+|+++||||||+++|+.....| ...
T Consensus 707 ~i~~~ig~~d~l~----------------~~lStf~----~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~i 766 (934)
T 3thx_A 707 CILARVGAGDSQL----------------KGVSTFM----AEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAI 766 (934)
T ss_dssp EEEEECC-------------------------CHHH----HHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHH
T ss_pred HHHHhcCchhhHH----------------HhHhhhH----HHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 01110 0111110 0111111 0111225666 789999999999999999887776 444
Q ss_pred HHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHh
Q 037346 1094 LRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1094 l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
++.+. .++|+|++||..+...-||++..+.+|++...++++++.
T Consensus 767 l~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 767 SEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp HHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred HHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 55443 389999999999988899999999999999888777653
No 200
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.31 E-value=3e-13 Score=141.56 Aligned_cols=125 Identities=15% Similarity=0.014 Sum_probs=81.5
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEEecCCcCCCccHHHHhhcCCCCCHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYVAQSPWIQSGKIEENILFGKEMDRE 450 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v~Q~~~~~~~ti~eni~~~~~~~~~ 450 (1156)
.+++|++++|+||||||||||++.|+|. +..|.|.++|. ++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 5789999999999999999999999998 67899999863 245555443 3457777775421
Q ss_pred HHHHHHHHhCCchhhhhCC--CCCccc--cccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHH
Q 037346 451 RYERVLEACSLKKDLEVLP--FGDQTI--IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~--~g~~t~--v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~ 525 (1156)
......+....++... .+.+.. .+.....+|+||+||+++||++.++|+++ +|+...+.+++.+
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 1111111111111100 011100 13344679999999999999999999876 5777766666543
No 201
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.31 E-value=7.9e-13 Score=160.21 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCC-CHHHHHHHHHHHhhccCC--CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 480 GINL-SGGQKQRIQIARPLYQDA--DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 480 g~~L-SgGqkqRi~lAral~~~~--~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
..+| ||||||||+||||++.+| ++|||||||++||+.+...+.+.+.. .+|+|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3567 999999999999999999 99999999999999999988876643 2389999999999988889999999665
Q ss_pred e
Q 037346 556 K 556 (1156)
Q Consensus 556 ~ 556 (1156)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.29 E-value=1.5e-12 Score=145.94 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=97.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccccccc-cchhccCCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPTMFEG-TTRSNLDPLE 1032 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~LF~g-TIr~Nl~~~~ 1032 (1156)
++.++|.|+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++.++.. |+++|+....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999999987754 2233 4579999999877653 6777763210
Q ss_pred C-CCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhc--CCceE
Q 037346 1033 E-HADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHF--SDCTV 1103 (1156)
Q Consensus 1033 ~-~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~Tv 1103 (1156)
. ..|. ..++.+|..+.-..++..+. ..|||+..+|+ +|+|| ||++.|. .+.+++.. .+.|+
T Consensus 182 ~~~~d~---~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~~~~~~~~~~~~~t~ 251 (304)
T 1rj9_A 182 ARGYDL---LFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------LEQAKKFHEAVGLTG 251 (304)
T ss_dssp HHTCSE---EEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------HHHHHHHHHHHCCSE
T ss_pred hCCCCE---EEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------HHHHHHHHHHcCCcE
Confidence 0 0000 01112222111111111111 22899999999 66677 5555443 22222221 27899
Q ss_pred EEeecCccccccc----------CEEEEEeCcE
Q 037346 1104 VTIAHRITSVLDS----------AMVLLLNHGL 1126 (1156)
Q Consensus 1104 I~IaHrl~ti~~~----------D~I~Vl~~G~ 1126 (1156)
|+|||...+.... -.|..+..|+
T Consensus 252 iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 252 VIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp EEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred EEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 9999986654322 3566666665
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.29 E-value=5.3e-12 Score=135.05 Aligned_cols=148 Identities=17% Similarity=0.076 Sum_probs=95.0
Q ss_pred CccccceE-EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH
Q 037346 374 PTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY 452 (1156)
Q Consensus 374 ~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~ 452 (1156)
+.|+++.. .+++|++++|+||+|||||||++.+++ ++ ++.+.|+..+..+. .++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-------~~~v~~i~~~~~~~---------------~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-------GKKVAYVDTEGGFS---------------PERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-------CSEEEEEESSCCCC---------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-------CCcEEEEECCCCCC---------------HHHH
Confidence 45777665 699999999999999999999999999 22 13455655544221 1222
Q ss_pred HHHHHHhCCch--hhhhCCCCCccccccCCCCCCHH--HHHHHHHHHhhccC-CCeeeeeCCCCCcCHHHH--------H
Q 037346 453 ERVLEACSLKK--DLEVLPFGDQTIIGERGINLSGG--QKQRIQIARPLYQD-ADIFLLDDPFSPVDDHTG--------A 519 (1156)
Q Consensus 453 ~~~~~~~~l~~--~~~~~~~g~~t~v~~~g~~LSgG--qkqRi~lAral~~~-~~illlDep~s~lD~~~~--------~ 519 (1156)
.+..+..++.. ..+.+ . ...+|++ |+|+++.+|++..+ |+++++|||++.+|+... .
T Consensus 63 ~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~ 132 (220)
T 2cvh_A 63 VQMAETRGLNPEEALSRF------I----LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELS 132 (220)
T ss_dssp HHHHHTTTCCHHHHHHHE------E----EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHH
T ss_pred HHHHHhcCCChHHHhhcE------E----EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHH
Confidence 22222222210 01110 0 1123444 46789999999986 999999999999997421 2
Q ss_pred HHHHHHH---hcCCCEEEEEccCCCc-------------cc-cCCEEEEEeCC
Q 037346 520 HLFKFCW---VSSSKTVIYATHQVEF-------------LP-AADLILVIKDG 555 (1156)
Q Consensus 520 ~i~~~~~---~~~~~tvi~vtH~~~~-------------~~-~~d~i~~l~~G 555 (1156)
.+++.+. ...+.|+|+++|.... +. .||.|++|++.
T Consensus 133 ~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 133 RQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2333222 2347899999998652 33 59999999754
No 204
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.28 E-value=2.1e-11 Score=139.56 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEe
Q 037346 1063 GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~ 1123 (1156)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|+|+.+....||+|++|+
T Consensus 266 a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp HHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 578889999999999999999999999999998764 4679999999988888899999986
No 205
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.28 E-value=2.1e-12 Score=139.49 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=94.3
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh---cCeeeccccccccccchhccCC----
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT---RLSIIPQDPTMFEGTTRSNLDP---- 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~---~i~~VpQdp~LF~gTIr~Nl~~---- 1030 (1156)
++++-++|.|++|||||||++.|++...+.+|.+.+.+.+.. .+.+++ .+++.+|+.....-.+.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBTTTEEEEECCC----C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhhCCEEEEeccccccCc
Confidence 456667888999999999999999998888999988776543 344333 4666666532111111111110
Q ss_pred ---CCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCC--EEEEecCCcCC--CHHHHHHHHHHHHHhc--CCc
Q 037346 1031 ---LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSK--VLVLDEATASV--DTATDNQIQQTLRQHF--SDC 1101 (1156)
Q Consensus 1031 ---~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~--ILiLDEaTS~L--D~~te~~I~~~l~~~~--~~~ 1101 (1156)
....+-+++.+.+. +.+...+|+ +||+||||+.+ |+.....+.+.|++.. .++
T Consensus 98 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 159 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVI------------------EAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF 159 (235)
T ss_dssp TTBCSSCCHHHHHHHHH------------------HHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE
T ss_pred eeeecCCCHHHHHHHHH------------------HHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC
Confidence 00112122211111 111125899 99999999888 9988788888877653 488
Q ss_pred eEEEeecCc--------cccc-ccCEEEEEeCcE
Q 037346 1102 TVVTIAHRI--------TSVL-DSAMVLLLNHGL 1126 (1156)
Q Consensus 1102 TvI~IaHrl--------~ti~-~~D~I~Vl~~G~ 1126 (1156)
|+|+++|.. ..+. .||+|++|++.+
T Consensus 160 ~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 160 TIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred eEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 999999998 3354 499999998653
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=151.38 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=83.3
Q ss_pred eEEEEEEEEEEcCCC-------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc
Q 037346 947 EVNIRHLQVRYAPNL-------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~-------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L 1019 (1156)
.|.++||+++|+... .++|.|+||||||||++.|+|...|..| .+|.++...+ ...++.+++++|++.+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGV 86 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------
T ss_pred cEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCc
Confidence 355555555553211 1378899999999999999999876555 2444332211 1124668999999877
Q ss_pred c-cccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCC---EEEEecCC-cCCCHHHHHHHHHHH
Q 037346 1020 F-EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSK---VLVLDEAT-ASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1020 F-~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~---ILiLDEaT-S~LD~~te~~I~~~l 1094 (1156)
+ .-||.||+.++.....++.|+.+... +.+.....-.+-...|||++++|+ +|++|||| +++|+.... +.+.|
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~-i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~-~lk~L 164 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDY-IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRL 164 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHH-HHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHH-HHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHH-HHHHH
Confidence 6 56999998765433322223222100 001111110111234899999999 99999999 699987642 33333
Q ss_pred HHhcCCceEEEeecCcccc
Q 037346 1095 RQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1095 ~~~~~~~TvI~IaHrl~ti 1113 (1156)
..+.++|.|.|+.+++
T Consensus 165 ---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 165 ---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp ---TTTSEEEEEEESTTSS
T ss_pred ---hccCcEEEEEEcccCc
Confidence 3578999999998765
No 207
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.27 E-value=1.8e-13 Score=156.18 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=109.7
Q ss_pred EEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC-------ChHHHhhcCeeeccccccccccchhc
Q 037346 955 VRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI-------GLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 955 f~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-------~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
|...+++..+|.|+||||||||+++|.|+.+|+.|.|.+.|.+.+++ ....+++.+.+++|..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~---------- 135 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD---------- 135 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT----------
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC----------
Confidence 44445666678899999999999999999999999999999753211 1122333344444321
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHH--------------HhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEV--------------RKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i--------------~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
....+.+..++..+.+.++. .++.+|+...+-| +.+|++ |+++|+.....+.+.
T Consensus 136 -----~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la-l~~p~~------t~Gldp~~~~~l~~l 203 (347)
T 2obl_A 136 -----RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA-SGEPDV------RGGFPPSVFSSLPKL 203 (347)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH-TTCCCC------BTTBCHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH-cCCCCc------ccCCCHHHHHHHHHH
Confidence 11123444444433333332 2222222111234 577777 999999999999999
Q ss_pred HHHhc---CCc-----eEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1094 LRQHF---SDC-----TVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1094 l~~~~---~~~-----TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+++.. +|. ||++++|+++ -.-||++++|.+|+|+..|+++++..
T Consensus 204 ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 204 LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 98875 366 9999999998 55699999999999999999888753
No 208
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.27 E-value=9.9e-13 Score=159.38 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=59.1
Q ss_pred ccccccCC--CEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCc
Q 037346 1063 GRVLLKKS--KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125 (1156)
Q Consensus 1063 ARALLr~~--~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G 1125 (1156)
||||+.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||+|+||++|
T Consensus 409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 78999999 9999999999999999999999999887789999999999999999999999554
No 209
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.25 E-value=1.5e-13 Score=146.07 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=86.2
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhc----CC--CCCHHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILF----GK--EMDRERYERVL 456 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~----~~--~~~~~~~~~~~ 456 (1156)
.++|++++|+||||||||||+++|+|.++|. | ...++++|+...+..+..+|+.. +. .++.....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLC 92 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999875 4 25788899888877777777631 11 13433333333
Q ss_pred HHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH-HhhccCCCeeeeeCCC
Q 037346 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA-RPLYQDADIFLLDDPF 510 (1156)
Q Consensus 457 ~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA-ral~~~~~illlDep~ 510 (1156)
...... ....+.+.+++..+||||+||+++| |+++.++.++++|||.
T Consensus 93 ~~l~~~-------~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 93 HALKHQ-------ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHC-------SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHhcC-------CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 322110 1244566788899999999999998 9999999999999984
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.25 E-value=4.5e-12 Score=137.87 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=92.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhh--cccC-----CCceEEEcCeeCCC-CChHHHhhcCeeeccccccccccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFR--IVES-----TAGHILIDGKDISL-IGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++++-++|.||+|||||||++.|++ ..+| .+|.+++++.+... -.+..+++++++.+|+ +.+|+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~ 94 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDNVA 94 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHTEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhCeE
Confidence 3556668889999999999999999 5554 67899999986321 2244566778888875 456765
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHH-------HHHH--HHH---HHHHh
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTA-------TDNQ--IQQ---TLRQH 1097 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~-------te~~--I~~---~l~~~ 1097 (1156)
.....+.++..+.++.+ .+.+. -.+|++|++||+|+.+|++ +++. +.+ .|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 95 YARAFNTDHQTQLLYQA--SAMMV-------------ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp EEECCSHHHHHHHHHHH--HHHHH-------------HSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH--HHHHh-------------cCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 44444545544443221 11111 1579999999999999986 4322 333 33332
Q ss_pred c--CCceEEEeecCccccc--------------------ccCEEEEEeCc
Q 037346 1098 F--SDCTVVTIAHRITSVL--------------------DSAMVLLLNHG 1125 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti~--------------------~~D~I~Vl~~G 1125 (1156)
. .++|||+++|-..... .||.|++|++|
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 3899999999654322 58999999875
No 211
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.24 E-value=1.1e-12 Score=163.72 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=92.8
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-CCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-cc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gT 1023 (1156)
+...++|++|. ++.++|.|||||||||+++++.|+.. ++.|.+. + ..+..+++++| +|. -+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SSEEEECCCSE---EEEECC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hhccceeeHHH---hhccCC
Confidence 34578899987 66678999999999999999999974 6788752 1 12567899988 565 48
Q ss_pred chhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecC---CcCCCHHHH-HHHHHHHHHh
Q 037346 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEA---TASVDTATD-NQIQQTLRQH 1097 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEa---TS~LD~~te-~~I~~~l~~~ 1097 (1156)
+.+|+..+...-..+.. ..++++ +.+|+++||||| ||++|..+. ..|.+.|.+
T Consensus 628 ~~d~l~~g~S~~~~e~~--------------------~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~- 686 (765)
T 1ewq_A 628 ASDDLAGGKSTFMVEME--------------------EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE- 686 (765)
T ss_dssp C------CCSHHHHHHH--------------------HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcccHHHHHHH--------------------HHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-
Confidence 88988643210011111 124555 889999999999 999999886 478888877
Q ss_pred cCCceEEEeecCccccccc
Q 037346 1098 FSDCTVVTIAHRITSVLDS 1116 (1156)
Q Consensus 1098 ~~~~TvI~IaHrl~ti~~~ 1116 (1156)
.++|+|++||+.+...-+
T Consensus 687 -~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 687 -RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -HTCEEEEECCCHHHHTCC
T ss_pred -CCCEEEEEeCCHHHHHhh
Confidence 589999999998765443
No 212
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=8.8e-12 Score=143.85 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=80.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh-cccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFR-IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~ 1041 (1156)
+.|.||+|+||||++++|.| ++.|..|.|.++|.++..... -+..+++++|++++.-.. .+. .....+.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~ 111 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDM-GNNDRIVIQE 111 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhc-CCcchHHHHH
Confidence 67889999999999999999 899999999999988765333 267899999998753110 011 1111223444
Q ss_pred HHHH----cCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1042 ALDK----CQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1042 al~~----~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.++. .++.+++ .++ .+..+|+|+|||||++ ||.++...+.+.+++..+++++|++||+++.+
T Consensus 112 ~i~~~~~~~~~~~~~-~ls--------~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 112 LLKEVAQMEQVDFQD-SKD--------GLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp HHHHHTTTTC---------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred HHHHHHHhccccccc-ccc--------ccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 3333 3333332 111 1678999999999999 99999999999999877788999999998654
No 213
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.20 E-value=3.6e-12 Score=139.08 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=93.4
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
+...++||||.-+++.-++|.|++|||||||+++|.+++ |.+.+| ..++.+++|+|+++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345799999999888878899999999999999999987 655554 367889999999744345777
Q ss_pred hccCC------C-C--CCCHHHHHHHHHHcCCChHHHhhcCCcccc------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDP------L-E--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~------~-~--~~~deei~~al~~~~l~~~i~~lp~gl~s~------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+|+.. + + ....+++.+.|+.. .+.....+..|+.+ -++++.+|+++|||||....|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~----- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE----- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH-----
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH-----
Confidence 77531 1 1 12234455665542 11111112223222 25778899999999988777754
Q ss_pred HHHHHHhcCCceEEEeecCcccc-cc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1091 QQTLRQHFSDCTVVTIAHRITSV-LD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1091 ~~~l~~~~~~~TvI~IaHrl~ti-~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+. .+.|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 150 ---l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 150 ---IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp ---HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ---HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2333 388999999974333 22 2223 6675 5666653
No 214
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.19 E-value=2.9e-13 Score=136.64 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=67.9
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeE--------EEEecCCcC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AYVAQSPWI 432 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~--------~~v~Q~~~~ 432 (1156)
+|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|.+ |++|+|.++|.. .|++|++.+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 35566664 346899999999999999999999999999999999999 999999988731 268999888
Q ss_pred CCccHHHHhh-cC
Q 037346 433 QSGKIEENIL-FG 444 (1156)
Q Consensus 433 ~~~ti~eni~-~~ 444 (1156)
+..|+.||+. +|
T Consensus 87 ~~ltv~e~l~~~g 99 (158)
T 1htw_A 87 YRLADPEELEFMG 99 (158)
T ss_dssp TTCSCTTHHHHST
T ss_pred ccCCcHHHHHHcC
Confidence 8779999985 45
No 215
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.19 E-value=9.9e-12 Score=132.94 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=85.2
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhc---CeeeccccccccccchhccCCCCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR---LSIIPQDPTMFEGTTRSNLDPLEEH 1034 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~---i~~VpQdp~LF~gTIr~Nl~~~~~~ 1034 (1156)
++++-.+|.|++|||||||++.+++ .+..+.+++++.+ ..+.+.+++. .++-++ .+.+|+.+....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 86 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMAETRGLNPE-------EALSRFILFTPS 86 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHHHTTTCCHH-------HHHHHEEEECCT
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHHHhcCCChH-------HHhhcEEEEecC
Confidence 3455567889999999999999999 5555667777643 2344444432 111111 122232221111
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccC-CCEEEEecCCcCCCHHHH--------HHHHHHHHHhcC--CceE
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKK-SKVLVLDEATASVDTATD--------NQIQQTLRQHFS--DCTV 1103 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~-~~ILiLDEaTS~LD~~te--------~~I~~~l~~~~~--~~Tv 1103 (1156)
+-++..+ .-..+|+++++ |+++|+||||+.+|+..+ ..+.+.|+++.+ ++||
T Consensus 87 ~~~~~~~-----------------~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~v 149 (220)
T 2cvh_A 87 DFKEQRR-----------------VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPV 149 (220)
T ss_dssp TTSHHHH-----------------HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHH-----------------HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1111100 01126778875 999999999999997543 234444555433 8999
Q ss_pred EEeecCcccc--------------cccCEEEEEeCc
Q 037346 1104 VTIAHRITSV--------------LDSAMVLLLNHG 1125 (1156)
Q Consensus 1104 I~IaHrl~ti--------------~~~D~I~Vl~~G 1125 (1156)
|+++|..... ..||+|++|++.
T Consensus 150 i~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 150 IVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp EEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999987632 469999999864
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.18 E-value=2.3e-12 Score=146.33 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=76.3
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CCCcEEEEc-C---------eEEEEecCCcCCCc-cHHHHh
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KESGIIRLC-G---------TKAYVAQSPWIQSG-KIEENI 441 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~~G~i~~~-g---------~~~~v~Q~~~~~~~-ti~eni 441 (1156)
.-++++++. .+|++++|+||||||||||+++|+|..+ |..|+|.++ | .+++++|+++++.. +++++-
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357788774 4899999999999999999999999999 999999876 4 47999999987654 899864
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+.+ .+.+...+. ..+.++.+ |.....+....+|| ||+||++||+++.
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 432 233222111 11112211 12222344557899 9999999999864
No 217
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.18 E-value=3.7e-14 Score=148.40 Aligned_cols=161 Identities=11% Similarity=-0.031 Sum_probs=98.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------EEEEecCCcC-CCccHHHHhhcCCCCCHHHHHHHHH
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------KAYVAQSPWI-QSGKIEENILFGKEMDRERYERVLE 457 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------~~~v~Q~~~~-~~~ti~eni~~~~~~~~~~~~~~~~ 457 (1156)
|++++|+||||||||||++.|++ +.+|.+.++|. .++++|.+.. ...++++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 78999999999999999999997 66788988763 2455554422 123666665431 001110
Q ss_pred HhCCchhhhhCCCCCccccccCCCCC--CHHHHHHHHHHH------hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--
Q 037346 458 ACSLKKDLEVLPFGDQTIIGERGINL--SGGQKQRIQIAR------PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-- 527 (1156)
Q Consensus 458 ~~~l~~~~~~~~~g~~t~v~~~g~~L--SgGqkqRi~lAr------al~~~~~illlDep~s~lD~~~~~~i~~~~~~-- 527 (1156)
.+....++.. .+.. .. +....+ |+||+|++.++. +++.+++...+|+ ++|+..... ++.+..
T Consensus 72 -~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 1100001100 0000 00 111234 889988988888 8888998888884 789877666 554433
Q ss_pred cCCCEEEEEccC-CCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 528 SSSKTVIYATHQ-VEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 528 ~~~~tvi~vtH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
..+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 346799999998 888865 99998 99999999987655
No 218
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=4.9e-11 Score=138.28 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHH------HHHHhhccC-CCeeeeeCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEccCCCccccCCEEEE
Q 037346 480 GINLSGGQKQRI------QIARPLYQD-ADIFLLDDPFSPVDDHTGAHLFKFCWVS-SSKTVIYATHQVEFLPAADLILV 551 (1156)
Q Consensus 480 g~~LSgGqkqRi------~lAral~~~-~~illlDep~s~lD~~~~~~i~~~~~~~-~~~tvi~vtH~~~~~~~~d~i~~ 551 (1156)
...||||||||+ ++|||+..+ |+++||||||++||+..+..+.+.+... .+.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 567999999 9999999999999999999998876543 35699999999886567999999
Q ss_pred Ee
Q 037346 552 IK 553 (1156)
Q Consensus 552 l~ 553 (1156)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 219
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.15 E-value=6.9e-12 Score=157.42 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-CCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
...++|+++. +++.-.+|.|||||||||+++++.|+.-+ +.|. .+ +. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS--SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch--hcccceeHHH---HHhhCCH
Confidence 4568999999 77777889999999999999999998532 2231 11 11 1345777776 4443 66
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHH-HHHHHHhc--CCc
Q 037346 1025 RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQI-QQTLRQHF--SDC 1101 (1156)
Q Consensus 1025 r~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I-~~~l~~~~--~~~ 1101 (1156)
.+|+......-..++.+... +...+.+|++|||||||+++|+.....+ .+.++.+. .++
T Consensus 660 ~d~l~~~~stf~~e~~~~~~------------------il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 660 ADDLASGRSTFMVEMTETAN------------------ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ----------CHHHHHHHHH------------------HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhhhhhHHHHHHHH------------------HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 77765321111111111110 1113679999999999888888655443 55555543 389
Q ss_pred eEEEeecCcccccccCEEEEEeCcEEee
Q 037346 1102 TVVTIAHRITSVLDSAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1102 TvI~IaHrl~ti~~~D~I~Vl~~G~IvE 1129 (1156)
|+|++||..+...-||++..+.+|++..
T Consensus 722 ~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 722 LTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp EEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred eEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 9999999998888888877777777654
No 220
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.15 E-value=2.3e-12 Score=136.87 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=89.4
Q ss_pred EEEEEEEEEEcC----------CCCceeeCCCCCCHHHHHHHHhhcc-----cCCCceEEE-------cCeeCC---CCC
Q 037346 948 VNIRHLQVRYAP----------NLPLVLRGRTGSGKSTLIQTLFRIV-----ESTAGHILI-------DGKDIS---LIG 1002 (1156)
Q Consensus 948 I~~~~Vsf~Y~~----------~~~~vL~G~SGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di~---~i~ 1002 (1156)
++++|++|+|+. +..++|.|++|||||||++.|.|.. .|+.|.+.+ ++..+- .+.
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 678888888841 2235677999999999999999998 888888765 233332 211
Q ss_pred --------hHHHhhcCeeeccccccccc-cchhccCCCCCCCHHHHHHHHHHcCCChHH-HhhcCCcc--------cccc
Q 037346 1003 --------LHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEV-RKKKGKLD--------SQGR 1064 (1156)
Q Consensus 1003 --------~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i-~~lp~gl~--------s~AR 1064 (1156)
.+.+|+.++.+.|++..+++ ++..++.......++++.+.++..++...+ .+..+.+. ..+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVR 163 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHH
Confidence 13466667777776544444 444555432222245677777777765432 22222222 2368
Q ss_pred ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1065 ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+++++|+++++|||||++|.+....+.+.|.+..
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999988764
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.14 E-value=3.4e-11 Score=130.83 Aligned_cols=143 Identities=14% Similarity=0.188 Sum_probs=80.0
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhC--CCCC-----CCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILG--GVPK-----ESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~-----~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
-+++|++++|+||||||||||++.|++ ..++ ..|.+++++ +..+ +.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~-------~~~~---------------~~~~~~~ 77 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT-------EGTF---------------RPERLLA 77 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES-------SSCC---------------CHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC-------CCCc---------------CHHHHHH
Confidence 489999999999999999999999999 4555 345555543 2211 1122222
Q ss_pred HHHHhCCchh--hhhCCCCCccccccCCCCCCHHHHH-HHHHHHhhc--cCCCeeeeeCCCCCcCHH-------HH----
Q 037346 455 VLEACSLKKD--LEVLPFGDQTIIGERGINLSGGQKQ-RIQIARPLY--QDADIFLLDDPFSPVDDH-------TG---- 518 (1156)
Q Consensus 455 ~~~~~~l~~~--~~~~~~g~~t~v~~~g~~LSgGqkq-Ri~lAral~--~~~~illlDep~s~lD~~-------~~---- 518 (1156)
..+..+.... ++.+ .+ ....++.+.. .+.-++.++ .+|+++++|||++.+|+. ..
T Consensus 78 ~~~~~g~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~ 148 (243)
T 1n0w_A 78 VAERYGLSGSDVLDNV------AY---ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 148 (243)
T ss_dssp HHHHTTCCHHHHHHTE------EE---EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHH
T ss_pred HHHHcCCCHHHHhhCe------EE---EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHH
Confidence 2222222110 0100 00 0124455433 233333333 589999999999999985 31
Q ss_pred -HHHHHHHHh---cCCCEEEEEccCCCc-------------------cc-cCCEEEEEeCC
Q 037346 519 -AHLFKFCWV---SSSKTVIYATHQVEF-------------------LP-AADLILVIKDG 555 (1156)
Q Consensus 519 -~~i~~~~~~---~~~~tvi~vtH~~~~-------------------~~-~~d~i~~l~~G 555 (1156)
..++..+.. ..|.|||+++|.... +. .||.+++|++|
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 223333322 348999999996542 22 48999999865
No 222
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.13 E-value=2e-12 Score=146.57 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC--------CCCCcEEEEcCeE----------------------------EEE---e
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV--------PKESGIIRLCGTK----------------------------AYV---A 427 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~--------~~~~G~i~~~g~~----------------------------~~v---~ 427 (1156)
++++|+|+||||||||++.|+|.. .|+.|+|.++|.. +++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 7899999887632 234 4
Q ss_pred cCCc-CCCccHHHHhhcCCCCCH-HHH---HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 428 QSPW-IQSGKIEENILFGKEMDR-ERY---ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 428 Q~~~-~~~~ti~eni~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|++. .+..++.||..++.+..- ..+ ...-+...+...+..... ... -+...+|||||+||+..+++++.+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~--~~~-~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDA--VHA-DEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEET--TTH-HHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEH--HHH-HHHHhhchHHHHHHHhCCEEEEECcc
Confidence 6654 356688888877643110 111 111112222211111000 000 01112689999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCC
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVE 541 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~ 541 (1156)
++ ||| +.+.+.+.. ..+.|++++||+..
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 87 999 233333322 35789999999743
No 223
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.09 E-value=1.5e-10 Score=115.13 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=57.3
Q ss_pred ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE--eCcE
Q 037346 1063 GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL--NHGL 1126 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl--~~G~ 1126 (1156)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||++.....||+|++| ++|.
T Consensus 75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence 589999999999999999999999999999999864 478999999999777779999999 4554
No 224
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.09 E-value=2.6e-12 Score=140.31 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHh---CCCCCCCcEEEEcCe---------EEEEecCCcCC-CccHHHHhhc--------
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCIL---GGVPKESGIIRLCGT---------KAYVAQSPWIQ-SGKIEENILF-------- 443 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~---g~~~~~~G~i~~~g~---------~~~v~Q~~~~~-~~ti~eni~~-------- 443 (1156)
++++++|+||||||||||++.|+ |...++.|++.++|. +.+++|++.++ ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 999999998877641 23455666544 4588888753
Q ss_pred -----CCCCCHHHHHHHHHHhCCc--hhhhhCCCC-CccccccCCCCCCHHHHHHHHHHHhh-ccCCCeeeee----CCC
Q 037346 444 -----GKEMDRERYERVLEACSLK--KDLEVLPFG-DQTIIGERGINLSGGQKQRIQIARPL-YQDADIFLLD----DPF 510 (1156)
Q Consensus 444 -----~~~~~~~~~~~~~~~~~l~--~~~~~~~~g-~~t~v~~~g~~LSgGqkqRi~lAral-~~~~~illlD----ep~ 510 (1156)
|.+...++.+...+..... -.++.-+.. .+...+++...||| |+ ||+ +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 1111222212111101110 000000000 01112344567999 66 888 9999999999 999
Q ss_pred CCcCHHHHHHHHHHH
Q 037346 511 SPVDDHTGAHLFKFC 525 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~ 525 (1156)
+++|..+.+.+.+.+
T Consensus 179 ~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 179 VQQEDDKPEAVAARL 193 (246)
T ss_dssp BCCGGGSHHHHHHHH
T ss_pred ccCCCCcHHHHHHHH
Confidence 999998877776554
No 225
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.08 E-value=6.4e-13 Score=154.97 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=80.1
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------------EEEE---------ec
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------------KAYV---------AQ 428 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------------~~~v---------~Q 428 (1156)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+. +++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 3799999999999999999999999999999999887542 1233 37
Q ss_pred CCcCC--C-----ccHHHHhhcCC----------CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 429 SPWIQ--S-----GKIEENILFGK----------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 429 ~~~~~--~-----~ti~eni~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|.+. . .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 77642 1 37888876521 11112222234445554321 234799999999
Q ss_pred HHHHhhccCCCeeee
Q 037346 492 QIARPLYQDADIFLL 506 (1156)
Q Consensus 492 ~lAral~~~~~illl 506 (1156)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998653
No 226
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.07 E-value=5.7e-11 Score=139.04 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=95.5
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCcCC-Cc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPWIQ-SG 435 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~~~-~~ 435 (1156)
-+++||++++|++++|+|+||||||||++.|+|.+.+++|+|.++| .++|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 3578999999999999999999999999999999999999999864 157899987654 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccC--CCCCCHHHHHHHHHHHhhcc-CC-CeeeeeCCCC
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER--GINLSGGQKQRIQIARPLYQ-DA-DIFLLDDPFS 511 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~--g~~LSgGqkqRi~lAral~~-~~-~illlDep~s 511 (1156)
++++|+.++.. -+.+..+- || .|.. -.+|-.--+|++.++|++.. .| .++|..|+++
T Consensus 363 tV~e~l~~a~~------------~~~DvVLI------DT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIA------DT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEE------CC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHh------------cCCCEEEE------eC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 89999876421 00000000 00 0110 01122233588999998754 45 4676777888
Q ss_pred CcCHHHHHHHHHHHHhcCCCEEEEEcc
Q 037346 512 PVDDHTGAHLFKFCWVSSSKTVIYATH 538 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~~~~~tvi~vtH 538 (1156)
+.|.....+-|. ..-+.|.|++||
T Consensus 424 Gq~al~~ak~f~---~~~~itgvIlTK 447 (503)
T 2yhs_A 424 GQNAVSQAKLFH---EAVGLTGITLTK 447 (503)
T ss_dssp THHHHHHHHHHH---HHTCCSEEEEEC
T ss_pred cHHHHHHHHHHH---hhcCCCEEEEEc
Confidence 877654322222 234788999999
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=2.1e-12 Score=147.25 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=102.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------- 421 (1156)
++++|+++.|. ...+|+++|+++++|++++|+|+||||||||++.|+|.+.|++|+|.+.|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556666664 24689999999999999999999999999999999999999999998765
Q ss_pred -eEEEEecCCcCCC----------c---cHHHHhh-c---C----------CCCCHHHHHHHHHHhCCc---------hh
Q 037346 422 -TKAYVAQSPWIQS----------G---KIEENIL-F---G----------KEMDRERYERVLEACSLK---------KD 464 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~----------~---ti~eni~-~---~----------~~~~~~~~~~~~~~~~l~---------~~ 464 (1156)
+++|++|+|.+|. | +++|.+. + + -...+.. +.+.+.+- ++
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCccc
Confidence 2478888887653 1 2233321 0 1 0001111 11111100 00
Q ss_pred hhhCCCC-----Cc---ccccc-CCCCCCHHHHHHHHHHHhhcc------CCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 465 LEVLPFG-----DQ---TIIGE-RGINLSGGQKQRIQIARPLYQ------DADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 465 ~~~~~~g-----~~---t~v~~-~g~~LSgGqkqRi~lAral~~------~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
++.+..+ +- +.++. ....+|+|++|++..|++++. +|+++. +||+|......+++.+.
T Consensus 184 ~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp ---CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 0000000 00 00110 113579999999999999987 688876 99999998888887664
No 228
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.06 E-value=4.9e-11 Score=132.78 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=90.9
Q ss_pred EcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC-CCCCCC
Q 037346 957 YAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLEEHA 1035 (1156)
Q Consensus 957 Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~-~~~~~~ 1035 (1156)
++++..++|.|++|||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. .+....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHLS 95 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhcC
Confidence 35677778899999999999999999764 56653 3443321 2345566554432 11212211 111233
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCcccc----ccccccCCCEEEEecCCc--CCCHHHH---HHHHHHHHHhc--CCceEE
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQ----GRVLLKKSKVLVLDEATA--SVDTATD---NQIQQTLRQHF--SDCTVV 1104 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~----ARALLr~~~ILiLDEaTS--~LD~~te---~~I~~~l~~~~--~~~TvI 1104 (1156)
+++..++++..++.+.....+..++.+ +|+++++|++|||||||+ ++|..+. ..+.+.|.++. .++|||
T Consensus 96 ~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 96 AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 455556677776655433333333222 688899999999999999 8997544 56666776653 389999
Q ss_pred EeecCcccc
Q 037346 1105 TIAHRITSV 1113 (1156)
Q Consensus 1105 ~IaHrl~ti 1113 (1156)
+|+|.....
T Consensus 176 ~i~H~~~~~ 184 (279)
T 1nlf_A 176 FLHHASKGA 184 (279)
T ss_dssp EEEEC----
T ss_pred EEecCCCcc
Confidence 999987654
No 229
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.05 E-value=6.2e-11 Score=133.09 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=69.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc-ccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI-VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr 1025 (1156)
..+++++|+. +|.|+||+|||||++.|+|. ..|.+| |.++|.++.. +. . ++.+++++|++.++ .-|+.
T Consensus 12 ~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 12 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp ------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEE
T ss_pred EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEecCCCcccCcchh
Confidence 3566777654 78899999999999999998 888999 9999988754 22 1 46689999987654 45888
Q ss_pred hccCCCCCCCH-H---HHHHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcC-CCHHHHHHHHHHHHHh
Q 037346 1026 SNLDPLEEHAD-E---QIWEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATAS-VDTATDNQIQQTLRQH 1097 (1156)
Q Consensus 1026 ~Nl~~~~~~~d-e---ei~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~-LD~~te~~I~~~l~~~ 1097 (1156)
|+...+..... + ++.+.+.. ..+.++..+.+|.- ..|||+. +|++||||++ ||+... +.+++.
T Consensus 82 Dt~g~~~~~~~~e~~~~l~~~l~~-~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l 152 (301)
T 2qnr_A 82 DTPGYGDAINCRDCFKTIISYIDE-QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAI 152 (301)
T ss_dssp EEC-----------CTTHHHHHHH-HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHH
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHH-HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHH
Confidence 88765322111 1 12221111 01233444443332 2256654 9999999985 999874 333333
Q ss_pred c--CCceEEEeecCccc
Q 037346 1098 F--SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~t 1112 (1156)
. .+.++|+..|++.+
T Consensus 153 ~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 153 HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp TTTSCEEEEECCGGGSC
T ss_pred HhcCCEEEEEEeCCCCC
Confidence 2 25678888899854
No 230
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.05 E-value=9e-12 Score=141.21 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=96.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc--------cCCCceEEEcCeeCCCCC---------------hHHHhhcCeee---ccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV--------ESTAGHILIDGKDISLIG---------------LHDLRTRLSII---PQD 1016 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~i~---------------~~~LR~~i~~V---pQd 1016 (1156)
++|.|++|||||||++.|+|+. .|+.|+|.|||.++...+ ..++++.++++ +|+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~ 86 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDK 86 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhc
Confidence 4678999999999999999998 789999999999998764 45788889988 788
Q ss_pred cc-cccccchhccCCCCCCCHHHHHH----------------HHHHcCCChHHHhhc---CCcc---ccccccccCCCEE
Q 037346 1017 PT-MFEGTTRSNLDPLEEHADEQIWE----------------ALDKCQLGDEVRKKK---GKLD---SQGRVLLKKSKVL 1073 (1156)
Q Consensus 1017 p~-LF~gTIr~Nl~~~~~~~deei~~----------------al~~~~l~~~i~~lp---~gl~---s~ARALLr~~~IL 1073 (1156)
+. .|+.++.||...+.+ ..+.+ ++..+++.++...++ .|.. ..+|+++.+|+++
T Consensus 87 ~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 87 GNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp TSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred CCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence 76 478899999986542 12211 112233333333332 1110 1146777777766
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCc
Q 037346 1074 VLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110 (1156)
Q Consensus 1074 iLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1110 (1156)
||| +.+.+.|++..++.|+++++|+.
T Consensus 164 --de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 164 --GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp --SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred --CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 777 67788888777789999999974
No 231
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.04 E-value=1.1e-10 Score=135.30 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=94.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHH--HhhcccCCC-----ceEEEcCeeC-CCCChHHHhhcCeeeccccccccccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQT--LFRIVESTA-----GHILIDGKDI-SLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++++-+.|.|++|||||||++. +.+..+++. +.|+||+.+. +...+..+++++++.+| ++.+|+.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vleni~ 248 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNNVA 248 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHTEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhcEE
Confidence 3566678889999999999994 456666544 4899999873 22334456678888877 5667776
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHH------------HHHHHHHHHh
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATD------------NQIQQTLRQH 1097 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te------------~~I~~~l~~~ 1097 (1156)
+.....-++..+.++++ .+.+. -.+|+++++||+|+.+|.+.. ..+.+.|+++
T Consensus 249 ~~~~~~~~~~~~~l~~~--~~~l~-------------~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 249 YARAYNADHQLRLLDAA--AQMMS-------------ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp EEECCSHHHHHHHHHHH--HHHHH-------------HSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred EeccCChHHHHHHHHHH--HHHHH-------------hcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHH
Confidence 65555544444433322 01111 136899999999999997643 3455555554
Q ss_pred c--CCceEEEeecCcccc-------------------c-ccCEEEEEeCcE
Q 037346 1098 F--SDCTVVTIAHRITSV-------------------L-DSAMVLLLNHGL 1126 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti-------------------~-~~D~I~Vl~~G~ 1126 (1156)
. .++|||+|+|-..+. . .+|.+++|++|+
T Consensus 314 ake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 314 ADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 389999999983222 2 379999998764
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.04 E-value=6.2e-12 Score=142.17 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh----HHHhhcCe--eecccccccc-ccchhccCCCCC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL----HDLRTRLS--IIPQDPTMFE-GTTRSNLDPLEE 1033 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~LR~~i~--~VpQdp~LF~-gTIr~Nl~~~~~ 1033 (1156)
..++|.|+|||||||+++.|.|++.|++|+|.++|.|+...+. ..++++++ +++|++.++. .|+++|+.....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999987763 33455555 8999887764 478888742100
Q ss_pred -CCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1034 -HADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1034 -~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
..|- + .++.+|....-..+...+...+|++..++++++||.+|. .|... .+ +.+.+. .+.|+|++||--.+
T Consensus 210 ~~~d~-v--liDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--~~-~~~~~~-~~it~iilTKlD~~ 281 (328)
T 3e70_C 210 RGIDV-V--LIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--QA-RQFNEA-VKIDGIILTKLDAD 281 (328)
T ss_dssp HTCSE-E--EEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--HH-HHHHHH-SCCCEEEEECGGGC
T ss_pred ccchh-h--HHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--HH-HHHHHh-cCCCEEEEeCcCCc
Confidence 0000 0 011122211111111122224788888889999996665 33222 11 222221 37899999995433
Q ss_pred cc----------ccCEEEEEeCcEEe
Q 037346 1113 VL----------DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1113 i~----------~~D~I~Vl~~G~Iv 1128 (1156)
.. ..-.|..+..|+-+
T Consensus 282 a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 282 ARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp SCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred cchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 21 12368888888765
No 233
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=2.9e-11 Score=139.97 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=97.7
Q ss_pred EEEEEEEEcCCCC--ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 950 IRHLQVRYAPNLP--LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~--~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
+++|+|..++|.. ++|.||||||||||+++|+|+. ++|.++........|+.+++++|++.++ .-|+.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhh
Confidence 8889999999988 8999999999999999999993 5666666555555677899999999887 459999
Q ss_pred ccCCCCCCCHH------------HHHHHHHHc-CCChHHHhh-------------c--CCccc----cccccccCCCEEE
Q 037346 1027 NLDPLEEHADE------------QIWEALDKC-QLGDEVRKK-------------K--GKLDS----QGRVLLKKSKVLV 1074 (1156)
Q Consensus 1027 Nl~~~~~~~de------------ei~~al~~~-~l~~~i~~l-------------p--~gl~s----~ARALLr~~~ILi 1074 (1156)
|+.++.....+ +..+.+... ++..-+... | .++.. .+|+|-.+++|++
T Consensus 102 ~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~ 181 (427)
T 2qag_B 102 TVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIP 181 (427)
T ss_dssp EECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEE
T ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEE
Confidence 99876654432 222334333 222100000 0 11111 1688888999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHH-h-cCCceEEEeecC
Q 037346 1075 LDEATASVDTATDNQIQQTLRQ-H-FSDCTVVTIAHR 1109 (1156)
Q Consensus 1075 LDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHr 1109 (1156)
+||+|..|.+.--..+.+.|++ + ..|.+++.|+..
T Consensus 182 Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 182 IIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999988766666677765 3 246788888753
No 234
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.02 E-value=1.1e-10 Score=135.90 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=89.8
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC-----------CCCCcEEEEcC-eEEEEecCCcCCCccHHHHhhc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-----------PKESGIIRLCG-TKAYVAQSPWIQSGKIEENILF 443 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~-----------~~~~G~i~~~g-~~~~v~Q~~~~~~~ti~eni~~ 443 (1156)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|+.|.+.+++ ....+.+.|-+..+ ..++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~-- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGK-- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSC--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhh--
Confidence 47899999999999999999999999999999983 34445555543 33334444433221 11111
Q ss_pred CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHH
Q 037346 444 GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523 (1156)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~ 523 (1156)
..... +.+.++.|.. .+..+... .+...+||+||+||+++|++|..+|.++++ +.+|.... ..++
T Consensus 224 --~L~~~-fl~~~era~~--lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 224 --GLGLE-FLRHIARTRV--LLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp --CSCHH-HHHHHTSSSE--EEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred --hhhHH-HHHHHHHHHh--hhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 11122 2222222221 11111000 123357999999999999999999999999 89998655 2333
Q ss_pred HHH---hcCCCEEEEEcc
Q 037346 524 FCW---VSSSKTVIYATH 538 (1156)
Q Consensus 524 ~~~---~~~~~tvi~vtH 538 (1156)
.+. ...+.+++.+|.
T Consensus 289 ~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 289 ALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHhcCCeEEEEEC
Confidence 222 234667776664
No 235
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.01 E-value=2.3e-10 Score=118.35 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=71.7
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
++.+++|+.++|+||+|||||||+++|++.+.+..|.. +.|+ +..+.+ +.+.......
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~~---------~~~~~~--------~~~~~~~~~~ 89 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYFF---------DTKDLI--------FRLKHLMDEG 89 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCEE---------EHHHHH--------HHHHHHHHHT
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEEE---------EHHHHH--------HHHHHHhcCc
Confidence 56778899999999999999999999999987666631 1121 121211 1111111000
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHHh--cCCCEEEEE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCWV--SSSKTVIYA 536 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~~--~~~~tvi~v 536 (1156)
... -+...+.+|++++||||++ ++|+...+.+++.+.. .+++++|++
T Consensus 90 ----------------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 90 ----------------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp ----------------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 1112245999999999995 8999888777665433 368999999
Q ss_pred ccCC
Q 037346 537 THQV 540 (1156)
Q Consensus 537 tH~~ 540 (1156)
||..
T Consensus 140 sn~~ 143 (180)
T 3ec2_A 140 TNYS 143 (180)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9975
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.00 E-value=2.3e-12 Score=154.34 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=100.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EEEEecCCcCC-CccHHHHhh
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KAYVAQSPWIQ-SGKIEENIL 442 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~~v~Q~~~~~-~~ti~eni~ 442 (1156)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|. +++..|.+... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4688999999999999999999999999999999999999999999774 24455544311 126665543
Q ss_pred c-----------CCCCCHHHHHHHHHHhCCc-------------hhh---hhCCCCCccccc-------cCCCCCCHHHH
Q 037346 443 F-----------GKEMDRERYERVLEACSLK-------------KDL---EVLPFGDQTIIG-------ERGINLSGGQK 488 (1156)
Q Consensus 443 ~-----------~~~~~~~~~~~~~~~~~l~-------------~~~---~~~~~g~~t~v~-------~~g~~LSgGqk 488 (1156)
. |.--+.+ ...+++++..- +.+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 2 2222222 33344443210 011 111222211111 22346899999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--EccCCCccc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIY--ATHQVEFLP 544 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~--vtH~~~~~~ 544 (1156)
||.++|.+ | +++||+.....+++.+.. ..++|+++ +||+++.+.
T Consensus 407 ~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 407 LRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp EEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred eEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 99877521 6 999998776544443332 34788875 899987664
No 237
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.99 E-value=7.8e-11 Score=149.05 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=81.0
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-------c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-------M 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-------L 1019 (1156)
....+||+|.-.+++-++|.|||||||||+++++.++.-. .+.-++||++.. +
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--------------------aq~g~~vpa~~~~i~~~d~i 719 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--------------------AQIGSYVPAEEATIGIVDGI 719 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------HHHTCCBSSSEEEEECCSEE
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------hhcCccccchhhhhhHHHHH
Confidence 4567899998877887889999999999999998754321 111223444321 1
Q ss_pred ccc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHH-HHHHHh
Q 037346 1020 FEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQ-QTLRQH 1097 (1156)
Q Consensus 1020 F~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~-~~l~~~ 1097 (1156)
|.. .+.+|+.-....-..++.+.+ ..+|+ +.+|++|||||||+++|+.....|. ..++.+
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~-----------------~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTA-----------------EIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp EEEC----------CCHHHHHHHHH-----------------HHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHH-----------------HHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 211 122222110000000111000 01233 5789999999999999999887776 555544
Q ss_pred c--CCceEEEeecCcccccccCE
Q 037346 1098 F--SDCTVVTIAHRITSVLDSAM 1118 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti~~~D~ 1118 (1156)
. .++|+|++||.++...-+|+
T Consensus 782 ~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 782 IRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp HHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHhcCCeEEEEeCcHHHHHHHhh
Confidence 2 48999999999887765554
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.98 E-value=1.7e-11 Score=133.81 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=89.3
Q ss_pred CCceeeCCCCCCHHHHHHHHh---hcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchhccCC------
Q 037346 961 LPLVLRGRTGSGKSTLIQTLF---RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRSNLDP------ 1030 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~------ 1030 (1156)
..++|.|++|||||||+++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 346788999999999999999 999999999999887642 235566777788776554 367766631
Q ss_pred -------CCCCCHHHHHHHHHHcCCC--------------hHHHhhcCCcccccccc-ccCCCEEEEe----cCCcCCCH
Q 037346 1031 -------LEEHADEQIWEALDKCQLG--------------DEVRKKKGKLDSQGRVL-LKKSKVLVLD----EATASVDT 1084 (1156)
Q Consensus 1031 -------~~~~~deei~~al~~~~l~--------------~~i~~lp~gl~s~ARAL-Lr~~~ILiLD----EaTS~LD~ 1084 (1156)
+.+.+.++.....+..... ......+..+....||+ +.+|++++|| |||+++|.
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 0112233332222112211 11111122121123788 9999999999 99999999
Q ss_pred HHHHHHHHHHHHhc
Q 037346 1085 ATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~ 1098 (1156)
.+.+.+.+.++++.
T Consensus 184 ~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 184 DKPEAVAARLRQYK 197 (246)
T ss_dssp GSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999887753
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=5.2e-10 Score=111.78 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
+|+.++|+||+|||||||+++|.|++.+ +|. ++.|++.......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~~~~------------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASMPLT------------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTSCCC------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHhhHH------------------------------
Confidence 8999999999999999999999999876 451 2334443322110
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCE-EEEEccC
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKT-VIYATHQ 539 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~t-vi~vtH~ 539 (1156)
+++.+|+++++|||++ +|...++.+++.+.. .+|++ +|++||.
T Consensus 79 -------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 -------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp -------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred -------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3456899999999998 555556667665432 34677 7777774
No 240
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.98 E-value=4.6e-10 Score=112.22 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=65.3
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
++..++|.|++|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 5667789999999999999999999987 57 677766543321
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCce-EEEeecC
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCT-VVTIAHR 1109 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~T-vI~IaHr 1109 (1156)
+++.+|++|+||||++ +|...++.+.+.+++.. +++| +|+++|+
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2456899999999998 66555777888877654 3577 7777775
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.96 E-value=4.8e-10 Score=129.93 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=84.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHH--HHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLS--CILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~--~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-|++|++++|+||+|||||||++ ++.+..+++.|. .++.+.|+.-+.. ++.++..+..+..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg--~~~~viyid~E~~---------------~~~~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG--GEGKCLYIDTEGT---------------FRPVRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSSEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC--CCCcEEEEeCCCc---------------cCHHHHHHHHHHc
Confidence 58999999999999999999999 456777775551 0223333332221 2234444444555
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCH-HHHHHHHHHHhhc--cCCCeeeeeCCCCCcCHHHH------------HHHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSG-GQKQRIQIARPLY--QDADIFLLDDPFSPVDDHTG------------AHLF 522 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSg-GqkqRi~lAral~--~~~~illlDep~s~lD~~~~------------~~i~ 522 (1156)
++... ++.+ .+.. ..++ .+.+.+.-++.++ .+|+++++|||++.+|+... ..++
T Consensus 237 gl~~~~vleni------~~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il 307 (400)
T 3lda_A 237 GLDPDDALNNV------AYAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM 307 (400)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred CCChHhHhhcE------EEec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence 54321 1100 0111 1122 3344444444433 47999999999999997532 2333
Q ss_pred HHHHh---cCCCEEEEEccCCC-------------------cccc-CCEEEEEeCC
Q 037346 523 KFCWV---SSSKTVIYATHQVE-------------------FLPA-ADLILVIKDG 555 (1156)
Q Consensus 523 ~~~~~---~~~~tvi~vtH~~~-------------------~~~~-~d~i~~l~~G 555 (1156)
+.+.. ..|.|||+++|... .+.+ +|.++.|+++
T Consensus 308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 33322 45899999999832 1233 7888888765
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.92 E-value=4.9e-10 Score=131.21 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=59.6
Q ss_pred EEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHH--HhhcCeeeccccccc-cccchhc
Q 037346 955 VRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHD--LRTRLSIIPQDPTMF-EGTTRSN 1027 (1156)
Q Consensus 955 f~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~--LR~~i~~VpQdp~LF-~gTIr~N 1027 (1156)
|...++..++|.|+||||||||++.|.|++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|+++|
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 333445556889999999999999999999999999999998876542 222 377899999998755 5588888
Q ss_pred cC
Q 037346 1028 LD 1029 (1156)
Q Consensus 1028 l~ 1029 (1156)
+.
T Consensus 368 l~ 369 (503)
T 2yhs_A 368 IQ 369 (503)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.91 E-value=7.8e-10 Score=124.97 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=86.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------------EEEEecCCcCCC-ccHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------------KAYVAQSPWIQS-GKIEENI 441 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------------~~~v~Q~~~~~~-~ti~eni 441 (1156)
..++|++++|+|||||||||+++.|+|.++|++|+|.+.|. +.+++|++.++. .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999998763 348888876654 4889998
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHH
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i 521 (1156)
.++.. ..... -.++. + |... .-..=.++.-.++|++..++++++||.++. .|.....
T Consensus 205 ~~~~~----------~~~d~-vliDt-a-------G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~-- 261 (328)
T 3e70_C 205 QHAKA----------RGIDV-VLIDT-A-------GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQA-- 261 (328)
T ss_dssp HHHHH----------HTCSE-EEEEE-C-------CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHH--
T ss_pred HHHHh----------ccchh-hHHhh-c-------cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHH--
Confidence 65420 00000 00110 0 1000 000112233348999998888888885554 3443322
Q ss_pred HHHHHhcCCCEEEEEccC
Q 037346 522 FKFCWVSSSKTVIYATHQ 539 (1156)
Q Consensus 522 ~~~~~~~~~~tvi~vtH~ 539 (1156)
+......+.|.|++||-
T Consensus 262 -~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 262 -RQFNEAVKIDGIILTKL 278 (328)
T ss_dssp -HHHHHHSCCCEEEEECG
T ss_pred -HHHHHhcCCCEEEEeCc
Confidence 22222357899999994
No 244
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=2.1e-09 Score=123.79 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=73.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC-CCCCCCcEEEEcCe-----------EEEEecCCcCC-CccHHHHhhcCCCCCHHHHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCILG-GVPKESGIIRLCGT-----------KAYVAQSPWIQ-SGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g-~~~~~~G~i~~~g~-----------~~~v~Q~~~~~-~~ti~eni~~~~~~~~~~~~~ 454 (1156)
.+.|+||+|+||||++++|+| ++.|..|.+.++|. +++++|.+++. +.+- .+ ..+....++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MG-NNDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cC-CcchHHHHH
Confidence 389999999999999999999 78899999888763 45666665431 1110 01 011112334
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEE
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTV 533 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tv 533 (1156)
.++.+.....+. ..+ +||| +..+|+++++|||++ ||+.....+.+.+.. ..+.++
T Consensus 112 ~i~~~~~~~~~~-------~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 112 LLKEVAQMEQVD-------FQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp HHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEE
T ss_pred HHHHHHHhcccc-------ccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEE
Confidence 443332111110 000 4666 778999999999999 999998888776544 356789
Q ss_pred EEEccCCCcc
Q 037346 534 IYATHQVEFL 543 (1156)
Q Consensus 534 i~vtH~~~~~ 543 (1156)
|++||+++.+
T Consensus 168 Il~t~~~~~l 177 (354)
T 1sxj_E 168 IMVCDSMSPI 177 (354)
T ss_dssp EEEESCSCSS
T ss_pred EEEeCCHHHH
Confidence 9999998754
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.88 E-value=2.1e-10 Score=128.88 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=74.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCe-------------EEEEecCCcCC------CccHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGT-------------KAYVAQSPWIQ------SGKIEE 439 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~-------------~~~v~Q~~~~~------~~ti~e 439 (1156)
++.+|++++++||||||||||+++|+ ..+|..|+|.+ +|+ ++|++|+|.+. ..|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 652 48999999653 4578 8
Q ss_pred Hh--hcCC------------C--CCHHHHHHHHHHhCCch-hhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 440 NI--LFGK------------E--MDRERYERVLEACSLKK-DLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 440 ni--~~~~------------~--~~~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
|+ .|+. . ....+.+++++..+|.+ ..+.. ...|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----------HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 88 5541 1 12346777888888865 33332 2479998899999987
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.84 E-value=1.7e-11 Score=135.78 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=88.1
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCC-cCC-CccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSP-WIQ-SGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~-~~~-~~ti~ 438 (1156)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.+.++|. +++++|.+ ... .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999876 78888762 24555543 222 22455
Q ss_pred HHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-------
Q 037346 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS------- 511 (1156)
Q Consensus 439 eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s------- 511 (1156)
|||......... .. .-... ..+.+....|||||+||+.+++|+..+|+++ |+|+.
T Consensus 110 Deid~~~~~r~~--~~---~~~~~-----------~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSD--RE---TGASV-----------RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CT-----------THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCC--Cc---chHHH-----------HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 555432211000 00 00010 1112223479999999999999999999975 99864
Q ss_pred -----CcCHHHHHHHHHHHH
Q 037346 512 -----PVDDHTGAHLFKFCW 526 (1156)
Q Consensus 512 -----~lD~~~~~~i~~~~~ 526 (1156)
.-|...+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 347778888877653
No 247
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.84 E-value=1.1e-10 Score=121.69 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=92.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhccCCC-------C-C
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSNLDPL-------E-E 1033 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~Nl~~~-------~-~ 1033 (1156)
++|.|++|||||||++.|.+ |.+|.+.+||.++... ...++++|.+..+ ..|+++|+... + .
T Consensus 5 i~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVNFLLAQND 75 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 57889999999999999987 6789999998765432 2467888876433 34677765310 0 0
Q ss_pred ------CCHHHHHHHHHHcCCChHHHhhcCC-cccccc------ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-C
Q 037346 1034 ------HADEQIWEALDKCQLGDEVRKKKGK-LDSQGR------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-S 1099 (1156)
Q Consensus 1034 ------~~deei~~al~~~~l~~~i~~lp~g-l~s~AR------ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~ 1099 (1156)
.........- +.+.+...+ --..+. +++++++...+|+ ++|++..+. .+.+++.. .
T Consensus 76 ~ild~~~~~~~~~~~~------~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~ 145 (189)
T 2bdt_A 76 VVLDYIAFPDEAEALA------QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGID 145 (189)
T ss_dssp EEEESCCCHHHHHHHH------HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCC
T ss_pred EEEeeccCHHHHHHHH------HHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCC
Confidence 0111110000 000000000 001133 6777777777784 789887766 67776654 3
Q ss_pred CceEEEeecC-cccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1100 DCTVVTIAHR-ITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1100 ~~TvI~IaHr-l~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 146 ~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 146 ERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp TTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred ccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 5799999999 888765 99998 999999999987764
No 248
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.83 E-value=1.5e-09 Score=112.28 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQ 1038 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~dee 1038 (1156)
+..+.|.||+|+|||||++++.+.+.|.+|. +.+ ++..++ -++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------~~~~~~-----------------------------~~~ 81 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------FDTKDL-----------------------------IFR 81 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------EEHHHH-----------------------------HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------EEHHHH-----------------------------HHH
Confidence 3456788999999999999999999877663 111 001110 011
Q ss_pred HHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhc-CCceEEEeecCccc
Q 037346 1039 IWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHF-SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1039 i~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t 1112 (1156)
+......-... .....+.+|++||||||++ ++|+.....+.+.+.+.. +++|+|++||....
T Consensus 82 ~~~~~~~~~~~------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 82 LKHLMDEGKDT------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHTCCS------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHhcCchHH------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 22222211111 1223355899999999996 899999999998887765 68899999998643
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.82 E-value=5e-11 Score=134.48 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEe-------------------eCCeEEEEEcCCCCChHHHHHHHhCCCC--CCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKV-------------------FHGMRVAVCGTVGSGKSSCLSCILGGVP--KES 414 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKSTll~~i~g~~~--~~~ 414 (1156)
..|+++|+++.|. ++++++++.+ ++|++++|+||||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4588999999994 5899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---cC
Q 037346 415 GIIRL---CG 421 (1156)
Q Consensus 415 G~i~~---~g 421 (1156)
|+|.+ +|
T Consensus 111 G~i~vi~~d~ 120 (308)
T 1sq5_A 111 RRVELITTDG 120 (308)
T ss_dssp CCEEEEEGGG
T ss_pred CeEEEEecCC
Confidence 99988 76
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.81 E-value=1.1e-10 Score=129.93 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC-----------
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL----------- 1031 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~----------- 1031 (1156)
++|.|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|++++++|+...
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g 97 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRG 97 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchhhhcc
Confidence 5788999999999999999999864 2 0 1 4556667999999999999997321
Q ss_pred CC--CCHHHHHHHHHHcCCC------hHH------HhhcCCccc-----cccccccCCCEEEEecCCcCCCHHH
Q 037346 1032 EE--HADEQIWEALDKCQLG------DEV------RKKKGKLDS-----QGRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1032 ~~--~~deei~~al~~~~l~------~~i------~~lp~gl~s-----~ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
.+ +..+.+.+.++...-. +.+ ..+.+|-.. .+|++ +|+|||+||+|+++|+++
T Consensus 98 ~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 98 LPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp STTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11 2234444444443221 000 000001011 13666 899999999999999865
No 251
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.78 E-value=7.1e-09 Score=105.79 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=57.7
Q ss_pred ccccc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE--eCcE
Q 037346 1063 GRVLL----KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL--NHGL 1126 (1156)
Q Consensus 1063 ARALL----r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl--~~G~ 1126 (1156)
||+++ ++|+++||||||++||+.+.+.+.+.|++..++.|+|+|+|+..++..||+|+++ ++|.
T Consensus 76 a~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 76 AFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred HHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence 78885 5679999999999999999999999999988889999999999999999999855 5664
No 252
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=7e-11 Score=136.17 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=104.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhC------------CCCCCCcEEEEcC-----------------eEEEEecCCcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILG------------GVPKESGIIRLCG-----------------TKAYVAQSPWI 432 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g------------~~~~~~G~i~~~g-----------------~~~~v~Q~~~~ 432 (1156)
++++|..++|+|+||+|||||+++|+| ...|+.|.+.++| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 5678999999987 23577777766
Q ss_pred CCc-cHHHHhhcCCCCCHHHHHHHHHHhC-CchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC--CeeeeeC
Q 037346 433 QSG-KIEENILFGKEMDRERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA--DIFLLDD 508 (1156)
Q Consensus 433 ~~~-ti~eni~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~--~illlDe 508 (1156)
..+ +..|++ . ..+...++.+. +-..++... ......+||+. +| |+.++||
T Consensus 96 ~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhchh
Confidence 543 333322 1 11222222222 111111111 12223355542 89 9999999
Q ss_pred CCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEE-EEeCC-eEEEccChH
Q 037346 509 PFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLIL-VIKDG-KITQAGKYS 564 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~-~l~~G-~i~~~g~~~ 564 (1156)
|++.+|+...++.++.+.. ..|+|++ +|..+.+. .||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999988777665433 2356643 99987765 499999 89999 888767654
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.73 E-value=4e-10 Score=113.57 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=58.9
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
+++|+|..++++.++|.|++|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+++|++.+|.-|+.+|+.
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEELE 96 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTHHH
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHHHH
Confidence 34455566667777899999999999999999999 9999999999888531 1112 2799999888778888874
No 254
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=6.8e-09 Score=116.54 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHhhcCeeeccccc----------------cc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLRTRLSIIPQDPT----------------MF 1020 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~----------------LF 1020 (1156)
++..+|.|+||||||||+++|.|+..|++|+|.+ +|.++........++.+++|+|+|. +|
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 3446789999999999999999999999999999 9999877552211246999999984 35
Q ss_pred cc-cchhccCCCC----CCCHHHHHHHHHHcCCC-hHHHhhcC
Q 037346 1021 EG-TTRSNLDPLE----EHADEQIWEALDKCQLG-DEVRKKKG 1057 (1156)
Q Consensus 1021 ~g-TIr~Nl~~~~----~~~deei~~al~~~~l~-~~i~~lp~ 1057 (1156)
.. |+ +|+.+.. ...+..+.++|+.++|. +.....|.
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 43 77 8887532 12346799999999995 55555554
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.70 E-value=1.4e-10 Score=123.19 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC------CCC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL------EEH 1034 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~------~~~ 1034 (1156)
..++|.|+||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+... ..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETF 83 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCCCchh
Confidence 345789999999999999999999975 4 246777777777777776665321 112
Q ss_pred CHHHHHHHHHHcCCChHH--------HhhcCCcc---ccc-cccccCCCEEEEecCC-----------cCCCHHHHHHHH
Q 037346 1035 ADEQIWEALDKCQLGDEV--------RKKKGKLD---SQG-RVLLKKSKVLVLDEAT-----------ASVDTATDNQIQ 1091 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i--------~~lp~gl~---s~A-RALLr~~~ILiLDEaT-----------S~LD~~te~~I~ 1091 (1156)
..+.+.+.+......+.+ ...+.|.. ..| |+++.++.++++|||. ..+|...+..++
T Consensus 84 ~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~ 163 (208)
T 3c8u_A 84 DFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEA 163 (208)
T ss_dssp CHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHH
Confidence 233333333322111111 00111100 114 7778888888888874 346766776666
Q ss_pred HHHHHhc-CCceEEEeecCcc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ 1111 (1156)
+.+++.. .+.|.-.+.||..
T Consensus 164 R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 164 RLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 6666543 2555555555543
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.69 E-value=6.4e-11 Score=127.94 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHh-hcc------------cCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLF-RIV------------ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
++|||.-+++..++|.||||||||||+++|. +++ +|..|.+ +|++....+...++.. +.++.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~~~ 92 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSNGE 92 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHTTC
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhcCc
Confidence 5678888888888999999999999999999 998 4445543 4433333333333321 12333
Q ss_pred ccccccchhccCCCCCCCHHHHHHHHHHcCC---C---hHHHhhcCCc-cccccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1018 TMFEGTTRSNLDPLEEHADEQIWEALDKCQL---G---DEVRKKKGKL-DSQGRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1018 ~LF~gTIr~Nl~~~~~~~deei~~al~~~~l---~---~~i~~lp~gl-~s~ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+++.+++..|+. +. ..+++.++++.... + .....+...+ +.....++..|+..++||.+++.|..+++.+
T Consensus 93 ~~~~~~~~~~~~-~~--~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i 169 (231)
T 3lnc_A 93 IIEHAEVFGNFY-GV--PRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVV 169 (231)
T ss_dssp EEEEEEETTEEE-EE--ECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC------------
T ss_pred eehhhhhccccC-CC--CHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHH
Confidence 333444444441 11 12334455544221 0 0011111222 1223455778889999999999999999888
Q ss_pred HHHHHHh
Q 037346 1091 QQTLRQH 1097 (1156)
Q Consensus 1091 ~~~l~~~ 1097 (1156)
++.|++.
T Consensus 170 ~~rl~~~ 176 (231)
T 3lnc_A 170 EARLKGA 176 (231)
T ss_dssp --CHHHH
T ss_pred HHHHHHH
Confidence 8777643
No 257
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.68 E-value=2.1e-09 Score=115.49 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc---cCCCceEEE--------cCeeCCC-CChHHHhhcCeeecccc------cccccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV---ESTAGHILI--------DGKDISL-IGLHDLRTRLSIIPQDP------TMFEGT 1023 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-i~~~~LR~~i~~VpQdp------~LF~gT 1023 (1156)
.++|.|++||||||++++|.+.+ .++.|.|.. +|.++.+ ....++++++++++|++ .++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGED 86 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCee
Confidence 36789999999999999999887 788999988 7888763 56778999999999987 455556
Q ss_pred chhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc--------------ccccccccCCCEEEEecCCc
Q 037346 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--------------SQGRVLLKKSKVLVLDEATA 1080 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~--------------s~ARALLr~~~ILiLDEaTS 1080 (1156)
+.+++. ++++.+++..+..++.+.....+.. ..+++++++++++|+.+++.
T Consensus 87 v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 87 VSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp CHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCH
T ss_pred CchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCH
Confidence 666653 6789999999999988876432211 11567888999999988864
No 258
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.62 E-value=1.3e-08 Score=113.85 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=69.9
Q ss_pred ceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHH
Q 037346 379 INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEA 458 (1156)
Q Consensus 379 i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~ 458 (1156)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+. ..++ +.....+ ......+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv------~~D~--~r~~a~e-----------qL~~~~~~ 157 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA------AADT--FRAAAIE-----------QLKIWGER 157 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE------EECT--TCHHHHH-----------HHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE------cccc--ccHHHHH-----------HHHHHHHH
Confidence 455677899999999999999999999999998877766553 3332 1111111 12223333
Q ss_pred hCCchhhhhCCCCCccccccCCCCCCHHHHHHH---HHHHhhccCCCeeeeeCCCC
Q 037346 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI---QIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 459 ~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi---~lAral~~~~~illlDep~s 511 (1156)
.++.. ...+|||+.|++ ++++|+..++|++|+|+|..
T Consensus 158 ~gl~~----------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 158 VGATV----------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HTCEE----------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCcE----------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 33321 124689999999 99999999999999999974
No 259
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.61 E-value=4.8e-09 Score=116.97 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=51.7
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCe------------EEEEecCCcCCC-----ccHHHH
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGT------------KAYVAQSPWIQS-----GKIEEN 440 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~------------~~~v~Q~~~~~~-----~ti~en 440 (1156)
+++.+|++++|+||||+|||||+++|+|..+|..|+|.+ +|+ .+|++|+|-+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999987 442 489999997643 477 88
Q ss_pred hh--cCC----------------CCCHHHHHHHHHHhCCch
Q 037346 441 IL--FGK----------------EMDRERYERVLEACSLKK 463 (1156)
Q Consensus 441 i~--~~~----------------~~~~~~~~~~~~~~~l~~ 463 (1156)
+. |.. .......+++++..++.+
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 83 320 112245667777777754
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.61 E-value=3.7e-09 Score=110.26 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++..++|.|++|||||||+++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+++|+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~ 73 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAA 73 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHH
Confidence 3445688999999999999999998 788999999987643221 1345788999765 4567777763
No 261
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=9e-09 Score=115.54 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cC-------------eEEEEecCCcC------------
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CG-------------TKAYVAQSPWI------------ 432 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g-------------~~~~v~Q~~~~------------ 432 (1156)
|++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ +| .++|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999998 55 25899999842
Q ss_pred ----C-CccHHHHhhcCC----CCCHHHHHHHHHHhCCc-hhhhhCC
Q 037346 433 ----Q-SGKIEENILFGK----EMDRERYERVLEACSLK-KDLEVLP 469 (1156)
Q Consensus 433 ----~-~~ti~eni~~~~----~~~~~~~~~~~~~~~l~-~~~~~~~ 469 (1156)
| ..|+ +|+.|+. .....+..++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3 3478 9998853 12345678899999995 4344433
No 262
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.57 E-value=5.3e-08 Score=106.36 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCCceeeCCCCCCHHHHHHHHh---hcccCCCceEE--------EcCeeC-CCCChHHHhhcCeeeccc------cccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLF---RIVESTAGHIL--------IDGKDI-SLIGLHDLRTRLSIIPQD------PTMF 1020 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~i~~~~LR~~i~~VpQd------p~LF 1020 (1156)
++..++|.|++||||||++++|. |++.|++|.|+ .+|.++ .......+++.+++++|+ ..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 34557899999999999999999 99999999999 999998 456788999999999964 4567
Q ss_pred cccchhccCCCCCCCHHHHHHHHHHcCCChHHHh
Q 037346 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRK 1054 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~ 1054 (1156)
..++.+||. .+++..+...+..++.+..
T Consensus 106 ~~~v~~~i~------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 106 GEDVSNEIR------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp TEECTTGGG------SHHHHHHHHHHTTSHHHHH
T ss_pred CeehhHHHH------HHHHHHHHHHhcccHHHHH
Confidence 778888874 3667777777776666654
No 263
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.56 E-value=1.9e-08 Score=118.41 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=45.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~ 422 (1156)
.+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 479999999999 999999999999999999999999999999998874
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.53 E-value=3.2e-08 Score=102.85 Aligned_cols=146 Identities=19% Similarity=0.307 Sum_probs=70.1
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++|.||||||||||+++|.++++ |..|++ +|.+....+.+.+++.+ .|+.+++..++..|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~~ 76 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEece
Confidence 3468899999999999999999998 777875 88877777777666553 46677777777777
Q ss_pred cCCCCCCCHHHHHHHHHHcC---CC---hHHHhhcCCcccccc-ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCC
Q 037346 1028 LDPLEEHADEQIWEALDKCQ---LG---DEVRKKKGKLDSQGR-VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD 1100 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~---l~---~~i~~lp~gl~s~AR-ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~ 1100 (1156)
+ ++. +.+++.++++... ++ .-...+.......++ .++..|+.-.|++-...-+.++++.|++-+.+....
T Consensus 77 ~-yg~--~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 77 Y-YGS--TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAE 153 (186)
T ss_dssp E-EEE--EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred e-ccC--cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6 322 2456666666532 10 001111110000111 334444555566666666777777787777654322
Q ss_pred ceEEEeecCcccc--cccCEEEEEe
Q 037346 1101 CTVVTIAHRITSV--LDSAMVLLLN 1123 (1156)
Q Consensus 1101 ~TvI~IaHrl~ti--~~~D~I~Vl~ 1123 (1156)
++.. ..+|.|+|-|
T Consensus 154 ---------~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 154 ---------LAYAETGAHDKVIVND 169 (186)
T ss_dssp --------------CCCCSEEEECS
T ss_pred ---------HHhhcccCCcEEEECc
Confidence 2222 5688877644
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.51 E-value=5.3e-08 Score=108.65 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=85.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCch
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~ 463 (1156)
++|++++++|+|||||||++..|++.+.+.+|. ++.++.++++ ..+..|++.. ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----~V~lv~~D~~--r~~a~eqL~~-----------~~~~~gl-- 162 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----KIAFITTDTY--RIAAVEQLKT-----------YAELLQA-- 162 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----CEEEEECCCS--STTHHHHHHH-----------HHTTTTC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----EEEEEecCcc--cchHHHHHHH-----------HHHhcCC--
Confidence 478999999999999999999999999877772 5778888873 3344443321 1111111
Q ss_pred hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHH--HHh--cCCCEEEEE--c
Q 037346 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF--CWV--SSSKTVIYA--T 537 (1156)
Q Consensus 464 ~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~--~~~--~~~~tvi~v--t 537 (1156)
|. .. ..+ ++..+.+++++ .++|++|+| |+++|+.....+.+. ++. ....+++++ +
T Consensus 163 -----~~----~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 163 -----PL----EV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp -----CC----CB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred -----Ce----Ee-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 11 00 012 34567788865 899999999 889998655433221 111 122334444 8
Q ss_pred cCCCcccc-CCEEEEEeCCeEEE
Q 037346 538 HQVEFLPA-ADLILVIKDGKITQ 559 (1156)
Q Consensus 538 H~~~~~~~-~d~i~~l~~G~i~~ 559 (1156)
|..+.+.. ++++..++.+.++.
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEE
Confidence 88655543 66555556666654
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.50 E-value=1.1e-07 Score=106.17 Aligned_cols=128 Identities=16% Similarity=0.031 Sum_probs=83.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccH
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKI 437 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti 437 (1156)
+.++++++.|+. .. ++++|+ +|++++++|++||||||++..|+|.+.+..|+|.+.+ .++. ....
T Consensus 77 ~~~~~l~~~~~~---~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~------~d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA------ADTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE------CCSS--CHHH
T ss_pred HHHHHHHHHHCC---CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec------CCcc--cHhH
Confidence 345566666642 11 678887 9999999999999999999999999988777766543 3321 1111
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC-CCCcCHH
Q 037346 438 EENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP-FSPVDDH 516 (1156)
Q Consensus 438 ~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep-~s~lD~~ 516 (1156)
.+ ......+..++. .+|.+ ..-...+.+|.+|+++...++|++|+|+| ++++|..
T Consensus 142 ~~-----------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 142 RE-----------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp HH-----------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred HH-----------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11 111122222221 11111 11234456799999998899999999999 9999987
Q ss_pred HHHHHHHH
Q 037346 517 TGAHLFKF 524 (1156)
Q Consensus 517 ~~~~i~~~ 524 (1156)
....+.+.
T Consensus 198 ~~~~l~~~ 205 (295)
T 1ls1_A 198 LMGELARL 205 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666443
No 267
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.46 E-value=1.4e-07 Score=117.03 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=100.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccC--CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC--CCCCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVES--TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD--PLEEHA 1035 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~--~~~~~~ 1035 (1156)
+..+++.|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||- |+...-
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 345688999999999999999987765 78999 8999999999999999999999999999999999983 543222
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
..++..+++.+ +.-++++| ||.++|.+++..+..+.. .+.++|++.|+++..
T Consensus 88 ~~~~~~~l~~a----------------------d~~ilVvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAA----------------------DAALVAVS-AEAGVQVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHC----------------------SEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhc----------------------CcEEEEEc-CCcccchhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 34555555543 34688888 999999999876655543 377889999998754
No 268
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.45 E-value=6.1e-08 Score=108.68 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHh-hcCeeeccccccc------cccchhcc-
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLR-TRLSIIPQDPTMF------EGTTRSNL- 1028 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR-~~i~~VpQdp~LF------~gTIr~Nl- 1028 (1156)
+...+|.|+||||||||+++|. +.+|.+|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+ +|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~ 241 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REVR 241 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHHH
Confidence 3445788999999999999999 99999999999 9999876542 223 3699999999542 4477 787
Q ss_pred -CC---------CCC--C---CHHHHHHHHHHcCCCh-HHHhhc
Q 037346 1029 -DP---------LEE--H---ADEQIWEALDKCQLGD-EVRKKK 1056 (1156)
Q Consensus 1029 -~~---------~~~--~---~deei~~al~~~~l~~-~i~~lp 1056 (1156)
.+ +.. + ....+.++++..++.+ .....|
T Consensus 242 ~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 285 (302)
T 2yv5_A 242 NYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL 285 (302)
T ss_dssp GGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 22 111 1 2356999999999986 444443
No 269
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.44 E-value=1.3e-09 Score=121.14 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=77.2
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEE
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYV 426 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v 426 (1156)
++++.+.|. ...+++++++++++| ++|+||+|||||||+++|+++.. .|.+.+++. ++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 445555553 235799999999999 99999999999999999999886 688887652 2345
Q ss_pred ecCCc-CC-CccHHHHh-hcCCCCC------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 427 AQSPW-IQ-SGKIEENI-LFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 427 ~Q~~~-~~-~~ti~eni-~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
+|.+. .. .-++.||| .++.... .+...+.+.. -...|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~--------------------ll~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ--------------------LLVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHH--------------------HHHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH--------------------HHHHHhCCCCCCCEEEEEe
Confidence 55542 22 23555666 2322110 0111111111 0125899999999999999
Q ss_pred ccCCCe
Q 037346 498 YQDADI 503 (1156)
Q Consensus 498 ~~~~~i 503 (1156)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999976
No 270
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.44 E-value=3.4e-08 Score=110.22 Aligned_cols=134 Identities=19% Similarity=0.108 Sum_probs=76.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHH
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQI 1039 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei 1039 (1156)
..+++.|++||||||++..|++.+.+.+| +|.+-+.|..... . .+++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~---------------------a-----------~eqL 153 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA---------------------A-----------VEQL 153 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT---------------------H-----------HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch---------------------H-----------HHHH
Confidence 34578899999999999999999998788 4544443332211 1 1222
Q ss_pred HHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc---CCceEEEe--ecCccccc
Q 037346 1040 WEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF---SDCTVVTI--AHRITSVL 1114 (1156)
Q Consensus 1040 ~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~---~~~TvI~I--aHrl~ti~ 1114 (1156)
....+..++.......|..+ ..+-+.+++++++|+| |+++|+..+..+.+..+-.. .+.+++++ +|..+.+.
T Consensus 154 ~~~~~~~gl~~~~~~~~~~l-~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~ 230 (296)
T 2px0_A 154 KTYAELLQAPLEVCYTKEEF-QQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMK 230 (296)
T ss_dssp HHHHTTTTCCCCBCSSHHHH-HHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHH
T ss_pred HHHHHhcCCCeEecCCHHHH-HHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHH
Confidence 22222222211000000000 0111223899999999 99999877766655443221 23456666 88876655
Q ss_pred c-cCEEEEEeCcEEee
Q 037346 1115 D-SAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1115 ~-~D~I~Vl~~G~IvE 1129 (1156)
+ +|++..++.|.|+-
T Consensus 231 ~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 231 HIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHTTTTSSSCCCEEEE
T ss_pred HHHHHHhcCCCCEEEE
Confidence 4 56555566666664
No 271
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.42 E-value=2.4e-07 Score=107.25 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=56.4
Q ss_pred ccccccC-CCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEe
Q 037346 1063 GRVLLKK-SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1063 ARALLr~-~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1123 (1156)
|||+..+ |++|||||||++||+++...+.+.|.+..+++|||+|||+.+....||++++|+
T Consensus 298 a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 298 ANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp HHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 7899999 999999999999999999999999998756679999999998777799999997
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.42 E-value=5e-07 Score=97.88 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCccccc-eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhh-cCCCCCHH
Q 037346 373 NPTLRNI-NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENIL-FGKEMDRE 450 (1156)
Q Consensus 373 ~~~l~~i-~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~-~~~~~~~~ 450 (1156)
.+.|+++ .--+++|++++|+||+|||||||+..++....+.. +.+.|+.-+.. ...+.+... +|... +
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~------~~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG------EPGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT------CCEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC------CeEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 3457766 66799999999999999999999665544332222 23445443321 122333322 22221 1
Q ss_pred HHHHHHHHhCCc--h----hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc--cCCCeeeeeCCCCCc--CHHHHHH
Q 037346 451 RYERVLEACSLK--K----DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY--QDADIFLLDDPFSPV--DDHTGAH 520 (1156)
Q Consensus 451 ~~~~~~~~~~l~--~----~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~--~~~~illlDep~s~l--D~~~~~~ 520 (1156)
.+ ...-.+. + .+...+.. ...+.+. +....+....++.++ .+|+++++|+|++.+ |+....+
T Consensus 79 ~~---~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 79 PY---EEKGMFAMVDAFTAGIGKSKEY-EKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp HH---HHHTSEEEEECSTTTTCC--CC-CSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HH---hhCCcEEEEecchhhccccccc-ccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 11 1111110 0 00000000 0000011 112233333334333 579999999999887 5533333
Q ss_pred HHHHHH---hcCCCEEEEEccCCCc--------c-ccCCEEEEEeC
Q 037346 521 LFKFCW---VSSSKTVIYATHQVEF--------L-PAADLILVIKD 554 (1156)
Q Consensus 521 i~~~~~---~~~~~tvi~vtH~~~~--------~-~~~d~i~~l~~ 554 (1156)
.+..+. ...|.|+|+++|.... + ..||.|+.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 333332 2468899999997654 2 34899999964
No 273
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.42 E-value=1.1e-09 Score=126.17 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhh------------cccCCCceEEEcCeeCCCCChHHH---hhcC---eeeccccccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFR------------IVESTAGHILIDGKDISLIGLHDL---RTRL---SIIPQDPTMF 1020 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~i~~~~L---R~~i---~~VpQdp~LF 1020 (1156)
++..++|.|++|+|||||+++|.| ..+|+.|.|.++|..+..+ ..+ ++.+ ..+.+.|-+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--CEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--HHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--hhhcccccccCcceEEEeccccc
Confidence 455578999999999999999999 6789999999988532211 011 1112 2455666555
Q ss_pred cc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccccc-----CC--CEEEEecCCcCCCHHHHHHHHH
Q 037346 1021 EG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLK-----KS--KVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1021 ~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr-----~~--~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
.+ |..+++. .+....++.+..--++-.. +..+.+.. +| +|+++||+++..|.++-+...+
T Consensus 97 ~~~s~~e~L~-------~~fl~~ir~~d~il~Vvd~-----~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 97 KGASTGVGLG-------NAFLSHVRAVDAIYQVVRA-----FDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLE 164 (392)
T ss_dssp CCCCSSSSSC-------HHHHHHHTTCSEEEEEEEC-----CCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHH-------HHHHHHHHHHHHHHHHHhc-----cccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHH
Confidence 43 3333331 1233333333211011000 01233332 88 9999999999999999888888
Q ss_pred HHHHh-cC-CceEEEeecCcccccc-cCEEE-EEeCc-EEeeecCh
Q 037346 1093 TLRQH-FS-DCTVVTIAHRITSVLD-SAMVL-LLNHG-LIKEYDSP 1133 (1156)
Q Consensus 1093 ~l~~~-~~-~~TvI~IaHrl~ti~~-~D~I~-Vl~~G-~IvE~G~~ 1133 (1156)
.++.. .+ +.|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 165 ~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 165 GLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 88776 44 4554 4999877654 89999 99999 88876664
No 274
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.41 E-value=6.3e-10 Score=127.07 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=60.1
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCC-------eEEEEEcCCCCChHHHHHHHhCCC----CCCCcEEEEc-------
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHG-------MRVAVCGTVGSGKSSCLSCILGGV----PKESGIIRLC------- 420 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g-------~~~~ivG~~GsGKSTll~~i~g~~----~~~~G~i~~~------- 420 (1156)
+.++++..|. ...+++++++.+++| +.++|+||||+|||||+++|+|++ .+.+|.+..+
T Consensus 20 r~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 20 RPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp SCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred CCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3345554553 346899999999877 899999999999999999999998 5666765432
Q ss_pred ------CeEEEEecCCcCCCccHHHHhh
Q 037346 421 ------GTKAYVAQSPWIQSGKIEENIL 442 (1156)
Q Consensus 421 ------g~~~~v~Q~~~~~~~ti~eni~ 442 (1156)
+.+.+++|.+.+.. ++.|++.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 35788988776654 7777764
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.41 E-value=2.8e-08 Score=103.64 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=74.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccC-----------CCceEEEcCeeCCC--CChHHHhhcCeeeccccccccc--cchhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVES-----------TAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFEG--TTRSN 1027 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~g--TIr~N 1027 (1156)
++|.|++|||||||++.+.+...+ .+|+|.++|.++.- ++....++..++++|...-.++ ++.|+
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 111 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDI 111 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEEC
Confidence 578899999999999999998765 58999999976531 2222223334455543211111 23332
Q ss_pred cCCCCCCCHHHH---HHHHHH-cCCChHH----H--hhcC---CccccccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQI---WEALDK-CQLGDEV----R--KKKG---KLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1028 l~~~~~~~deei---~~al~~-~~l~~~i----~--~lp~---gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
.+.. +-+++ .+.++. .....-+ . .+++ .....||++.++|+++++| ||++|.++...+.+.|
T Consensus 112 ~~~~---s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 112 AKHL---TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI 186 (191)
T ss_dssp TCHH---HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence 2210 11111 111221 1110000 0 0111 1112389999999999999 9999999998888887
Q ss_pred HH
Q 037346 1095 RQ 1096 (1156)
Q Consensus 1095 ~~ 1096 (1156)
.+
T Consensus 187 ~~ 188 (191)
T 1oix_A 187 LT 188 (191)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 276
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.41 E-value=3.3e-08 Score=104.20 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=42.0
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEecCCcCCCc-cHHHHhh
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TKAYVAQSPWIQSG-KIEENIL 442 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~~v~Q~~~~~~~-ti~eni~ 442 (1156)
|+++++|++++|+||||||||||+++|+|+++ .+.+++ .++|++|++..+.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999974 344443 24688888765543 5555544
No 277
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.40 E-value=4.7e-08 Score=113.95 Aligned_cols=111 Identities=22% Similarity=0.239 Sum_probs=76.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----CChHHHhhcCeeec---------cccccc--c-----
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----IGLHDLRTRLSIIP---------QDPTMF--E----- 1021 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~LR~~i~~Vp---------Qdp~LF--~----- 1021 (1156)
-+++.|||||||||++++|+|++.|.+|+|.++|.++.. ++...+++.+++.+ |+|.++ .
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~ 248 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL 248 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSH
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCH
Confidence 357889999999999999999999999999999988742 11223455666644 999753 2
Q ss_pred ccchhccCCC----------CCCCHHHHHHHHHHcCCChHHHhhcCCccc-----cccccccCCCEEE
Q 037346 1022 GTTRSNLDPL----------EEHADEQIWEALDKCQLGDEVRKKKGKLDS-----QGRVLLKKSKVLV 1074 (1156)
Q Consensus 1022 gTIr~Nl~~~----------~~~~deei~~al~~~~l~~~i~~lp~gl~s-----~ARALLr~~~ILi 1074 (1156)
-|+++|+... ...+..+..+.|...++.++. ++..|.. .||+|+.+|++..
T Consensus 249 et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~~QRLaraL~~~p~~~~ 314 (418)
T 1p9r_A 249 ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVLAQRLVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEEEEEEEEEECTTTCEEE
T ss_pred HHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHhhhhhcCCCCccC
Confidence 2777776431 111224455678888887653 3333322 2899999999875
No 278
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.39 E-value=2.1e-09 Score=117.79 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|+++.. .|.+.++|. ++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34556666564 235899999999999 99999999999999999999875 678877652 23
Q ss_pred EEecCCc-CC-CccHHHHh-hcCCCCC------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 425 YVAQSPW-IQ-SGKIEENI-LFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 425 ~v~Q~~~-~~-~~ti~eni-~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+++|... .. ..++.||| .++.... .+...+.+. +-...|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~--------------------~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN--------------------QLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH--------------------HHHHHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH--------------------HHHHHHhCCCCCCCEEEE
Confidence 4444432 11 22445555 2221100 001111111 011258899999999999
Q ss_pred hhccCCCeeeeeCCC
Q 037346 496 PLYQDADIFLLDDPF 510 (1156)
Q Consensus 496 al~~~~~illlDep~ 510 (1156)
|+..+|++ +|+++
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999876 45443
No 279
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.38 E-value=8.6e-08 Score=112.92 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=56.6
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH--------HhhcCeeeccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD--------LRTRLSIIPQDPT 1018 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~--------LR~~i~~VpQdp~ 1018 (1156)
.++||+|..++ +.++|.||||||||||+++|.|+++|++|+|.++|.++...+... ++..+.++.+++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETV 95 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEEE
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEehh
Confidence 37899999988 878999999999999999999999999999999999998665432 2233466666653
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.36 E-value=2.7e-08 Score=119.10 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=90.5
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc--cchhcc------CC-
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG--TTRSNL------DP- 1030 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g--TIr~Nl------~~- 1030 (1156)
+..+++.|+|||||||++++|+|+++|++|.|.|+|.+--.++. ++.+++++|++. ..+ |.++++ +|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHHHHHHTTGGGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHHHHHHHhhccCCC
Confidence 44467889999999999999999999999999999876322221 345667777654 222 343333 12
Q ss_pred ---CCCCCHHHHHHHHHHcCCC-------------hHHHhh---cCCcccc---------ccc-ccc----CCCEEEEec
Q 037346 1031 ---LEEHADEQIWEALDKCQLG-------------DEVRKK---KGKLDSQ---------GRV-LLK----KSKVLVLDE 1077 (1156)
Q Consensus 1031 ---~~~~~deei~~al~~~~l~-------------~~i~~l---p~gl~s~---------ARA-LLr----~~~ILiLDE 1077 (1156)
.++..++|...+++.++-. +.+..+ |.++... ... .++ ...++-+=|
T Consensus 336 ~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai~E 415 (511)
T 2oap_1 336 YIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEVNE 415 (511)
T ss_dssp EEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEEEE
T ss_pred eEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEEEE
Confidence 1345555666666655311 112211 1121110 000 111 112333347
Q ss_pred CCcCCCHHHHHHHHHHHHHhc-CCceEEE--eecCcccccc
Q 037346 1078 ATASVDTATDNQIQQTLRQHF-SDCTVVT--IAHRITSVLD 1115 (1156)
Q Consensus 1078 aTS~LD~~te~~I~~~l~~~~-~~~TvI~--IaHrl~ti~~ 1115 (1156)
|+++|+++...+.+.|.++. .++|++. ++|+++.+..
T Consensus 416 -~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 416 -ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp -EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred -EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 99999988777666665553 3688875 8999988753
No 281
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.36 E-value=1.6e-07 Score=106.65 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=64.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhccc-CCCceEEEc-CeeCCCCChHHHhhcCeeeccccccccc-cchhccCCCCCCCH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVE-STAGHILID-GKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHAD 1036 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~d 1036 (1156)
+..++|.|+||||||||+++|.|+.. |.+|+|.++ |.+.. ...++.++++||++.+++. |++++-.. ..+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~~ 288 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVREFGLW--HLEP 288 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCCH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHHhhhc--CCCH
Confidence 44568999999999999999999999 999999997 76643 2346789999999998865 89987322 2344
Q ss_pred HH----HHHHHHHcCCChHHHhhcCCcc
Q 037346 1037 EQ----IWEALDKCQLGDEVRKKKGKLD 1060 (1156)
Q Consensus 1037 ee----i~~al~~~~l~~~i~~lp~gl~ 1060 (1156)
++ +.++++.+++.++....+..+.
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~~~~~lS 316 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDCKHDADP 316 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTCCSSSCT
T ss_pred HHHHHHHHHHHHHcCCchhcCCCcccCC
Confidence 44 4467778888877766666664
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.36 E-value=5.8e-07 Score=97.39 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=78.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHH-HhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhc----cCC-
Q 037346 958 APNLPLVLRGRTGSGKSTLIQT-LFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSN----LDP- 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~l-L~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~N----l~~- 1030 (1156)
++++-.+|.|++|||||||+.. +....+...+.+++++.. ..-.+....+++++.+|+.... +-++.+. +..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKS 99 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhcccc
Confidence 4566567889999999999654 455555545556666533 2111222234577877764211 0011110 000
Q ss_pred --------CCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccc--cCCCEEEEecCCcCC--CHHHHHHHHHHHHHh-
Q 037346 1031 --------LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL--KKSKVLVLDEATASV--DTATDNQIQQTLRQH- 1097 (1156)
Q Consensus 1031 --------~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALL--r~~~ILiLDEaTS~L--D~~te~~I~~~l~~~- 1097 (1156)
..+.+-+++.+.+ +.++ .+|+++++|++|+-+ |+.........+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~i--------------------~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~ 159 (247)
T 2dr3_A 100 KEYEKYIVHDLTDIREFIEVL--------------------RQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL 159 (247)
T ss_dssp -CCCSCBCSCCSSHHHHHHHH--------------------HHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHH--------------------HHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH
Confidence 0011112222211 1111 368999999999887 543323332333322
Q ss_pred -cCCceEEEeecCccc---------ccccCEEEEEeC
Q 037346 1098 -FSDCTVVTIAHRITS---------VLDSAMVLLLNH 1124 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t---------i~~~D~I~Vl~~ 1124 (1156)
..++|||+++|.... ...||.|+.|+.
T Consensus 160 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 160 AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 248999999998764 245899999974
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.34 E-value=7.5e-08 Score=100.06 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
++..++|.||||||||||++.|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.+++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~ 92 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQ 92 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEET
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhh
Confidence 355678999999999999999999986 77887 799999999999999876 799999999999
Q ss_pred hccCCCCCCCHHHHHHHHHH
Q 037346 1026 SNLDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1026 ~Nl~~~~~~~deei~~al~~ 1045 (1156)
+|. ++. +.+.+.+++++
T Consensus 93 ~n~-YGt--~~~~v~~~l~~ 109 (197)
T 3ney_A 93 GNM-FGT--KFETVHQIHKQ 109 (197)
T ss_dssp TEE-EEE--EHHHHHHHHHT
T ss_pred cee-ccc--chhhHHHHHhc
Confidence 995 542 35667776664
No 284
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.34 E-value=7.3e-08 Score=103.81 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHh-CCC
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL-GGV 410 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~-g~~ 410 (1156)
....+++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999 998
No 285
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.32 E-value=2.2e-08 Score=110.75 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=83.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc-cccc-ccchhccCCCCCC-CHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFE-GTTRSNLDPLEEH-ADEQI 1039 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp-~LF~-gTIr~Nl~~~~~~-~deei 1039 (1156)
+.|.||+|||||||+++|.+...+ |.|.++|.++.+......++.+++++|++ ..+. -++.||++..... .+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~ 124 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc
Confidence 678999999999999999999876 79999999998877778888999999986 3443 3778999864321 11111
Q ss_pred HHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcC------------CCHHHHHHHHHHH
Q 037346 1040 WEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATAS------------VDTATDNQIQQTL 1094 (1156)
Q Consensus 1040 ~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~------------LD~~te~~I~~~l 1094 (1156)
...... +..++..+.+|-. ..++|+..+|++| |||+.- -|.+....|.+.+
T Consensus 125 -~~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 125 -GASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ---CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred -hHHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 000000 1122333333322 2379999999985 999752 2566666665544
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.31 E-value=2.1e-07 Score=95.99 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccC-CCceEE----------EcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHIL----------IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
+..++|.||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. +.|+.+++.+++.+|.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n~ 81 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDAM 81 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCcc
Confidence 445789999999999999999999863 445543 47777777888888874 5799999999999994
Q ss_pred CCCCCCCHHHHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~ 1045 (1156)
++ .+.+++.++++.
T Consensus 82 -yg--~~~~~i~~~l~~ 95 (180)
T 1kgd_A 82 -YG--TKLETIRKIHEQ 95 (180)
T ss_dssp -EE--EEHHHHHHHHHT
T ss_pred -cc--ccHHHHHHHHHC
Confidence 32 235567666654
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.30 E-value=2.2e-07 Score=103.61 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH-HHhhcCeeeccccccccccchhccCCC---CCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH-DLRTRLSIIPQDPTMFEGTTRSNLDPL---EEH 1034 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~-~LR~~i~~VpQdp~LF~gTIr~Nl~~~---~~~ 1034 (1156)
++..+++.|++|+||||++..|++++.+.+|+|.+.|.|+..-... +++. + .-+.|++.. ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~----~---------~~~~~l~~~~~~~~~ 163 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL----L---------GEKVGVPVLEVMDGE 163 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH----H---------HHHHTCCEEECCTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH----h---------cccCCeEEEEcCCCC
Confidence 3444677899999999999999999999999999999887653221 1110 0 001233211 111
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecC-CcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEA-TASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
...++. .+..+++..++++++|+||| |+++|...-..+.+..+....+.+++++.
T Consensus 164 ~p~~l~------------------~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 164 SPESIR------------------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CHHHHH------------------HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CHHHHH------------------HHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 122220 01124445578999999999 99999988888888777665666666554
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.28 E-value=2.6e-08 Score=113.39 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHHhhcCeeecccccccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~LR~~i~~VpQdp~LF~ 1021 (1156)
++..++|.|++|||||||++.|.|++.|++|+|.+.|.|+.+.. ....|+++++++|++.+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 34456899999999999999999999999999999999986543 2346788999999999885
No 289
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.28 E-value=6.2e-08 Score=100.98 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=71.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC-----------CCcEEEEcCeE-EE-EecCCcC--CCccHHHHh------hcC-C
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK-----------ESGIIRLCGTK-AY-VAQSPWI--QSGKIEENI------LFG-K 445 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~-----------~~G~i~~~g~~-~~-v~Q~~~~--~~~ti~eni------~~~-~ 445 (1156)
.++|+|++|||||||++.+.|...+ ..|+|.++|.. .+ +...+-. +...+.... .+- .
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 47888888852 11 0111110 111111111 000 0
Q ss_pred CCCHHHH-------HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 446 EMDRERY-------ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 446 ~~~~~~~-------~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
..+...+ ..+.+.+.... | --.++.+ ..|..-..+...+||++..+|+++++| ||++|....
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~-----~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNI-----V---IMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTC-----E---EEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCC-----c---EEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 0112111 11111111000 0 0111222 112222223478899999999999999 999999999
Q ss_pred HHHHHHHH
Q 037346 519 AHLFKFCW 526 (1156)
Q Consensus 519 ~~i~~~~~ 526 (1156)
..+++.+.
T Consensus 180 ~~l~~~l~ 187 (191)
T 1oix_A 180 EAAFQTIL 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888664
No 290
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.27 E-value=1.1e-07 Score=117.40 Aligned_cols=138 Identities=13% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC-cEEEEcC--------eEEEEecCC-------------
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCG--------TKAYVAQSP------------- 430 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~-G~i~~~g--------~~~~v~Q~~------------- 430 (1156)
..+++++++.+++|+.++|+||+|||||||+++|.|.+++.. |.+.+++ .++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999999887 6777644 356776643
Q ss_pred ---------cCC-CccHHHHhhcCCCCC---------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 431 ---------WIQ-SGKIEENILFGKEMD---------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 431 ---------~~~-~~ti~eni~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
|.+ ..++.+|+..+.... ...+.. .+..... -......+|+|++|++
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~---------L~G~~~~-----~~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGA---------LLGDVRH-----DPFQSGGLGTPAHERV 192 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHH---------HHCEECC-----CCC----CCCCGGGGE
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHh---------cCceEEe-----chhhcCCccccccccc
Confidence 111 113333333221000 000000 0000000 0011235899999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~ 525 (1156)
..++....++.+|+|||+-. |++.....+.+.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHH
Confidence 99999999999999999887 7988888776654
No 291
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.26 E-value=6.1e-07 Score=100.91 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc--CCCceEEE---cCeeCCCCChHHHhhcCeeecccccccc-ccchhccCCCCCCCH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE--STAGHILI---DGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~--p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~~~~~~d 1036 (1156)
++|.|+||||||||+++|.|++. |++|+|.+ ||.+.. ...|+.++++ |+..++. -|+.+|+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~------- 150 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVK------- 150 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHH-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHH-------
Confidence 57899999999999999999998 99999999 998753 3456778888 7654432 24444432
Q ss_pred HHHHHHHHHc-CCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1037 EQIWEALDKC-QLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1037 eei~~al~~~-~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
.+... +-.+.+ ..| .++.. +.+.+.+++++|+|.|....|.
T Consensus 151 -----~~~~l~~~~~~i-~~P-~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 151 -----FVSDLKSGVPNV-TAP-VYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -----HHHHHTTTCSCE-EEC-CEETTTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -----HHHHHhCCCCce-ecc-cccccccCcccccceecCCCCEEEECchhhCCCc
Confidence 11111 111101 112 11111 2345678899999999887663
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.24 E-value=1.5e-06 Score=99.27 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=83.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
-+++|+++.|.||+|||||||+..++....... +.+.|+.-+... +.. ..+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~~~---------------~~~----~a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEHAL---------------DPE----YAKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSCCC---------------CHH----HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCCCc---------------CHH----HHHHcCC
Confidence 588999999999999999999888876554332 355666654321 111 1222332
Q ss_pred chhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC--CCeeeeeCCCCCc----------CH---HHHH---HHHH
Q 037346 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD--ADIFLLDDPFSPV----------DD---HTGA---HLFK 523 (1156)
Q Consensus 462 ~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~--~~illlDep~s~l----------D~---~~~~---~i~~ 523 (1156)
.. +.+ .+-. ..++ .|-+.+++++..+ |+++++|++++.+ |+ ...+ +.+.
T Consensus 112 ~~--~~l------~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 112 DT--DSL------LVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp CG--GGC------EEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred CH--HHe------EEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 21 111 0100 1133 2345678888754 9999999999988 33 1111 1222
Q ss_pred HHH---hcCCCEEEEEccCCCc----------------cc-cCCEEEEEeCCeEEEcc
Q 037346 524 FCW---VSSSKTVIYATHQVEF----------------LP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 524 ~~~---~~~~~tvi~vtH~~~~----------------~~-~~d~i~~l~~G~i~~~g 561 (1156)
.+. ...+.|+|+++|-... +. .||.++.++.+++...|
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 221 2458899999996431 33 38888888776665444
No 293
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.24 E-value=2.9e-06 Score=96.77 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.|++|||||||+..+..-.....|. +++|... ..+. ...+++++-+|+..++ .+.+-
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~-----------~~~~~ 124 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS-----------QPDTG 124 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE-----------CCSSH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe-----------cCCCH
Confidence 455556778999999999988887655444554 5566543 1222 2345677666654432 12233
Q ss_pred HHHHHHHHHcCCChHHHhhcCCcccccccccc--CCCEEEEecCCcCC----------CH---HHHHHHHHHHHHh----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLK--KSKVLVLDEATASV----------DT---ATDNQIQQTLRQH---- 1097 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr--~~~ILiLDEaTS~L----------D~---~te~~I~~~l~~~---- 1097 (1156)
+++.+ .++++.+ +|+++|+||+|+-+ |+ ...+.+.+.++++
T Consensus 125 e~~l~--------------------~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a 184 (349)
T 2zr9_A 125 EQALE--------------------IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 (349)
T ss_dssp HHHHH--------------------HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHH
Confidence 33322 1344443 48999999999988 32 1122344444433
Q ss_pred -cCCceEEEeecCccc----------------c-cccCEEEEEeCcEEeeecC
Q 037346 1098 -FSDCTVVTIAHRITS----------------V-LDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t----------------i-~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
..++|||+++|-... + ..||.++.+..+++...|+
T Consensus 185 ~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 185 NNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 138999999995431 2 3589999998887765554
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.24 E-value=2.8e-07 Score=96.96 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=63.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCC----CC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDP----LE 1032 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~----~~ 1032 (1156)
.++..++|.||||||||||+++|.|++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+.. .+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYE 80 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeec
Confidence 456667899999999999999999997 3 689999888887766678889999999988865 45555421 11
Q ss_pred ---CCCHHHHHHHHHH
Q 037346 1033 ---EHADEQIWEALDK 1045 (1156)
Q Consensus 1033 ---~~~deei~~al~~ 1045 (1156)
....+++.++++.
T Consensus 81 ~~~~~~~~~i~~~l~~ 96 (205)
T 3tr0_A 81 RHYGTEKDWVLRQLKA 96 (205)
T ss_dssp EEEEEEHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHc
Confidence 1224567776665
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.23 E-value=1.2e-08 Score=117.33 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=81.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE-c----C---eEEEEecCCcCCCccHHHHhhcCC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL-C----G---TKAYVAQSPWIQSGKIEENILFGK 445 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~-~----g---~~~~v~Q~~~~~~~ti~eni~~~~ 445 (1156)
.+++++++.+++|++++|+||+|||||||+++|+|. .+|.+.. + + .+++++|.+.+ +.|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV----VFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE----EETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH----HHHHHHHHH
Confidence 579999999999999999999999999999999985 4677655 2 1 24555665432 233333222
Q ss_pred C----C---CH----HHHHHHHHH---hCCch----hhh-hCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee-
Q 037346 446 E----M---DR----ERYERVLEA---CSLKK----DLE-VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL- 505 (1156)
Q Consensus 446 ~----~---~~----~~~~~~~~~---~~l~~----~~~-~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill- 505 (1156)
. . +. ..+...+.. ..+.. .+. .++.| .+..+...+++|++||++.+.+++.+|++++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1 0 10 111112110 00000 000 11111 2345566799999999999999999999988
Q ss_pred eeCCCC
Q 037346 506 LDDPFS 511 (1156)
Q Consensus 506 lDep~s 511 (1156)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999987
No 296
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.22 E-value=1.2e-06 Score=104.13 Aligned_cols=166 Identities=11% Similarity=0.069 Sum_probs=100.1
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHH------------h
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEEN------------I 441 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~en------------i 441 (1156)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-. ...+.+. +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-----~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~l 263 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-----ENVAIFSLEMS--AQQLVMRMLCAEGNINAQNL 263 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-----CCEEEEESSSC--HHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEEECCCC--HHHHHHHHHHHHcCCCHHHH
Confidence 468888888999999999999999999999999987665433 14555554311 1112222 1
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc--cCCCeeeeeCCCCCcCHH---
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY--QDADIFLLDDPFSPVDDH--- 516 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~--~~~~illlDep~s~lD~~--- 516 (1156)
.-| ..+++.+.++.++.+. +...| -.+.+ ...+|++|.+ +.+|++. .+|+++++|+++...+..
T Consensus 264 ~~g-~l~~~~~~~~~~a~~~---l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 264 RTG-KLTPEDWGKLTMAMGS---LSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTS-CCCHHHHHHHHHHHHH---HHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred hcC-CCCHHHHHHHHHHHHH---HhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 112 2333333333333211 11111 11111 2468999876 5566665 689999999999887431
Q ss_pred -----HHHHHHHHHH---hcCCCEEEEEcc---------C--CC--------ccc-cCCEEEEEeCCeE
Q 037346 517 -----TGAHLFKFCW---VSSSKTVIYATH---------Q--VE--------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 517 -----~~~~i~~~~~---~~~~~tvi~vtH---------~--~~--------~~~-~~d~i~~l~~G~i 557 (1156)
....+.+.+. +..+.+||+++| + +. .+. .||.|++|..++.
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1123333332 234789999999 2 32 343 4999999986654
No 297
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=1.4e-07 Score=105.00 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHhhcCeeecccccccc-----ccchhccC-C
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLRTRLSIIPQDPTMFE-----GTTRSNLD-P 1030 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~LF~-----gTIr~Nl~-~ 1030 (1156)
++..+|.|+||||||||+++|.|+..|..|+|.+ +|.++.... +..+..+++|+|+|-++. -|+ +|+. .
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~ 250 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELGYT 250 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHHHH
Confidence 4556899999999999999999999999999999 898877643 222223899999997654 366 7772 1
Q ss_pred C------------C-----CCCHHHHHHHHHHcCCChH
Q 037346 1031 L------------E-----EHADEQIWEALDKCQLGDE 1051 (1156)
Q Consensus 1031 ~------------~-----~~~deei~~al~~~~l~~~ 1051 (1156)
+ . ...+..+.++++..++.+.
T Consensus 251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 1 1 1123468888888888764
No 298
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=5.9e-07 Score=92.64 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=57.3
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE---------EEc----------CeEEEEecCCcC-C---
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII---------RLC----------GTKAYVAQSPWI-Q--- 433 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i---------~~~----------g~~~~v~Q~~~~-~--- 433 (1156)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|.. ..+ ..+.+++|+|.- +
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 999999999999999999998877655431 111 146778887631 1
Q ss_pred --CccHHHHhh---------cCCCCCHHHHHHHHHHhCCch
Q 037346 434 --SGKIEENIL---------FGKEMDRERYERVLEACSLKK 463 (1156)
Q Consensus 434 --~~ti~eni~---------~~~~~~~~~~~~~~~~~~l~~ 463 (1156)
.-+|...+. -|.+...+.+.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 113322221 122334667778888777754
No 299
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.16 E-value=3.7e-08 Score=116.87 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=85.0
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhC--CCCCCCcEEEE---cCeE-EE--EecCCcCCCccHHHHhhcC-----
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRL---CGTK-AY--VAQSPWIQSGKIEENILFG----- 444 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~~~G~i~~---~g~~-~~--v~Q~~~~~~~ti~eni~~~----- 444 (1156)
.+++++.++..++|.|++||||||++++|.. .+.++.|++.+ |.+- .+ ...-|++. ++|.+|....
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~-~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLL-TEVVTDMKDAANALR 237 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBS-SSCBCSHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCccc-ceeecCHHHHHHHHH
Confidence 4678889999999999999999999999876 45555566554 2211 00 00112221 1121111100
Q ss_pred --CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH----------HHHHhhccCCC-eeeeeCCCC
Q 037346 445 --KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI----------QIARPLYQDAD-IFLLDDPFS 511 (1156)
Q Consensus 445 --~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi----------~lAral~~~~~-illlDep~s 511 (1156)
....++|| +.++..++.+.-. ++..+ ...+||||+||. ++|+++...|. ++++||+.+
T Consensus 238 ~~~~EmerR~-~ll~~~Gv~~i~~-----yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ 308 (512)
T 2ius_A 238 WCVNEMERRY-KLMSALGVRNLAG-----YNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD 308 (512)
T ss_dssp HHHHHHHHHH-HHHHHTTCSSHHH-----HHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred HHHHHHHHHH-HHHHHcCCccHHH-----HHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence 00012232 3344444322110 00000 124788887752 46778888898 899999999
Q ss_pred CcCHHHH--HHHHHHHHh---cCCCEEEEEccCCC
Q 037346 512 PVDDHTG--AHLFKFCWV---SSSKTVIYATHQVE 541 (1156)
Q Consensus 512 ~lD~~~~--~~i~~~~~~---~~~~tvi~vtH~~~ 541 (1156)
.+|.... ..++..+.+ ..|.++|++||+++
T Consensus 309 ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 309 LMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8884321 122232322 23779999999987
No 300
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.16 E-value=1.5e-06 Score=102.72 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=55.4
Q ss_pred ccccc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC-CceEEEeecCcccccccCEEEEEeC
Q 037346 1063 GRVLL----KKSKVLVLDEATASVDTATDNQIQQTLRQHFS-DCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1063 ARALL----r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
||+|+ ++|++|||||||++||+.+...+.+.|++..+ +.|+|+|||+...+..||+++++..
T Consensus 345 a~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 345 ALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp HHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 66666 68999999999999999999999999988753 6799999999988889999999963
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.11 E-value=2.1e-07 Score=96.60 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999998
No 302
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.11 E-value=3.4e-07 Score=97.52 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred EEEEEEEEEEcCC-----CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh--------HHHhhcCeeec
Q 037346 948 VNIRHLQVRYAPN-----LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL--------HDLRTRLSIIP 1014 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~-----~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~--------~~LR~~i~~Vp 1014 (1156)
++++|+...|..+ +..+|.||||||||||+++|.+++.|++|.|.++|.++...+. ..+|..+++|+
T Consensus 10 l~l~~~~~~~~~~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 89 (227)
T 1qhl_A 10 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSM 89 (227)
T ss_dssp EEEEEETTEEEEEECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEE
T ss_pred EEEEeeecccCCEEEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEE
Confidence 5556654433211 2246779999999999999999999999999999999854332 23467789998
Q ss_pred cc
Q 037346 1015 QD 1016 (1156)
Q Consensus 1015 Qd 1016 (1156)
|+
T Consensus 90 ~~ 91 (227)
T 1qhl_A 90 LD 91 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 85
No 303
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.10 E-value=2.7e-06 Score=100.97 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=87.7
Q ss_pred EEEEEcCCCCceeeCCCCCCHHHHHHHHhh--cccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFR--IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 953 Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
|.+....+....+.|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++.+|..-
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~~ 231 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMKD 231 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHHH
Confidence 344444444556779999999999999876 67777899999899888765554432 122221 12222110
Q ss_pred CC---CCCHHHH---HHHHHHcCCChHHHh-------hcCC-------------ccccccccccCCC-EEEEecCCcCCC
Q 037346 1031 LE---EHADEQI---WEALDKCQLGDEVRK-------KKGK-------------LDSQGRVLLKKSK-VLVLDEATASVD 1083 (1156)
Q Consensus 1031 ~~---~~~deei---~~al~~~~l~~~i~~-------lp~g-------------l~s~ARALLr~~~-ILiLDEaTS~LD 1083 (1156)
.. ....+|+ .+.++.+|+.+.-.. +.+| .+..++++-..|. ++++||+++.+|
T Consensus 232 a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 232 AANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 00 0001122 355667776543221 1111 1123677778898 789999999988
Q ss_pred HHHHHHHHHHHHHh---c--CCceEEEeecCcc
Q 037346 1084 TATDNQIQQTLRQH---F--SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~---~--~~~TvI~IaHrl~ 1111 (1156)
... ..+.+.|.++ - .|.++|++|||++
T Consensus 312 ~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 312 TVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 432 3344443322 2 2779999999987
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.10 E-value=5.9e-08 Score=104.05 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC---CCCCcEEEE--------cCe--------------EEEEecCC------cCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV---PKESGIIRL--------CGT--------------KAYVAQSP------WIQS 434 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~---~~~~G~i~~--------~g~--------------~~~v~Q~~------~~~~ 434 (1156)
+.+++|+||+||||||+.+.|.+.+ .++.|.+.. +|. +++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999998876 566777655 332 35566654 2234
Q ss_pred ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCcccc-ccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 435 GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTII-GERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 435 ~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v-~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
.++.+++. .+....++..+...+.+.....+..+.+ ..+|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 45556542 3455666666666655543322222222 2345667776 4667788889998888764
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.09 E-value=1.2e-06 Score=91.57 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=70.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc-----cC------CCceEEEcCeeCC----CC-ChHHHhhcCeeeccccc--c--ccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV-----ES------TAGHILIDGKDIS----LI-GLHDLRTRLSIIPQDPT--M--FEG 1022 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~-----~p------~~G~I~idG~di~----~i-~~~~LR~~i~~VpQdp~--L--F~g 1022 (1156)
+++.|++|||||||++.|.|.. .| ..|+|.++|.++. +. +.+..|+......|++. + |+.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI 87 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEEC
Confidence 5788999999999999999973 23 3689999997652 22 23344443333334331 1 222
Q ss_pred cchhccCCCCCCCHHHHHHHHHHc-CCChHH----Hh--hcC---CccccccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1023 TTRSNLDPLEEHADEQIWEALDKC-QLGDEV----RK--KKG---KLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1023 TIr~Nl~~~~~~~deei~~al~~~-~l~~~i----~~--lp~---gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
+-..-. . .-......++.. .-..-+ .+ +++ .....||++.++|+++++| ||++|.+.-..+.+
T Consensus 88 ~~~~s~---~--~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 88 AKHLTY---E--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFK 160 (199)
T ss_dssp TCHHHH---H--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred cCHHHH---H--HHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHH
Confidence 111000 0 001111112111 100000 00 000 0012389999999999999 99999998887777
Q ss_pred HHHHh
Q 037346 1093 TLRQH 1097 (1156)
Q Consensus 1093 ~l~~~ 1097 (1156)
.|.+.
T Consensus 161 ~l~~~ 165 (199)
T 2f9l_A 161 NILTE 165 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 306
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.05 E-value=4.2e-06 Score=99.00 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~ 453 (1156)
..++++++.+++| +.|+||+|+|||||+++|.++... ...++. ..+.+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------~f~~is---------~~~~~------------ 86 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------PFFHIS---------GSDFV------------ 86 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------CEEEEE---------GGGTT------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------CeeeCC---------HHHHH------------
Confidence 3577788888888 889999999999999999986421 111111 00000
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC----------CCcCHHHHHHHHH
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF----------SPVDDHTGAHLFK 523 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~----------s~lD~~~~~~i~~ 523 (1156)
.. .+| .|++++|-.+++|....|.|+++||+- ++.|....+.+.+
T Consensus 87 ------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 87 ------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 00 011 278899999999999999999999993 3555554433322
Q ss_pred HHHh------cCCCEEEEEccCCCcc
Q 037346 524 FCWV------SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 524 ~~~~------~~~~tvi~vtH~~~~~ 543 (1156)
.+.. ..+..+|.+||+++.+
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHhccCCCCCEEEEEecCChhhh
Confidence 2211 2356788899998654
No 307
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.04 E-value=5.3e-06 Score=87.32 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=72.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhh
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEV 467 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (1156)
+++|+|++||||||+.+.|.++ |...+++ +.+...+.. + ....+.++.+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~-------------d~~~~~~~~--~-~~~~~~~i~~~~g~~----- 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA-------------DVVAREVVA--K-DSPLLSKIVEHFGAQ----- 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH-------------HHHHHHTTC--S-SCHHHHHHHHHHCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch-------------HHHHHHHcc--C-ChHHHHHHHHHhCHH-----
Confidence 6899999999999999999982 4333332 111111110 1 012233333333211
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCc---cc
Q 037346 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEF---LP 544 (1156)
Q Consensus 468 ~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~---~~ 544 (1156)
.-.++|+.+|..+++.++.+|+....+ .+.++|...+.+.+.+....+.++|+.+|.+.. .+
T Consensus 58 -------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 58 -------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp -------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGG
T ss_pred -------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHh
Confidence 124688999999999999888755443 335567666665544433346688888887754 34
Q ss_pred cCCEEEEEe
Q 037346 545 AADLILVIK 553 (1156)
Q Consensus 545 ~~d~i~~l~ 553 (1156)
.||.+++++
T Consensus 123 ~~d~vi~l~ 131 (206)
T 1jjv_A 123 LCDRILVVD 131 (206)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 699999986
No 308
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.04 E-value=2.3e-06 Score=99.53 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
+-+++++.......++|.|++|||||||+++|.+... .+.+.+..++ ...+++|+|+.. ..-++.|+.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 4589999999988899999999999999999999843 3555554443 345777877640 111233332
Q ss_pred CCCC------CCCHHHHHHHHHHc-------CC-ChHHHhhcCCc---cccccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1029 DPLE------EHADEQIWEALDKC-------QL-GDEVRKKKGKL---DSQGRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1029 ~~~~------~~~deei~~al~~~-------~l-~~~i~~lp~gl---~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
-... ..... ..+.++.+ ++ .+.+..+..+. ...||+|..+|.||++ +.+|..+...+.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred ccccchhhhhhhhHH-HHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 1110 11111 11222222 11 12222221111 1227889999999999 899987663333
Q ss_pred HHHHHh-cCCceEEEee
Q 037346 1092 QTLRQH-FSDCTVVTIA 1107 (1156)
Q Consensus 1092 ~~l~~~-~~~~TvI~Ia 1107 (1156)
+..+.. ..+.+++.|+
T Consensus 289 ~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 289 ALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHTTTSCEEECC
T ss_pred HHHHHHHhcCCeEEEEE
Confidence 332222 1356877776
No 309
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=5.3e-07 Score=97.74 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=35.9
Q ss_pred cEEEeee-EEEeCCCCCCCccccceEEeeC---CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 357 AIEIIDG-SFSWDFSSPNPTLRNINLKVFH---GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 357 ~i~~~~~-~f~~~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++++|+ +|+|. .+.++|+|+||+|++ |+.++|+|++||||||+.+.|++.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 245799999999999 9999999999999999999998855
No 310
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.00 E-value=1.3e-07 Score=100.70 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=41.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~ 422 (1156)
.++++|++..+. . ++++.+ ++++|+||||||||||+++|+|.+.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~---~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA---R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE---E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccC---C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 477888765542 1 566666 899999999999999999999999999999988874
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.97 E-value=2.3e-06 Score=108.03 Aligned_cols=144 Identities=18% Similarity=0.108 Sum_probs=85.5
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACS 460 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~ 460 (1156)
.+..|+.++|+||+||||||++..+++...+..| +|. +.++ | |. .... ...++++.+..+
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl-~-P~---r~La----------~q~~~~l~~~~~ 165 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACT-Q-PR---RVAA----------MSVAQRVAEEMD 165 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEE-E-SC---HHHH----------HHHHHHHHHHTT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEec-C-ch---HHHH----------HHHHHHHHHHhC
Confidence 3567899999999999999999888776554443 122 2222 1 11 0000 011122222222
Q ss_pred Cchh--hh-hCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHHh-c-CCCEEE
Q 037346 461 LKKD--LE-VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCWV-S-SSKTVI 534 (1156)
Q Consensus 461 l~~~--~~-~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~~-~-~~~tvi 534 (1156)
.... .. .......+.-+....-+|+|+.+|..++++++.+++++|+|||.. +||......+++.+.. . ..++++
T Consensus 166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl 245 (773)
T 2xau_A 166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIII 245 (773)
T ss_dssp CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEE
Confidence 1110 00 000000011122345689999999999999999999999999997 8998766555555443 2 346777
Q ss_pred E-EccCCCccc
Q 037346 535 Y-ATHQVEFLP 544 (1156)
Q Consensus 535 ~-vtH~~~~~~ 544 (1156)
+ +||+.+.+.
T Consensus 246 ~SAT~~~~~l~ 256 (773)
T 2xau_A 246 MSATLDAEKFQ 256 (773)
T ss_dssp EESCSCCHHHH
T ss_pred EeccccHHHHH
Confidence 7 489876543
No 312
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.96 E-value=7.6e-06 Score=91.35 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=34.7
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
.+++.|++||||||++..|++.+.+.+|+|.+.+.|+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 357889999999999999999999999999998888654
No 313
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.95 E-value=4.9e-07 Score=98.63 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=47.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHh---CCCCCCCcEEE--------EcC--------------eEEEEecC------CcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCIL---GGVPKESGIIR--------LCG--------------TKAYVAQS------PWI 432 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~---g~~~~~~G~i~--------~~g--------------~~~~v~Q~------~~~ 432 (1156)
++|++++|+||+||||||++++|+ |+..++.|.+. .+| .+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999987 444 24677754 345
Q ss_pred CCccHHHHhh
Q 037346 433 QSGKIEENIL 442 (1156)
Q Consensus 433 ~~~ti~eni~ 442 (1156)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5667777764
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.93 E-value=2.9e-06 Score=100.84 Aligned_cols=165 Identities=14% Similarity=0.207 Sum_probs=99.0
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcC-----eeeccccccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRL-----SIIPQDPTMFEG 1022 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i-----~~VpQdp~LF~g 1022 (1156)
.++++....+++.-++|.||+|+|||||+..+++..-+..| .+.+-+.+ .+.+++++++ ++-+|+ +..|
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~~--l~~g 266 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQN--LRTG 266 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHHH--HHTS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHHH--HhcC
Confidence 45666555677777788899999999999999998876555 67665543 4556666553 222222 1222
Q ss_pred cchhccCCCCCCCHHH---HHHHHHHcCCChHHHhhcCCcc-----ccccccc--cCCCEEEEecCCcCCCHH-------
Q 037346 1023 TTRSNLDPLEEHADEQ---IWEALDKCQLGDEVRKKKGKLD-----SQGRVLL--KKSKVLVLDEATASVDTA------- 1085 (1156)
Q Consensus 1023 TIr~Nl~~~~~~~dee---i~~al~~~~l~~~i~~lp~gl~-----s~ARALL--r~~~ILiLDEaTS~LD~~------- 1085 (1156)
..++++ +.++++..+........+.++. ..+|++. .+|+++|+|+++.-.+..
T Consensus 267 ----------~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 267 ----------KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred ----------CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 223333 4445544432221111122222 2256666 479999999999877431
Q ss_pred -HHHHHHHHHHHhc--CCceEEEeec---------C--cc--------cc-cccCEEEEEeCcEEe
Q 037346 1086 -TDNQIQQTLRQHF--SDCTVVTIAH---------R--IT--------SV-LDSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1086 -te~~I~~~l~~~~--~~~TvI~IaH---------r--l~--------ti-~~~D~I~Vl~~G~Iv 1128 (1156)
.-..+.+.|+.+. .++|||+++| . +. .+ .+||.|++|..++.-
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 1134555555443 3899999999 1 32 23 359999999877654
No 315
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.91 E-value=6.8e-07 Score=100.24 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred CccccceEEeeCCe------EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHh----hc
Q 037346 374 PTLRNINLKVFHGM------RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI----LF 443 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~------~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni----~~ 443 (1156)
..|++++..+.+++ +++|+||||||||||+++|.+.+.+..+ .|.+++++++.+.......+.. .+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~----~~~v~~i~~D~f~~~~~~l~~~~~~~~~ 149 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD----HPNVEVITTDGFLYSNAKLEKQGLMKRK 149 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC----CCeEEEEeecccccchhhhhhHHHHhhc
Confidence 45666666666665 9999999999999999999999874211 2456778888766544333321 12
Q ss_pred CC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 444 GK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 444 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
|. .++.+...+.++...- |..+. . .-..|-+..+|+.-+......|+|+|++-+..-.|.
T Consensus 150 g~P~~~D~~~l~~~L~~L~~---------g~~~v-~--~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 150 GFPESYDMPSLLRVLNAIKS---------GQRNV-R--IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TSGGGBCHHHHHHHHHHHHT---------TCSSE-E--EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCcccccHHHHHHHHHhhhc---------ccccc-c--cchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 32 3566666666554321 11000 0 001222223333323455678999999999875544
No 316
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=3.9e-06 Score=87.92 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred EeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 366 ~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|+.++..++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 355556678999999999999999999999999999999999765
No 317
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.90 E-value=2e-05 Score=90.71 Aligned_cols=45 Identities=36% Similarity=0.460 Sum_probs=34.5
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC--CCCCCCcEEEEc
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRLC 420 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~~~G~i~~~ 420 (1156)
..+|++++++++ .++|+|++|||||||++.|.| ++++..|.+...
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 358999999998 999999999999999999999 667777765433
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.88 E-value=1.3e-05 Score=83.72 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
...||++..+|++.++| +||+|......+++.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999888887654
No 319
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.88 E-value=6.1e-06 Score=94.66 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=75.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-----------CCCcEEEEcCeE-------EEEecCCcC----CCccHH-----HH
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP-----------KESGIIRLCGTK-------AYVAQSPWI----QSGKIE-----EN 440 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~-----------~~~G~i~~~g~~-------~~v~Q~~~~----~~~ti~-----en 440 (1156)
.++|+|++|||||||++.|.|... +..|.+.++|.. |++.|.|.- |..|.. |.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 489999999999999999999875 567889998853 333332211 111111 12
Q ss_pred hhcCCCC---C---HHH---HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH----Hhh-ccCCCeeee
Q 037346 441 ILFGKEM---D---RER---YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA----RPL-YQDADIFLL 506 (1156)
Q Consensus 441 i~~~~~~---~---~~~---~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA----ral-~~~~~illl 506 (1156)
+++--+. . .+. ..++++..++. ..---.|+.+...+|+|++||+.++ +++ ..++++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-------~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVS-------GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-------SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcC-------CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 2221111 1 111 12333333221 1112234566667888899988877 666 444454
Q ss_pred eCCCCCcCHHHHHHHHHHHH
Q 037346 507 DDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~ 526 (1156)
+|+|++|......+++.+.
T Consensus 331 -~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHH
Confidence 7999999988888877653
No 320
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.84 E-value=1.4e-05 Score=90.11 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHH-H
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRER-Y 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~-~ 452 (1156)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++....... +.+.|++=+ .+.+. .
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------~~Vl~fSlE-----------------ms~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------RGVAVFSLE-----------------MSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CEEEEEESS-----------------SCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CeEEEEeCC-----------------CCHHHHH
Confidence 45777666799999999999999999999988876543321 244554422 22222 2
Q ss_pred HHHHHH-hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcC-C
Q 037346 453 ERVLEA-CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS-S 530 (1156)
Q Consensus 453 ~~~~~~-~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~-~ 530 (1156)
.+++.. .++.. ..+. . ..||+++.+|++.|...+.+++++|.|+|...+|.. ....+.+.... +
T Consensus 91 ~Rlls~~~~v~~--~~l~---------~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i--~~~ir~l~~~~gg 156 (338)
T 4a1f_A 91 LRALSDLTSINM--HDLE---------S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQI--RLQLRKLKSQHKE 156 (338)
T ss_dssp HHHHHHHHCCCH--HHHH---------H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHH--HHHHHHHHHHCTT
T ss_pred HHHHHHhhCCCH--HHHh---------c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHH--HHHHHHHHHhcCC
Confidence 233222 22221 1110 0 269999999999999999999999999987654422 22223333344 6
Q ss_pred CEEEEEcc
Q 037346 531 KTVIYATH 538 (1156)
Q Consensus 531 ~tvi~vtH 538 (1156)
..+|+|-|
T Consensus 157 ~~lIVIDy 164 (338)
T 4a1f_A 157 LGIAFIDY 164 (338)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEec
Confidence 67777754
No 321
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.80 E-value=8.2e-07 Score=105.66 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=72.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCc-CC-CccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPW-IQ-SGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~-~~-~~ti~ 438 (1156)
..++++++++++| +.|+||+|+|||||+++|.++.. .|.+.+++. +.+++|... .. .-.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999 99999999999999999999875 677777652 123333332 11 12334
Q ss_pred HHh-hcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 439 ENI-LFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 439 eni-~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
|+| .++... .+++ .+.+.. . -..|||||+|+..+++|...+|++ ||+++
T Consensus 130 DEId~l~~~r~~~~~~~~~e~-~~~l~~-----L---------------L~~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDER-EQTLNQ-----L---------------LVEMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHH-HHHHHH-----H---------------HHHGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred ehHHHHHHhhccCcCCCcHHH-HHHHHH-----H---------------HHHhcccccCccEEEEEecCChhh--cCccc
Confidence 444 222110 1111 111111 0 124789999999999999999987 89887
Q ss_pred CC
Q 037346 511 SP 512 (1156)
Q Consensus 511 s~ 512 (1156)
--
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 322
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.77 E-value=0.0001 Score=84.52 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeee-CCCCCcCHHHHHHHHHHHHhc-CCCEEEEEc--cCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLD-DPFSPVDDHTGAHLFKFCWVS-SSKTVIYAT--HQV 540 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlD-ep~s~lD~~~~~~i~~~~~~~-~~~tvi~vt--H~~ 540 (1156)
...+|+|++|++. +.+...++-++++| ++.+++|......+++.+... .++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3468999999887 66666777889999 999999998877777665442 377888888 554
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=2.4e-06 Score=89.65 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE--EEcC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII--RLCG 421 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i--~~~g 421 (1156)
.....+..++..++|++++|+|||||||||+++.|++.+. ..|.+ .++|
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 4567788899999999999999999999999999999987 67876 5553
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.75 E-value=1.2e-05 Score=84.47 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.5
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
+++++|++++|+|||||||||+++.|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999966544
No 325
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.70 E-value=1.8e-05 Score=97.48 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCC-ceEEEcCeeCCCCChHHHhhcCeeecccc------------
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTA-GHILIDGKDISLIGLHDLRTRLSIIPQDP------------ 1017 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~~~~LR~~i~~VpQdp------------ 1017 (1156)
+++++...++..+.|.||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~~~~ 125 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYREKA 125 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHHHhh
Confidence 44444455667788889999999999999999999887 8899988766543 34577877654
Q ss_pred ----------ccc-cccchhccCCCCCC---------CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCC
Q 037346 1018 ----------TMF-EGTTRSNLDPLEEH---------ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKS 1070 (1156)
Q Consensus 1018 ----------~LF-~gTIr~Nl~~~~~~---------~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~ 1070 (1156)
..| .-++.+|+...+.. ......+........ ....+++.++ ++....++
T Consensus 126 ~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~~~~g~~~~g~~~~i~~g~~~~a~~ 202 (604)
T 3k1j_A 126 KSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---PFQSGGLGTPAHERVEPGMIHRAHK 202 (604)
T ss_dssp HHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---CC----CCCCGGGGEECCHHHHTTT
T ss_pred ccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---hhhcCCccccccccccCceeeecCC
Confidence 112 22455555321100 000011111111000 0111233332 45556688
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1071 KVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1071 ~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
.+|+|||... |++.....+.++|++
T Consensus 203 gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 203 GVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp SEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999998 799988888888874
No 326
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.64 E-value=1.3e-05 Score=99.58 Aligned_cols=121 Identities=15% Similarity=0.035 Sum_probs=69.3
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcCe-------------EEEEecCCcCCCccHHHHhhcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCGT-------------KAYVAQSPWIQSGKIEENILFG 444 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~ 444 (1156)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|. +++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli-- 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL-- 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE--
Confidence 456789999999999999999999999976654 45655 2221 12222222222222222221
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~ 523 (1156)
...|. .++ . ...+..-..++.++++| |+.++|+.+.+.+ +
T Consensus 80 --------------------------------DTpG~~~f~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~ 120 (665)
T 2dy1_A 80 --------------------------------DAPGYGDFV-G----EIRGALEAADAALVAVS-AEAGVQVGTERAW-T 120 (665)
T ss_dssp --------------------------------ECCCSGGGH-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-H
T ss_pred --------------------------------eCCCccchH-H----HHHHHHhhcCcEEEEEc-CCcccchhHHHHH-H
Confidence 11111 111 1 11111123566788888 9999999887544 4
Q ss_pred HHHhcCCCEEEEEccCCCcc
Q 037346 524 FCWVSSSKTVIYATHQVEFL 543 (1156)
Q Consensus 524 ~~~~~~~~tvi~vtH~~~~~ 543 (1156)
.+. ..+.++|++.|.++..
T Consensus 121 ~~~-~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VAE-RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH-HTTCCEEEEEECGGGC
T ss_pred HHH-HccCCEEEEecCCchh
Confidence 332 3467888898887653
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.63 E-value=3.5e-05 Score=81.06 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=41.8
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILF 443 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~ 443 (1156)
=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG---GGSCB
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH---hHhhc
Confidence 3578899999999999999999999999875 36899999988765 55544
No 328
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.59 E-value=1.2e-06 Score=97.21 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=53.2
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-ccc-ccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFE-GTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~-gTIr~Nl~ 1029 (1156)
+.|.||+|||||||+++|.+... .|.|.++|.++.+......++.++.++|++. .+. -++.||++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhH
Confidence 67889999999999999999885 8999999988876666667788889999874 333 36778875
No 329
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.59 E-value=1.7e-05 Score=81.58 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEE
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGII 417 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i 417 (1156)
.+|++++|+||||||||||++.|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999999874 34443
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.57 E-value=1.8e-05 Score=82.83 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=44.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
+++..++|.|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~ 85 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWP 85 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccccc
Confidence 455667889999999999999999987 9999999887531 1122346799999876553
No 331
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.56 E-value=8.4e-06 Score=85.42 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=33.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceE--EEcCeeCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI--LIDGKDIS 999 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 999 (1156)
+..++|.|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 44467889999999999999999998 78988 99987665
No 332
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.55 E-value=2.2e-05 Score=82.13 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.8
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
-++.++|++++|+||||||||||++.|.|.+ |.+.++|
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3667899999999999999999999999876 7777665
No 333
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.53 E-value=1.5e-06 Score=98.96 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc----cCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV----ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
..++|.||+|+|||||++++++.. .+.+|.+..+|.|+..+.....+..|.+|+|.+.++. ++.+++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHH
Confidence 346788999999999999999998 7788888877766543311112456899999887765 666665
No 334
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=3.3e-05 Score=80.10 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=47.3
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-------------CCCcEEEEcCeE----------EEEecCCcCCCcc
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-------------KESGIIRLCGTK----------AYVAQSPWIQSGK 436 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-------------~~~G~i~~~g~~----------~~v~Q~~~~~~~t 436 (1156)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.. ..+.|+.+++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhh
Confidence 45556899999999999999999999999886 44555 34421 1234455566666
Q ss_pred HHHHhhcCCCCCHHHHHHHHHH
Q 037346 437 IEENILFGKEMDRERYERVLEA 458 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~ 458 (1156)
+.+| .+|.+ .+..++++++
T Consensus 91 ~~~n-~YGt~--~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGN-MFGTK--FETVHQIHKQ 109 (197)
T ss_dssp ETTE-EEEEE--HHHHHHHHHT
T ss_pred hhce-ecccc--hhhHHHHHhc
Confidence 6666 35532 3344555443
No 335
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.50 E-value=2.1e-05 Score=88.54 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccc--------------cceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLR--------------NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.+.|+|++|.||. ++..|+ |+++.+.+|+.++|+||+|||||||++.|.+..
T Consensus 132 ~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45889999999984 467888 899999999999999999999999999998865
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=2.5e-05 Score=82.34 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=56.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccC-CCceEE----------EcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHIL----------IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
++..++|.||||||||||++.|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++..|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~ 83 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGN 83 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEccc
Confidence 3455688899999999999999999976 333333 456666666777777655 67778888888777
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~ 1045 (1156)
. ++ .+.+.+.++++.
T Consensus 84 ~-yg--~~~~~i~~~l~~ 98 (208)
T 3tau_A 84 Y-YG--TPLEYVEEKLAA 98 (208)
T ss_dssp E-EE--EEHHHHHHHHHT
T ss_pred c-CC--CcHHHHHHHHHc
Confidence 4 22 124556555554
No 337
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=0.00031 Score=79.74 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
-+++|+++.|.||+|||||||+..+++...+..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48899999999999999999999999887765443
No 338
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.44 E-value=6.7e-05 Score=88.51 Aligned_cols=66 Identities=15% Similarity=0.339 Sum_probs=45.6
Q ss_pred CCCEEEEecCCcCCCH-HHHHHHHHHHHHhc-CCceEEEeecCc-ccccc-cCEEEE-EeCcEEeeecChh
Q 037346 1069 KSKVLVLDEATASVDT-ATDNQIQQTLRQHF-SDCTVVTIAHRI-TSVLD-SAMVLL-LNHGLIKEYDSPT 1134 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~-~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti~~-~D~I~V-l~~G~IvE~G~~~ 1134 (1156)
+++||++||+..-.+. .+...+...+.... .++++|+.+|+. ..+.. .+++.- ++.|.+++.+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8899999999887764 56667777776643 467888899984 33332 223332 5668888887764
No 339
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.44 E-value=0.00011 Score=82.61 Aligned_cols=131 Identities=8% Similarity=0.056 Sum_probs=78.9
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY 452 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~ 452 (1156)
-+.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|++=+ .+.+.+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEESS-----------------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEECC-----------------CCHHHH
Confidence 3467777766999999999999999999999887743221 22 245554422 222222
Q ss_pred -HHHHHH-hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCC
Q 037346 453 -ERVLEA-CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSS 530 (1156)
Q Consensus 453 -~~~~~~-~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~ 530 (1156)
.+++.. .++. +..+..| . ..||+++++|+..|...+.++++++.|+|...++... ...+.+....+
T Consensus 112 ~~R~~~~~~~i~--~~~l~~~------~--~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~--~~i~~l~~~~~ 179 (315)
T 3bh0_A 112 IKRLIVTAGSIN--AQKIKAA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIW--SKTRQTKRKNP 179 (315)
T ss_dssp HHHHHHHHTTCC--HHHHHSC------H--HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHH--HHHHHHHHTSS
T ss_pred HHHHHHHHcCCC--HHHHhcC------C--CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH--HHHHHHHHhcC
Confidence 222221 1221 1111111 0 1399999999999999999999999999875543321 12222223335
Q ss_pred CE--EEEEcc
Q 037346 531 KT--VIYATH 538 (1156)
Q Consensus 531 ~t--vi~vtH 538 (1156)
.. +|+|-|
T Consensus 180 ~~~~lVVID~ 189 (315)
T 3bh0_A 180 GKRVIVMIDY 189 (315)
T ss_dssp SCCEEEEEEC
T ss_pred CCCeEEEEeC
Confidence 45 776655
No 340
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.43 E-value=7.1e-05 Score=84.65 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=73.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcc-cC------CCceEEEcCeeCCCCChHHHh---hcCeeeccccccccccchhc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIV-ES------TAGHILIDGKDISLIGLHDLR---TRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~~~~LR---~~i~~VpQdp~LF~gTIr~N 1027 (1156)
+++.-+.|.|++|||||||+..+..-. .+ ..+.++|+.... ++.+.++ +++++-+++ +.+|
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~~~ 175 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VMNN 175 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hhcc
Confidence 345556788999999999999887653 33 345677876542 2344443 344543332 3356
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccc---cCCCEEEEecCCcCCCHH-------H--HHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL---KKSKVLVLDEATASVDTA-------T--DNQIQQTLR 1095 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALL---r~~~ILiLDEaTS~LD~~-------t--e~~I~~~l~ 1095 (1156)
+...+..+-++..+.++. ++.++ .+++++|+|+.|+-.+.+ + ...+.+.++
T Consensus 176 l~~~~~~~~~~~~~~l~~-----------------l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 176 IYYIRAINTDHQIAIVDD-----------------LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp EEEEECCSHHHHHHHHHH-----------------HHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHH-----------------HHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 644444444444333322 22223 468999999999876432 1 123444433
Q ss_pred Hh---c--CCceEEEeecCc
Q 037346 1096 QH---F--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1096 ~~---~--~~~TvI~IaHrl 1110 (1156)
.+ . .++|||++.|-.
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHhCCEEEEEccee
Confidence 32 2 289999999864
No 341
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.00026 Score=83.72 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=37.7
Q ss_pred cccccCCCEEEEecCCc----------CCCHHHHHHHHHHHHHh-----cCCceEEEeecCccccc-------ccCEEEE
Q 037346 1064 RVLLKKSKVLVLDEATA----------SVDTATDNQIQQTLRQH-----FSDCTVVTIAHRITSVL-------DSAMVLL 1121 (1156)
Q Consensus 1064 RALLr~~~ILiLDEaTS----------~LD~~te~~I~~~l~~~-----~~~~TvI~IaHrl~ti~-------~~D~I~V 1121 (1156)
+|....|.||++||+.+ +.|.+.++.+.+.+... ..+..||..||+.+.+. .+|+.+.
T Consensus 103 ~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~ 182 (476)
T 2ce7_A 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182 (476)
T ss_dssp HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEE
T ss_pred HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEee
Confidence 44445799999999944 56766666666666543 13568888999986543 4666554
Q ss_pred Ee
Q 037346 1122 LN 1123 (1156)
Q Consensus 1122 l~ 1123 (1156)
++
T Consensus 183 i~ 184 (476)
T 2ce7_A 183 VD 184 (476)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.36 E-value=1.7e-05 Score=85.08 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=44.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC------ChHH----HhhcCeeecccccccc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI------GLHD----LRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------~~~~----LR~~i~~VpQdp~LF~ 1021 (1156)
.-++|.|++||||||++++|.++ +|+|.++|.|.... .+.. .++.+++++|++.++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 33578899999999999999998 79999999886532 1211 2567899999987764
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=4.4e-05 Score=80.06 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-----------ccccchh
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-----------FEGTTRS 1026 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-----------F~gTIr~ 1026 (1156)
.++..++|.|+|||||||++++|.+++.|..| +.+ +.....-. ...+..+++++|++.. +..+++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVG 80 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeECC
Confidence 34556789999999999999999999977655 222 22222211 1123347888887643 3444555
Q ss_pred ccCCCCCCCHHHHHHHHHH
Q 037346 1027 NLDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1027 Nl~~~~~~~deei~~al~~ 1045 (1156)
|+ ++ ...+++.++++.
T Consensus 81 ~~-~g--~~~~~i~~~l~~ 96 (207)
T 2j41_A 81 NY-YG--TPVQYVKDTMDE 96 (207)
T ss_dssp EE-EE--EEHHHHHHHHHT
T ss_pred ee-cC--CCHHHHHHHHHc
Confidence 42 11 235677777764
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.32 E-value=7.3e-05 Score=80.10 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=32.0
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
+.+.++|++++|+|++||||||++++|.|. .|+|.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 345679999999999999999999999997 56666654
No 345
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.32 E-value=9.5e-05 Score=77.86 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=27.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.32 E-value=3.1e-05 Score=79.58 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCe--eCCCCChH----HHhhcCeeecccccc-c--c-
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLH----DLRTRLSIIPQDPTM-F--E- 1021 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~i~~~----~LR~~i~~VpQdp~L-F--~- 1021 (1156)
++++...++ ..+|.|+||||||||+.+|.++..+..|...-.+. ++-.-+.. ..+..|.++.|+|.- | .
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 445555555 45888999999999999999998877765433221 11111100 234578999998631 1 0
Q ss_pred --ccchhccCC---------CCCCCHHHHHHHHHHcCCCh
Q 037346 1022 --GTTRSNLDP---------LEEHADEQIWEALDKCQLGD 1050 (1156)
Q Consensus 1022 --gTIr~Nl~~---------~~~~~deei~~al~~~~l~~ 1050 (1156)
-+|+..+.. +.+.+.+++.+.++.+++..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 122222211 12345788999999888753
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=4.6e-05 Score=79.84 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
..++|++++|+|++||||||+++.|.+.+++..|.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 35789999999999999999999999998877776654
No 348
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.28 E-value=0.00073 Score=76.68 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=81.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceE-EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI-LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.||+|||||||+..+++...+..|.+ +||+.+..+ ....+++++.+|+..+.. +.+-
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~-----------~~~~ 124 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQ-----------PDHG 124 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEEC-----------CSSH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhh-----------ccCH
Confidence 3454456779999999999999999988888865 777764432 235567888887654332 2233
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCC-HHH------------HHHHHHH---HHHh--c
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD-TAT------------DNQIQQT---LRQH--F 1098 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD-~~t------------e~~I~~~---l~~~--~ 1098 (1156)
+++.+.++. .+. -.+++++|+|+.++-.. .+- .+.+.+. |... .
T Consensus 125 e~~l~~~~~-----l~~-------------~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 125 EQALEIVDE-----LVR-------------SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp HHHHHHHHH-----HHH-------------TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----Hhh-------------hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333332221 111 03689999999887664 111 1223232 3232 2
Q ss_pred CCceEEEeecCcc---c-------------c-cccCEEEEEeC
Q 037346 1099 SDCTVVTIAHRIT---S-------------V-LDSAMVLLLNH 1124 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~---t-------------i-~~~D~I~Vl~~ 1124 (1156)
.++|||+|.|=-+ . + ..+|-++.++.
T Consensus 187 ~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp SSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred cCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 4789999887521 1 1 24788888875
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.27 E-value=2.7e-05 Score=81.90 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=35.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++|.|++||||||+++.|.+.++ .+.+|+||+++|.+ +|+.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~ 64 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIE 64 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhh
Confidence 57889999999999999999875 37899999999976 5554
No 350
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.23 E-value=0.00066 Score=78.44 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=67.9
Q ss_pred CCe--EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCc
Q 037346 385 HGM--RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462 (1156)
Q Consensus 385 ~g~--~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~ 462 (1156)
.|. .+.|.||+|+|||||++.+.+.+.+..+ ..+.++...+.. +. ...+..+++..+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-----~~~~~i~~~~~~---~~-----------~~~~~~l~~~l~~~ 101 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-----ARFVYINGFIYR---NF-----------TAIIGEIARSLNIP 101 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-----CEEEEEETTTCC---SH-----------HHHHHHHHHHTTCC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-----eeEEEEeCccCC---CH-----------HHHHHHHHHHhCcc
Confidence 456 8999999999999999999998876531 122333321110 10 12233333333211
Q ss_pred hhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c---CCCEEEE
Q 037346 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S---SSKTVIY 535 (1156)
Q Consensus 463 ~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~illlDep~s~lD~~~~~~i~~~~~~--~---~~~tvi~ 535 (1156)
... ...+.++.... +...+ ..+|.++++||+... |......+.+.+.. . .+.++|+
T Consensus 102 -------------~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 102 -------------FPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp -------------CCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred -------------CCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 001 11233332221 11111 245789999999876 88777766654422 2 3668888
Q ss_pred EccCCC
Q 037346 536 ATHQVE 541 (1156)
Q Consensus 536 vtH~~~ 541 (1156)
+||+.+
T Consensus 165 ~~~~~~ 170 (389)
T 1fnn_A 165 VGHNDA 170 (389)
T ss_dssp EESSTH
T ss_pred EECCch
Confidence 999874
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.22 E-value=5.8e-05 Score=84.86 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC 420 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~ 420 (1156)
+++++|++++|++++|+|++|+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467888899999999999999999999999999998877776653
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.18 E-value=3e-05 Score=93.34 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=57.2
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEE-EcCeeCCC-------CCh---HHHhhcCeeeccccccccccchhc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HIL-IDGKDISL-------IGL---HDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------i~~---~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
+..++|.|+||||||||+++|.+.+.|.+| +|. +||.++.. ++. ...++++++|+|+. +..+|
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~~~~~ 443 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----TKNRG 443 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----HHTTC
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----HhcCC
Confidence 344678999999999999999999999987 785 99977642 222 23456789999974 23444
Q ss_pred cCC---CCC--CCHHHHHHHHHHcC
Q 037346 1028 LDP---LEE--HADEQIWEALDKCQ 1047 (1156)
Q Consensus 1028 l~~---~~~--~~deei~~al~~~~ 1047 (1156)
+.. ..+ ...+++.++++..+
T Consensus 444 ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 444 IAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred EEEEecCCccHHHHHHHHHHHHHcC
Confidence 321 111 12456778888776
No 353
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.16 E-value=0.00012 Score=74.49 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=28.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 469999999999999999999999864 6666554
No 354
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.15 E-value=0.0013 Score=74.78 Aligned_cols=133 Identities=10% Similarity=0.146 Sum_probs=72.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-+++|+++.|.||+|||||||+..++.. .++..|. .++.+.|+.-+.. ++.+++.+..+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~---------------~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT---------------FRPDRLRDIADRF 180 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHc
Confidence 5889999999999999999999988875 3322111 1245566654432 1233333333333
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCH-HHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHH-------H-----HHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSG-GQKQRIQIARPLY----QDADIFLLDDPFSPVDDH-------T-----GAH 520 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSg-GqkqRi~lAral~----~~~~illlDep~s~lD~~-------~-----~~~ 520 (1156)
+++.. ++.+ .+-. ..++ -+.+.+..++.+. .+++++++|++++-.+.. . ..+
T Consensus 181 g~~~~~~l~~l------~~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~ 251 (343)
T 1v5w_A 181 NVDHDAVLDNV------LYAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 251 (343)
T ss_dssp TCCHHHHHHTE------EEEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHhce------eEee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHH
Confidence 33211 1110 0000 1122 2335555555555 579999999999876442 1 112
Q ss_pred HHHHHH---hcCCCEEEEEccCC
Q 037346 521 LFKFCW---VSSSKTVIYATHQV 540 (1156)
Q Consensus 521 i~~~~~---~~~~~tvi~vtH~~ 540 (1156)
+...+. ...+.+||++.|-.
T Consensus 252 ~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 252 MLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhCCEEEEEeece
Confidence 222222 23577888888843
No 355
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.12 E-value=0.00043 Score=80.57 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
+++.|++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 46779999999999999999999999999887777543
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.10 E-value=0.00045 Score=77.29 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.6
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc--CCCceEEE
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE--STAGHILI 993 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~--p~~G~I~i 993 (1156)
++|.|+|||||||++++|.+++. |.+|.+.+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 46789999999999999999998 45666444
No 357
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.09 E-value=0.0013 Score=73.18 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
++.-+.|.||+|+||||+++++.+.+.. ...++.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---------~~~~i~~-~~l-------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---------TFLNISA-ASL-------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---------EEEEEES-TTT--------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---------CeEEeeH-HHH--------------------------------
Confidence 5678999999999999999999987531 1111100 000
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
.. ..+ -+++++.|..+++|...+|.++++||+-+.++.
T Consensus 91 ~~-------~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 TS-------KYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp SS-------SSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hh-------ccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 00 001 146888888888888899999999999877653
No 358
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.08 E-value=0.00011 Score=88.64 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=35.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-EEE-EcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-IIR-LCG 421 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~i~-~~g 421 (1156)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 665
No 359
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.07 E-value=0.0014 Score=73.96 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CC-CcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KE-SGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~-~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-+++|+++.|.||+|||||||+..++.... +. .|. .++.+.|+.-+.. ++.++..+.++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~---------------~~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT---------------FRWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHh
Confidence 589999999999999999999998886542 21 110 1245566654422 2233333334444
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCHH-HHHHHHHHHhhc---cCCCeeeeeCCCCCcCHH--------HH----HHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSGG-QKQRIQIARPLY---QDADIFLLDDPFSPVDDH--------TG----AHL 521 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSgG-qkqRi~lAral~---~~~~illlDep~s~lD~~--------~~----~~i 521 (1156)
+.+.+ ++.+ .+.+ ..++. +.+.+..++.+. .+++++++|+.++-.+.. .+ .++
T Consensus 166 g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~ 236 (324)
T 2z43_A 166 GLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236 (324)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHH
T ss_pred CCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHH
Confidence 33211 1100 0111 12333 346677777777 679999999998876431 11 122
Q ss_pred HHHHH---hcCCCEEEEEccCC
Q 037346 522 FKFCW---VSSSKTVIYATHQV 540 (1156)
Q Consensus 522 ~~~~~---~~~~~tvi~vtH~~ 540 (1156)
...+. ...+.+||++.|-.
T Consensus 237 l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 237 LHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHhCCEEEEEccee
Confidence 22221 13478888887743
No 360
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.07 E-value=0.00019 Score=82.27 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCC-ceeeCCCCCCHHHHHHHHhhccc-----------CCCceEEEcCeeCCCCChHHHhhcCeeecccccc----cccc
Q 037346 960 NLP-LVLRGRTGSGKSTLIQTLFRIVE-----------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM----FEGT 1023 (1156)
Q Consensus 960 ~~~-~vL~G~SGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L----F~gT 1023 (1156)
+.+ ++|.|++|||||||++.|.+... |..|.|.++|.++. +-...|++.|.|.- |..|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 345 67999999999999999999765 67899999997652 23345666664421 3223
Q ss_pred ch-----hcc----CCCCCC--CHHH---HHHHHHHcCCChH--------HHhhcCCccc---cc----ccc-ccCCCEE
Q 037346 1024 TR-----SNL----DPLEEH--ADEQ---IWEALDKCQLGDE--------VRKKKGKLDS---QG----RVL-LKKSKVL 1073 (1156)
Q Consensus 1024 Ir-----~Nl----~~~~~~--~dee---i~~al~~~~l~~~--------i~~lp~gl~s---~A----RAL-Lr~~~IL 1073 (1156)
+. +++ |..++. .+++ +.+.++..++.+. ++.++.+... .+ +++ ..++++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22 121 222222 1222 3556666554321 1111111100 01 344 333444
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHh
Q 037346 1074 VLDEATASVDTATDNQIQQTLRQH 1097 (1156)
Q Consensus 1074 iLDEaTS~LD~~te~~I~~~l~~~ 1097 (1156)
+|||++|.+.-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888887664
No 361
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.06 E-value=6.7e-05 Score=84.35 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh----HHH-----hhcCeee-ccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL----HDL-----RTRLSII-PQD 1016 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~L-----R~~i~~V-pQd 1016 (1156)
++..+++.|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 334457889999999999999999999999999999999866442 334 4567777 454
No 362
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.06 E-value=0.00067 Score=78.36 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=65.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCC--ceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC---CCCCCCHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTA--GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD---PLEEHADE 1037 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~---~~~~~~de 1037 (1156)
+.|.|++|+|||||++.+.+...+.. .-+.++..+.. +...+-+.+ .+.+. +....+.+
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l--------------~~~l~~~~~~~~~~~~ 110 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR--NFTAIIGEI--------------ARSLNIPFPRRGLSRD 110 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC--SHHHHHHHH--------------HHHTTCCCCSSCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC--CHHHHHHHH--------------HHHhCccCCCCCCCHH
Confidence 57889999999999999999987653 34555532221 111111111 00010 11112233
Q ss_pred HHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc----CCceEEEeecCcc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF----SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~----~~~TvI~IaHrl~ 1111 (1156)
++.+.+.. .+.. ..+|.||+|||+... |......+.+.+.+.. .+.++|+++|+..
T Consensus 111 ~~~~~l~~-----~l~~------------~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 111 EFLALLVE-----HLRE------------RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHH-----HHHH------------TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHH-----HHhh------------cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 33332211 1110 235789999999876 8777666666664432 3678899999874
No 363
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.97 E-value=0.00022 Score=72.58 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=38.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh-cCeeeccccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT-RLSIIPQDPT 1018 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~-~i~~VpQdp~ 1018 (1156)
.++|.|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+++++|++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 35788999999999999999976 889999877753 223333 4677777643
No 364
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.97 E-value=2.7e-05 Score=84.83 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=51.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cc-cccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MF-EGTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF-~gTIr~Nl~ 1029 (1156)
+.|.||+|||||||+++|.+... .|.|.++|.++.+......++.++.++|++. .+ .-++.||++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 67889999999999999999875 8999999988766666666777888888864 33 235677774
No 365
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.95 E-value=0.0002 Score=81.52 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcc-cC------CCceEEEcCeeCCCCChHHHhh---cCeeeccccccccccchhcc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIV-ES------TAGHILIDGKDISLIGLHDLRT---RLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~~~~LR~---~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
++.-+.|.|++|||||||+..++.-. .| ..+.++||.... ++.+.+++ ++++-++ .+.+|+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l~~l 191 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVLDNV 191 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHHHTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHHhce
Confidence 34445678999999999999888752 22 345678887652 33444433 3443222 123455
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHH-------HH--HHHHHH---HHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTA-------TD--NQIQQT---LRQ 1096 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~-------te--~~I~~~---l~~ 1096 (1156)
......+-+++.+.++.+ ...+.+ ...+++++|+|+.|+-.+.+ .+ ..+.+. |.+
T Consensus 192 ~~~~~~~~e~~~~ll~~l--~~~i~~-----------~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 192 LYARAYTSEHQMELLDYV--AAKFHE-----------EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp EEEECCSTTHHHHHHHHH--HHHHHH-----------SCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHH--HHHHHh-----------cCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 333333323333332211 111211 11468999999999876543 11 123333 333
Q ss_pred hc--CCceEEEeecCc
Q 037346 1097 HF--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl 1110 (1156)
.. .++|||++.|--
T Consensus 259 la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 259 ISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHTCEEEEEECC-
T ss_pred HHHHhCCEEEEEeece
Confidence 22 378999999853
No 366
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.93 E-value=0.0037 Score=66.95 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776555
No 367
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.92 E-value=0.0014 Score=76.19 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
++.+++++|++||||||++..|++.+.+..++|. ++.-++. .....+ ......+..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl------lv~~D~~--r~~a~e-----------qL~~~~~~~gv~~- 155 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG------LVAADVY--RPAAYD-----------QLLQLGNQIGVQV- 155 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE------EEEECCS--CHHHHH-----------HHHHHHHTTTCCE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE------EEecCcc--chhHHH-----------HHHHHHHhcCCce-
Confidence 5789999999999999999999998877655554 3333321 111111 1111111112110
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC-CC--cCHHHHHHHHH
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF-SP--VDDHTGAHLFK 523 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~-s~--lD~~~~~~i~~ 523 (1156)
.... .....-.-.+-+++++...++|++|+|+|- .+ .|+....++.+
T Consensus 156 ----------~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 156 ----------YGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp ----------ECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred ----------eecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 0000 111222333456777777899999999986 44 67765555543
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.92 E-value=0.00047 Score=68.36 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=25.0
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4456666655 99999999999999999986
No 369
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0007 Score=76.98 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=59.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
+.|.||+|+||||+++++.+...+..|.+.+.+.+.++ ...-+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~ir~~ 96 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD--------------------------------DRGIDVVRNQ 96 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS--------------------------------CCSHHHHHTH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc--------------------------------cccHHHHHHH
Confidence 57889999999999999999987665543222221111 1112233322
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcc
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT 1111 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1111 (1156)
++ ++.+.. ..+-.+++|+++||+- .+..+....+.+.+++...++.+|+++....
T Consensus 97 i~-----~~~~~~--------~~~~~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 97 IK-----DFASTR--------QIFSKGFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp HH-----HHHHBC--------CSSSCSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HH-----HHHhhc--------ccCCCCceEEEEeCCC-CCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 21 111110 0111357999999985 3455666667777776555555666666543
No 370
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.85 E-value=0.00066 Score=78.15 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
..+..+.|.||+|+|||||++.+.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887554
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.84 E-value=0.0014 Score=83.08 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=38.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQd 1016 (1156)
.++..+.|.||+|+|||||+++|.+... .+-|.+++-++.+--..+..+.+..+.|.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 3455578899999999999999999875 45677777776543333333344444544
No 372
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.81 E-value=0.0004 Score=70.44 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
.|++++|+|++||||||+++.|.+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997653
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.79 E-value=0.00021 Score=81.36 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=39.8
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR 418 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~ 418 (1156)
.+++++++.+++|.+++|+|++|+|||||++.|+|.+.+..|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 578899999999999999999999999999999999877665543
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.79 E-value=0.00035 Score=73.06 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH 1004 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1004 (1156)
++|.|++||||||+++.|.+++.+.+|.|.+.|.|....+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 578899999999999999999999999998887776555443
No 375
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.75 E-value=0.0013 Score=74.06 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHH
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~ 1040 (1156)
.++.|.|++|+|||||++++.+........+ .+++-+. . .+++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~-------------------~~i~~~~------~-----------~~~~~ 81 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV-------------------IYSSADD------F-----------AQAMV 81 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCE-------------------EEEEHHH------H-----------HHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEE-------------------EEEEHHH------H-----------HHHHH
Confidence 3567889999999999999998775432221 1111000 0 12233
Q ss_pred HHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcC-CCHHHHHHHHHHHHHhc-CCceEEEeecC
Q 037346 1041 EALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATAS-VDTATDNQIQQTLRQHF-SDCTVVTIAHR 1109 (1156)
Q Consensus 1041 ~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~-LD~~te~~I~~~l~~~~-~~~TvI~IaHr 1109 (1156)
.+++......+. ..++++.+|++||+..- -|..+...+...+.... .++.+|+.+++
T Consensus 82 ~~~~~~~~~~~~------------~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 82 EHLKKGTINEFR------------NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHTCHHHHH------------HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHcCcHHHHH------------HHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 333322222221 12356899999999763 34466667777776543 35566666654
No 376
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.75 E-value=0.00061 Score=80.29 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.0
Q ss_pred CCCeeeeeCCCCCcCH-HHHHHHHHHHH--hcCCCEEEEEccCC
Q 037346 500 DADIFLLDDPFSPVDD-HTGAHLFKFCW--VSSSKTVIYATHQV 540 (1156)
Q Consensus 500 ~~~illlDep~s~lD~-~~~~~i~~~~~--~~~~~tvi~vtH~~ 540 (1156)
++++|++||+..-.+. .+++.++..+. ...|+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999877764 45555655432 24578899999974
No 377
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.72 E-value=0.0014 Score=69.76 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=34.5
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.++.+|++||+-. +|.+....+.+.+.+...+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999876 78888778888887654567788888886544
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.72 E-value=0.00031 Score=74.87 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred ceeeCCCCCCHHHHHHHHh---hcccCCCceE--------EEcCeeCCCCC-hHHHhhcCeeec------cccccccccc
Q 037346 963 LVLRGRTGSGKSTLIQTLF---RIVESTAGHI--------LIDGKDISLIG-LHDLRTRLSIIP------QDPTMFEGTT 1024 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I--------~idG~di~~i~-~~~LR~~i~~Vp------Qdp~LF~gTI 1024 (1156)
++|.|++||||||+.+.|. |+...+.|.+ .-.|+++.+.. +..+.+.+.+.. |+.+|+...|
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v 91 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDV 91 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeeh
Confidence 5678999999999999998 5555566766 34577776653 556666777766 4556666667
Q ss_pred hhccC
Q 037346 1025 RSNLD 1029 (1156)
Q Consensus 1025 r~Nl~ 1029 (1156)
.+||.
T Consensus 92 ~~~ir 96 (233)
T 3r20_A 92 SSEIR 96 (233)
T ss_dssp TTGGG
T ss_pred hhhhc
Confidence 66664
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.72 E-value=0.00059 Score=72.89 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=30.1
Q ss_pred ccccceEEee---CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE
Q 037346 375 TLRNINLKVF---HGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417 (1156)
Q Consensus 375 ~l~~i~l~i~---~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i 417 (1156)
-|.+.|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3566666665 8999999999999999999999998887 5544
No 380
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.00063 Score=70.94 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCce
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~ 990 (1156)
.++.|.|++|+|||||++++........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~ 84 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 346788999999999999999877654333
No 381
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.70 E-value=0.0002 Score=85.18 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccc-cchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEG-TTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~g-TIr~Nl~ 1029 (1156)
+.|.||+|+|||||+++|.+... .|.|.++|.++.+......++++..++|++. .+.+ .+-|+|+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 67889999999999999999875 7899999999887766667777888888864 2322 5667775
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.68 E-value=0.0004 Score=71.03 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
++|++++|+|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999987755 45
No 383
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.63 E-value=0.00091 Score=84.79 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.4
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
+..+.|.|++|||||||+++|.+.+.+. -|.++|
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~ 271 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAF--FFLING 271 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEc
Confidence 4456889999999999999999987542 355554
No 384
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.62 E-value=0.00074 Score=72.39 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=65.3
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCC-CccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-SGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~-~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
+.+|+.++++||+||||||++..++.......|. ......+.+.|... ..++.+|+....... +-..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~------~~~~~g~ 143 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE------PGKSCGY 143 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC------TTSSEEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc------cCceEEE
Confidence 4578999999999999999887765432211221 12335555666432 225555553211100 0000000
Q ss_pred chhhhhCCCCCccccccC---CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHH
Q 037346 462 KKDLEVLPFGDQTIIGER---GINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCW 526 (1156)
Q Consensus 462 ~~~~~~~~~g~~t~v~~~---g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~ 526 (1156)
... .+....+. ..-.+.|+-.+.. +.-+.+.+++++||+=. ++|........+.+.
T Consensus 144 ~~~-------~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 144 SVR-------FESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EET-------TEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred eec-------hhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 000 00000000 1123567766664 33688999999999976 577765543444443
No 385
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.0018 Score=74.18 Aligned_cols=45 Identities=7% Similarity=0.197 Sum_probs=36.6
Q ss_pred cCCCEEEEe-cCCcCCCHHHHHHHHHHHHHhcCCceEEEee--cCccc
Q 037346 1068 KKSKVLVLD-EATASVDTATDNQIQQTLRQHFSDCTVVTIA--HRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLD-EaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia--Hrl~t 1112 (1156)
.++-++++| ++++++|.+....+.+.+.+...++++|+|. |++..
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 456689999 9999999998888888787766688999999 77643
No 386
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.0014 Score=75.31 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=26.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCC----ceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTA----GHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~----G~I~idG 995 (1156)
..++|.|++|+|||||++.+.+...+.. ..+.+++
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3567889999999999999999886543 3455554
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.62 E-value=0.00046 Score=72.24 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEeecCcccc---cccCEEEEEeC
Q 037346 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV---LDSAMVLLLNH 1124 (1156)
Q Consensus 1081 ~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti---~~~D~I~Vl~~ 1124 (1156)
.+++...+.+.+.+... .+.++|+-+|.+... ..||.+++++-
T Consensus 87 ~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 87 LLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp HHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 45666666666666543 355788778877553 56999999974
No 388
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.00072 Score=70.44 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=24.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.-..+||+|...++..++|.|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34678999999888888999999999999999999876
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.58 E-value=0.00032 Score=71.77 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=31.5
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCeeCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGKDIS 999 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~ 999 (1156)
+..++|.|++||||||+++.|.+.+.+ .| .|.+||..++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 334678899999999999999999876 67 7777876554
No 390
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.55 E-value=0.0017 Score=73.19 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
.+..+.|.||+|+|||||++.|.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876543
No 391
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.54 E-value=0.0095 Score=67.73 Aligned_cols=140 Identities=18% Similarity=0.157 Sum_probs=75.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.|++|||||||+..++.-.... ...++||..... +.. .-+++++-+ +|+....+.+.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~--~~~-~a~~~g~~~-----------~~l~i~~~~~~ 126 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--DPI-YARKLGVDI-----------DNLLCSQPDTG 126 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH-HHHHTTCCG-----------GGCEEECCSSH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc--cHH-HHHHcCCCh-----------hheeeeCCCCH
Confidence 455556677999999999998877654333 335667764321 111 122333322 23322222333
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccc--cCCCEEEEecCCcCCC-HH------------HHHHHHHHHHHh----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLL--KKSKVLVLDEATASVD-TA------------TDNQIQQTLRQH---- 1097 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALL--r~~~ILiLDEaTS~LD-~~------------te~~I~~~l~~~---- 1097 (1156)
+++.+.++ .+. .+++++|+|++++-.. .+ ..+.+.+.++++
T Consensus 127 e~~~~~~~--------------------~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a 186 (356)
T 1u94_A 127 EQALEICD--------------------ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186 (356)
T ss_dssp HHHHHHHH--------------------HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------HHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 44433332 121 3689999999998763 21 112334444433
Q ss_pred -cCCceEEEeecCccc----------------c-cccCEEEEEeCcEEeeec
Q 037346 1098 -FSDCTVVTIAHRITS----------------V-LDSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t----------------i-~~~D~I~Vl~~G~IvE~G 1131 (1156)
..++|||++.|--.. + ..+|-++.+...++...|
T Consensus 187 ~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 187 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp HHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred HHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 138999999985322 1 247888888766654333
No 392
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.53 E-value=0.0021 Score=68.54 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVEST 987 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~ 987 (1156)
+.++.|.|++|+|||||++.+.+.....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456788999999999999998876543
No 393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.52 E-value=0.0061 Score=65.29 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
++|.|++|+|||||++.|+|-..+.+|
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 578899999999999999997666555
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.49 E-value=0.00047 Score=72.60 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.6
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc--EEEEc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG--IIRLC 420 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G--~i~~~ 420 (1156)
+.+++|.+++|+|++||||||+.+.|.+.++|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 55788999999999999999999999998877777 55554
No 395
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.49 E-value=0.00087 Score=69.69 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred EEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 365 f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
++|+. -..+++++++..++++ ++++|++|+|||||++.+.+
T Consensus 7 ~~~~~--~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSG--FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHH--HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 44542 3468999999988874 78999999999999999987
No 396
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.49 E-value=0.0073 Score=71.20 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=76.4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH-
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY- 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~- 452 (1156)
+.|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++=+ .+.+.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE-----------------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLE-----------------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESS-----------------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECC-----------------CCHHHHH
Confidence 456666656899999999999999999999888765432222 234444322 222222
Q ss_pred HHHHH-HhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 453 ERVLE-ACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 453 ~~~~~-~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
.+.+. ..++. ...+. . ..|+..+.+|+.-|...+.+.++++.|+|...++.. ......+....+.
T Consensus 246 ~R~~~~~~~i~--~~~l~---------~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~ 311 (444)
T 2q6t_A 246 LRMMCSEARID--MNRVR---------L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQV 311 (444)
T ss_dssp HHHHHHHTTCC--TTTCC---------G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCC
T ss_pred HHHHHHHcCCC--HHHHh---------C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCC
Confidence 22221 22221 11111 1 269999999999888888888999988875444322 2222223233455
Q ss_pred EEEEEcc
Q 037346 532 TVIYATH 538 (1156)
Q Consensus 532 tvi~vtH 538 (1156)
.+|+|-+
T Consensus 312 ~lIvID~ 318 (444)
T 2q6t_A 312 GLIIIDY 318 (444)
T ss_dssp CEEEEEC
T ss_pred CEEEEcC
Confidence 5665543
No 397
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0014 Score=74.54 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
+++||++|| ...++.+....+.+.+++...+..+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 568999999 56788888888888888765566677788776543
No 398
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.46 E-value=0.00075 Score=76.94 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
+++..++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 357799999999999999999999988877665543
No 399
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.45 E-value=0.004 Score=66.62 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=24.2
Q ss_pred cccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhcCCceEE
Q 037346 1066 LLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHFSDCTVV 1104 (1156)
Q Consensus 1066 LLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~~~~TvI 1104 (1156)
-+++-+++|+|||-. ++|......+.+.+.....++.+|
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 212 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIV 212 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEE
Confidence 367889999999976 566666533444444444444333
No 400
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.44 E-value=0.0011 Score=78.20 Aligned_cols=59 Identities=22% Similarity=0.477 Sum_probs=38.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc------------cCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV------------ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~------------~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
++|.|++|+|||||++.|.|.. ++.+|.+.++|.++.-++..-+|+..++.+|....|.
T Consensus 183 vaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 5899999999999999999984 3778999999997765565556666666667655553
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.0037 Score=67.74 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=26.0
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCee
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKD 997 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 997 (1156)
.+.|.|++|+|||||+++|.+..... -+.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 36788999999999999999987532 35555544
No 402
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.43 E-value=0.00072 Score=70.77 Aligned_cols=66 Identities=26% Similarity=0.311 Sum_probs=41.8
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccC-CCceE----------EEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHI----------LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
++..++|.|+||||||||++.|...++. ..+.+ .+||.+..-++.+.+++.+ .|..+++.+....|
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 87 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKYANN 87 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHhCCC
Confidence 4556788999999999999999987642 12211 2356665556666666542 45555554444444
No 403
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.42 E-value=0.00058 Score=82.65 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=41.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+++++++++ +|+.++++||+|||||||+++|.+.+.+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999988777776554
No 404
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.41 E-value=0.00031 Score=80.54 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=43.0
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L 1019 (1156)
++++++..+++..++|.||+|||||||+++|.+.+ +|.+..- +. +.+.++..++++||...+
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCE
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHH
Confidence 34445555566667889999999999999999964 6777651 11 112334458899998765
No 405
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.36 E-value=0.0071 Score=59.33 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecC
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHr 1109 (1156)
+..+|++||.- .++.+....+.+.+.....+..+|..|.+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999995 67888877777777544344555555553
No 406
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.33 E-value=0.0027 Score=70.73 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.++++..+.|.||+|+|||||+++|.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999999764
No 407
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.30 E-value=0.0031 Score=79.45 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.8
Q ss_pred ccccccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhcCC-ceEEE-eecCccccc
Q 037346 1063 GRVLLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHFSD-CTVVT-IAHRITSVL 1114 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~~~-~TvI~-IaHrl~ti~ 1114 (1156)
+++++.++++||+|||+. ++|.+.-..+.+.+....++ +++++ .||..+.+.
T Consensus 202 ~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp HSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred hCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 356788999999999997 89987766666666555544 45555 478765543
No 408
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.28 E-value=0.0028 Score=73.55 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL 1003 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1003 (1156)
..+++.|++||||||++..|.+.+.+.+|+|.+.+.|+..-..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 3356779999999999999999999999999999888876443
No 409
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.25 E-value=0.0022 Score=66.97 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.7
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
.+.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666654 99999999999999999885
No 410
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.23 E-value=0.0047 Score=62.40 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.20 E-value=0.0028 Score=65.30 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=20.7
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678999988877 679999999999999999997
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.16 E-value=0.0094 Score=66.41 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.9
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
++.|.|++|+||||++++|.+...+.+|.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 457889999999999999999988777654
No 413
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0023 Score=65.67 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.4
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
No 414
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.0097 Score=65.43 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.6
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++++.-+.|.||+|+|||||++++++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999875
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.12 E-value=0.0016 Score=70.21 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=22.2
Q ss_pred eEEEEEE-EEEE-c-------------C---CCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 947 EVNIRHL-QVRY-A-------------P---NLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 947 ~I~~~~V-sf~Y-~-------------~---~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.++++|| +++| . + +..++|.|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 9998 2 3 5567888999999999999999855
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.08 E-value=0.0042 Score=66.08 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
++..+.|.||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999876643
No 417
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.03 E-value=0.03 Score=63.63 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.8
Q ss_pred CccccceEE---eeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 374 PTLRNINLK---VFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 374 ~~l~~i~l~---i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.|+.+ +. +++|+++.|.|++|||||||...++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446555 33 88999999999999999999988876543
No 418
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.02 E-value=0.0021 Score=67.14 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 419
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.98 E-value=0.0019 Score=73.50 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI 1001 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 1001 (1156)
++|.|++|||||||++.|.+...+.+|+|.|.+.|..+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 578899999999999999999999999999988877653
No 420
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.97 E-value=0.012 Score=63.29 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++|+|++|+|||||++.|+|.-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998654
No 421
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.97 E-value=0.0006 Score=71.01 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=36.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh------cccCCCceEEEcCe--eCCCCCh--------HHHhhcCeeeccccccccccchh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR------IVESTAGHILIDGK--DISLIGL--------HDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r------l~~p~~G~I~idG~--di~~i~~--------~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
++|.|++||||||+++.|.+ +.+|..|...++.. |-...+. ..+++....+.|+.++++.++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~~ 82 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLLE 82 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTTT
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccch
Confidence 47889999999999999998 34554443322211 1111110 11233345667777888888877
Q ss_pred ccC
Q 037346 1027 NLD 1029 (1156)
Q Consensus 1027 Nl~ 1029 (1156)
|+.
T Consensus 83 ~~~ 85 (205)
T 2jaq_A 83 DPI 85 (205)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 422
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.96 E-value=0.0083 Score=65.97 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.|++|+|||||++++.+..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999998865
No 423
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.96 E-value=0.0019 Score=74.99 Aligned_cols=42 Identities=21% Similarity=0.048 Sum_probs=36.9
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC 420 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~ 420 (1156)
++++++ +|++++++|++||||||++..|++.+.+..|+|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567777 899999999999999999999999999887777653
No 424
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.92 E-value=0.0019 Score=66.37 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=30.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i 417 (1156)
..++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999998877655544
No 425
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.91 E-value=0.0034 Score=71.96 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=24.7
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+..|..++|||++|+|||||++.|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
No 426
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.87 E-value=0.0037 Score=63.10 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=25.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
..++|.|++||||||++++|.+.+.+ +.+|+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 34688999999999999999998754 56765
No 427
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.84 E-value=0.0017 Score=71.99 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=35.0
Q ss_pred cc-ceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 377 RN-INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 377 ~~-i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 777766 9999999999999999999999998876555543
No 428
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.84 E-value=0.0037 Score=71.56 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=31.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh--cccCCCceEEEcCe
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR--IVESTAGHILIDGK 996 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p~~G~I~idG~ 996 (1156)
.++++++..+ .+++.|++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 3556655543 478889999999999999999 77777776654443
No 429
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.79 E-value=0.0034 Score=66.88 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=30.2
Q ss_pred eEEEEEEEEEEc---CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 947 EVNIRHLQVRYA---PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~---~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
.+.+.++++.+. ++.-+++.|++||||||+++.|...+.+ .+.+....
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 356666666554 4445678899999999999999999988 67776543
No 430
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.77 E-value=0.0092 Score=70.20 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC------------CCCcEEEEcCe
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP------------KESGIIRLCGT 422 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~------------~~~G~i~~~g~ 422 (1156)
-.++|+|++|+|||||++.|+|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 3799999999999999999999853 55677777775
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.75 E-value=0.021 Score=63.15 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
..+.|.||+|+||||+++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 346788999999999999999865
No 432
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.74 E-value=0.0088 Score=70.77 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCC-CCcCHHHHHHHHHHHHhcCCCEEEEEccCCC
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPF-SPVDDHTGAHLFKFCWVSSSKTVIYATHQVE 541 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~-s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~ 541 (1156)
.|++-...+...+.++|++|+.-.. .++.... .++.+.+ ...++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l-~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL-YRTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH-TTCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH-HHcCCCEEEEEECcc
Confidence 4888888899999999987775443 3344443 3454443 345778888877654
No 433
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.72 E-value=0.0014 Score=75.13 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
+.+.+.|++..|. .+.++++++|+| +|+|++|+|||||++.|.|.-.+..|.
T Consensus 16 ~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588888888875 346789999866 999999999999999999876554443
No 434
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.69 E-value=0.0093 Score=70.08 Aligned_cols=130 Identities=8% Similarity=0.031 Sum_probs=72.9
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
-|+.+.=-+++|+++.|.|++|+|||||+.-++...-.. | ..+.|++=+- + .++-..+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-----~~vl~fSlEm-----s-----------~~ql~~R 243 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-----DVVNLHSLEM-----G-----------KKENIKR 243 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-----CEEEEECSSS-----C-----------TTHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-----CEEEEEECCC-----C-----------HHHHHHH
Confidence 455554458999999999999999999988776533211 2 2455554321 0 0112222
Q ss_pred HHH-HhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCE-
Q 037346 455 VLE-ACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT- 532 (1156)
Q Consensus 455 ~~~-~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~t- 532 (1156)
.+. ..++. +..+..| . ..|+..+.+|+.-|...+.+.++++.|+|. ++...-....+.+....+..
T Consensus 244 ~~~~~~~i~--~~~l~~g------~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~ 311 (444)
T 3bgw_A 244 LIVTAGSIN--AQKIKAA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKR 311 (444)
T ss_dssp HHHHHSCCC--HHHHHHT------G--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHcCCC--HHHHhcc------c--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 222 12221 1111011 0 127888889998888888888999998874 44433222223332333444
Q ss_pred -EEEEcc
Q 037346 533 -VIYATH 538 (1156)
Q Consensus 533 -vi~vtH 538 (1156)
+|+|-+
T Consensus 312 ~lIVID~ 318 (444)
T 3bgw_A 312 VIVMIDY 318 (444)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 666544
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.69 E-value=0.013 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
No 436
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.036 Score=57.72 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=31.7
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.++.+|++||+- .++.+....+.+.+.+...+..+|+++.+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 467899999975 46777777788888765555667777776543
No 437
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.66 E-value=0.002 Score=67.79 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=30.2
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCe
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGK 996 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~ 996 (1156)
++|.|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 578899999999999999999988888 8888853
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.64 E-value=0.011 Score=65.95 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
...+.++||+|+||||++++|.+.+.+..|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3578999999999999999999988766553
No 439
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.61 E-value=0.0035 Score=75.81 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
+..+.|.||+|+|||||+++|.+...+..|+|.++|..-..--....|+.++..+|..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 3346788999999999999999999999999998885432212223345566666544
No 440
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.53 E-value=0.006 Score=68.64 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.8
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.-+.|.|++|||||||+.-+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3454456779999999999988875
No 441
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.46 E-value=0.0043 Score=67.17 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=29.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
..++|.++.|+|++||||||+.+.|.+.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 456778999999999999999999998764 23444443
No 442
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.45 E-value=0.035 Score=62.25 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=25.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
-+++|+++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888753
No 443
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.011 Score=60.10 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 444
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.43 E-value=0.0057 Score=63.62 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 445
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.43 E-value=0.015 Score=61.29 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=34.0
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCc-----------ccccccCEEEEEe
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI-----------TSVLDSAMVLLLN 1123 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl-----------~ti~~~D~I~Vl~ 1123 (1156)
+++++++||+.- ++.+.-+.+ ..|.+ .+.+||++.|+. ..+.-||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999974 665533333 23333 388999999942 3344688888764
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.41 E-value=0.044 Score=60.87 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=20.8
Q ss_pred CceeeCCCCCCHHHHHHHHhhccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++.|.|++|+||||+++.+.+.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999888764
No 447
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.41 E-value=0.0057 Score=68.07 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999973
No 448
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.36 E-value=0.0052 Score=62.39 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
..++|+|++|||||||++.|++.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.35 E-value=0.027 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
..+.|.||+|+|||||++++.+... .+-+.+++
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 3467889999999999999998764 45565554
No 450
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.33 E-value=0.015 Score=68.47 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=84.3
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eE-EEcCeeCCCCChHHHhhcCe----eecccccccccc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HI-LIDGKDISLIGLHDLRTRLS----IIPQDPTMFEGT 1023 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~i~~~~LR~~i~----~VpQdp~LF~gT 1023 (1156)
++++.-..+++.-++|.||+|+||||++.-++.-.-...| .+ ++.. +.+.+++..++- -|+.+ .
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~------~ 259 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMN------R 259 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTT------T
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHH------H
Confidence 3444333456666678899999999999988876643333 33 3433 356666666531 12211 1
Q ss_pred chhccCCCCCCCHHH---HHHHHHHcCCC-hHHHhhcCCcc-----ccccccc--cCCCEEEEecCCcCCCH------HH
Q 037346 1024 TRSNLDPLEEHADEQ---IWEALDKCQLG-DEVRKKKGKLD-----SQGRVLL--KKSKVLVLDEATASVDT------AT 1086 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~dee---i~~al~~~~l~-~~i~~lp~gl~-----s~ARALL--r~~~ILiLDEaTS~LD~------~t 1086 (1156)
++. +..++++ +.++++...-. -++.. +.++. ..+|.+. .+++++|+|..+.-.+. ++
T Consensus 260 l~~-----g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~ 333 (444)
T 2q6t_A 260 VRL-----GQLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGEN 333 (444)
T ss_dssp CCG-----GGCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------C
T ss_pred HhC-----CCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCC
Confidence 111 1234444 33333322111 11111 11111 1145554 36999999999865433 12
Q ss_pred -H---HHHHHHHHHhc--CCceEEEeecC-------------cc-------cccccCEEEEEeC
Q 037346 1087 -D---NQIQQTLRQHF--SDCTVVTIAHR-------------IT-------SVLDSAMVLLLNH 1124 (1156)
Q Consensus 1087 -e---~~I~~~l~~~~--~~~TvI~IaHr-------------l~-------ti~~~D~I~Vl~~ 1124 (1156)
. ..+.+.|+.+. .+++||+++|= ++ .-.+||.|+.|..
T Consensus 334 r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 334 RQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1 23444454433 28999999981 11 1236999999953
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.27 E-value=0.0086 Score=61.10 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
.++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997544
No 452
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.20 E-value=0.0036 Score=70.34 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.8
Q ss_pred CccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCC
Q 037346 374 PTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367888899999998 99999999999999999997653
No 453
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.13 E-value=0.0096 Score=60.80 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+|.+++|+|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 454
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.10 E-value=0.05 Score=62.05 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=32.1
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.+++|+++||+- .++.+....+.+.+++...+..+|.++++...
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 367899999975 46777777888888765445567777777653
No 455
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.03 E-value=0.024 Score=62.78 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
-+++|..+.|.||.|||||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998754
No 456
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.00 E-value=0.01 Score=60.19 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=27.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCC---CceEEEcCee
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVEST---AGHILIDGKD 997 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~---~G~I~idG~d 997 (1156)
+++.|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4677999999999999999987644 3778887754
No 457
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.99 E-value=0.0091 Score=62.04 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
No 458
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.95 E-value=0.025 Score=64.81 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 459
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.93 E-value=0.021 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.|.||.|+|||||++.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999987654
No 460
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.92 E-value=0.11 Score=59.23 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=71.3
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHh-hcCeeeccccccccccchhccCCCCCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLR-TRLSIIPQDPTMFEGTTRSNLDPLEEHA 1035 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR-~~i~~VpQdp~LF~gTIr~Nl~~~~~~~ 1035 (1156)
+++.-+.|.|++|+|||||+..+..-.....|. ++||... +.+.++ +++++=+ +|+....+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~----s~~~~~a~~~g~d~-----------~~l~i~~~~~ 136 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH----ALDPVYARALGVNT-----------DELLVSQPDN 136 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC----CCCHHHHHHTTCCG-----------GGCEEECCSS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC----ChhHHHHHHcCCCH-----------HHceeecCCc
Confidence 445555677999999999998776544323333 4555432 222222 2333321 2222222233
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCC---H----------HHHHHHHHHHHHh-----
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD---T----------ATDNQIQQTLRQH----- 1097 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD---~----------~te~~I~~~l~~~----- 1097 (1156)
-+++.+.++.. + | -.+++++|+|..++-.- . ..++.+.+.++++
T Consensus 137 ~e~~l~~l~~l-----~-----------~--~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~ 198 (366)
T 1xp8_A 137 GEQALEIMELL-----V-----------R--SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS 198 (366)
T ss_dssp HHHHHHHHHHH-----H-----------T--TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----H-----------h--cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34443333211 1 0 02579999999987541 1 1123455555554
Q ss_pred cCCceEEEeecCcccc-----------------cccCEEEEEeCcE
Q 037346 1098 FSDCTVVTIAHRITSV-----------------LDSAMVLLLNHGL 1126 (1156)
Q Consensus 1098 ~~~~TvI~IaHrl~ti-----------------~~~D~I~Vl~~G~ 1126 (1156)
..++|||++.|=-..+ ..||.++.+..++
T Consensus 199 ~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 199 KTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp TTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 2478999988843211 2378888887655
No 461
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.89 E-value=0.011 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+..+++.|++|+|||||++.|.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999864
No 462
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.0082 Score=62.36 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=26.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI 998 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 998 (1156)
.++|.|++||||||+++.|.+.+ |...+|+-++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 36788999999999999998876 5667766444
No 463
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.85 E-value=0.012 Score=60.27 Aligned_cols=77 Identities=22% Similarity=0.400 Sum_probs=50.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.|++|.||||||||||++.|+.-++ |..|+ +||+|---++.++..+.+ -++-++-.+.+-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~ 76 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc
Confidence 4688999999999999999875432 34565 488887777777776654 55656655555555
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~ 1045 (1156)
. ++ .+-+++.++++.
T Consensus 77 ~-YG--t~~~~v~~~l~~ 91 (186)
T 1ex7_A 77 Y-YG--STVASVKQVSKS 91 (186)
T ss_dssp E-EE--EEHHHHHHHHHH
T ss_pred e-ee--eecceeeehhhC
Confidence 3 11 124556665544
No 464
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.83 E-value=0.0041 Score=73.59 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=28.2
Q ss_pred ccccccCCCEEEEecC-CcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1063 GRVLLKKSKVLVLDEA-TASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
++..+++++++|+... +.++... +..+.+.+++ .++.+|+|.++.+..
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 3445566666655444 4445444 4566667765 478899999887654
No 465
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.76 E-value=0.02 Score=63.32 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|+|||+|++++++-.
T Consensus 39 lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999999876
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.76 E-value=0.0035 Score=71.12 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 373 NPTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3578889999999998 999999999999999999998766544
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.75 E-value=0.031 Score=64.08 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=21.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVES 986 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p 986 (1156)
..+.|.|++|+||||+++.+.+....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999987643
No 468
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.74 E-value=0.015 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997664
No 469
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.74 E-value=0.11 Score=58.02 Aligned_cols=45 Identities=11% Similarity=0.300 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhc------------------CCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHF------------------SDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~------------------~~~TvI~IaHrl~ti 1113 (1156)
.++.+|+|||.- .++......+.+.+.+.. .+..+|..|++...+
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 468899999996 667777777777777642 134577778876544
No 470
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.72 E-value=0.015 Score=64.11 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.9
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+|.++.|+||+||||||+.+.|...++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567999999999999999999987653 24455543
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.71 E-value=0.042 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.+.||.|+||||++.+|++.+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677999999999999999985
No 472
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.69 E-value=0.011 Score=64.00 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=24.6
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++++++.+++| +.|+||+|+|||||+++|.+++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44455555555 88999999999999999998764
No 473
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.65 E-value=0.075 Score=51.72 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=26.0
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecC
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHR 1109 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHr 1109 (1156)
..+|+|||.- .++.+....+.+.+.+.. .+..+|..|.+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4789999976 567777777878777652 23445555543
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.1 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.||+|+|||+|++++.+..
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 35788999999999999999865
No 475
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.63 E-value=0.045 Score=62.37 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.2
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.|++|+|||||++++.+..
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 35788999999999999998765
No 476
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.56 E-value=0.013 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.|+||||||||||++.|+...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
No 477
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.54 E-value=0.017 Score=58.82 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|++|+|||||++.|.+-
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999984
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.53 E-value=0.016 Score=61.90 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999998743
No 479
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.52 E-value=0.017 Score=57.91 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 480
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.52 E-value=0.023 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|++|+|||||++.|.+..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999999999999864
No 481
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.49 E-value=0.079 Score=57.07 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADE 1037 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~de 1037 (1156)
.+..++.|.|++|+||||+++++.+.. ...++.-+..+-.......+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA-------------------------------QVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-------------------------------TCCEEEEETTTTSSSSTTHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-------------------------------CCCEEEechHHHHhhccChhHH
Q ss_pred HHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC-----------CHHHHHHHHHHHHHhcC-----Cc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV-----------DTATDNQIQQTLRQHFS-----DC 1101 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L-----------D~~te~~I~~~l~~~~~-----~~ 1101 (1156)
.+...++. |.-..|.||++||.-.-. +.+....+.+.+...-. +.
T Consensus 86 ~~~~~~~~-------------------a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 86 RVRSLFKE-------------------ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp HHHHHHHH-------------------HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred HHHHHHHH-------------------HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Q ss_pred eEEEeecCccccc-------ccCEEEEEe
Q 037346 1102 TVVTIAHRITSVL-------DSAMVLLLN 1123 (1156)
Q Consensus 1102 TvI~IaHrl~ti~-------~~D~I~Vl~ 1123 (1156)
.+|..+.+...+. .+|+.+.+.
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeC
No 482
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.45 E-value=0.16 Score=57.02 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++.|.|++|+||||+++.+.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 467889999999999999987653
No 483
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.45 E-value=0.012 Score=68.01 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
.+..++|+|++||||||+++.|++.+.+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56788999999999999999999887766665544
No 484
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.40 E-value=0.02 Score=58.71 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997643
No 485
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.36 E-value=0.012 Score=62.58 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+-+++|+||+||||||+.+.|...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998554
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.32 E-value=0.074 Score=60.63 Aligned_cols=123 Identities=15% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH-------HhhcCeeeccccccccccchhccCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-------LRTRLSIIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-------LR~~i~~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
++..+.|.||+|+||||+++.+.+.......-+.+.+..+....... +|+.++.-..+ +..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 136 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKA------------GAV 136 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhh------------hcc
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccC-----------------------------CCEEEEecCCcCC
Q 037346 1032 EEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKK-----------------------------SKVLVLDEATASV 1082 (1156)
Q Consensus 1032 ~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~-----------------------------~~ILiLDEaTS~L 1082 (1156)
....-.++ +.+...|.++. +++.. |.||++||+- .+
T Consensus 137 ~~~~~~~l----------d~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~-~l 201 (368)
T 3uk6_A 137 HTVSLHEI----------DVINSRTQGFL----ALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH-ML 201 (368)
T ss_dssp -CEEHHHH----------HHHTC----CC----SCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG-GS
T ss_pred ccccHhhh----------hhhhcccccch----hhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc-cc
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecC
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHR 1109 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHr 1109 (1156)
+.+....+.+.+.+.... .+++.+.+
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~ 227 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNR 227 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeeccc
No 487
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.31 E-value=0.021 Score=58.31 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997644
No 488
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.30 E-value=0.013 Score=60.07 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=27.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceE-EEcC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHI-LIDG 995 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I-~idG 995 (1156)
++|.|.+||||||+++.|.+.+.+.+|.+ .+|+
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 56889999999999999999998777776 4554
No 489
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.28 E-value=0.021 Score=58.58 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++++.-+ ...+++.|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~-~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNK-HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCC-ccEEEEECCCCCCHHHHHHHHhc
Confidence 355555433 23578889999999999999987
No 490
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.24 E-value=0.13 Score=58.64 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~ 430 (1156)
-+++|+++.|.|+.|||||||...++...... ++.+.|+.-+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCC
Confidence 47899999999999999999998776543221 23566666543
No 491
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.16 E-value=0.049 Score=55.70 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE--cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI--DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i--dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
++.-.++.|+.||||||++.-++.-+.-...++.+ ...|. ..+...+.++.+.-......
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~~~i~s~~g~~~~~~~~----------------- 63 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHSTMIVSHSGNGVEAHVI----------------- 63 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEE-----------------
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCcccEEecCCCceeeEEE-----------------
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcc-----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT----- 1111 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~----- 1111 (1156)
..+.+.....+ .+++++++||+-- +|++-...+.....+ +..|++..++.+
T Consensus 64 ---------~~~~~~~~~~~-----------~~~dvviIDE~Q~-~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~ 119 (184)
T 2orw_A 64 ---------ERPEEMRKYIE-----------EDTRGVFIDEVQF-FNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNP 119 (184)
T ss_dssp ---------SSGGGGGGGCC-----------TTEEEEEECCGGG-SCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCB
T ss_pred ---------CCHHHHHHHhc-----------CCCCEEEEECccc-CCHHHHHHHHHHHHC---CCCEEEEeeccccccCC
Q ss_pred ------cccccCEEEEEe
Q 037346 1112 ------SVLDSAMVLLLN 1123 (1156)
Q Consensus 1112 ------ti~~~D~I~Vl~ 1123 (1156)
.+..||.|..|+
T Consensus 120 f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 120 FETTALLLSLADTVIKKK 137 (184)
T ss_dssp CHHHHHHHHHCSEEEECC
T ss_pred ccchHHHHHHhhheEEee
No 492
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.14 E-value=0.022 Score=58.85 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
..+++|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.13 E-value=0.1 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.||+|+|||||++++.+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999999876
No 494
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.12 E-value=0.023 Score=56.92 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCI 406 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i 406 (1156)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 495
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.10 E-value=0.032 Score=63.28 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
|-.++|||.+|+|||||++.|.|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999984
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.07 E-value=0.091 Score=59.79 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355679999999999999999999865
No 497
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.05 E-value=0.025 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|.+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 498
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.01 E-value=0.0069 Score=63.40 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
+++|+|++||||||+++.|...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 499
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.00 E-value=0.027 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+..++|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
No 500
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.96 E-value=0.017 Score=65.49 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=33.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
+++.|++|+|||||++.|.+.+.+.+|++.+-+.|...
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 57889999999999999999999889998887777654
Done!