Query 037347
Match_columns 295
No_of_seqs 229 out of 1125
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 19:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.9E-24 6.4E-29 161.2 6.0 61 137-197 2-62 (63)
2 1u3e_M HNH homing endonuclease 93.7 0.00035 1.2E-08 59.6 -9.6 63 112-179 84-146 (174)
3 3igm_B PF14_0633 protein; AP2 86.4 0.43 1.5E-05 36.9 2.8 24 133-156 3-27 (77)
4 1z1b_A Integrase; protein-DNA 66.5 7.4 0.00025 34.2 5.1 41 140-185 15-55 (356)
5 3jtz_A Integrase; four strande 41.5 45 0.0016 25.3 5.2 44 141-185 28-75 (88)
6 1b69_A Protein (integrase); in 26.1 73 0.0025 23.8 3.9 27 135-163 9-35 (69)
7 3ju0_A Phage integrase; four s 25.0 96 0.0033 24.4 4.7 44 141-185 28-75 (108)
8 1x60_A Sporulation-specific N- 20.8 53 0.0018 23.4 2.2 23 161-183 46-68 (79)
9 3b23_C Variegin; hydrolase-hyd 19.2 26 0.0009 22.7 0.2 13 278-290 18-30 (32)
10 5gds_I Hirunorm V; serine prot 19.0 24 0.00082 21.8 -0.0 12 278-289 15-26 (26)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=1.9e-24 Score=161.18 Aligned_cols=61 Identities=75% Similarity=1.366 Sum_probs=58.0
Q ss_pred ceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCch
Q 037347 137 HYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRIRGPKAHLNFPLE 197 (295)
Q Consensus 137 ~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl~G~~A~lNFP~~ 197 (295)
+||||+++++|||+|+|+++..+|+++|||+|+|+||||+|||.|+++++|.+|.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 7999999999999999999866789999999999999999999999999999999999964
No 2
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=93.70 E-value=0.00035 Score=59.59 Aligned_cols=63 Identities=10% Similarity=-0.088 Sum_probs=46.4
Q ss_pred CCCCCCCCCccccccccCCCCCCCCceeeeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 037347 112 TASSAEPGPNKMNAMRVEKVATPTRHYRGVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYD 179 (295)
Q Consensus 112 ~~snl~pat~k~N~~n~~~~~~~tS~YRGV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD 179 (295)
..+||+-+|+++|.+++....... .++||.+...++|.+.|... +..+||.|+|.+|||++|.
T Consensus 84 ~~~NL~~~t~~eN~~~~~~~~~~~-~~~g~~~~~~~k~~~vi~~~----~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 84 LSTNLRWVTQKINVENQMSRGTLN-VSKAQQIAKIKNQKPIIVIS----PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp CGGGEEEECHHHHHHHHHHHTCCC-CHHHHHHHHHHTCCCEEEEC----TTSCEEEESCHHHHHHHHT
T ss_pred CHHHcEECCHHHHhhcccccCccc-ceeeeeeccCCCCceEEEEc----CCceEEeeCCHHHHHHHHC
Confidence 467899999999988766554332 25677653336788888843 3467899999999999963
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=86.41 E-value=0.43 Score=36.87 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=19.9
Q ss_pred CCCCceeeeEECCC-CeEEEEEecC
Q 037347 133 TPTRHYRGVRRRPW-GKYAAEIRDS 156 (295)
Q Consensus 133 ~~tS~YRGV~~r~~-GKW~A~Ir~~ 156 (295)
...|+|.||++.+. +.|.|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 45699999998865 9999999865
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=66.46 E-value=7.4 Score=34.18 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=30.8
Q ss_pred eeEECCCCeEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 037347 140 GVRRRPWGKYAAEIRDSSRKGARVWLGTFDTAEEAALAYDKAALRI 185 (295)
Q Consensus 140 GV~~r~~GKW~A~Ir~~~~kGkri~LGtFdT~EEAArAYD~AAikl 185 (295)
||++++.|+|..+.. .+|+++.+|. |..||..+..++...+
T Consensus 15 ~v~~~~~g~~~~r~~---~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP---RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT---TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee---cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 577778899998875 4688899996 8888877766654444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.52 E-value=45 Score=25.27 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=29.7
Q ss_pred eEECCCC--eEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHHh
Q 037347 141 VRRRPWG--KYAAEIRDSSRKGARVWLGTFD--TAEEAALAYDKAALRI 185 (295)
Q Consensus 141 V~~r~~G--KW~A~Ir~~~~kGkri~LGtFd--T~EEAArAYD~AAikl 185 (295)
|+..+.| .|.-+.+.. .+.+++-||.|+ |..+|....+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~-Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRIS-GKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEET-TEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeC-CeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4455654 488888754 344678999997 5788877766665544
No 6
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=26.07 E-value=73 Score=23.82 Aligned_cols=27 Identities=26% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCceeeeEECCCCeEEEEEecCCCCCeEE
Q 037347 135 TRHYRGVRRRPWGKYAAEIRDSSRKGARV 163 (295)
Q Consensus 135 tS~YRGV~~r~~GKW~A~Ir~~~~kGkri 163 (295)
.--+.|+++++.|+|++++.+.. |++.
T Consensus 9 r~L~~GesqR~dG~Y~yry~d~~--Gkr~ 35 (69)
T 1b69_A 9 RILKTGESQRKDGRYLYKYIDSF--GEPQ 35 (69)
T ss_dssp SCCCTTEEECSSSCEEEEEECTT--SSEE
T ss_pred CccCCCeEEccCCcEEEEEEcCC--CCEE
Confidence 35678899999999999999864 5553
No 7
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=25.02 E-value=96 Score=24.38 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=28.5
Q ss_pred eEECCCC--eEEEEEecCCCCCeEEecCCCC--CHHHHHHHHHHHHHHh
Q 037347 141 VRRRPWG--KYAAEIRDSSRKGARVWLGTFD--TAEEAALAYDKAALRI 185 (295)
Q Consensus 141 V~~r~~G--KW~A~Ir~~~~kGkri~LGtFd--T~EEAArAYD~AAikl 185 (295)
|+..+.| .|.-+.+.. .+.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~-GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFE-KKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEET-TEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEc-CceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4455654 488888754 334568899997 4777776666554444
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.81 E-value=53 Score=23.40 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 037347 161 ARVWLGTFDTAEEAALAYDKAAL 183 (295)
Q Consensus 161 kri~LGtFdT~EEAArAYD~AAi 183 (295)
.||++|.|.+.++|..+-++...
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 57999999999999888766544
No 9
>3b23_C Variegin; hydrolase-hydrolase inhibitor complex; 2.40A {Amblyomma variegatum}
Probab=19.16 E-value=26 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=10.9
Q ss_pred EEecCCChhHHHh
Q 037347 278 LEFQDLGSEYLDS 290 (295)
Q Consensus 278 ~~fedlg~dYl~~ 290 (295)
..||++|.||||.
T Consensus 18 gDFE~IP~~~~~~ 30 (32)
T 3b23_C 18 FDFEAIPEEYLDD 30 (32)
T ss_pred CChhhCCHhhhcc
Confidence 4689999999984
No 10
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=19.00 E-value=24 Score=21.80 Aligned_cols=12 Identities=8% Similarity=0.562 Sum_probs=9.4
Q ss_pred EEecCCChhHHH
Q 037347 278 LEFQDLGSEYLD 289 (295)
Q Consensus 278 ~~fedlg~dYl~ 289 (295)
=.|+++|.+|||
T Consensus 15 gDfe~IPeeYle 26 (26)
T 5gds_I 15 GDYEEIPAAYXE 26 (26)
T ss_pred CCcccCcHhhcC
Confidence 357889999985
Done!