BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037348
(579 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/481 (82%), Positives = 434/481 (90%), Gaps = 1/481 (0%)
Query: 99 DDHKVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG 158
+D KVLVGP+SE+E +GER VADYDWTEEWYPLYLTK+VP DAPLGL V+D+ IVL++DG
Sbjct: 74 EDQKVLVGPSSEQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDKNIVLFRDG 133
Query: 159 KGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSAC 218
+ +C++DRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIP+SAC
Sbjct: 134 NDQFQCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPKSAC 193
Query: 219 VRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLM 278
V+TYEV++SQGV+WVWMS+KTPPN K+PWFENFARPGFQD+ST HELPYDHSILLENLM
Sbjct: 194 VKTYEVRDSQGVLWVWMSRKTPPNVSKIPWFENFARPGFQDISTTHELPYDHSILLENLM 253
Query: 279 DPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVL 338
DPAH+PISHDRTD+SAKREDAQ LGFEVTERTDRGFAG WGREKDGS PNFLRFEAPCVL
Sbjct: 254 DPAHVPISHDRTDWSAKREDAQALGFEVTERTDRGFAGWWGREKDGSKPNFLRFEAPCVL 313
Query: 339 QNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASK 398
QNNRE VD K GE ++ +GLFLCRPTGQGKSMLIVRFG T SP IKLFP+WYFHQ+ASK
Sbjct: 314 QNNREIVD-KNGEINHFSGLFLCRPTGQGKSMLIVRFGATKRSPLIKLFPEWYFHQNASK 372
Query: 399 VFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHGMPYYFGHSTI 458
VFEQDMGFLSSQNE+LLKEKVPTKELY NL+S DTWVAEYRKWMDK GHGMPY+FGHSTI
Sbjct: 373 VFEQDMGFLSSQNEILLKEKVPTKELYLNLKSSDTWVAEYRKWMDKVGHGMPYHFGHSTI 432
Query: 459 SLPKVPAVVEHAPAGLVAGVSASLPAKGGIGTMHAPNLANRYFRHVIHCKGCRSAVKAFN 518
SLP+ PAVVEHAPAGLVAG+SAS PAKGGIGTMHAPNLANRYFRHVIHCKGC SA+KAF
Sbjct: 433 SLPEEPAVVEHAPAGLVAGLSASSPAKGGIGTMHAPNLANRYFRHVIHCKGCSSAIKAFQ 492
Query: 519 TWKNSLSTAAALLTALAILGAGRQWRAFCLVSASLCLAGVYACSTAISMNTTNFIRTHRR 578
WKN LS L ALAIL +GRQW+ L SASLC GVYACSTAI+MNTTNFIR HRR
Sbjct: 493 IWKNVLSGVVVALAALAILVSGRQWKVLLLASASLCSVGVYACSTAIAMNTTNFIRVHRR 552
Query: 579 L 579
L
Sbjct: 553 L 553
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/545 (70%), Positives = 438/545 (80%), Gaps = 15/545 (2%)
Query: 36 SLFFSPLLKIPSPKLKPSPFFTPPTTGNVISPIKAHKLRKRTEPKLTKCHAVTDMSSSAV 95
SL +P I K+ P+P + I +L +R+ T AV+D +
Sbjct: 9 SLQLTPTSPILFTKVTPTPIIHNHRSTCTIPTKPRLRLLRRSAVAGT---AVSDQTEGG- 64
Query: 96 PTPDDHKVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLY 155
VL+ P EEE R E VADYDWTEEWYPLYLTK+VP+DAPLGLTV+D+QIVLY
Sbjct: 65 -----GDVLLNP--EEEKRVE--VADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVLY 115
Query: 156 KDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPR 215
KDG+G LRC++DRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPA AKIP+
Sbjct: 116 KDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPASAKIPK 175
Query: 216 SACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLE 275
+ACV+TYEVK+SQGVVWVWMS KTPPNP+KLPWFENFARPGF D+ST HELPYDHSILLE
Sbjct: 176 AACVKTYEVKDSQGVVWVWMSTKTPPNPEKLPWFENFARPGFFDISTTHELPYDHSILLE 235
Query: 276 NLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSM-PNFLRFEA 334
NLMDPAH+PISHDRTD++AKREDAQPL FEVTER++RGFAG WGREK+G N LRF+A
Sbjct: 236 NLMDPAHVPISHDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGREKEGGKGSNLLRFDA 295
Query: 335 PCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQ 394
PCVLQNNRE + K G K+Y +GLFLCRPTGQGKSMLIVRFG T SP + + P W++HQ
Sbjct: 296 PCVLQNNRE-FEGKDGVKNYFSGLFLCRPTGQGKSMLIVRFGVTKRSPLVSVLPQWFWHQ 354
Query: 395 SASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHGMPYYFG 454
+A KVFEQDMGFLSSQNEVL+KEKVPTK+LY NL+S DTWVAEYRKWMDK GHGMPY+FG
Sbjct: 355 NACKVFEQDMGFLSSQNEVLMKEKVPTKDLYLNLKSSDTWVAEYRKWMDKVGHGMPYHFG 414
Query: 455 HSTISLPKVPAVVEHAPAGLVAGVSASLPAKGGIGTMHAPNLANRYFRHVIHCKGCRSAV 514
H TISLPKVP VVEHAPAGL+A +SAS PAKGGIGTMHAPNLANRYFRH+IHC+ C + +
Sbjct: 415 HRTISLPKVPPVVEHAPAGLIAALSASYPAKGGIGTMHAPNLANRYFRHIIHCRSCSNVI 474
Query: 515 KAFNTWKNSLSTAAALLTALAILGAGRQWRAFCLVSASLCLAGVYACSTAISMNTTNFIR 574
K+F WKN LS A LTALAIL RQW+A L SA+LC A Y C AI++NT NFIR
Sbjct: 475 KSFELWKNILSATAVALTALAILVVSRQWKAVLLGSAALCSAAAYTCLRAINLNTNNFIR 534
Query: 575 THRRL 579
THRRL
Sbjct: 535 THRRL 539
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 145/501 (28%), Positives = 225/501 (44%), Gaps = 78/501 (15%)
Query: 110 EEESRG--ERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGE-LRCHQ 166
EEE G E +++ W + WYP+ L +D+ + P + + +VL+ D +
Sbjct: 68 EEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFD 127
Query: 167 DRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPADA------KIPRSACV 219
D CPHRLA LSEG+L + G L+C YHGW F G G C +IPQ K PR AC
Sbjct: 128 DLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPR-ACA 186
Query: 220 RTYEVKESQGVVWVWMSQK-----TPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILL 274
+ SQG+++VW + P +LP ++F +P F V+ +L Y + L+
Sbjct: 187 IKFPTMVSQGLLFVWPDENGWDRANSIEPPRLP--DDFDKPEFSTVTIQRDLFYGYDTLM 244
Query: 275 ENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEA 334
EN+ DP+HI +H + + +R+ A+PL F+V GF G D S +F A
Sbjct: 245 ENVSDPSHIDFAHHKV--TGRRDRAKPLPFKVESSGPWGFQG----ANDDSPRITAKFVA 298
Query: 335 PCVLQNNRESVDNK---TGEKHYSTGLFLCR---PTGQGKSMLIV-------RFGTTGTS 381
PC N E +D K G + + +++C P GK+ IV +F G +
Sbjct: 299 PCYSMNKIE-LDAKLPIVGNQKWV--IWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPA 355
Query: 382 PWIKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKE---------LYFNLRSID 432
W ++ P WY H +++ V++ DM L Q +V L + + + + L F D
Sbjct: 356 -WWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQAD 414
Query: 433 TWVAEYRKWMDKAGHGMPYYFGHSTISLPKVPAVVEHAPAGLVAGVSASLPAKGGIGTMH 492
+V +R W+ + G P +FG ST S +P+ V +
Sbjct: 415 RFVLAFRNWLRRHGKSQPEWFG-STPSNQPLPSTV-----------------------LT 450
Query: 493 APNLANRYFRHVIHCKGCRSAVKAFNTWKNSLSTAAALLTALAILGAGRQWRAFCLVSAS 552
+ +R+ +H C C+ A +F K L A A A + + Q R LV A
Sbjct: 451 KRQMLDRFDQHTQVCSSCKGAYNSFQILKKFLVGATVFWAATAGVPSDVQIR---LVLAG 507
Query: 553 LCLAGVYACSTAISMNTTNFI 573
L L A + A+ NF+
Sbjct: 508 LSLISA-ASAYALHEQEKNFV 527
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/509 (25%), Positives = 203/509 (39%), Gaps = 99/509 (19%)
Query: 110 EEESRGERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-GKGELRCHQDR 168
E E+ E +DW WYP+ D+ P G V +V++ D + + + D
Sbjct: 67 EPEALFEPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDT 126
Query: 169 CPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPAD---AKIPRSACVRTYEV 224
CPHRLA LS+G++ GRL+C+YHGW F G G C IPQ P D + ACV Y
Sbjct: 127 CPHRLAPLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFKQACVAVYPS 186
Query: 225 KESQGVVWVWMSQ----KTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDP 280
++W W + K +K P+ P F + ++PY + +L+ENLMDP
Sbjct: 187 TVQHEIIWFWPNSDPKYKNIIETNKPPYIPELEDPSFTKLMGNRDIPYGYDVLVENLMDP 246
Query: 281 AHIPISH--------DRTDY---------------------SAKREDAQPLGFEVTERTD 311
AH+P +H + Y RE +PL V + +
Sbjct: 247 AHVPYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDN 306
Query: 312 RGFAG--QWGREKDGSMPNFLRFEAPCVLQNNRESV-------------DNKTGEKHYST 356
+GF +WG + F APCV +++ + + D K +
Sbjct: 307 KGFFSKQEWG---------YSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLS 357
Query: 357 GLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLK 416
+F+C P G+S LI F K+ P W FH + + + D+ L + +L
Sbjct: 358 LIFICIPVSPGRSRLIWTFPRNFGVFIDKIVPRWVFHIGQNTILDSDLHLLHVEERKIL- 416
Query: 417 EKVP---TKELYFNLRSIDTWVAEYRKWMDKAGHGMPYYFGH-STISLPKVPAVVEHAPA 472
E+ P K + +S D V +R+W +K + G LP P +
Sbjct: 417 ERGPENWQKACFIPTKS-DANVVTFRRWFNKYSEARVDWRGKFDPFLLPPTPPREQ---- 471
Query: 473 GLVAGVSASLPAKGGIGTMHAPNLANRYFRHVIHCKGCRSAVKAFNTWKNSLSTAA-ALL 531
L +RY+ HV +C C+ A K N + L A+ A++
Sbjct: 472 -----------------------LFDRYWSHVENCSSCKKAHKYLNALEVILQIASVAMI 508
Query: 532 TALAILG---AGRQWRAFCLVSASLCLAG 557
+A+L R LV+A L A
Sbjct: 509 GVMAVLKQTTMSNVARIAVLVAAVLSFAA 537
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 154/329 (46%), Gaps = 37/329 (11%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WYP + +P D + +F + V+++D KG+ C +D C HR LS G++++G++
Sbjct: 305 WYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVM 364
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 247
C YHGW+F G+G C K+P P R+ V E G +WVW P + LP
Sbjct: 365 CPYHGWEFNGDGACTKMPSTP----FCRNVGVAALPCAEKDGFIWVWPGDGLP--AETLP 418
Query: 248 WFENFARP--GFQDVSTIH-ELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGF 304
+FA+P GF + I ++P +H +L+ENL+D AH P +H T P+
Sbjct: 419 ---DFAQPPEGFLIHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFAR-----GWPVPD 470
Query: 305 EVTERTDRGFAGQWGREKDGSMPNFLRFEAPCV------LQNNRESVDNKTGE--KHYST 356
V ++ +G W P + F+ PC+ L + + T K++
Sbjct: 471 FVKFHANKALSGFW-----DPYPIDMAFQPPCMTLSTIGLAQPGKIMRGVTASQCKNHLH 525
Query: 357 GLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFP--DWYFHQSASKVFEQDMGFLSSQNEVL 414
L +C P+ +G + L+ R + PW++ P D + Q A++V +D+ + Q + +
Sbjct: 526 QLHVCMPSKKGHTRLLYRM-SLDFLPWMRHVPFIDRIWKQVAAQVLGEDLVLVLGQQDRM 584
Query: 415 LKEKVPTKELYFNLRSIDTWVAEYRKWMD 443
L+ + N D YR+W +
Sbjct: 585 LR----GGSNWSNPAPYDKLAVRYRRWRN 609
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 147/335 (43%), Gaps = 39/335 (11%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WYP+ + D+ DD + + F++Q V+++ G C + C HR L G + +GR++
Sbjct: 220 WYPVAFSSDLKDDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQ 279
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN--PDK 245
C YHGW++ +GKC K+P + +R+ E +G+VW+W P + P
Sbjct: 280 CPYHGWEYSTDGKCEKMPSTKM-----LNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSL 334
Query: 246 LPWFENFARPGFQ-DVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGF 304
LP GF + ELP +H +LL+NL+D AH P +H T AK L
Sbjct: 335 LP------PSGFTIHAEIVMELPVEHGLLLDNLLDLAHAPFTH--TSTFAKGWSVPSLVK 386
Query: 305 EVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQNN--------RESVDNKTGEKHYST 356
+T + G G W P + F PC++ + E K H
Sbjct: 387 FLTPSS--GLQGYW-----DPYPIDMEFRPPCMVLSTIGISKPGKLEGKSTKQCSTHLHQ 439
Query: 357 GLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQS--ASKVFEQDMGFLSSQNEVL 414
L +C P+ + K+ L+ R + +PWIK P + S A KV +D+ + Q E +
Sbjct: 440 -LHICLPSSRNKTRLLYRM-SLDFAPWIKHVPFMHILWSHFAEKVLNEDLRLVLGQQERM 497
Query: 415 LKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHGM 449
+ ++ S D YR W D G+
Sbjct: 498 IN----GANVWNWPVSYDKLGIRYRLWRDAIERGV 528
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/369 (25%), Positives = 147/369 (39%), Gaps = 37/369 (10%)
Query: 93 SAVPTPDDHKVLVGPASEEESRGERRVADYDWTEE-WYPLYLTKDVPDDAPLGLTVFDQQ 151
S VP P V GP ++ R + D WYP K + + +F
Sbjct: 99 SHVPQPS-QAVRRGPKPKDSRRLRSSLELEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVP 157
Query: 152 IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADA 211
VL++D C +D C HR LS G++I+G ++C YHGW+F+G G C K+P
Sbjct: 158 WVLFRDEHSAPTCIKDSCAHRACPLSLGKVINGHVQCPYHGWEFDGSGACTKMPS----T 213
Query: 212 KIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDV--STIHELPYD 269
++ V E G VWVW PP+ + A P DV + ++P +
Sbjct: 214 RMCHGVGVAALPCVEKDGFVWVWPGDGPPPDLPP----DFTAPPAGYDVHAEIMVDVPVE 269
Query: 270 HSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNF 329
H +L+ENL+D AH P +H T P+ V + AG W P
Sbjct: 270 HGLLMENLLDLAHAPFTHTTT-----FARGWPIPEAVRFHATKMLAGDW-----DPYPIS 319
Query: 330 LRFEAPCVL-------QNNRESVDNKTGE-KHYSTGLFLCRPTGQGKSMLIVRFGTTGTS 381
+ F PC+ Q + K E K + L +C P+ +G + L+ R
Sbjct: 320 MSFNPPCIALSTIGLSQPGKIMRGYKAEECKRHLHQLHVCMPSKEGHTRLLYRMSLDFWG 379
Query: 382 PWIKLFP--DWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYR 439
W K P D + + A +V +D+ + Q ++ + + D YR
Sbjct: 380 -WAKHVPFVDVLWKKIAGQVLGEDLVLVLGQQARMIG----GDDTWCTPMPYDKLAVRYR 434
Query: 440 KWMDKAGHG 448
+W + G
Sbjct: 435 RWRNMVADG 443
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 6/164 (3%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WY + D PL T ++++VL++ G +DRC HRLA LS G + D +
Sbjct: 7 WYVAGMATDC-SRKPLARTFLNEKVVLFRTHDGHAVALEDRCCHRLAPLSLGDVEDAGIR 65
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL- 246
C YHG F G CV+I P +IP CVR + + E G++W+WM NPD +
Sbjct: 66 CRYHGMVFNASGACVEI---PGQEQIPPGMCVRRFPLVERHGLLWIWMGDPARANPDDIV 122
Query: 247 PWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRT 290
N A D IH ++ ++++NL+D H+ H T
Sbjct: 123 DELWNGAPEWRTDSGYIH-YQANYQLIVDNLLDFTHLAWVHPTT 165
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 42/340 (12%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WYP+ T D+ D + + F+Q V+++ G+ C ++ C HR L G + +GR++
Sbjct: 221 WYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQ 280
Query: 188 CLYHGWQFEGEGKCVKIPQLP-ADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL 246
C YHGW++ +G+C K+P KI C+ E +G++W+W + P
Sbjct: 281 CPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCL------EQEGMIWIWPGDEPPA----- 329
Query: 247 PWFENFARP-GFQ-DVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGF 304
P + P GF + +LP +H +LL+NL+D AH P +H T AK L
Sbjct: 330 PILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTH--TSTFAKGWSVPSLVK 387
Query: 305 EVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQN--------NRESVDNKTGEKHYST 356
+T + G G W P + F+ PC++ + E + H
Sbjct: 388 FLTPTS--GLQGYW-----DPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQ 440
Query: 357 GLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFP--DWYFHQSASKVFEQDMGFLSSQNEVL 414
L +C P+ + K+ L+ R + +P +K P + + A +V +D+ + Q E +
Sbjct: 441 -LHVCLPSSKNKTRLLYRM-SLDFAPILKNLPFMEHLWRHFAEQVLNEDLRLVLGQQERM 498
Query: 415 LKEKVPTKELYFNLRSIDTWVAEYRKW---MDKAGHGMPY 451
L ++ + D YR W +D+ +P+
Sbjct: 499 LN----GANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPF 534
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WY + T D D PLG + +++IV Y+ +G + +D CPHR A LS G + DG+L
Sbjct: 7 WY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDGKLI 65
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 247
C YHG + EGK + +P ++ C+++Y V+E G +WVW + +P +
Sbjct: 66 CGYHGLEMGCEGKTLAMP----GQRVQGFPCIKSYAVEERYGFIWVWPGDRELADPALIH 121
Query: 248 WFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVT 307
E P + ++ + D+ ++++NLMD H H + K D P+ V
Sbjct: 122 HLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVH-ASSIGQKEIDEAPVSTRVE 180
Query: 308 ERT 310
T
Sbjct: 181 GDT 183
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
WY ++P + T+ ++ ++LY+D +G + ++RC HR A L G+ +
Sbjct: 7 WYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEGDCVR 66
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 247
CLYHG +F G CV+I P +IP C+++Y V E +VW+WM NPD +
Sbjct: 67 CLYHGLKFNPSGACVEI---PGQEQIPPKTCIKSYPVVERNRLVWIWMGDPARANPDDIV 123
Query: 248 WFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRT 290
+ P ++ ++ ++++NL+D H+ H T
Sbjct: 124 DYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTT 166
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 107/225 (47%), Gaps = 22/225 (9%)
Query: 126 EEWYP-LYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG 184
E W P L T+ +P+ L + +++V +++ G + RCPHR L G++ +G
Sbjct: 25 EYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRGVSLFMGRVEEG 84
Query: 185 RLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWM-SQKTPPNP 243
L C+YHGW+F EGKCV +P + + + S V Y VKE GVVWV+M ++K P
Sbjct: 85 GLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWVYMGTRKVLP-- 142
Query: 244 DKLPWFENFARPGFQ-DVSTIHELPYDHSILLENL---MDPAHIPISHDRTDYSAKREDA 299
+LP E P + DV + S L+NL +D +H H ++ + D
Sbjct: 143 -ELPRLEVLNLPENEVDVICLQR----KSNWLQNLEGEIDTSHFNFLHVGGLHADEVPDD 197
Query: 300 QPLGFE-------VTERTDRG--FAGQWGREKDGSMPNFLRFEAP 335
PL + + + T G +A Q E+D + F F P
Sbjct: 198 HPLKYTAQVAPQYLVKETALGTCYAAQVPAEEDHTYTRFAHFLFP 242
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Query: 147 VFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQ 206
+ ++++V+Y+ + +D CPHR A LS G + DG+L C YHG + +G+ +P
Sbjct: 2 ICNERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPA 61
Query: 207 LPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVSTIHEL 266
++ C+R + +E G +WVW +P +P E P + ++ +
Sbjct: 62 ----QRVQAFPCIRAFPAQERHGFIWVWPGDAALADPALIPHLEWAENPAWAYGGGLYHI 117
Query: 267 PYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQW 318
D+ ++++NLMD H H + K D P+ V DR G++
Sbjct: 118 ACDYRLMIDNLMDLTHETYVH-ASSIGQKEIDEAPVSTRV--EGDRLITGRF 166
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 128 WYPLYLTKDV--PDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR 185
W P+ L ++V PD P+ +F + +V+++D G + + CPHR L G+ +
Sbjct: 27 WTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGVMDEYCPHRRVSLIYGRNENSG 86
Query: 186 LECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDK 245
L CLYHGW+ + +G V++ PA + + + Y+ +E G VW +M + D
Sbjct: 87 LRCLYHGWKMDVDGNVVEMVSEPAASNMCQKVKHTAYKTREWGGFVWAYMGPQ-----DA 141
Query: 246 LPWF 249
+P F
Sbjct: 142 IPEF 145
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYK-DGKGELRCHQDRCPHRLAKLSEGQLIDGR- 185
WYP+ +K++ + P L + + +++ + DGK L C +DRC HR +LS +
Sbjct: 29 WYPVMFSKEIDEGEPKTLKLLGENLLVNRIDGK--LYCLKDRCLHRGVQLSVKVECKTKS 86
Query: 186 -LECLYHGWQFEGE-GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP-- 241
+ C YH W + E G I P A+I R ++TY V+E++G V++++ PP
Sbjct: 87 TITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQK-LKTYPVQEAKGCVFIYLGDGDPPPL 145
Query: 242 NPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQP 301
D P NF + + + + + +EN DP+HI I D + A P
Sbjct: 146 ARDTPP---NFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSI-LVKDNDLALP 201
Query: 302 LGF 304
LGF
Sbjct: 202 LGF 204
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
W+ L + KD + P G+ F ++V++ D G+L+ C H LSEG + +
Sbjct: 26 WHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVA 85
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK-TPPNP 243
C +H W++ G+G+C +P + PR A R++ G+++VW + PP+P
Sbjct: 86 CPFHDWRWGGDGRCKLVPYA---RRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 19/186 (10%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR-- 185
WYP+ L ++ + P+ + + ++I+L + G G++ QDRC HR LS+ +
Sbjct: 29 WYPVRLASEIAEGTPVPVKLLGEKILLNRVG-GKVYAIQDRCLHRGVTLSDRVECYSKNT 87
Query: 186 LECLYHGWQFE-GEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTP-PNP 243
+ C YHGW + +G+ V I P +I R A ++T+ V+E++G+++V++ P P
Sbjct: 88 ISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRA-LKTFPVEEAKGLIFVYVGDGEPTPLI 146
Query: 244 DKLPWFENFARPGFQD----VSTIHELPYDHSIL-LENLMDPAHIPISHDRTDYSAKRED 298
+ +P PGF D + H L + L EN D H+ I H + +
Sbjct: 147 EDVP-------PGFLDENRAIHGQHRLVASNWRLGAENGFDAGHVLI-HKNSILVKGNDI 198
Query: 299 AQPLGF 304
PLGF
Sbjct: 199 ILPLGF 204
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
W P+ L+ DV D P + + + +VL++D G RC HR L G + + +
Sbjct: 45 WQPVALSADV-TDRPQMVRILGEDLVLFRDKAGRPGLLYPRCMHRGTSLYYGHVEEAGIR 103
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS--QKTP--PNP 243
C YHGW F +G C+ P P +A Y V+E G+V+ +M +K P P
Sbjct: 104 CCYHGWLFAVDGTCLNQPCEPEGGLRREAARQPWYPVEERYGLVFAYMGPPEKKPVLPRY 163
Query: 244 DKLPWFE-----NFARPGFQDVSTIHE---LPYDHSILLENLMDPAHIPISH 287
D L E GF + E +PY EN+MDP H+ I H
Sbjct: 164 DILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNWENIMDPYHVYILH 215
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLE 187
W+ L K+ D P + +F ++V++ D KGEL C H LS+G + +
Sbjct: 24 WHCLGPVKNFSDGKPHSVNIFGTKLVVFADSKGELNVLDAYCRHMGGDLSKGTVKGDEVA 83
Query: 188 CLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK-TPPNPD 244
C +H W++ G+GKC +P + PR A R++ G+++VW + PP P+
Sbjct: 84 CPFHDWRWGGDGKCKLVPYA---KRTPRLARTRSWHTDVRGGLLFVWHDHEGNPPQPE 138
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 117 RRVADYD--WTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLA 174
RRV D + WY + ++ + ++ + +TV Q + L + G + CPH A
Sbjct: 68 RRVGDMPPVFPNGWYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYITDSYCPHIGA 127
Query: 175 KLSEGQLI--DGRLECLYHGWQFEGE-GKCVKIPQLPADAKIPRSACVRTYEVKESQGVV 231
+ G + D ++C +HGW F E GKCV++P + +IP A V T+ E +
Sbjct: 128 NFNIGGRVVRDNCIQCPFHGWIFSAETGKCVEVPY--DEGRIPEQAKVTTWPCIERNNNI 185
Query: 232 WVW 234
++W
Sbjct: 186 YLW 188
>sp|Q84BZ3|ANDAC_BURCE Anthranilate 1,2-dioxygenase large subunit OS=Burkholderia cepacia
GN=andAc PE=1 SV=1
Length = 423
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 128 WYPLYLTKDVPDDAPLGLT-VFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRL 186
W + L ++P+ T V D +V+ + G L +RC HR A++ +
Sbjct: 53 WNFVALEAEIPNAGDFKSTFVGDTPVVVTRTEDGALSAWVNRCAHRGAQVCRKSRGNASS 112
Query: 187 E-CLYHGWQFEGEGKCVKIP---------QLPADAKIPRSACVRTYEVKESQGVVWVWMS 236
C+YH W F+ EG + +P +PAD P+ +R V +G+V+ S
Sbjct: 113 HTCVYHQWSFDNEGNLLGVPFRRGQKGMTGMPADFD-PKQHGLRKLRVDSYRGLVFATFS 171
Query: 237 QKTPPNPDKL-----PWFEN-FARPGFQDVSTIHELPYDHSILLENLMDPAHIPISH 287
P PD L PW + F +P T + + +EN+ DP H + H
Sbjct: 172 DDVAPLPDYLGAQMRPWIDRIFHKPIEYLGCTRQYSKSNWKLYMENVKDPYHASMLH 228
>sp|P42436|NASE_BACSU Assimilatory nitrite reductase [NAD(P)H] small subunit OS=Bacillus
subtilis (strain 168) GN=nasE PE=2 SV=1
Length = 106
Score = 47.0 bits (110), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 143 LGLTVF--DQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGK 200
LG TV+ D+++ ++K G +R ++RCPH+ L+EG + + C H W+ E
Sbjct: 21 LGKTVYIEDKELAVFKLSDGSIRAIENRCPHKGGVLAEGIVSGQYVFCPMHDWKISLEDG 80
Query: 201 CVKIPQLPADAKIPRSACVRTYE 223
V+ P CV+TYE
Sbjct: 81 IVQEPD---------HGCVKTYE 94
>sp|Q3C1E3|TPDA1_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 1 OS=Comamonas sp. GN=tphA2I PE=1 SV=1
Length = 413
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 18/179 (10%)
Query: 126 EEWYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGKGELRCHQDRCPHR--LAKLSEGQLI 182
E W L L ++P T + IV+ +D E+ ++RC HR L L +
Sbjct: 38 EVWNYLCLESEIPGAGDFRTTFAGETPIVVVRDADQEIYAFENRCAHRGALIALEKSGRT 97
Query: 183 DGRLECLYHGWQFEGEGKCVKIP---QLPADAKIPRSACV-----RTYEVKESQGVVWVW 234
D +C+YH W + +G + + +P S C R V G+V+
Sbjct: 98 DS-FQCVYHAWSYNRQGDLTGVAFEKGVKGQGGMPASFCKEEHGPRKLRVAVFCGLVFGS 156
Query: 235 MSQKTPPNPDKL--PWFENFARPGFQDVSTI----HELPYDHSILLENLMDPAHIPISH 287
S+ P D L E R + V I +LP + + EN+ D H + H
Sbjct: 157 FSEDVPSIEDYLGPEICERIERVLHKPVEVIGRFTQKLPNNWKLYFENVKDSYHASLLH 215
>sp|Q3C1D5|TPDA2_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 2 OS=Comamonas sp. GN=tphA2II PE=1 SV=1
Length = 413
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 18/179 (10%)
Query: 126 EEWYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGKGELRCHQDRCPHR--LAKLSEGQLI 182
E W L L ++P T + IV+ +D E+ ++RC HR L L +
Sbjct: 38 EVWNYLCLESEIPGAGDFRTTFAGETPIVVVRDADQEIYAFENRCAHRGALIALEKSGRT 97
Query: 183 DGRLECLYHGWQFEGEGKCVKIP---QLPADAKIPRSACV-----RTYEVKESQGVVWVW 234
D +C+YH W + +G + + +P S C R V G+V+
Sbjct: 98 DS-FQCVYHAWSYNRQGDLTGVAFEKGVKGQGGMPASFCKEEHGPRKLRVAVFCGLVFGS 156
Query: 235 MSQKTPPNPDKL--PWFENFARPGFQDVSTI----HELPYDHSILLENLMDPAHIPISH 287
S+ P D L E R + V I +LP + + EN+ D H + H
Sbjct: 157 FSEDVPSIEDYLGPEICERIERVLHKPVEVIGRFTQKLPNNWKLYFENVKDSYHASLLH 215
>sp|Q51493|NDOA_PSEAI Naphthalene 1,2-dioxygenase system ferredoxin subunit
OS=Pseudomonas aeruginosa GN=ndoA PE=3 SV=3
Length = 104
Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 125 TEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG 184
TE+W ++P+ LG+TV +++ LY + +GE+ + C H A++S+G L
Sbjct: 2 TEKWIDAVALYEIPEGDVLGVTVEGKELALY-EVEGEIYATDNLCTHGAARMSDGFLEGR 60
Query: 185 RLECLYHGWQFE---GEGKCVKIPQLPADAKIPRSACVRTYEVK-ESQGVV 231
+EC H +F+ G C + Q ++TY VK E Q V+
Sbjct: 61 EIECPLHQGRFDVCTGRALCAPVTQ-----------NIKTYPVKIEGQRVM 100
>sp|Q84BZ1|ANDAB_BURCE Anthranilate 1,2-dioxygenase ferredoxin subunit OS=Burkholderia
cepacia GN=andAb PE=1 SV=1
Length = 108
Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRL 186
EW+PL + +D P + I +++ G EL D C H A+LSEG + DG +
Sbjct: 8 EWHPLGAIDEFTEDEPAARVAGQKPIAVFRIGD-ELFAMHDLCSHGHARLSEGYVEDGCV 66
Query: 187 ECLYHGWQFE---GEGKCVKIPQ 206
EC H + G KC I +
Sbjct: 67 ECPLHQGLIDIRTGAPKCAPITE 89
>sp|O52381|NAGAB_RALSP Naphthalene 1,2-dioxygenase/salicylate 5-hydroxylase systems,
ferredoxin component OS=Ralstonia sp. GN=nagAb PE=1 SV=1
Length = 104
Score = 42.4 bits (98), Expect = 0.011, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 125 TEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG 184
T+ W D+P+ +G+ V ++I LY + +GE+ + C H A++S+G L
Sbjct: 2 TQNWIDAACLDDIPEGDVVGVKVNGKEIALY-EVEGEIYATDNLCTHGAARMSDGFLEGR 60
Query: 185 RLECLYHGWQFE---GEGKCVKIPQLPADAKIPRSACVRTYEVK 225
+EC H +F+ G+ C P + ++TY VK
Sbjct: 61 EIECPLHQGRFDVCTGKALCT-----------PLTKDIKTYPVK 93
>sp|O22553|CHMO_BETVU Choline monooxygenase, chloroplastic OS=Beta vulgaris GN=CMO PE=2
SV=1
Length = 446
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 151 QIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 210
+ ++ +DG+GEL + C HR + L+ G C YHGW + +G K +
Sbjct: 151 EYLVSRDGQGELHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLAKASKATET 210
Query: 211 AKI-PRSACVRTYEVKESQGVVWVWMSQKTPPNPD-KLPWF----ENFARPGFQ-DVSTI 263
+ P+ + +V E + + + + N D W E+ F ++
Sbjct: 211 QNLDPKELGLAPLKVAEWGPFILISLDRSLDANADVGTEWIGKSAEDVKAHAFDPNLKFT 270
Query: 264 H--ELPYDHS--ILLENLMDPA-HIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQW 318
H E P + + + +N +D + H+P +H Y A D E+ E+ G
Sbjct: 271 HRSEFPMECNWKVFCDNYLDSSYHVPYAH---KYYAAELDFDTYNTEMIEKCVIQRVGSS 327
Query: 319 GREKDG 324
+ DG
Sbjct: 328 SNKPDG 333
>sp|P0A186|NDOA_PSEU8 Naphthalene 1,2-dioxygenase system ferredoxin subunit
OS=Pseudomonas sp. (strain C18) GN=doxA PE=3 SV=2
Length = 104
Score = 40.0 bits (92), Expect = 0.052, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 125 TEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG 184
T +W D+ + LG+TV +++ LY + +GE+ + C H A++S+G L
Sbjct: 2 TVKWIEAVALSDILEGDVLGVTVEGKELALY-EVEGEIYATDNLCTHGSARMSDGYLEGR 60
Query: 185 RLECLYHGWQFE---GEGKCVKIPQLPADAKIPRSACVRTYEVK 225
+EC H +F+ G+ C + Q ++TY VK
Sbjct: 61 EIECPLHQGRFDVCTGKALCAPVTQ-----------NIKTYPVK 93
>sp|P0A185|NDOA_PSEPU Naphthalene 1,2-dioxygenase system ferredoxin subunit
OS=Pseudomonas putida GN=ndoA PE=1 SV=2
Length = 104
Score = 40.0 bits (92), Expect = 0.052, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 125 TEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG 184
T +W D+ + LG+TV +++ LY + +GE+ + C H A++S+G L
Sbjct: 2 TVKWIEAVALSDILEGDVLGVTVEGKELALY-EVEGEIYATDNLCTHGSARMSDGYLEGR 60
Query: 185 RLECLYHGWQFE---GEGKCVKIPQLPADAKIPRSACVRTYEVK 225
+EC H +F+ G+ C + Q ++TY VK
Sbjct: 61 EIECPLHQGRFDVCTGKALCAPVTQ-----------NIKTYPVK 93
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 40.0 bits (92), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 122 YDWTEEWYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGKGELRCHQDRCPHRLAKLSEGQ 180
Y + W L +P++ T +Q I++ ++ GEL + C HR A+L +
Sbjct: 47 YIFEGNWVYLAHESQIPNNNDYYTTYIGRQPILIARNRNGELNAMINACSHRGAQLCRHK 106
Query: 181 LIDGR-LECLYHGWQFEGEGKCVKIPQLPADA 211
+ C +HGW F GK +K+ P+DA
Sbjct: 107 RGNKTTYTCPFHGWTFNNSGKLLKVKD-PSDA 137
>sp|Q9SZR0|CHMO_ARATH Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana
GN=At4g29890 PE=2 SV=2
Length = 422
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 149 DQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLP 208
D V+ +D G++ + C H + L+ G CLYHGW + G VK ++
Sbjct: 118 DVDFVVCRDENGKIHAFHNVCSHHASILASGNGRKSCFVCLYHGWTYSLSGSLVKATRMS 177
Query: 209 A 209
Sbjct: 178 G 178
>sp|O85673|ANTDA_ACIAD Anthranilate 1,2-dioxygenase large subunit OS=Acinetobacter sp.
(strain ADP1) GN=antA PE=1 SV=1
Length = 471
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 150 QQIVLYKDGKGELRCHQDRCPHR---LAKLSEGQLIDGRLECLYHGWQFEGEGKCVKI 204
Q +++ +DGKGEL + C HR L ++++G C +H W ++ +G+ VK+
Sbjct: 74 QPMIVSRDGKGELHAMVNACEHRGATLTRVAKGN--QSVFTCPFHAWCYKSDGRLVKV 129
>sp|Q93XE1|CHMO_AMATR Choline monooxygenase, chloroplastic OS=Amaranthus tricolor GN=CMO
PE=2 SV=1
Length = 442
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 151 QIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 210
+ ++ +DG+G++ + C HR + L+ G C YHGW F +G +K +
Sbjct: 147 EYLVCRDGQGKVHAFHNVCTHRASILACGTGKKSCFVCPYHGWVFGLDGSLMKATKTENQ 206
Query: 211 AKIPRSACVRTYEV 224
P+ + T +V
Sbjct: 207 VFDPKELGLVTLKV 220
>sp|O07823|NDOA_PSEFL Naphthalene 1,2-dioxygenase system ferredoxin subunit (Fragment)
OS=Pseudomonas fluorescens GN=ndoA PE=3 SV=1
Length = 87
Score = 38.1 bits (87), Expect = 0.20, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 143 LGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFE---GEG 199
LG+TV + + LY + +GE+ D C H A++S+G L +EC H +F+ G
Sbjct: 3 LGVTVEGKDLALY-EVEGEIYATDDLCTHGAARMSDGYLEGREIECPLHQGRFDVCTGRA 61
Query: 200 KCVKIPQLPADAKIPRSACVRTYEVK 225
C P + ++TY VK
Sbjct: 62 LCA-----------PVTENIKTYAVK 76
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 38.1 bits (87), Expect = 0.21, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 166 QDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVK 225
+D C H +A LSEG L +EC +HG F C +P A P + + +EV+
Sbjct: 43 EDTCTHGIASLSEGTLDGDVIECPFHGGAFN---VCTGMP-----ASSPCTVPLGVFEVE 94
Query: 226 ESQGVVWVWMSQK 238
+G V+V +K
Sbjct: 95 VKEGEVYVAGEKK 107
>sp|P0ABR7|YEAW_ECOLI Putative dioxygenase subunit alpha YeaW OS=Escherichia coli (strain
K12) GN=yeaW PE=3 SV=1
Length = 374
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 147 VFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ-LIDGRLECLYHGWQFEGEG------ 199
+ + IVL + LR + CPHR +L G+ + C YH W F+ +G
Sbjct: 67 IIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHAR 126
Query: 200 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 247
C + +D A + ++E G V++ M D+LP
Sbjct: 127 NCENVANFDSD-----KAQLVPVRLEEYAGFVFINMDPNATSVEDQLP 169
>sp|P0ABR8|YEAW_ECO57 Putative dioxygenase subunit alpha YeaW OS=Escherichia coli O157:H7
GN=yeaW PE=3 SV=1
Length = 374
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 147 VFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ-LIDGRLECLYHGWQFEGEG------ 199
+ + IVL + LR + CPHR +L G+ + C YH W F+ +G
Sbjct: 67 IIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDGNLAHAR 126
Query: 200 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP 247
C + +D A + ++E G V++ M D+LP
Sbjct: 127 NCENVANFDSD-----KAQLVPVRLEEYAGFVFINMDPNATSVEDQLP 169
>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas sp.
(strain C18) GN=doxB PE=1 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 131 LYLTKD----VPDD---APLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID 183
L+LT D P D A +G+ ++++ + G +R + C HR L + +
Sbjct: 40 LFLTHDSLIPAPGDYVTAKMGI----DEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGN 95
Query: 184 GR-LECLYHGWQFEGEGKCVKIP-QLPADAKIPRSACVRTYEVKESQ---GVVWVWMSQK 238
+ C YHGW F G+ +P + + C+ EV + G ++ Q+
Sbjct: 96 AKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQE 155
Query: 239 TPPNPDKL 246
PP D L
Sbjct: 156 APPLMDYL 163
>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=ndoB PE=1 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 131 LYLTKD----VPDD---APLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID 183
L+LT D P D A +G+ ++++ + G +R + C HR L + +
Sbjct: 40 LFLTHDSLIPAPGDYVTAKMGI----DEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGN 95
Query: 184 GR-LECLYHGWQFEGEGKCVKIP-QLPADAKIPRSACVRTYEVKESQ---GVVWVWMSQK 238
+ C YHGW F G+ +P + + C+ EV + G ++ Q+
Sbjct: 96 AKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQE 155
Query: 239 TPPNPDKL 246
PP D L
Sbjct: 156 APPLMDYL 163
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 146 TVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVK 203
T+ + + ++ +DG+G++ + C HR + L+ G C YHGW + G K
Sbjct: 140 TLGNVEYLVCRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMNGSLTK 197
>sp|O04121|CHMO_SPIOL Choline monooxygenase, chloroplastic OS=Spinacia oleracea GN=CMO
PE=1 SV=1
Length = 439
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 151 QIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVK 203
+ ++ +DG+G++ + C HR + L+ G C YHGW + +G K
Sbjct: 144 EYLVSRDGEGKVHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGMDGSLAK 196
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 152 IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIPQLPAD 210
+V+ + G ++ ++C HR ++S + R C YHGW + G+ + +P P
Sbjct: 68 VVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVPLEP-- 125
Query: 211 AKIPRSACVRTYEVKE 226
P+ C + + E
Sbjct: 126 RAYPQGLCKSHWGLNE 141
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 35.8 bits (81), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 122 YDWTEEWYPLYLTKDV--PDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKL-SE 178
Y + + W L V PDD L + Q +++ ++ G++ + C HR A+L
Sbjct: 50 YIFEQNWVFLAHESQVANPDDY-LVSNIGRQPVIITRNKAGDVSAVINACSHRGAELCRR 108
Query: 179 GQLIDGRLECLYHGWQFEGEGKCVKI 204
Q C +HGW F GK +K+
Sbjct: 109 KQGNRSTFTCQFHGWTFSNTGKLLKV 134
>sp|A0R635|Y6410_MYCS2 Putative Rieske 2Fe-2S iron-sulfur protein MSMEG_6410/MSMEI_6242
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_6410 PE=1 SV=1
Length = 518
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 166 QDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGE-GKCV 202
Q RCPH A LS+ +++G L C HGWQ+ E G+C+
Sbjct: 468 QRRCPHLKADLSKFGVVEGNTLTCNLHGWQWNLENGRCL 506
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 152 IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIPQLPAD 210
+V+ + G ++ ++C HR ++S + R C YHGW + G+ + +P P
Sbjct: 68 VVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEP-- 125
Query: 211 AKIPRSACVRTYEVKE 226
P+ C + + E
Sbjct: 126 RAYPQGLCKSHWGLNE 141
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 35.8 bits (81), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 152 IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIPQLPAD 210
+V+ + G ++ ++C HR ++S + R C YHGW + G+ + +P P
Sbjct: 68 VVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEP-- 125
Query: 211 AKIPRSACVRTYEVKE 226
P+ C + + E
Sbjct: 126 RAYPQGLCKSHWGLNE 141
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 128 WYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRL 186
W L +P+ T +Q I + ++ GEL + C HR A L + +
Sbjct: 50 WIYLAHESQIPEKNDYYTTQMGRQPIFITRNKDGELNAFVNACSHRGATLCRFRSGNKAT 109
Query: 187 E-CLYHGWQFEGEGKCVKIPQLPADAKIPRS-ACVRTYEVKE 226
C +HGW F GK +K+ P A P S C ++++K+
Sbjct: 110 HTCSFHGWTFSNSGKLLKVKD-PKGAGYPDSFDCDGSHDLKK 150
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 152 IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGR-LECLYHGWQFEGEGKCVKIPQLPAD 210
+V+ + G ++ ++C HR ++S + R C YHGW + G+ + +P P
Sbjct: 68 VVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVPLEP-- 125
Query: 211 AKIPRSACVRTYEVKE 226
P+ C + + E
Sbjct: 126 RAYPQGLCKSHWGLNE 141
>sp|O07805|Y3818_MYCTU Putative Rieske 2Fe-2S iron-sulfur protein Rv3818/MT3926
OS=Mycobacterium tuberculosis GN=Rv3818 PE=3 SV=1
Length = 516
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 166 QDRCPHRLAKLSEGQLIDGR-LECLYHGWQFE-GEGKCV 202
Q RCPH A LS+ +++G L C HGWQ+ +G+C+
Sbjct: 466 QRRCPHLKADLSKFGVVEGNTLTCNLHGWQWRLDDGRCL 504
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,558,686
Number of Sequences: 539616
Number of extensions: 10734941
Number of successful extensions: 24597
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 24493
Number of HSP's gapped (non-prelim): 107
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)