Query 037348
Match_columns 579
No_of_seqs 439 out of 2388
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 4.5E-87 9.8E-92 732.5 45.7 425 116-574 79-530 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 5E-53 1.1E-57 456.1 34.7 305 123-451 216-534 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 2.1E-49 4.5E-54 411.6 26.0 280 121-410 66-372 (394)
4 COG4638 HcaE Phenylpropionate 100.0 1.5E-42 3.3E-47 369.6 22.6 330 104-446 4-356 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 8.4E-36 1.8E-40 321.5 18.3 193 99-291 10-219 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 2.2E-34 4.7E-39 310.4 12.6 195 97-291 8-217 (438)
7 cd04338 Rieske_RO_Alpha_Tic55 100.0 5.4E-32 1.2E-36 249.0 14.4 125 118-242 8-132 (134)
8 cd03537 Rieske_RO_Alpha_PrnD T 100.0 6.9E-31 1.5E-35 237.7 13.7 114 126-240 2-119 (123)
9 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 4E-30 8.6E-35 240.9 12.1 137 105-241 2-149 (150)
10 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 1.5E-29 3.2E-34 233.9 13.8 124 119-242 9-136 (138)
11 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 4E-29 8.7E-34 228.5 13.4 116 119-239 9-124 (129)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 7.6E-29 1.6E-33 222.3 13.6 112 127-241 1-112 (115)
13 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 7.6E-29 1.7E-33 230.9 13.6 119 120-238 14-133 (144)
14 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 3.6E-28 7.8E-33 224.2 13.8 119 121-241 8-129 (136)
15 cd03532 Rieske_RO_Alpha_VanA_D 100.0 2.7E-28 5.9E-33 219.0 12.5 113 124-240 2-114 (116)
16 cd03538 Rieske_RO_Alpha_AntDO 99.9 8E-28 1.7E-32 224.4 12.1 133 108-240 3-144 (146)
17 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 1E-26 2.3E-31 212.2 12.1 120 121-240 2-126 (128)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 1.5E-26 3.3E-31 208.1 12.9 112 127-238 1-114 (118)
19 cd03539 Rieske_RO_Alpha_S5H Th 99.9 1.2E-26 2.6E-31 212.1 11.9 114 128-241 1-128 (129)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 3.1E-26 6.7E-31 205.6 11.9 113 128-240 1-116 (118)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 1.9E-25 4.2E-30 202.6 12.1 115 126-240 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 4E-25 8.8E-30 200.5 11.9 115 128-242 1-121 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 3E-24 6.4E-29 186.5 11.5 96 128-233 1-97 (98)
24 cd03530 Rieske_NirD_small_Baci 99.9 3.4E-24 7.4E-29 186.4 11.3 97 128-234 1-98 (98)
25 cd03474 Rieske_T4moC Toluene-4 99.9 2.1E-23 4.6E-28 184.7 12.6 102 128-239 1-103 (108)
26 TIGR02377 MocE_fam_FeS Rieske 99.9 1.8E-23 3.9E-28 183.3 11.6 100 127-235 1-101 (101)
27 cd03529 Rieske_NirD Assimilato 99.9 2.2E-23 4.7E-28 183.2 11.2 97 128-234 1-103 (103)
28 cd03542 Rieske_RO_Alpha_HBDO R 99.9 2.9E-23 6.4E-28 188.2 12.3 114 128-241 1-122 (123)
29 TIGR02378 nirD_assim_sml nitri 99.9 3.3E-23 7.2E-28 182.6 10.8 99 127-235 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 1.4E-22 3E-27 179.2 11.3 101 127-238 2-104 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.9E-22 4.2E-27 174.5 10.3 93 130-232 2-95 (95)
32 PF13806 Rieske_2: Rieske-like 99.9 3.4E-21 7.3E-26 169.6 11.7 98 127-234 1-104 (104)
33 PRK09511 nirD nitrite reductas 99.8 9.4E-21 2E-25 168.0 11.2 98 127-234 3-107 (108)
34 PF00355 Rieske: Rieske [2Fe-2 99.8 1.1E-20 2.4E-25 163.6 10.2 93 127-229 1-97 (97)
35 cd03467 Rieske Rieske domain; 99.8 5.9E-20 1.3E-24 159.6 11.1 95 128-231 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.8 6.8E-20 1.5E-24 161.8 11.4 102 126-236 3-106 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 3E-19 6.4E-24 153.6 10.2 88 131-228 2-89 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.8 2.3E-18 5E-23 165.3 12.4 173 263-445 5-195 (196)
39 cd03476 Rieske_ArOX_small Smal 99.7 6.1E-18 1.3E-22 153.8 10.7 96 129-234 4-114 (126)
40 cd03471 Rieske_cytochrome_b6f 99.7 2E-16 4.4E-21 143.2 12.7 83 144-237 29-113 (126)
41 TIGR02694 arsenite_ox_S arseni 99.7 5.6E-16 1.2E-20 141.4 10.5 95 129-233 7-115 (129)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 3.6E-16 7.8E-21 136.6 8.1 71 134-205 14-88 (107)
43 PF08417 PaO: Pheophorbide a o 99.6 6.5E-16 1.4E-20 133.1 7.6 86 332-418 1-86 (92)
44 cd03470 Rieske_cytochrome_bc1 99.6 1.2E-14 2.6E-19 132.3 10.8 92 133-233 5-125 (126)
45 cd00680 RHO_alpha_C C-terminal 99.6 3.5E-14 7.7E-19 135.3 14.6 168 262-445 3-186 (188)
46 PRK13474 cytochrome b6-f compl 99.5 2.1E-13 4.5E-18 131.4 11.1 87 138-235 73-163 (178)
47 cd08885 RHO_alpha_C_1 C-termin 99.4 5.9E-12 1.3E-16 122.0 15.6 170 262-445 4-188 (190)
48 cd08883 RHO_alpha_C_CMO-like C 99.3 1.6E-11 3.4E-16 117.9 12.7 165 263-445 5-173 (175)
49 cd08886 RHO_alpha_C_2 C-termin 99.3 2.2E-11 4.8E-16 117.8 13.6 167 262-444 4-181 (182)
50 cd08887 RHO_alpha_C_3 C-termin 99.3 5.2E-11 1.1E-15 114.5 13.6 168 262-445 4-183 (185)
51 TIGR01416 Rieske_proteo ubiqui 99.3 2E-11 4.4E-16 117.2 9.9 94 127-230 40-169 (174)
52 cd08884 RHO_alpha_C_GbcA-like 99.3 1.2E-10 2.5E-15 114.8 15.5 169 262-445 14-203 (205)
53 PF00848 Ring_hydroxyl_A: Ring 99.2 1.1E-11 2.3E-16 119.7 5.7 167 264-445 12-206 (209)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.9 4.8E-09 1E-13 99.6 7.6 67 159-234 74-159 (171)
55 cd08880 RHO_alpha_C_ahdA1c-lik 98.6 3.5E-07 7.6E-12 91.4 11.4 144 264-418 6-185 (222)
56 PF11723 Aromatic_hydrox: Homo 98.5 3.3E-07 7.3E-12 90.3 8.2 186 251-448 17-238 (240)
57 cd08882 RHO_alpha_C_MupW-like 98.5 7.1E-07 1.5E-11 90.5 10.6 105 328-445 127-241 (243)
58 COG0723 QcrA Rieske Fe-S prote 98.4 3.3E-07 7.1E-12 88.5 6.2 77 148-233 82-164 (177)
59 cd08881 RHO_alpha_C_NDO-like C 98.1 1.1E-05 2.4E-10 79.8 8.9 136 263-416 10-156 (206)
60 KOG1671 Ubiquinol cytochrome c 98.0 6.5E-06 1.4E-10 78.9 5.6 74 133-206 91-190 (210)
61 cd08879 RHO_alpha_C_AntDO-like 98.0 8.4E-06 1.8E-10 82.3 6.3 28 264-291 6-33 (237)
62 TIGR03171 soxL2 Rieske iron-su 97.8 3.9E-05 8.4E-10 79.3 6.7 68 159-235 175-277 (321)
63 KOG1336 Monodehydroascorbate/f 96.6 0.0015 3.2E-08 71.1 3.1 40 171-210 1-41 (478)
64 PF14015 DUF4231: Protein of u 74.1 19 0.0004 31.5 8.1 34 499-532 3-36 (112)
65 PF13490 zf-HC2: Putative zinc 60.6 4.5 9.8E-05 28.1 1.0 19 494-512 18-36 (36)
66 TIGR02949 anti_SigH_actin anti 60.5 9.4 0.0002 32.3 3.2 32 494-525 26-57 (84)
67 PRK10853 putative reductase; P 58.1 6.6 0.00014 35.4 1.9 17 503-519 6-22 (118)
68 PF09740 DUF2043: Uncharacteri 58.1 5.3 0.00011 35.6 1.3 35 160-197 63-99 (110)
69 cd03034 ArsC_ArsC Arsenate Red 55.4 7.5 0.00016 34.5 1.8 17 503-519 5-21 (112)
70 cd03033 ArsC_15kD Arsenate Red 54.6 7.9 0.00017 34.6 1.8 17 503-519 6-22 (113)
71 PF03960 ArsC: ArsC family; I 54.3 7.9 0.00017 34.1 1.8 17 503-519 2-18 (110)
72 COG1393 ArsC Arsenate reductas 51.9 9.4 0.0002 34.4 1.9 17 503-519 7-23 (117)
73 PRK10026 arsenate reductase; P 51.5 9.4 0.0002 35.6 1.8 17 503-519 8-24 (141)
74 COG1645 Uncharacterized Zn-fin 50.1 9.9 0.00021 35.0 1.7 31 164-197 26-56 (131)
75 cd03035 ArsC_Yffb Arsenate Red 49.8 11 0.00023 33.2 1.8 17 503-519 5-21 (105)
76 TIGR00014 arsC arsenate reduct 47.8 12 0.00025 33.4 1.8 17 503-519 5-21 (114)
77 PRK13344 spxA transcriptional 43.5 15 0.00033 33.7 1.9 17 503-519 6-22 (132)
78 PF14015 DUF4231: Protein of u 41.9 1.6E+02 0.0034 25.5 8.1 43 495-537 2-44 (112)
79 TIGR01616 nitro_assoc nitrogen 41.2 17 0.00037 33.2 1.8 17 503-519 7-23 (126)
80 cd03036 ArsC_like Arsenate Red 40.0 18 0.0004 31.9 1.8 17 503-519 5-21 (111)
81 PRK12559 transcriptional regul 35.7 23 0.00051 32.4 1.8 17 503-519 6-22 (131)
82 cd03032 ArsC_Spx Arsenate Redu 33.3 27 0.00059 30.9 1.9 17 503-519 6-22 (115)
83 cd02977 ArsC_family Arsenate R 31.3 31 0.00067 29.9 1.8 17 503-519 5-21 (105)
84 PRK01655 spxA transcriptional 30.9 31 0.00068 31.5 1.8 17 503-519 6-22 (131)
85 TIGR01617 arsC_related transcr 30.8 32 0.00069 30.6 1.9 17 503-519 5-21 (117)
86 PF11572 DUF3234: Protein of u 29.7 25 0.00055 30.3 0.9 51 123-177 4-54 (103)
87 PF11239 DUF3040: Protein of u 29.5 89 0.0019 26.1 4.2 17 401-417 5-21 (82)
88 PF10080 DUF2318: Predicted me 26.4 3.9E+02 0.0084 23.6 7.8 81 136-235 1-92 (102)
89 KOG4684 Uncharacterized conser 25.6 2E+02 0.0044 28.7 6.4 19 495-513 180-198 (275)
90 PF05055 DUF677: Protein of un 25.3 1.6E+02 0.0034 31.6 6.2 13 512-524 171-183 (336)
91 KOG4684 Uncharacterized conser 24.7 17 0.00037 36.0 -1.0 20 495-514 91-110 (275)
92 PF09788 Tmemb_55A: Transmembr 23.7 17 0.00038 37.0 -1.3 19 495-513 76-94 (256)
93 PF12266 DUF3613: Protein of u 23.3 1.5E+02 0.0033 24.1 4.3 50 399-454 14-63 (67)
94 PF07009 DUF1312: Protein of u 22.4 1.1E+02 0.0023 27.2 3.7 62 127-193 36-102 (113)
95 PF14446 Prok-RING_1: Prokaryo 22.3 41 0.0009 26.2 0.8 24 182-205 18-46 (54)
96 PRK00420 hypothetical protein; 21.6 66 0.0014 28.9 2.1 32 164-197 21-52 (112)
97 cd03027 GRX_DEP Glutaredoxin ( 21.3 64 0.0014 25.7 1.8 17 504-520 8-24 (73)
98 PF11026 DUF2721: Protein of u 20.1 5.8E+02 0.013 23.2 8.1 34 543-576 96-129 (130)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=4.5e-87 Score=732.55 Aligned_cols=425 Identities=31% Similarity=0.596 Sum_probs=344.9
Q ss_pred hcccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEe-CCCeEEeecCCCCCCCCcccCCccc-cceEEccCcce
Q 037348 116 ERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-GKGELRCHQDRCPHRLAKLSEGQLI-DGRLECLYHGW 193 (579)
Q Consensus 116 ~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~-~~G~~~a~~d~CpHrgapLs~G~v~-~g~l~CpyHGW 193 (579)
...+.+++|+++||+||.++||++++++.++++|++|||||+ .+|+++||+|+||||+++||+|+++ ++.|+||||||
T Consensus 79 ~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW 158 (539)
T PLN02518 79 ESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGW 158 (539)
T ss_pred cccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCC
Confidence 345678999999999999999988889999999999999998 8999999999999999999999996 78999999999
Q ss_pred EEcCCCceeecCCCCCCC-----CCCccCccceEEEEEecCeEEEEcCCCC--CCCCCCCCccc-cccCCCceeeeEEEE
Q 037348 194 QFEGEGKCVKIPQLPADA-----KIPRSACVRTYEVKESQGVVWVWMSQKT--PPNPDKLPWFE-NFARPGFQDVSTIHE 265 (579)
Q Consensus 194 ~Fd~dG~c~~iP~~~~~~-----~~~~~~~l~~ypv~~~~G~V~V~~~~~~--~~~~~~lP~~~-~~~~~~~~~~~~~~~ 265 (579)
+||++|+|+.||+.+... .+++++|+++|||+|++|+||||+++++ .++...+|.++ ++++++|......++
T Consensus 159 ~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~~~~~~ 238 (539)
T PLN02518 159 SFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVTIQRD 238 (539)
T ss_pred EEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeEEEEEE
Confidence 999999999999865332 2456788999999999999999998752 34456778774 778888987777889
Q ss_pred eccChHhHhhcCCCCCCCcccccccccccccccCCCceEEEeecccCCcccccCCCCCCCCceEEEEecCeeeeeeceee
Q 037348 266 LPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQNNRESV 345 (579)
Q Consensus 266 ~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~~Gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~ 345 (579)
++|+|++++||++|++|++|+|++++ ++++++.+..++++..+..||.+.+. .+.+...+|.+||++.+.+...
T Consensus 239 ~~~~~~~l~EN~lD~sH~pfvH~~~~--G~~~~~~~~~~~v~~~~~~Gf~g~~~----~~~~~~~~F~~P~~~~~~~~~~ 312 (539)
T PLN02518 239 LFYGYDTLMENVSDPSHIDFAHHKVT--GRRDRAKPLPFKVESSGPWGFAGANS----DNPRITAKFVAPCYYINKIEID 312 (539)
T ss_pred EecCchhHHHhCCccchhceeccccc--cCccccccccceEEEcCCCccccccc----CCCceEEEEECCeEEEEeeeee
Confidence 99999999999999999999999986 45667677778887655567765331 2344568899999987765442
Q ss_pred cC--CCCC-eeeEEEEEEeeeCCCCeEEEEEEEecCCC------CCccccCchhHhhHhhhhHHHHHHHHHHHHHHhhhh
Q 037348 346 DN--KTGE-KHYSTGLFLCRPTGQGKSMLIVRFGTTGT------SPWIKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLK 416 (579)
Q Consensus 346 ~~--~~G~-~~~~~~v~~~~Pv~pg~trli~~f~~~~~------~~~~k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~ 416 (579)
.. ..|. ...+..+++++|+++|+||+++++.+++. ..+.+++|+|+.|..+++||+||+.+||.||+.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~h~~~n~Vl~~D~~~lh~Qe~~~~~ 392 (539)
T PLN02518 313 TKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLS 392 (539)
T ss_pred ccccCCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHHHhhhccchHhHHHHHHHHHHHHhh
Confidence 10 0111 12244567889999999999988777653 123489999999999999999999999999999876
Q ss_pred cCC--------CCccccccccccCHHHHHHHHHHHHhCCCCCCcCCCcCCCCCCCccccccCCCccccccccCCCCCCCC
Q 037348 417 EKV--------PTKELYFNLRSIDTWVAEYRKWMDKAGHGMPYYFGHSTISLPKVPAVVEHAPAGLVAGVSASLPAKGGI 488 (579)
Q Consensus 417 ~~~--------~~k~~y~~~~~sD~~VvafRrWL~k~g~g~P~~~g~~~~~lp~~p~~~~~~p~~~~~~~~~~~p~~~~~ 488 (579)
.+. .++..|++|+++|++|++|||||+++|+|+|.|++..+.. ++ +|+
T Consensus 393 ~~~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~-~~-------------------lp~---- 448 (539)
T PLN02518 393 KSGEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQ-QP-------------------LPS---- 448 (539)
T ss_pred ccccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCccc-CC-------------------CCC----
Confidence 543 2334555579999999999999999999888887643211 11 111
Q ss_pred CCCCchhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037348 489 GTMHAPNLANRYFRHVIHCKGCRSAVKAFNTWKNSLSTAAALLTALAILGAGRQWRAFCLVSASLCLAGVYACSTAISMN 568 (579)
Q Consensus 489 ~~~~~~qllDRy~~HT~~C~sC~~Alk~~~~l~~~l~~~~va~~~~a~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~ 568 (579)
..++++||||||||||+||+||++|||+|+++|+++++++++++++++++...++++++++++++++++.+.+.+ +
T Consensus 449 ~~~~~~~lldRy~~Ht~~C~SC~~Alk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 524 (539)
T PLN02518 449 TVLSKRQMLDRFEQHTLNCSSCKGAYKAFQTLQKVLIGATVVFAATAGIPSDVQLRLILAGLALISAASAYALKE----L 524 (539)
T ss_pred CCCCHHHHhHHHHhhCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH----H
Confidence 124789999999999999999999999999999999999999999888888878888888877777777776554 8
Q ss_pred hccchh
Q 037348 569 TTNFIR 574 (579)
Q Consensus 569 ~~~~~~ 574 (579)
+++|+.
T Consensus 525 ~~~f~~ 530 (539)
T PLN02518 525 EKNFVF 530 (539)
T ss_pred Hhhcee
Confidence 888875
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=5e-53 Score=456.12 Aligned_cols=305 Identities=24% Similarity=0.555 Sum_probs=234.0
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCcee
Q 037348 123 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 202 (579)
Q Consensus 123 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~ 202 (579)
.|++.||+|+.++||++++++.++++|++|||||+.+|+++|++|+|||||+||++|+++++.|+||||||+||.||+|+
T Consensus 216 ~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv 295 (536)
T PLN02281 216 HLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECK 295 (536)
T ss_pred hhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEe
Confidence 78999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccccccCC-Cceeee-EEEEeccChHhHhhcCCCC
Q 037348 203 KIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARP-GFQDVS-TIHELPYDHSILLENLMDP 280 (579)
Q Consensus 203 ~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~~~~~~~-~~~~~~-~~~~~~~~~~~lvEN~lD~ 280 (579)
.+|+.+ +.+.++++|||+|++|+||||++++++ .|.++.++++ +|.... ..+++++||++++||++|+
T Consensus 296 ~iP~~~-----~~~~~l~sYPV~e~~GlVwV~lgd~~~-----aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~ 365 (536)
T PLN02281 296 KMPSTK-----LLKVKIKSLPCLEQEGMIWIWPGDEPP-----APILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDL 365 (536)
T ss_pred eCCCCc-----cccCCcceEeEEEECCEEEEEeCCCCC-----CCCCccccCcccceEEEEEEEEecCCHHHHHHhcccc
Confidence 999753 246789999999999999999986432 2555666655 565433 4788999999999999999
Q ss_pred CCCcccccccccccccccCCCceEEEeecccCCcccccCCCCCCCCceEEEEecCeeeeeeceeecCCCC----C---ee
Q 037348 281 AHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQNNRESVDNKTG----E---KH 353 (579)
Q Consensus 281 ~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~~Gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G----~---~~ 353 (579)
+|++|+|+++++. ..+. +...+... ...++.+.|... ...++|.+||++.+.+.+.+.+.+ . ..
T Consensus 366 ~H~~fvH~~t~g~--~~~~-p~~v~~~~-~~~~~~p~~~~~-----pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~ 436 (536)
T PLN02281 366 AHAPFTHTSTFAK--GWSV-PSLVKFLT-PTSGLQGYWDPY-----PIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCAT 436 (536)
T ss_pred ccccccCcccccC--cccC-CceeEEec-ccCCCCcccccC-----CceEEEECcEEEEEeeccccCCcccccccccccc
Confidence 9999999999753 2222 22222221 122333333221 236899999999987655331110 0 01
Q ss_pred eEEEEEEeeeCCCCeEEEEEEEecCCCCCc--cccCchhHhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCcccccccccc
Q 037348 354 YSTGLFLCRPTGQGKSMLIVRFGTTGTSPW--IKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSI 431 (579)
Q Consensus 354 ~~~~v~~~~Pv~pg~trli~~f~~~~~~~~--~k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~s 431 (579)
....+++|+|+++++||+++++.+++...+ ..+...|+ +.+.+.+|+||+.|||.||+.+.... ..++.+.++
T Consensus 437 ~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l-~~~~~~vF~ED~~iLEaQQ~~i~~~~----~~~~l~l~a 511 (536)
T PLN02281 437 HLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLW-RHFAEQVLNEDLRLVLGQQERMLNGA----NIWNLPVAY 511 (536)
T ss_pred ceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHH-HHHhhHhhHhHHHHHHHHHHHhhccc----ccccccchh
Confidence 234678899999999999999998886542 22223332 34677899999999999999986531 223345778
Q ss_pred CHHHHHHHHHHHHh---CCCCCC
Q 037348 432 DTWVAEYRKWMDKA---GHGMPY 451 (579)
Q Consensus 432 D~~VvafRrWL~k~---g~g~P~ 451 (579)
|+++++|||||+++ +++.||
T Consensus 512 D~~~v~~RRWl~~~~~~~~~~pf 534 (536)
T PLN02281 512 DKLGVRYRLWRNAVDRGDDKLPF 534 (536)
T ss_pred hHHHHHHHHHHHHhhcccCCCCC
Confidence 99999999999987 445665
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=2.1e-49 Score=411.55 Aligned_cols=280 Identities=23% Similarity=0.447 Sum_probs=223.2
Q ss_pred cccccCCeEEeeecCCC-CCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCC
Q 037348 121 DYDWTEEWYPLYLTKDV-PDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEG 199 (579)
Q Consensus 121 ~~~~~~~W~~v~~~~dl-~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG 199 (579)
...-+++||+|++++|| ++++++.++++|++|+|||+.+|+++||+|.||||+++|++|+++++.|+||||||+||.+|
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G 145 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG 145 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence 34457999999999999 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCC------------C----CCC-CccccccCCCceeeeE
Q 037348 200 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN------------P----DKL-PWFENFARPGFQDVST 262 (579)
Q Consensus 200 ~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~------------~----~~l-P~~~~~~~~~~~~~~~ 262 (579)
+|+.+|+... +.++.++++|||++++|+||||+++..+++ . ..+ |.+++. ++|..+..
T Consensus 146 ~C~~iP~~~~---~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~--~gf~~~ae 220 (394)
T PLN00095 146 ECAKMPSCKK---FLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPG--EGFTPMAE 220 (394)
T ss_pred CEeeCCCccc---cccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCC--CCceEEEE
Confidence 9999997532 344578999999999999999998654431 0 122 345543 47877544
Q ss_pred -EEEeccChHhHhhcCCCCCCC-ccccccccc--ccccccCCCceEEEeecccCCcccccCCCCCCCCceEEEEecCeee
Q 037348 263 -IHELPYDHSILLENLMDPAHI-PISHDRTDY--SAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVL 338 (579)
Q Consensus 263 -~~~~~~~~~~lvEN~lD~~H~-pfvH~~~~~--~~~r~~~~p~~~~v~~~~~~Gf~~~~~~~~~~~~~~~~~F~~P~~~ 338 (579)
++|+||+|.++|||+||++|+ ||+|+.++- .++|.++.++..++......++.+.|. .++..++|.+||++
T Consensus 221 v~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~-----~~p~~~~F~ppc~~ 295 (394)
T PLN00095 221 VIADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRD-----AVPQSATFKPACVI 295 (394)
T ss_pred EEEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecc-----cCCcceeEcCceee
Confidence 689999999999999999995 888876541 356666666666666555667776664 25667889999999
Q ss_pred eeeceeecC---CCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCC--CccccCchhHhhHhhhhHHHHHHHHHHHH
Q 037348 339 QNNRESVDN---KTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTS--PWIKLFPDWYFHQSASKVFEQDMGFLSSQ 410 (579)
Q Consensus 339 ~~~~~~~~~---~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~--~~~k~~p~W~~h~~~~~VldeD~~iLe~Q 410 (579)
..++++.+. .+|..+++.++++|+|.++|+|||++|+..+|.. .+.+.+|.-+...+.++||.||++++.+-
T Consensus 296 ~s~i~l~~~~g~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~~~w~~~a~~vl~e~l~~v~~~ 372 (394)
T PLN00095 296 ASTIALEDGPGGGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAGDVWANLAMMVLKEELEDVRAA 372 (394)
T ss_pred eeeecccccCCCCccccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchHHHHHHHHHHHHHHHHHHHhcc
Confidence 998887541 2233467889999999999999999999998853 34555564344567899999999888753
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=1.5e-42 Score=369.63 Aligned_cols=330 Identities=20% Similarity=0.361 Sum_probs=228.9
Q ss_pred ccCCCCccChhhhcccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcccc
Q 037348 104 LVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID 183 (579)
Q Consensus 104 ~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~ 183 (579)
.++...|++++.++++.+.+|.++||+||+++||+++++++++++|+++||||++||+|+||+|.|||||++||+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~ 83 (367)
T COG4638 4 RLPPPFYTDPELFQLELERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGG 83 (367)
T ss_pred cCCCccccCHHHHHHHHHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCC
Confidence 67888999999999999999999999999999999989999999999999999999999999999999999999999987
Q ss_pred -ceEEccCcceEEcCCCceeecCCCCCCCCCC-ccCccceEEEEEecCeEEEEcCCCCCCCCC-CCCccc-cccCCCcee
Q 037348 184 -GRLECLYHGWQFEGEGKCVKIPQLPADAKIP-RSACVRTYEVKESQGVVWVWMSQKTPPNPD-KLPWFE-NFARPGFQD 259 (579)
Q Consensus 184 -g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~-~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~-~lP~~~-~~~~~~~~~ 259 (579)
+.|+||||||+||.+|+|+.+|+......++ ++.++++|||++++|+||||+++++++... .+|..+ +.++.....
T Consensus 84 ~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 163 (367)
T COG4638 84 KGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAFLPPAEPYEDDRSRLGG 163 (367)
T ss_pred CceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHhcccccccccccccccC
Confidence 8999999999999999999999543333444 456899999999999999999988765322 334444 333322222
Q ss_pred eeEEEEeccChHhHhhcCCC-CCCCcccccccccccccccCCCceEEEe------ecccCCc------cccc--CCC--C
Q 037348 260 VSTIHELPYDHSILLENLMD-PAHIPISHDRTDYSAKREDAQPLGFEVT------ERTDRGF------AGQW--GRE--K 322 (579)
Q Consensus 260 ~~~~~~~~~~~~~lvEN~lD-~~H~pfvH~~~~~~~~r~~~~p~~~~v~------~~~~~Gf------~~~~--~~~--~ 322 (579)
.....++++||++++||++| ++|++|+|+++.+............+.. ......+ .... ... .
T Consensus 164 ~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~ 243 (367)
T COG4638 164 GSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQPLGSEASSYGFDGNYE 243 (367)
T ss_pred ceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccCCcchhhhccccccccc
Confidence 34567899999999998888 9999999998765433221101111100 0000000 0000 000 0
Q ss_pred CCCCceEEEEecCee-eeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCC-CCCccccCchhHhhHhhhhHH
Q 037348 323 DGSMPNFLRFEAPCV-LQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTG-TSPWIKLFPDWYFHQSASKVF 400 (579)
Q Consensus 323 ~~~~~~~~~F~~P~~-~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~-~~~~~k~~p~W~~h~~~~~Vl 400 (579)
.........|..|+. ..+... .+ ...++...|+++++|.+........ .....+....+ .....+.++
T Consensus 244 ~~~~~~~~~~~~p~~~~~~~~~-----~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 313 (367)
T COG4638 244 VHVPGAYLLFLYPNSTVWNHVT-----VD----DVIVFFVQPIDEDETMVTLVWLVLPDLVEGVDYFDKL-IRRFRQEIL 313 (367)
T ss_pred cccCceeEEEEcCCchheeeec-----cc----ceeEEEEEecCCceeEEEeeeeeccchhhHHHHHHHH-HHHHhccCc
Confidence 112345677888873 333221 11 1234445799999999865532221 11111111111 223456699
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhC
Q 037348 401 EQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAG 446 (579)
Q Consensus 401 deD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g 446 (579)
+||..|+|.||+.+.+.... ...+ +...|...+++|+|+.+..
T Consensus 314 ~qD~~i~e~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~ 356 (367)
T COG4638 314 DQDREILENQQPGRLSPALE-RGPY--PIREDAGSVQFRRWLAERL 356 (367)
T ss_pred HHHHHHHHHHhccccccccc-CCCc--cccccchhhHHHHHHHHHH
Confidence 99999999999966554321 1233 2346889999999998763
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=8.4e-36 Score=321.54 Aligned_cols=193 Identities=16% Similarity=0.223 Sum_probs=157.4
Q ss_pred CCCCcccCCCCccChhhhcccccccccCCeEEeeecCCCCCCC-cEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCccc
Q 037348 99 DDHKVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLS 177 (579)
Q Consensus 99 ~d~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~-~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs 177 (579)
.+....+|.+.|+|+++++.|.+.+|.+.|+.||+.+||++++ ..++.+.|++|+|+|+++|+++||.|+|||||++|+
T Consensus 10 ~~~~~~~~~~~Ytd~~~f~~E~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~ 89 (433)
T TIGR03229 10 EKGIFRCKREMFTDPELFDLEMKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLC 89 (433)
T ss_pred ccCCccCChhhcCCHHHHHHHHHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCcc
Confidence 3445579999999999999999999999999999999998765 577889999999999999999999999999999999
Q ss_pred CCcc-ccceEEccCcceEEcCCCceeecCCCCCC---CCCCc--cCccceEE-EEEecCeEEEEcCCCCCCCCCCCCcc-
Q 037348 178 EGQL-IDGRLECLYHGWQFEGEGKCVKIPQLPAD---AKIPR--SACVRTYE-VKESQGVVWVWMSQKTPPNPDKLPWF- 249 (579)
Q Consensus 178 ~G~v-~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~---~~~~~--~~~l~~yp-v~~~~G~V~V~~~~~~~~~~~~lP~~- 249 (579)
.|.. +.+.|+||||||+||.||+|+.+|..... ..+.+ ..+|+.++ ++.++|+|||++++++++..+.++.+
T Consensus 90 ~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~l~e~Lg~~~ 169 (433)
T TIGR03229 90 RHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLPLEEHLGETA 169 (433)
T ss_pred cccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCCHHHHhhhHH
Confidence 9864 56799999999999999999999974321 12222 45789996 66679999999998876665555332
Q ss_pred ---ccccC---CCceeee--EEEEeccChHhHhhcCCCCCCCcccccccc
Q 037348 250 ---ENFAR---PGFQDVS--TIHELPYDHSILLENLMDPAHIPISHDRTD 291 (579)
Q Consensus 250 ---~~~~~---~~~~~~~--~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~ 291 (579)
+.+.+ .++..+. ..+++++|||+++||++|.||++++|.++.
T Consensus 170 ~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~ 219 (433)
T TIGR03229 170 KIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYA 219 (433)
T ss_pred HHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHH
Confidence 11111 2333332 356799999999999999999999998764
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=2.2e-34 Score=310.36 Aligned_cols=195 Identities=17% Similarity=0.280 Sum_probs=158.4
Q ss_pred CCCCCCcccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCc
Q 037348 97 TPDDHKVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAK 175 (579)
Q Consensus 97 ~p~d~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgap 175 (579)
.|.+....++.+.|+|++++++|.+.+|.+.|+.||+.+||++ +.++++++++++|||+|+++|+++||.|+|||||++
T Consensus 8 ~~~~~~~~v~~~~ytd~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~ 87 (438)
T TIGR03228 8 RPNDGVFRIARDMFTEPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGAT 87 (438)
T ss_pred CCccCceecChheECCHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCc
Confidence 3445566799999999999999999999999999999999987 558999999999999999999999999999999999
Q ss_pred ccC-CccccceEEccCcceEEcCCCceeecCCCCCC-CCCC-ccCccceEEEEEecCeEEEEcCCCCC-CCCCCCCc---
Q 037348 176 LSE-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD-AKIP-RSACVRTYEVKESQGVVWVWMSQKTP-PNPDKLPW--- 248 (579)
Q Consensus 176 Ls~-G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~-~~~~-~~~~l~~ypv~~~~G~V~V~~~~~~~-~~~~~lP~--- 248 (579)
|+. +.++...++||||||+||.||+|+.+|..... ..++ ....|+.++|.+++|+||++++++++ +..+.+..
T Consensus 88 L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~lg~~~~ 167 (438)
T TIGR03228 88 LTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFLGDARV 167 (438)
T ss_pred cccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHhhhHHH
Confidence 996 77777899999999999999999999954221 1222 34568889999999999999998753 33333321
Q ss_pred -ccccc----CCCceeee--EEEEeccChHhHhhcCCCCCCCcccccccc
Q 037348 249 -FENFA----RPGFQDVS--TIHELPYDHSILLENLMDPAHIPISHDRTD 291 (579)
Q Consensus 249 -~~~~~----~~~~~~~~--~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~ 291 (579)
++.+. ..+++.+. ..+++++|||+.+||++|.||++++|..+.
T Consensus 168 ~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~ 217 (438)
T TIGR03228 168 FLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYV 217 (438)
T ss_pred HHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhH
Confidence 22221 11244332 246899999999999999999999998764
No 7
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.98 E-value=5.4e-32 Score=249.03 Aligned_cols=125 Identities=77% Similarity=1.507 Sum_probs=114.6
Q ss_pred ccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC
Q 037348 118 RVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 197 (579)
Q Consensus 118 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~ 197 (579)
...+++|++.|++|+.++||++++++.++++|++|+|||+.+|+++||+|+|||||++|+.|.++++.|+||||||+||.
T Consensus 8 ~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~ 87 (134)
T cd04338 8 NVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGG 87 (134)
T ss_pred cccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECC
Confidence 34678999999999999999999899999999999999998999999999999999999999999999999999999999
Q ss_pred CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCC
Q 037348 198 EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN 242 (579)
Q Consensus 198 dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~ 242 (579)
+|+|+.+|..+....++...+|++|+|++++|+|||++++.++++
T Consensus 88 ~G~~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~~~ 132 (134)
T cd04338 88 EGKCVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATPPD 132 (134)
T ss_pred CCCEEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCCCC
Confidence 999999998765555666778999999999999999998766554
No 8
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=6.9e-31 Score=237.69 Aligned_cols=114 Identities=32% Similarity=0.721 Sum_probs=103.7
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecC
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
..||+|+.++||+ +++..++++|+++||||+.+|+++|++|+||||+++|++|+++++.|+||||||+||.+|+|+.||
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCC----CCCCccCccceEEEEEecCeEEEEcCCCCC
Q 037348 206 QLPAD----AKIPRSACVRTYEVKESQGVVWVWMSQKTP 240 (579)
Q Consensus 206 ~~~~~----~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~ 240 (579)
+.+.. ..++++.++++|||+|++|+||||++++.+
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 86542 235667889999999999999999986543
No 9
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.96 E-value=4e-30 Score=240.85 Aligned_cols=137 Identities=21% Similarity=0.351 Sum_probs=121.3
Q ss_pred cCCCCccChhhhccccccccc-CCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc-c
Q 037348 105 VGPASEEESRGERRVADYDWT-EEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ-L 181 (579)
Q Consensus 105 ~p~~~y~~~~~~~~e~~~~~~-~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~-v 181 (579)
+|.+.|+|++.++.|.+.+|+ +.|++|+.++||++ ++...+.+.|++|+|+|+.+|+++|++|+|||||++|++|. +
T Consensus 2 ~~~~~y~d~~~~~~E~~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g 81 (150)
T cd03545 2 VPYKVFTDRAYFDREQERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG 81 (150)
T ss_pred CChhhccCHHHHHHHHHhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEecccccC
Confidence 578899999999999999998 99999999999985 67888999999999999889999999999999999999985 4
Q ss_pred ccceEEccCcceEEcCCCceeecCCCCCCC-------CC-CccCccceEEEEEecCeEEEEcCCCCCC
Q 037348 182 IDGRLECLYHGWQFEGEGKCVKIPQLPADA-------KI-PRSACVRTYEVKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 182 ~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~-------~~-~~~~~l~~ypv~~~~G~V~V~~~~~~~~ 241 (579)
+++.|+||||||+||++|+|+.+|...... .+ ++..+|++|+|++++|+|||+++++++|
T Consensus 82 ~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~~p 149 (150)
T cd03545 82 NDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEVEP 149 (150)
T ss_pred CCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCCCC
Confidence 578999999999999999999999864321 12 2456799999999999999999976543
No 10
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.96 E-value=1.5e-29 Score=233.91 Aligned_cols=124 Identities=37% Similarity=0.840 Sum_probs=110.1
Q ss_pred cccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeC-CCeEEeecCCCCCCCCcccCCccc-cceEEccCcceEEc
Q 037348 119 VADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG-KGELRCHQDRCPHRLAKLSEGQLI-DGRLECLYHGWQFE 196 (579)
Q Consensus 119 e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~-~G~~~a~~d~CpHrgapLs~G~v~-~g~l~CpyHGW~Fd 196 (579)
..++.|++.|++|+.++||++++++.++++|++|+|+|+. +|+++||+|+|||||++|+.|.+. ++.|+||||||+||
T Consensus 9 ~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd 88 (138)
T cd03480 9 SDKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD 88 (138)
T ss_pred cccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC
Confidence 4567899999999999999998999999999999999986 999999999999999999999885 57999999999999
Q ss_pred CCCceeecCCCCCCCC--CCccCccceEEEEEecCeEEEEcCCCCCCC
Q 037348 197 GEGKCVKIPQLPADAK--IPRSACVRTYEVKESQGVVWVWMSQKTPPN 242 (579)
Q Consensus 197 ~dG~c~~iP~~~~~~~--~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~ 242 (579)
.+|+|+.+|....... .+...++++|||++++|+|||+++++.+++
T Consensus 89 ~tG~~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~~~ 136 (138)
T cd03480 89 GSGSCQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPENAK 136 (138)
T ss_pred CCCCEEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHhcc
Confidence 9999999998654332 234578999999999999999998766543
No 11
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=4e-29 Score=228.47 Aligned_cols=116 Identities=33% Similarity=0.796 Sum_probs=106.2
Q ss_pred cccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCC
Q 037348 119 VADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE 198 (579)
Q Consensus 119 e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~d 198 (579)
+....|++.||+|+.++||++++++.++++|++++|+|+.+|+++|++|+|||||++|++|.++++.|+||||||+||.+
T Consensus 9 ~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw~Fd~t 88 (129)
T cd04337 9 ELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGWEYDGD 88 (129)
T ss_pred cccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCCEECCC
Confidence 34568899999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 199 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 199 G~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
|+|+.+|..+ +...++++|||++++|+||||++++.
T Consensus 89 G~~~~~P~~~-----~~~~~l~~y~v~v~~g~V~V~~~~~~ 124 (129)
T cd04337 89 GECTKMPSTK-----CLNVGIAALPCMEQDGMIWVWPGDDP 124 (129)
T ss_pred CCEEeCCcCC-----CccCCcceEeEEEECCEEEEEcCCCC
Confidence 9999999643 23457999999999999999998654
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=7.6e-29 Score=222.30 Aligned_cols=112 Identities=29% Similarity=0.690 Sum_probs=103.2
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecCC
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQ 206 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP~ 206 (579)
.|++|+.++||++++++.++++|++|+|||+.+|+++|++|+|||||++|++|.++++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 59999999999999999999999999999998999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 037348 207 LPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 207 ~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~ 241 (579)
.. .++...++++|||++++|+|||+++++..+
T Consensus 81 ~~---~~p~~~~l~~ypv~~~~g~v~v~~~~~~~~ 112 (115)
T cd03531 81 AR---RVPPLARTRAWPTLERNGQLFVWHDPEGNP 112 (115)
T ss_pred cc---CCCcccccceEeEEEECCEEEEECCCCCCC
Confidence 43 245567799999999999999999987653
No 13
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=7.6e-29 Score=230.86 Aligned_cols=119 Identities=29% Similarity=0.713 Sum_probs=108.5
Q ss_pred ccccccCCeEEeeecCCCC-CCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCC
Q 037348 120 ADYDWTEEWYPLYLTKDVP-DDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE 198 (579)
Q Consensus 120 ~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~d 198 (579)
.+.+|.+.|++|+.++||+ +++++.++++|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+
T Consensus 14 ~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~Hgw~F~~~ 93 (144)
T cd03479 14 MGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYHGWKFDVD 93 (144)
T ss_pred hhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCCCcEECCC
Confidence 4678999999999999999 578999999999999999989999999999999999999999988999999999999999
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 037348 199 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 238 (579)
Q Consensus 199 G~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~ 238 (579)
|+|+.+|+.+.....+...+|++|+|++++|+|||++++.
T Consensus 94 G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~ 133 (144)
T cd03479 94 GQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPA 133 (144)
T ss_pred CCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCC
Confidence 9999999865544445667899999999999999999753
No 14
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=3.6e-28 Score=224.21 Aligned_cols=119 Identities=28% Similarity=0.667 Sum_probs=104.3
Q ss_pred cccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc--cccceEEccCcceEEcC-
Q 037348 121 DYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQFEG- 197 (579)
Q Consensus 121 ~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~--v~~g~l~CpyHGW~Fd~- 197 (579)
++.|.+.|++|+.++||++++++.++++|++|+|+| .+|+++|++|+|||||++|+.|. ++++.|+||||||+||.
T Consensus 8 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 8 KWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLD 86 (136)
T ss_pred ccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCC
Confidence 458999999999999999999999999999999999 59999999999999999999986 45789999999999997
Q ss_pred CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 037348 198 EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 198 dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~ 241 (579)
+|+|+.+|..+.. ..+...+|++|||++++|+|||++++...+
T Consensus 87 tG~~~~~~~~p~~-~~~~~~~L~~ypv~~~~g~V~v~~~~~~~~ 129 (136)
T cd03548 87 DGKLVTILANPDD-PLIGRTGLKTYPVEEAKGMIFVFVGDGDYA 129 (136)
T ss_pred CccEEEcccCCCc-cccccCCCceEeEEEECCEEEEEeCCcccC
Confidence 8999999865432 223356799999999999999999875544
No 15
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=2.7e-28 Score=219.02 Aligned_cols=113 Identities=37% Similarity=0.846 Sum_probs=103.6
Q ss_pred ccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceee
Q 037348 124 WTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVK 203 (579)
Q Consensus 124 ~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~ 203 (579)
+++.|++|+.++||+ +++..+++.|++++|+|+.+|+++|++|+|||||++|+.|.++++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 8889999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCC
Q 037348 204 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTP 240 (579)
Q Consensus 204 iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~ 240 (579)
+|..+. .+...++++|||++++|+|||++++++.
T Consensus 81 ~p~~~~---~~~~~~l~~~~v~~~~g~v~v~~~~~~~ 114 (116)
T cd03532 81 MPGQER---VPAKACVRSYPVVERDALIWIWMGDAAL 114 (116)
T ss_pred CCCCCC---CCCccccccCCEEEECCEEEEEcCCccc
Confidence 997532 3456789999999999999999987653
No 16
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.95 E-value=8e-28 Score=224.37 Aligned_cols=133 Identities=19% Similarity=0.324 Sum_probs=116.3
Q ss_pred CCccChhhhcccccccccCCeEEeeecCCCC-CCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCC-ccc-cc
Q 037348 108 ASEEESRGERRVADYDWTEEWYPLYLTKDVP-DDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEG-QLI-DG 184 (579)
Q Consensus 108 ~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~-~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G-~v~-~g 184 (579)
+.|+|++.++.|.+.+|.+.|++|+.++||+ +|+...+++.|++|+|+|+.+|+++|+.|+|||||++|+.+ .+. ++
T Consensus 3 ~~y~~~~~~~~e~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~ 82 (146)
T cd03538 3 DVYTDPEIFALEMERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGK 82 (146)
T ss_pred ceEcCHHHHHHHHHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCC
Confidence 5799999999999999999999999999998 46789999999999999998999999999999999999754 344 56
Q ss_pred eEEccCcceEEcCCCceeecCCCCCCC--CCC---ccCccceE-EEEEecCeEEEEcCCCCC
Q 037348 185 RLECLYHGWQFEGEGKCVKIPQLPADA--KIP---RSACVRTY-EVKESQGVVWVWMSQKTP 240 (579)
Q Consensus 185 ~l~CpyHGW~Fd~dG~c~~iP~~~~~~--~~~---~~~~l~~y-pv~~~~G~V~V~~~~~~~ 240 (579)
.|+||||||+||.||+|+.+|...... .+. ...+|+.+ .|++++|+|||+++++++
T Consensus 83 ~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 83 FFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred EEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 899999999999999999999765432 222 35679999 799999999999997643
No 17
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=1e-26 Score=212.19 Aligned_cols=120 Identities=17% Similarity=0.408 Sum_probs=102.8
Q ss_pred cccccCCeEEeeecCCCCCCCc-EEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc-ccceEEccCcceEEcCC
Q 037348 121 DYDWTEEWYPLYLTKDVPDDAP-LGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGE 198 (579)
Q Consensus 121 ~~~~~~~W~~v~~~~dl~~~~~-~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v-~~g~l~CpyHGW~Fd~d 198 (579)
+.+|.+.|+.|+.++||++++. ..+++.|++|+|+|+.+|+++|++|+|||||++|++|.. +++.|+||||||+||.|
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~ 81 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA 81 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence 4578999999999999987554 567789999999999899999999999999999999875 44689999999999999
Q ss_pred CceeecCCCCCCC--CCC-ccCccceEEEEEecCeEEEEcCCCCC
Q 037348 199 GKCVKIPQLPADA--KIP-RSACVRTYEVKESQGVVWVWMSQKTP 240 (579)
Q Consensus 199 G~c~~iP~~~~~~--~~~-~~~~l~~ypv~~~~G~V~V~~~~~~~ 240 (579)
|+|+.+|+.+... .++ ....++.++|.++.|+|||+++++++
T Consensus 82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 9999999865421 222 24468899999999999999998754
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=1.5e-26 Score=208.09 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=101.8
Q ss_pred CeEEeeecCCCCCCC-cEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecC
Q 037348 127 EWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~-~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
.|++|++++||++++ ++++++.|++|+|+|+.+|+++||.|+|||||++|++|.++++.|+||||||+||.+|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 599999999998765 5689999999999999899999999999999999999999989999999999999999999999
Q ss_pred CCCCCCCCC-ccCccceEEEEEecCeEEEEcCCC
Q 037348 206 QLPADAKIP-RSACVRTYEVKESQGVVWVWMSQK 238 (579)
Q Consensus 206 ~~~~~~~~~-~~~~l~~ypv~~~~G~V~V~~~~~ 238 (579)
.......++ ....|..++|++++|+|||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 876555554 356799999999999999999864
No 19
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=1.2e-26 Score=212.07 Aligned_cols=114 Identities=16% Similarity=0.371 Sum_probs=98.2
Q ss_pred eEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc-ccceEEccCcceEEcCCCceeecC
Q 037348 128 WYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 128 W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v-~~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
|++|++++||++ +....+.+.+++|+|+|+.+|+++||.|+|||||++|++|.. +.+.|+||||||+||.+|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 999999999986 556788888999999999899999999999999999999875 456899999999999999999999
Q ss_pred CCCCCC-----------CC-CccCccceEEEEEecCeEEEEcCCCCCC
Q 037348 206 QLPADA-----------KI-PRSACVRTYEVKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 206 ~~~~~~-----------~~-~~~~~l~~ypv~~~~G~V~V~~~~~~~~ 241 (579)
...... .+ +...+|+.|+|++++|+|||++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~ 128 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVES 128 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCCC
Confidence 864321 12 2356799999999999999999987543
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=3.1e-26 Score=205.59 Aligned_cols=113 Identities=33% Similarity=0.610 Sum_probs=101.3
Q ss_pred eEEeeecCCCC-CCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc-ccceEEccCcceEEcCCCceeecC
Q 037348 128 WYPLYLTKDVP-DDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 128 W~~v~~~~dl~-~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v-~~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
||+|+.++||+ +++.+.+++.|++++|+|+.+|+++|+.|.|||+|++|+.|.+ +++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 8889999999999999998899999999999999999999998 789999999999999999999999
Q ss_pred CCCCCC-CCCccCccceEEEEEecCeEEEEcCCCCC
Q 037348 206 QLPADA-KIPRSACVRTYEVKESQGVVWVWMSQKTP 240 (579)
Q Consensus 206 ~~~~~~-~~~~~~~l~~ypv~~~~G~V~V~~~~~~~ 240 (579)
...... ..+...+|++|+|++++|+|||+++++.+
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~ 116 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence 754322 12345679999999999999999987543
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=1.9e-25 Score=202.59 Aligned_cols=115 Identities=20% Similarity=0.464 Sum_probs=97.3
Q ss_pred CCeEEeeecCCCCCCC-cEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcccc-ceEEccCcceEEcCCCceee
Q 037348 126 EEWYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVK 203 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~-~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~-g~l~CpyHGW~Fd~dG~c~~ 203 (579)
+.|+.|+.++||++++ ...+++.|++++|+|+.+|+++|++|+|||||++|++|.+.+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 4799999999998854 555668899999999889999999999999999999998764 68999999999999999999
Q ss_pred cCCCCCC--CCCC-ccCccceEEE-EEecCeEEEEcCCCCC
Q 037348 204 IPQLPAD--AKIP-RSACVRTYEV-KESQGVVWVWMSQKTP 240 (579)
Q Consensus 204 iP~~~~~--~~~~-~~~~l~~ypv-~~~~G~V~V~~~~~~~ 240 (579)
+|..... ..++ ...+|++|++ ++++|+|||+++++++
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 9976532 1233 3567999985 5589999999997654
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.92 E-value=4e-25 Score=200.48 Aligned_cols=115 Identities=19% Similarity=0.378 Sum_probs=97.5
Q ss_pred eEEeeecCCCCCCC-cEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccc-cceEEccCcceEEcCCCceeecC
Q 037348 128 WYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLI-DGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 128 W~~v~~~~dl~~~~-~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~-~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
|+.|+.++||++++ ...+.+.|++|+|+|+.+|+++|+.|+||||+++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 89999999999855 55567999999999988999999999999999999998765 35799999999999999999999
Q ss_pred CCCCC---C-CCCccCccceEEEEEecCeEEEEcCCCCCCC
Q 037348 206 QLPAD---A-KIPRSACVRTYEVKESQGVVWVWMSQKTPPN 242 (579)
Q Consensus 206 ~~~~~---~-~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~ 242 (579)
..... . ..+...+|++|+|++++|+|||++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~~ 121 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGPSF 121 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCCCC
Confidence 75431 1 1234567999999999999999999865543
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=3e-24 Score=186.53 Aligned_cols=96 Identities=33% Similarity=0.631 Sum_probs=89.7
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecCC
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 206 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~ 206 (579)
|++|+.++||+++++..+++.|++++|+|+ +|+++||+|+|||+|++|+.|.++++.|+||||||+||. +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999999999999999999999998 569999999999999999999988899999999999998 999998774
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEE
Q 037348 207 LPADAKIPRSACVRTYEVKESQGVVWV 233 (579)
Q Consensus 207 ~~~~~~~~~~~~l~~ypv~~~~G~V~V 233 (579)
...|++||+++++|.|||
T Consensus 80 ---------~~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 ---------TEPLKTYPVKVEDGDVYV 97 (98)
T ss_pred ---------CCCcceEeEEEECCEEEE
Confidence 245999999999999998
No 24
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=3.4e-24 Score=186.43 Aligned_cols=97 Identities=27% Similarity=0.564 Sum_probs=88.9
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecCC
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 206 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~ 206 (579)
|++|+.++||++++.+.+++.|++++|+|+.+|+++||+|.|||+|++|++|.++++.|+||||||+||. +|.|.. |
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p- 78 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-P- 78 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-C-
Confidence 8999999999999999999999999999998899999999999999999999999999999999999998 888752 3
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEE
Q 037348 207 LPADAKIPRSACVRTYEVKESQGVVWVW 234 (579)
Q Consensus 207 ~~~~~~~~~~~~l~~ypv~~~~G~V~V~ 234 (579)
...+|++|||++++|.|||.
T Consensus 79 --------~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 79 --------DEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred --------CCCccceEeEEEECCEEEEC
Confidence 22469999999999999983
No 25
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.90 E-value=2.1e-23 Score=184.73 Aligned_cols=102 Identities=28% Similarity=0.437 Sum_probs=91.3
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecCC
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 206 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~ 206 (579)
|++|+.++||++++.+.+++.|++++++|+.+|+++|++|+|||+|++|+.|.++++.|+||||||+||. +|.|.. |
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~- 78 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-P- 78 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-C-
Confidence 8999999999999999999999999999988999999999999999999999988889999999999998 666642 2
Q ss_pred CCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 207 LPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 207 ~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
...+|++|+|++++|.|||++++.+
T Consensus 79 --------~~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 79 --------RDCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred --------CCCccceEeEEEECCEEEEeCCCcC
Confidence 2356999999999999999997543
No 26
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.90 E-value=1.8e-23 Score=183.26 Aligned_cols=100 Identities=22% Similarity=0.423 Sum_probs=92.3
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecC
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIP 205 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP 205 (579)
.|+.|+.++||++++...+.+.|++++|+|+.+|+++|++|.|||++++|+.|.++++.|+||+|||+||. ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 49999999999999999999999999999987899999999999999999999999999999999999997 99999877
Q ss_pred CCCCCCCCCccCccceEEEEEecCeEEEEc
Q 037348 206 QLPADAKIPRSACVRTYEVKESQGVVWVWM 235 (579)
Q Consensus 206 ~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~ 235 (579)
.. ..|++|||++++|.|||.+
T Consensus 81 ~~---------~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VC---------VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred cc---------CCcceEeEEEECCEEEEeC
Confidence 42 3589999999999999863
No 27
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=2.2e-23 Score=183.23 Aligned_cols=97 Identities=25% Similarity=0.369 Sum_probs=87.7
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCc-ccCCccc----cceEEccCcceEEcC-CCce
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAK-LSEGQLI----DGRLECLYHGWQFEG-EGKC 201 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgap-Ls~G~v~----~g~l~CpyHGW~Fd~-dG~c 201 (579)
|++|+.++||++++.+.+++.|++|+|+|+++|+++|++|+|||++++ |++|.+. ++.|+||||||+||. +|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999999777999999999999997 8889864 248999999999996 9999
Q ss_pred eecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 037348 202 VKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 234 (579)
Q Consensus 202 ~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~ 234 (579)
+..|. .+|++|||++++|.|||.
T Consensus 81 ~~~p~----------~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDED----------VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCC----------ccEeeEeEEEECCEEEEC
Confidence 98663 359999999999999983
No 28
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.90 E-value=2.9e-23 Score=188.19 Aligned_cols=114 Identities=24% Similarity=0.466 Sum_probs=95.2
Q ss_pred eEEeeecCCCCCCC-cEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc-ccceEEccCcceEEcCCCceeecC
Q 037348 128 WYPLYLTKDVPDDA-PLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 128 W~~v~~~~dl~~~~-~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v-~~g~l~CpyHGW~Fd~dG~c~~iP 205 (579)
|+.|++++||++++ ...+.+.|++|+|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 89999999999855 5777899999999999899999999999999999999865 456999999999999999999999
Q ss_pred CCCCC---CCCCc--cCccceEE-EEEecCeEEEEcCCCCCC
Q 037348 206 QLPAD---AKIPR--SACVRTYE-VKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 206 ~~~~~---~~~~~--~~~l~~yp-v~~~~G~V~V~~~~~~~~ 241 (579)
..... ..+++ ..+|..++ ++++.|+|||++++++++
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~~ 122 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVAP 122 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCCC
Confidence 64321 12223 35788886 566799999999986543
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.89 E-value=3.3e-23 Score=182.59 Aligned_cols=99 Identities=29% Similarity=0.575 Sum_probs=89.7
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCC-CCcccCCccccce----EEccCcceEEcC-CCc
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHR-LAKLSEGQLIDGR----LECLYHGWQFEG-EGK 200 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHr-gapLs~G~v~~g~----l~CpyHGW~Fd~-dG~ 200 (579)
.|++|+.++||+++....+++.|++++|+|+.+|+++|++|+|||+ +++|++|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999999999999999999998788999999999999 8999999887555 999999999998 899
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEEc
Q 037348 201 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWM 235 (579)
Q Consensus 201 c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~ 235 (579)
|+..| ..+|++|||++++|.|||.+
T Consensus 81 ~~~~~----------~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDD----------SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCC----------CccEeeEeEEEECCEEEEeC
Confidence 98644 24699999999999999964
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.88 E-value=1.4e-22 Score=179.17 Aligned_cols=101 Identities=30% Similarity=0.464 Sum_probs=90.8
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcccc-ceEEccCcceEEcC-CCceeec
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID-GRLECLYHGWQFEG-EGKCVKI 204 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~-g~l~CpyHGW~Fd~-dG~c~~i 204 (579)
.|+.|+.++||++++...+.+. ++++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||||||+||. +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 4899999999999988888876 88999996 8999999999999999999999987 79999999999998 9999876
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 037348 205 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 238 (579)
Q Consensus 205 P~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~ 238 (579)
|. ..+|++|+|++++|.|||.+.+.
T Consensus 80 p~---------~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PA---------TDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC---------CCCcceEeEEEECCEEEEEccCC
Confidence 63 34699999999999999998653
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=1.9e-22 Score=174.47 Aligned_cols=93 Identities=31% Similarity=0.535 Sum_probs=86.3
Q ss_pred EeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecCCCC
Q 037348 130 PLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQLP 208 (579)
Q Consensus 130 ~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~~~ 208 (579)
.|+.++||+++++..+++.|++|+|+|. +|+++|++|+|||++++|+.|.++++.|+||||||+||. +|+|+..|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 3789999999999999999999999998 899999999999999999999999999999999999998 9999988853
Q ss_pred CCCCCCccCccceEEEEEecCeEE
Q 037348 209 ADAKIPRSACVRTYEVKESQGVVW 232 (579)
Q Consensus 209 ~~~~~~~~~~l~~ypv~~~~G~V~ 232 (579)
..|++||+++++|.||
T Consensus 80 --------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --------CCcceEEEEEECCEEC
Confidence 3489999999999997
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.85 E-value=3.4e-21 Score=169.62 Aligned_cols=98 Identities=34% Similarity=0.703 Sum_probs=90.9
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCC-CCCcccCCccccc----eEEccCcceEEcC-CCc
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPH-RLAKLSEGQLIDG----RLECLYHGWQFEG-EGK 200 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpH-rgapLs~G~v~~g----~l~CpyHGW~Fd~-dG~ 200 (579)
+|.+||.++||+++....+.+.|++|+|||..+|+++|++|.||| ++++|++|.+++. .|.||+|+|.||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999988999999999999 8999999998765 9999999999998 999
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 037348 201 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 234 (579)
Q Consensus 201 c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~ 234 (579)
|+..| ..++++|||++++|.|||.
T Consensus 81 ~~~~~----------~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDP----------DVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSEC----------SEBSBEEEEEECTTEEEEE
T ss_pred cCCCC----------CCcEEeEEEEEECCEEEEC
Confidence 98744 2569999999999999984
No 33
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.84 E-value=9.4e-21 Score=168.01 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=87.2
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEe-CCCeEEeecCCCCCCCCc-ccCCccc--cc--eEEccCcceEEcC-CC
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKD-GKGELRCHQDRCPHRLAK-LSEGQLI--DG--RLECLYHGWQFEG-EG 199 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~-~~G~~~a~~d~CpHrgap-Ls~G~v~--~g--~l~CpyHGW~Fd~-dG 199 (579)
.|..|+.++||++++...+.+.|++|+|||. .+|+++|++|.|||.+++ |++|.+. ++ .|+||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 589999999999999985 9999884 23 4999999999998 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEE
Q 037348 200 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVW 234 (579)
Q Consensus 200 ~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~ 234 (579)
+|+..| ..+|++|||++++|.|||.
T Consensus 83 ~~~~~~----------~~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDE----------QFSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCC----------CccEeeEeEEEECCEEEEe
Confidence 998643 2369999999999999985
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.84 E-value=1.1e-20 Score=163.63 Aligned_cols=93 Identities=31% Similarity=0.651 Sum_probs=78.5
Q ss_pred CeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc--cccceEEccCcceEEcCC-Ccee
Q 037348 127 EWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQFEGE-GKCV 202 (579)
Q Consensus 127 ~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~--v~~g~l~CpyHGW~Fd~d-G~c~ 202 (579)
+|++|+.++||++ +....+.+ |...++++..+|+++|++|.|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 6999999999998 55677778 65555556779999999999999999999995 446899999999999995 9999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecC
Q 037348 203 KIPQLPADAKIPRSACVRTYEVKESQG 229 (579)
Q Consensus 203 ~iP~~~~~~~~~~~~~l~~ypv~~~~G 229 (579)
.+|.. .+++.|||+++++
T Consensus 80 ~~p~~---------~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAP---------RPLPLYPVKVEGD 97 (97)
T ss_dssp ESTTC---------SBSTEEEEEEETT
T ss_pred cCCCC---------CCcCCCCeEEeCC
Confidence 99863 2589999999874
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.82 E-value=5.9e-20 Score=159.58 Aligned_cols=95 Identities=29% Similarity=0.460 Sum_probs=87.0
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecCC
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQ 206 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~ 206 (579)
|++++..++|+++....+.+.|..++|+|+.+|+++|++|.|||++++|..|.++++.|+||||||+||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999989999999999999999998899999999999999999999888899999999999999 999998774
Q ss_pred CCCCCCCCccCccceEEEEEec-CeE
Q 037348 207 LPADAKIPRSACVRTYEVKESQ-GVV 231 (579)
Q Consensus 207 ~~~~~~~~~~~~l~~ypv~~~~-G~V 231 (579)
...+++|++++.+ +.|
T Consensus 81 ---------~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ---------PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ---------CCCcCEEEEEEeCCceE
Confidence 3568999999994 444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.82 E-value=6.8e-20 Score=161.83 Aligned_cols=102 Identities=27% Similarity=0.510 Sum_probs=89.7
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccc-eEEccCcceEEcC-CCceee
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDG-RLECLYHGWQFEG-EGKCVK 203 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g-~l~CpyHGW~Fd~-dG~c~~ 203 (579)
..|+.+|.++||+++....+.+.+...++++..+|+++|++|+|||.+++|+.|.++++ .|+||.|+|.||. ||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 57999999999999988888884436666776799999999999999999999999876 6999999999998 999998
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 037348 204 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 236 (579)
Q Consensus 204 iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~ 236 (579)
.|+.. .|++|||++++|.|||.++
T Consensus 83 ~p~~~---------~l~~y~vrve~g~v~v~~~ 106 (106)
T COG2146 83 PPAGK---------TLKTYPVRVEGGRVFVDLD 106 (106)
T ss_pred CCCCC---------ceeEEeEEEECCEEEEecC
Confidence 88532 1999999999999999863
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.79 E-value=3e-19 Score=153.57 Aligned_cols=88 Identities=15% Similarity=0.278 Sum_probs=78.5
Q ss_pred eeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecCCCCCC
Q 037348 131 LYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 210 (579)
Q Consensus 131 v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~ 210 (579)
++.++||+++....+.+.|++|+|+|+.+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.||+|+..|.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa---- 76 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPA---- 76 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCC----
Confidence 578899999999999999999999999899999999999999999998875 569999999999999999998874
Q ss_pred CCCCccCccceEEEEEec
Q 037348 211 AKIPRSACVRTYEVKESQ 228 (579)
Q Consensus 211 ~~~~~~~~l~~ypv~~~~ 228 (579)
...++.|+|+-.+
T Consensus 77 -----~~~l~~y~v~~~~ 89 (91)
T cd03477 77 -----VSGLKPADDAPID 89 (91)
T ss_pred -----CCCCCeeEeeccc
Confidence 2458899987643
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.77 E-value=2.3e-18 Score=165.31 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=111.3
Q ss_pred EEEeccChHhHhhcCCCCCCCcccccccccccccccCCCceEEEeecccCCcc-cccCCCC---------CCCCceEEEE
Q 037348 263 IHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFA-GQWGREK---------DGSMPNFLRF 332 (579)
Q Consensus 263 ~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~~Gf~-~~~~~~~---------~~~~~~~~~F 332 (579)
.++++|||++++||+||++|++|+|+++++........+..+++.+. ..|+. ..+.... ..+....+.|
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEV-PRGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEe-CCEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 45789999999999999999999999987543222001234444432 23332 1111111 1223456789
Q ss_pred ecCeeeeeeceeecC---CCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCC-----ccccCchhHhhHhhhhHHHHHH
Q 037348 333 EAPCVLQNNRESVDN---KTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSP-----WIKLFPDWYFHQSASKVFEQDM 404 (579)
Q Consensus 333 ~~P~~~~~~~~~~~~---~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~-----~~k~~p~W~~h~~~~~VldeD~ 404 (579)
.+||++.......+. +.| ..+..++.++|+++++|++++.+..+.... ...+... .......|++||+
T Consensus 84 ~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~eD~ 159 (196)
T cd08878 84 LLPNVLLIDPGVAPAGTREQG--VRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTET--LRSGLSGAFNEDK 159 (196)
T ss_pred ECCEEEEEecccccCCcCCCc--ceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHH--HHHHhhhhchhHH
Confidence 999998766533210 011 134556778999999999988877665432 1111111 2336778999999
Q ss_pred HHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 405 GFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 405 ~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
.|+|+|++++... +.++.+ ..+|+++++||||+++.
T Consensus 160 ~i~e~q~~~~~~~--~~~~~l---~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 160 EAVEAQQRIIDRD--PTREHL---GLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHhcC--Cccccc---ccccHHHHHHHHHHHHh
Confidence 9999999998753 233332 33899999999999974
No 39
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.75 E-value=6.1e-18 Score=153.85 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=85.0
Q ss_pred EEeeecCCCCCCCcEEEEEcC--EEEEEEEeC---------CCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC
Q 037348 129 YPLYLTKDVPDDAPLGLTVFD--QQIVLYKDG---------KGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 197 (579)
Q Consensus 129 ~~v~~~~dl~~~~~~~~~l~g--~~lvl~R~~---------~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~ 197 (579)
+.|+.++||++++...+++.+ ++++|+|.. +|+++|++|+|||++++|++|. +++.|+||+|||+||.
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl 82 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDP 82 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeC
Confidence 468999999999999999887 899999974 6899999999999999999987 7789999999999998
Q ss_pred --CCceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEE
Q 037348 198 --EGKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVW 234 (579)
Q Consensus 198 --dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~--~G~V~V~ 234 (579)
+|+|+..|. ...|+.||++++ +|.|||.
T Consensus 83 ~tgG~~~~gPa---------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 83 ARGGQMVSGQA---------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCeEEcCCC---------CCCCCeEEEEEECCCCEEEEE
Confidence 479997663 346999999999 9999985
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.69 E-value=2e-16 Score=143.15 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=68.2
Q ss_pred EEEEcCEEEEEEEeCCCeE--EeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccce
Q 037348 144 GLTVFDQQIVLYKDGKGEL--RCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRT 221 (579)
Q Consensus 144 ~~~l~g~~lvl~R~~~G~~--~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ 221 (579)
.+...+..|+|++ .+|++ +|++|.|||+|++|+.|.. ++.|+||+|||+||.+|+++..|. ...|+.
T Consensus 29 ~~~~~~~~Ilv~~-~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa---------~~~L~~ 97 (126)
T cd03471 29 QGLKGDPTYLIVE-EDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA---------PLSLAL 97 (126)
T ss_pred EEecCCeEEEEEe-CCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC---------CCCCce
Confidence 3344556666666 48877 8999999999999998754 579999999999999999987763 346999
Q ss_pred EEEEEecCeEEEEcCC
Q 037348 222 YEVKESQGVVWVWMSQ 237 (579)
Q Consensus 222 ypv~~~~G~V~V~~~~ 237 (579)
|+|++++|.|||.+..
T Consensus 98 y~V~vedg~I~V~~~~ 113 (126)
T cd03471 98 VHATVDDDKVVLSPWT 113 (126)
T ss_pred EeEEEECCEEEEEECc
Confidence 9999999999998654
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.65 E-value=5.6e-16 Score=141.36 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=81.3
Q ss_pred EEeeecCCCCCCCcEEEEEcC--EEEEEEEe---------CCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC
Q 037348 129 YPLYLTKDVPDDAPLGLTVFD--QQIVLYKD---------GKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 197 (579)
Q Consensus 129 ~~v~~~~dl~~~~~~~~~l~g--~~lvl~R~---------~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~ 197 (579)
+.|+.++||+++++..+.+.+ .+++++|. .+|+++|++|.|||.+++|++|. +++.|+||+|||+||.
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl 85 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDP 85 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECC
Confidence 468999999999999999875 47888884 48999999999999999999875 6789999999999998
Q ss_pred C--CceeecCCCCCCCCCCccCccceEEEEEe-cCeEEE
Q 037348 198 E--GKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWV 233 (579)
Q Consensus 198 d--G~c~~iP~~~~~~~~~~~~~l~~ypv~~~-~G~V~V 233 (579)
+ |+|+..|. ..+|.+||++++ +|.||.
T Consensus 86 ~tgG~~~~gP~---------~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 86 EKGGQQVWGQA---------TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCCcEECCCC---------CCCCCeeEEEEECCCeEEE
Confidence 5 69987663 356999999997 599994
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.65 E-value=3.6e-16 Score=136.62 Aligned_cols=71 Identities=20% Similarity=0.410 Sum_probs=65.0
Q ss_pred cCCCCCCCcEEEEE-cCEEEEEEEeCCCeEEeecCCCCCCCCcccCC--ccccceEEccCcceEEcC-CCceeecC
Q 037348 134 TKDVPDDAPLGLTV-FDQQIVLYKDGKGELRCHQDRCPHRLAKLSEG--QLIDGRLECLYHGWQFEG-EGKCVKIP 205 (579)
Q Consensus 134 ~~dl~~~~~~~~~l-~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G--~v~~g~l~CpyHGW~Fd~-dG~c~~iP 205 (579)
+.||++|..+.+.+ .|++|+|+|. +|+++|++|+|||++++|+.| .++++.|+||+|||+||. +|+++.-|
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p 88 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPP 88 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCC
Confidence 47899998999999 9999999997 899999999999999999994 588889999999999998 99998755
No 43
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.63 E-value=6.5e-16 Score=133.15 Aligned_cols=86 Identities=33% Similarity=0.564 Sum_probs=72.7
Q ss_pred EecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhHhhhhHHHHHHHHHHHHH
Q 037348 332 FEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASKVFEQDMGFLSSQN 411 (579)
Q Consensus 332 F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~~~~~VldeD~~iLe~Qq 411 (579)
|++||++.++..... ..+...+++.+++|+|++||+||+++++++++..++.+++|+|+.|..+++|||||+.+||.||
T Consensus 1 F~pPc~v~~~~~~~~-~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P~wl~H~~~n~VLd~Dl~lLh~Qe 79 (92)
T PF08417_consen 1 FIPPCLVRSTEEGPK-KKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIPRWLSHLTSNKVLDQDLYLLHGQE 79 (92)
T ss_pred CCCCEEEEEeccccc-cCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCCHHHHHHhhCcccHHHHHHHHHHH
Confidence 789999988721111 2233355778999999999999999999999988889999999999999999999999999999
Q ss_pred HhhhhcC
Q 037348 412 EVLLKEK 418 (579)
Q Consensus 412 ~~l~~~~ 418 (579)
+++++.|
T Consensus 80 ~~l~~~g 86 (92)
T PF08417_consen 80 RRLAREG 86 (92)
T ss_pred HHHHHhc
Confidence 9998754
No 44
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.57 E-value=1.2e-14 Score=132.27 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=80.0
Q ss_pred ecCCCCCCCcEEEEEcCEEEEEEEeC----------------------------CCeEEeecCCCCCCCCcccCCccccc
Q 037348 133 LTKDVPDDAPLGLTVFDQQIVLYKDG----------------------------KGELRCHQDRCPHRLAKLSEGQLIDG 184 (579)
Q Consensus 133 ~~~dl~~~~~~~~~l~g~~lvl~R~~----------------------------~G~~~a~~d~CpHrgapLs~G~v~~g 184 (579)
.+++|++|+.+.+...|++|+|+|.. +|+++|+.+.|||.|+.+..+.++++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 56899999999999999999999952 67999999999999999988876778
Q ss_pred eEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEec-CeEEE
Q 037348 185 RLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQ-GVVWV 233 (579)
Q Consensus 185 ~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~-G~V~V 233 (579)
.+.||+|||+||.+|+.+..|. ...|+.||+++.+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa---------~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA---------PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC---------CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999987663 3469999999877 66664
No 45
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.57 E-value=3.5e-14 Score=135.30 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=104.1
Q ss_pred EEEEeccChHhHhhcCCCCCCCcccccccccccc---cccCCCceEEEeec---ccCCcccccCCC--------CCCCCc
Q 037348 262 TIHELPYDHSILLENLMDPAHIPISHDRTDYSAK---REDAQPLGFEVTER---TDRGFAGQWGRE--------KDGSMP 327 (579)
Q Consensus 262 ~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~---r~~~~p~~~~v~~~---~~~Gf~~~~~~~--------~~~~~~ 327 (579)
..++++||||+++||++|+||++++|+++..... ..... .+.+... ...+....|... ......
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGD--HYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGG 80 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCC--ceEEEeccCCCCChhhcccchhhhcccccccccccC
Confidence 3568999999999999999999999999864211 00111 1222210 011221112111 112234
Q ss_pred eEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhH--hhhhHHHHHHH
Q 037348 328 NFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQ--SASKVFEQDMG 405 (579)
Q Consensus 328 ~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~--~~~~VldeD~~ 405 (579)
....+++||++..... ....++.++|+++++|++.+++.........+....++... ....|++||+.
T Consensus 81 ~~~~~~fPn~~~~~~~----------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~ 150 (188)
T cd00680 81 YLYLYLFPNLMIGLYP----------DSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQVLDEDIE 150 (188)
T ss_pred eEEEEECCcEeeeecC----------CEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHHHHHHHH
Confidence 5678899999875321 12345667899999999988876554332112222333322 46789999999
Q ss_pred HHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 406 FLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 406 iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
+++.||+++.+..... .. +......+..|++|++++
T Consensus 151 ~~e~~Q~gl~s~~~~~--~~--l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 151 LCERIQRGLRSGAFRG--GP--LSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHhccccCCcCCC--CC--CCcccccHHHHHHHHHHh
Confidence 9999999997754321 11 223457899999999875
No 46
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.48 E-value=2.1e-13 Score=131.38 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCCCcEEEE-EcCEE-EEEEEeCCCeE--EeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecCCCCCCCCC
Q 037348 138 PDDAPLGLT-VFDQQ-IVLYKDGKGEL--RCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKI 213 (579)
Q Consensus 138 ~~~~~~~~~-l~g~~-lvl~R~~~G~~--~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~ 213 (579)
+++++..+. +.|.+ +++++ .+|++ +|+++.|||.|++|+++..+ +.++||+|||+||.+|+++..|.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa------- 143 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE-EDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPA------- 143 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe-CCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCC-------
Confidence 566666665 67777 55555 58988 67799999999999998754 59999999999999999887663
Q ss_pred CccCccceEEEEEecCeEEEEc
Q 037348 214 PRSACVRTYEVKESQGVVWVWM 235 (579)
Q Consensus 214 ~~~~~l~~ypv~~~~G~V~V~~ 235 (579)
...|+.|+|++++|.|+|.+
T Consensus 144 --~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 144 --PLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred --CCCCCeEeEEEECCEEEEEE
Confidence 34699999999999999977
No 47
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.40 E-value=5.9e-12 Score=122.02 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=97.9
Q ss_pred EEEEeccChHhHhhcCCCCCCCccccccccccccccc-------CCC-c-eEEEeecccCCcccccCC---CC-CCCCce
Q 037348 262 TIHELPYDHSILLENLMDPAHIPISHDRTDYSAKRED-------AQP-L-GFEVTERTDRGFAGQWGR---EK-DGSMPN 328 (579)
Q Consensus 262 ~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~-------~~p-~-~~~v~~~~~~Gf~~~~~~---~~-~~~~~~ 328 (579)
..++++||||+++||++|+||++++|+++.......+ ... . .+................ .. ......
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 3568999999999999999999999999753111100 000 0 000000000000000000 00 012234
Q ss_pred EEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhh--HhhhhHHHHHHHH
Q 037348 329 FLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFH--QSASKVFEQDMGF 406 (579)
Q Consensus 329 ~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h--~~~~~VldeD~~i 406 (579)
...+++||+++... + .+ ..++...|+++++|++.+.+..............|... .....|++||..+
T Consensus 84 ~~~~iFPN~~i~~~-----~----~~-~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~~ 153 (190)
T cd08885 84 VLFAIFPTHLLALT-----P----DY-VWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDAINDEDRLV 153 (190)
T ss_pred EEEEECCcEEEEec-----C----Ce-EEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999997532 1 11 23445679999999988776544322100111123221 2346799999999
Q ss_pred HHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 407 LSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 407 Le~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
++.+|+++.+.+.. ... +...+..+..|++|+.++
T Consensus 154 ~e~~Q~Gl~S~~~~-~g~---l~~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 154 VEGVQRGLGSRFAV-PGR---LSHLERPIWQFQRYLASR 188 (190)
T ss_pred HHHhcccccCCCCC-CCC---CCcccccHHHHHHHHHHH
Confidence 99999999875432 112 233588999999999874
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.32 E-value=1.6e-11 Score=117.90 Aligned_cols=165 Identities=10% Similarity=0.083 Sum_probs=97.4
Q ss_pred EEEeccChHhHhhcCCCCCCCcccccccccccccccCCCceEEEeeccc-CCcccccCCC---CCCCCceEEEEecCeee
Q 037348 263 IHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTD-RGFAGQWGRE---KDGSMPNFLRFEAPCVL 338 (579)
Q Consensus 263 ~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~-~Gf~~~~~~~---~~~~~~~~~~F~~P~~~ 338 (579)
..++++|||+++||++|+||++++|+++....... ...++..+... .++....... ..........+++||++
T Consensus 5 ~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 81 (175)
T cd08883 5 EYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDYA---TYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLM 81 (175)
T ss_pred EeeeecCceEEehhcCCcccCcccchhHHhhcccC---ceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEe
Confidence 46789999999999999999999999986332111 11111111000 0110000000 01123345677899999
Q ss_pred eeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhHhhhhHHHHHHHHHHHHHHhhhhcC
Q 037348 339 QNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEK 418 (579)
Q Consensus 339 ~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~ 418 (579)
+... + .++ .++.+.|+++++|++...++........+ ..|........|++||..+++.+|+++.+.+
T Consensus 82 i~~~-----~----~~~-~~~~~~P~~p~~t~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~ 149 (175)
T cd08883 82 LNRY-----P----PGM-DVNVVLPLGPERCKVVFDYFVDDSDGSDE--AFIAESIESDRVQKEDIEICESVQRGLESGA 149 (175)
T ss_pred eeec-----C----CeE-EEEEEEeCCCCcEEEEEEEEEeccccchh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 7632 1 112 34456799999999987765443211011 1121111156899999999999999998754
Q ss_pred CCCccccccccccCHHHHHHHHHHHHh
Q 037348 419 VPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 419 ~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
.. ...+. ...+..|..|++|++++
T Consensus 150 ~~-~G~l~--~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 150 YD-PGRFS--PKRENGVHHFHRLLAQA 173 (175)
T ss_pred CC-CCCCC--CccchHHHHHHHHHHHh
Confidence 31 11221 12478899999999875
No 49
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.31 E-value=2.2e-11 Score=117.78 Aligned_cols=167 Identities=10% Similarity=0.031 Sum_probs=97.4
Q ss_pred EEEEeccChHhHhhcCCCCCCCcccccccccccccccCCCceEEEeeccc-C----CcccccCCCCCCCCceEEEEecCe
Q 037348 262 TIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTD-R----GFAGQWGREKDGSMPNFLRFEAPC 336 (579)
Q Consensus 262 ~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~-~----Gf~~~~~~~~~~~~~~~~~F~~P~ 336 (579)
..++++||||+++||++|.||++++|+.+...... ....++..+... . ++.................+++||
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN 80 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDM---DTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPN 80 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhcccc---cccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCC
Confidence 45689999999999999999999999988633211 111111111000 0 011000000011123445678899
Q ss_pred eeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhHhhhhHH-HHHHHHHHHHHHhhh
Q 037348 337 VLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASKVF-EQDMGFLSSQNEVLL 415 (579)
Q Consensus 337 ~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~~~~~Vl-deD~~iLe~Qq~~l~ 415 (579)
++++... +. . .+.++.+.|+++++|++.+.++........+. + ....+...|+ +||..+++.+|+++.
T Consensus 81 ~~i~~~~-----~~--~-~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~--~-~~~~~~~~v~~~ED~~l~e~vQ~Gl~ 149 (182)
T cd08886 81 TMLNVYP-----GA--G-NMGVINIIPVDAETTLQHYDFYFRDEELTDEE--K-ELIEYYRQVLQPEDLELVESVQRGLK 149 (182)
T ss_pred EEEEeeC-----CC--C-eEEEEEEEeCCCCeEEEEEEEEecCCCccHHH--H-HHHHHHHHhcchhhHHHHHHHhcccc
Confidence 9976321 10 1 22455567999999998777653322111110 1 1223456787 999999999999998
Q ss_pred hcCCCCccccccc-----cccCHHHHHHHHHHHH
Q 037348 416 KEKVPTKELYFNL-----RSIDTWVAEYRKWMDK 444 (579)
Q Consensus 416 ~~~~~~k~~y~~~-----~~sD~~VvafRrWL~k 444 (579)
+.... ... +.+ ...+..+..|++|+++
T Consensus 150 S~~~~-~g~-l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 150 SRAFG-QGR-IVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred cCCCC-Cce-eccCcccCCccchhHHHHHHHHhc
Confidence 75432 122 211 1248889999999986
No 50
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.27 E-value=5.2e-11 Score=114.46 Aligned_cols=168 Identities=10% Similarity=0.112 Sum_probs=97.9
Q ss_pred EEEEeccChHhHhhcCCCCCCCcccccccccccccccCCCceEEEeeccc-CCc-----ccccCCC-C--C-CCCceEEE
Q 037348 262 TIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTD-RGF-----AGQWGRE-K--D-GSMPNFLR 331 (579)
Q Consensus 262 ~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~-~Gf-----~~~~~~~-~--~-~~~~~~~~ 331 (579)
...+++||||+++||++|+||++++|++++......+ ...++..+... .++ ....... . . ........
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~--~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDN--LSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIY 81 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCC--ceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEE
Confidence 3467999999999999999999999998863221111 11122111000 000 0000000 0 0 00112345
Q ss_pred EecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHh-hHhh-hhHHHHHHHHHHH
Q 037348 332 FEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYF-HQSA-SKVFEQDMGFLSS 409 (579)
Q Consensus 332 F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~-h~~~-~~VldeD~~iLe~ 409 (579)
+++||+++... + . ...++...|+++++|.+.+.++.............|.. .... ..|++||..+++.
T Consensus 82 ~lFPN~~i~~~-----~----~-~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ED~~~~e~ 151 (185)
T cd08887 82 TLFPNVSLLVQ-----P----D-HLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNWDFLMAVVLDEDFEVAEE 151 (185)
T ss_pred EECCceEEEec-----C----C-eEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67899987532 1 1 22345567999999998877665433221111112221 1223 5789999999999
Q ss_pred HHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 410 QNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 410 Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
+|+++.+.+.. ... +...+..+..|++|+++.
T Consensus 152 ~Q~Gl~s~~~~--~~~--l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 152 IQRGLASGAND--HLT--FGRNESALQHFHRWLERA 183 (185)
T ss_pred HhhhhhcCCCC--ceE--eecCCHHHHHHHHHHHHH
Confidence 99999865432 122 244689999999999874
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.26 E-value=2e-11 Score=117.19 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeC----------------------------------CCeEEeecCCCCCC
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG----------------------------------KGELRCHQDRCPHR 172 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~----------------------------------~G~~~a~~d~CpHr 172 (579)
.|..| .++||++++.+.+.+.|++|+|+|.. ++++.|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 46778 78999999999999999999999851 48999999999999
Q ss_pred CCcc-cCCccc-cceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEecCe
Q 037348 173 LAKL-SEGQLI-DGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGV 230 (579)
Q Consensus 173 gapL-s~G~v~-~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~ 230 (579)
||.+ ..+... .+.+.||+||++||.+|+.+..|. ...|+.||++..++.
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa---------~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA---------PLNLPVPPYKFLSDT 169 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC---------CCCCCCCCEEEcCCC
Confidence 9764 555544 578999999999999999987663 345889999986653
No 52
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.26 E-value=1.2e-10 Score=114.82 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=98.7
Q ss_pred EEEEeccChHhHhhcCCCCCCCccccccccc-ccccccCCCc-------eEEEe---------ecccCCccc--ccCCCC
Q 037348 262 TIHELPYDHSILLENLMDPAHIPISHDRTDY-SAKREDAQPL-------GFEVT---------ERTDRGFAG--QWGREK 322 (579)
Q Consensus 262 ~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~-~~~r~~~~p~-------~~~v~---------~~~~~Gf~~--~~~~~~ 322 (579)
..++++||||+++||++|+||++++|+++.. ....+..... .+... ..+..|... ......
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 3567999999999999999999999998752 1111110000 00000 000001000 000000
Q ss_pred C-CCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchh-HhhHhhhhHH
Q 037348 323 D-GSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDW-YFHQSASKVF 400 (579)
Q Consensus 323 ~-~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W-~~h~~~~~Vl 400 (579)
. ........+++||++++.. + . ...++.+.|+++++|++.+.++...... .+....| ........|+
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~~-----~----d-~~~~~~~~P~~p~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~ 162 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHLH-----P----D-HVVTFRVLPLSPDETLVRCKWLVHPDAV-EGVDYDLDDLVEVWDATN 162 (205)
T ss_pred ccccCceEEEEeCCcEEEEEc-----C----C-EEEEEEEEeCCCCceEEEEEEEECCchh-cccccCHHHHHHHHHHHH
Confidence 1 1223466778999987532 1 1 2345566899999999987766543221 1100111 1233567899
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 401 EQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 401 deD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
.||..+++.+|+++.+.... ...+ ...+..|..|.+|+.+.
T Consensus 163 ~ED~~i~e~vQ~Gl~S~~~~-~g~l---~~~E~~v~~F~~~~~~~ 203 (205)
T cd08884 163 RQDWAICERNQRGVNSPAYR-PGPY---SPMEGGVLAFDRWYLER 203 (205)
T ss_pred HHHHHHHHHhcccccCCCcC-CCCc---CCccHHHHHHHHHHHHH
Confidence 99999999999999875432 1222 23578999999999874
No 53
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.22 E-value=1.1e-11 Score=119.69 Aligned_cols=167 Identities=12% Similarity=0.091 Sum_probs=96.9
Q ss_pred EEeccChHhHhhcCCCCCCCcccccccccccccccCC---CceEEEeecccCCc------------ccccCC--------
Q 037348 264 HELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQ---PLGFEVTERTDRGF------------AGQWGR-------- 320 (579)
Q Consensus 264 ~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~---p~~~~v~~~~~~Gf------------~~~~~~-------- 320 (579)
.+++||||+++||++|+||++++|+++.......+.. ...++..+....+. ......
T Consensus 12 ~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (209)
T PF00848_consen 12 YEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPPG 91 (209)
T ss_dssp HHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence 3589999999999999999999999874322211111 01122111111000 000000
Q ss_pred -CCCCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCC-ccccCchhHhhHhhhh
Q 037348 321 -EKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSP-WIKLFPDWYFHQSASK 398 (579)
Q Consensus 321 -~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~-~~k~~p~W~~h~~~~~ 398 (579)
...........+++||+++... +++. .++...|++|++|++.+.+....... ..+. .+.+. .....
T Consensus 92 ~~~~~~~~~~~~~iFPn~~i~~~-----~~~~-----~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~ 159 (209)
T PF00848_consen 92 LPDDQRMGYRNYVIFPNLSIIVY-----PDHF-----TVRTIIPIGPDRTEVWSWWFVPKDEGAPPEF-REARI-RNWDR 159 (209)
T ss_dssp HHHHHHTSEEEEEETTTEEEEE------TTTT-----EEEEEEEESTTEEEEEEEEEEETT--STHHH-HHHHH-HHHHH
T ss_pred ccccccccccceeeCCCEEEEec-----cccc-----EEEEEEECCCCeEEEEEEEEEeCCcccchhh-HHHHH-HHHHh
Confidence 0011234568889999997632 1221 24455799999999987776554421 1111 11111 11122
Q ss_pred ---HHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 399 ---VFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 399 ---VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
|+.||+.+++.||+++...+.. +..+. ...|..|..|++|++++
T Consensus 160 ~~~~~~ED~~~~e~~Q~gl~s~~~~-~~~~~--~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 160 FFGVFAEDIEIVERQQRGLRSRGFD-PGRLS--GTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHSTHHHHHHHHHHHHHHTTSSTSC-TSEES--SCSSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHcCCCCC-CCCCC--CcCCHHHHHHHHHHHHH
Confidence 8999999999999999875542 22332 35799999999999875
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.87 E-value=4.8e-09 Score=99.63 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=52.8
Q ss_pred CCeEEeecCCCCCCCCccc---------------CCccccceEEccCcceEEcC-CCc-eeecCCCCCCCCCCccCccce
Q 037348 159 KGELRCHQDRCPHRLAKLS---------------EGQLIDGRLECLYHGWQFEG-EGK-CVKIPQLPADAKIPRSACVRT 221 (579)
Q Consensus 159 ~G~~~a~~d~CpHrgapLs---------------~G~v~~g~l~CpyHGW~Fd~-dG~-c~~iP~~~~~~~~~~~~~l~~ 221 (579)
+|+++|+++.|||+|++|. +|..+++.|.||+|||+||. +|. .+..| ....|+.
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GP---------A~~pLp~ 144 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGP---------APRPLPA 144 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCC---------CCCCcCE
Confidence 6899999999999999775 35556789999999999998 564 44333 2345899
Q ss_pred EEEEEec--CeEEEE
Q 037348 222 YEVKESQ--GVVWVW 234 (579)
Q Consensus 222 ypv~~~~--G~V~V~ 234 (579)
|++++++ |.||+-
T Consensus 145 ~~L~~d~~~d~iyAv 159 (171)
T cd03475 145 VILEYDSSTDDLYAV 159 (171)
T ss_pred eEEEEeCCCCcEEEE
Confidence 9999884 778764
No 55
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.59 E-value=3.5e-07 Score=91.44 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=78.0
Q ss_pred EEeccChHhHhhcCCCCCCCccccc--ccccccccccCCCceEEEeeccc-------C------C-------cccccC-C
Q 037348 264 HELPYDHSILLENLMDPAHIPISHD--RTDYSAKREDAQPLGFEVTERTD-------R------G-------FAGQWG-R 320 (579)
Q Consensus 264 ~~~~~~~~~lvEN~lD~~H~pfvH~--~~~~~~~r~~~~p~~~~v~~~~~-------~------G-------f~~~~~-~ 320 (579)
.++++|||+.+||+.|+||++++|. .+++....++.....++...... . + +...+. .
T Consensus 6 ~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (222)
T cd08880 6 QRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFTLL 85 (222)
T ss_pred eecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccccC
Confidence 4689999999999999999999999 55532111111001111111000 0 0 000000 0
Q ss_pred CC---------CCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhH
Q 037348 321 EK---------DGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWY 391 (579)
Q Consensus 321 ~~---------~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~ 391 (579)
.. ..........++||+++... . . ...+....|+++++|++.+.+....... .+....|.
T Consensus 86 d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~-----~----~-~l~v~~~~P~gpd~t~~~~~~~~~~~~~-~e~~~~~~ 154 (222)
T cd08880 86 DPSLLDGRAEFDDDITLVIQSIFPSLVVQQI-----Q----N-TLAVRHIIPKGPDSFELVWTYFGYEDDD-EEMTRLRL 154 (222)
T ss_pred CHHHHhhhHhhcCCCceEEEEECCCEEEecc-----C----C-cEEEEEEEecCCCeEEEEEEEEEecCCC-HHHHHHHH
Confidence 00 01122356678899987432 1 1 2234456799999999877655322111 11111222
Q ss_pred hhHh----hhhHHHHHHHHHHHHHHhhhhcC
Q 037348 392 FHQS----ASKVFEQDMGFLSSQNEVLLKEK 418 (579)
Q Consensus 392 ~h~~----~~~VldeD~~iLe~Qq~~l~~~~ 418 (579)
.+.. ...|..||..+++.+|+++....
T Consensus 155 ~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~ 185 (222)
T cd08880 155 RQANLVGPAGFVSMEDGEAIEFVQRGVEGDG 185 (222)
T ss_pred HHhcccCCcCCCccchHHHHHHhCchhcCCC
Confidence 2111 23588999999999999997644
No 56
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.50 E-value=3.3e-07 Score=90.32 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=96.5
Q ss_pred cccCCCceeeeEEEEeccChHhHhhcCCCCCCCcccccccccccccccCCCce--------E-EEee--cccCCccccc-
Q 037348 251 NFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLG--------F-EVTE--RTDRGFAGQW- 318 (579)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~--------~-~v~~--~~~~Gf~~~~- 318 (579)
.+-+++.......+.+.+||...+||.+|+.|+ |+|..+...-..+-+-|+. + ++.+ ....|+....
T Consensus 17 ~fld~~~~~~g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~ 95 (240)
T PF11723_consen 17 GFLDDDIVIFGMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLT 95 (240)
T ss_dssp TTTSTTEEEEEEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CH
T ss_pred cccCCcceEEeeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeeccc
Confidence 455566665556788999999999999999998 9999653211111001111 1 1111 1222321110
Q ss_pred -------C---CCC--------CCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCC
Q 037348 319 -------G---REK--------DGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGT 380 (579)
Q Consensus 319 -------~---~~~--------~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~ 380 (579)
. .+. .......+....|++....- +.. ..++..-..+||+..+.+++......-.
T Consensus 96 ~~~~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~-~P~------p~~~qyEwYVPID~~~h~Y~q~l~~~~~ 168 (240)
T PF11723_consen 96 EHYEPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVEN-WPY------PDFTQYEWYVPIDEDTHRYFQLLGKVCP 168 (240)
T ss_dssp HHEEEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES--SS------TTEEEEEEEEEEETTEEEEEEEEEEE-S
T ss_pred ccceEEEecccCCceeecCCCCCceeEEEeeEeccceeeccc-CCC------CCeeEEEEEEEecccceeeEeEEeeecC
Confidence 0 000 01112345556666654321 111 1233443447999988876543332111
Q ss_pred CC-c-----cccCchhHhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhCCC
Q 037348 381 SP-W-----IKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHG 448 (579)
Q Consensus 381 ~~-~-----~k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g~g 448 (579)
.. . .+..-.|. -...+.+.++|+.+.+++|+.+++...+.++. +-..|..|+++||...++..|
T Consensus 169 t~ee~~~f~~~f~~~~~-~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~---L~~~D~sIi~WRkLas~~nrg 238 (240)
T PF11723_consen 169 TEEERKAFEYEFEEQWK-PLALHGFNDDDIWAREAMQPFYADDTGWDREQ---LFEPDKSIIAWRKLASEHNRG 238 (240)
T ss_dssp SHHHHHHHHHHHHHTHH-HHTTTTTTHHHHHHHHHHHHHHHTSHHHHH-------GGGHHHHHHHHHHHHH-SE
T ss_pred CHHHHHHHHHHHHHHhH-HhhccCCCchhHHHHHHhhhhhhccCCCCHHH---hcCcchhHHHHHHHHHHhhcc
Confidence 10 0 01111222 23567788999999999999887744333332 334699999999999999876
No 57
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.48 E-value=7.1e-07 Score=90.46 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=62.3
Q ss_pred eEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeee--CCCCeEEEEEEEecCCCCCccccC-----chhHhh-Hh--hh
Q 037348 328 NFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRP--TGQGKSMLIVRFGTTGTSPWIKLF-----PDWYFH-QS--AS 397 (579)
Q Consensus 328 ~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~P--v~pg~trli~~f~~~~~~~~~k~~-----p~W~~h-~~--~~ 397 (579)
....+++||+++... +++ + .++...| .+|++|.+...+............ ..|... .. ..
T Consensus 127 ~~~~~lFPN~~i~~~-----p~~----~-~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (243)
T cd08882 127 GIHYTLFPNFTILPG-----PDG----L-LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELGGLG 196 (243)
T ss_pred cCeEEECCCccccCC-----CCc----c-EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCcccccccccccccccc
Confidence 356678899986531 111 1 3444568 599999986665432111000000 111111 11 36
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 398 KVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 398 ~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
.|++||+.+++.+|+++.+.+.. ...+. ..-+..|..|++|++++
T Consensus 197 ~V~~ED~~~~e~vQ~Gl~S~~~~--~~~l~-~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 197 LVLDQDFSNLPAVQKGMHSRGFG--GLVLA-NQEESRIRHFHEVLDDY 241 (243)
T ss_pred chhHhHHHHHHHHHHHhccCCCC--CcccC-chHHHHHHHHHHHHHHH
Confidence 89999999999999999875532 22221 11248899999999986
No 58
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.43 E-value=3.3e-07 Score=88.46 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=59.5
Q ss_pred cCEEEEEEEeCCC-----eEEeecCCCCCCCCcccC-CccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccce
Q 037348 148 FDQQIVLYKDGKG-----ELRCHQDRCPHRLAKLSE-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRT 221 (579)
Q Consensus 148 ~g~~lvl~R~~~G-----~~~a~~d~CpHrgapLs~-G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ 221 (579)
.+.+...+++.++ +|.|+...|.|.||.... +...++.+.||+||.+||.+|+.+..|. ...|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA---------~~~L~~ 152 (177)
T COG0723 82 AGPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA---------PRPLPI 152 (177)
T ss_pred ccccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC---------CCCcCC
Confidence 3445555555444 466999999999999998 6667899999999999999999887764 345888
Q ss_pred EEEEEecCeEEE
Q 037348 222 YEVKESQGVVWV 233 (579)
Q Consensus 222 ypv~~~~G~V~V 233 (579)
++++..++-+++
T Consensus 153 ~~~~~~~d~~~~ 164 (177)
T COG0723 153 PPLEYDSDKLYL 164 (177)
T ss_pred ceEEEeCCceEE
Confidence 888877774444
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.10 E-value=1.1e-05 Score=79.80 Aligned_cols=136 Identities=13% Similarity=-0.029 Sum_probs=72.9
Q ss_pred EEEeccChHhHhhcCC-CCCCCcccccccccccccccCCCceEEEeecccCCcccccC-CCCC---CCCceEEEEecCee
Q 037348 263 IHELPYDHSILLENLM-DPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWG-REKD---GSMPNFLRFEAPCV 337 (579)
Q Consensus 263 ~~~~~~~~~~lvEN~l-D~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~~~~Gf~~~~~-~~~~---~~~~~~~~F~~P~~ 337 (579)
...++||||+++||++ |.||++++|..+...+...... .. .....|...... .+.. ........+++||+
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~~--~~---~~~~~g~~~~~~~~GHg~~~~~~~~~~~~iFPN~ 84 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDAA--DL---PPIDLGLQFTAPWHGHGLGFFLDSPQHGTIFPNL 84 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHHHhhCCcccc--cC---CCCCCCcEEEeCCCCeEEEEeccCcceeeECCcc
Confidence 4578999999999999 9999999999875332221100 00 000111110000 0000 00022345677988
Q ss_pred eeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhHhhh------hHHHHHHHHHHHHH
Q 037348 338 LQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSAS------KVFEQDMGFLSSQN 411 (579)
Q Consensus 338 ~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~~~~------~VldeD~~iLe~Qq 411 (579)
...... ...+....|+++++|.+...+......+. ...-++. ....+ .+-.||.++++.+|
T Consensus 85 ~~~~~~-----------~~~~r~~~P~gp~~tev~~~~~~~kda~e-~~~~~~~-~~~~~~~gpaG~~~~DD~e~~e~~Q 151 (206)
T cd08881 85 SFLPGY-----------FNTLRVWHPRGPDETEVWTWTLVDKDAPE-EVKDRVR-RQYTRTFGPAGTFEQDDGENWEEIT 151 (206)
T ss_pred hhhhcc-----------CceEEEEEeCCCCeEEEEEEEEecCCCCH-HHHHHHH-HHHHhccCCcCCCcCchHHHHHHHH
Confidence 764320 12333447999999997666655443221 1101111 10111 13359999999999
Q ss_pred Hhhhh
Q 037348 412 EVLLK 416 (579)
Q Consensus 412 ~~l~~ 416 (579)
+++..
T Consensus 152 ~g~~~ 156 (206)
T cd08881 152 RVARG 156 (206)
T ss_pred Hhhcc
Confidence 98863
No 60
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.04 E-value=6.5e-06 Score=78.92 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred ecCCCCCCCcEEEEEcCEEEEEE--------------------------EeCCCeEEeecCCCCCCCCcccCCccccceE
Q 037348 133 LTKDVPDDAPLGLTVFDQQIVLY--------------------------KDGKGELRCHQDRCPHRLAKLSEGQLIDGRL 186 (579)
Q Consensus 133 ~~~dl~~~~~~~~~l~g~~lvl~--------------------------R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l 186 (579)
...||++|+-.+|.-.|+++++- |.++-+|.++-.+|.|.||-.....++-|..
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 34667777767777777777763 4445578999999999999888777787899
Q ss_pred EccCcceEEcCCCceeecCC
Q 037348 187 ECLYHGWQFEGEGKCVKIPQ 206 (579)
Q Consensus 187 ~CpyHGW~Fd~dG~c~~iP~ 206 (579)
-||+||..||..|+..+.|.
T Consensus 171 ~CPCHGSHYdasGRIrkGPA 190 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPA 190 (210)
T ss_pred ecccccccccccCceecCCC
Confidence 99999999999999999884
No 61
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.02 E-value=8.4e-06 Score=82.31 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=25.9
Q ss_pred EEeccChHhHhhcCCCCCCCcccccccc
Q 037348 264 HELPYDHSILLENLMDPAHIPISHDRTD 291 (579)
Q Consensus 264 ~~~~~~~~~lvEN~lD~~H~pfvH~~~~ 291 (579)
+.++||||+.+||+.|.||++++|..+.
T Consensus 6 ~~~~~nWK~~~en~~d~yH~~~~H~~~~ 33 (237)
T cd08879 6 YRYRGNWKLQLENGTDGYHPPFVHASYV 33 (237)
T ss_pred EEeeceEEEEeeecCccccCccccHHHH
Confidence 4689999999999999999999999875
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.79 E-value=3.9e-05 Score=79.26 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCeEEeecCCCCCCCCcccCC------c----------------------cc---cceEEccCcceEEcCC--CceeecC
Q 037348 159 KGELRCHQDRCPHRLAKLSEG------Q----------------------LI---DGRLECLYHGWQFEGE--GKCVKIP 205 (579)
Q Consensus 159 ~G~~~a~~d~CpHrgapLs~G------~----------------------v~---~g~l~CpyHGW~Fd~d--G~c~~iP 205 (579)
++.+.||...|+|.||+++.- . -. .+.+.||+||.+||.+ |+.+..|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 467999999999999998331 0 01 1489999999999983 5788777
Q ss_pred CCCCCCCCCccCccceEEEEEe--cCeEEEEc
Q 037348 206 QLPADAKIPRSACVRTYEVKES--QGVVWVWM 235 (579)
Q Consensus 206 ~~~~~~~~~~~~~l~~ypv~~~--~G~V~V~~ 235 (579)
.. ..|+.++++++ +|.+++--
T Consensus 255 A~---------rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 255 TV---------RPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred CC---------CCCCcceEEEeCCCCeEEEEe
Confidence 42 34777887775 56777643
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.57 E-value=0.0015 Score=71.14 Aligned_cols=40 Identities=35% Similarity=0.537 Sum_probs=36.3
Q ss_pred CCCCcccCCccccceEEccCcceEEcC-CCceeecCCCCCC
Q 037348 171 HRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIPQLPAD 210 (579)
Q Consensus 171 HrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP~~~~~ 210 (579)
|+|+||..|-...|+++|||||.+|+. +|...+.|..+..
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~sl 41 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLDSL 41 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCccce
Confidence 999999999778999999999999998 8999999987643
No 64
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=74.08 E-value=19 Score=31.50 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=21.4
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037348 499 RYFRHVIHCKGCRSAVKAFNTWKNSLSTAAALLT 532 (579)
Q Consensus 499 Ry~~HT~~C~sC~~Alk~~~~l~~~l~~~~va~~ 532 (579)
+|+..-+...+|++-++.++.+..++.++++++.
T Consensus 3 ~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~ 36 (112)
T PF14015_consen 3 QIDWYDKKARRAQRRYRRLRIASIILSVLGAVIP 36 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566777777788877777666554443
No 65
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=60.59 E-value=4.5 Score=28.13 Aligned_cols=19 Identities=32% Similarity=0.693 Sum_probs=15.1
Q ss_pred hhhhhhhhhhcccchhhHH
Q 037348 494 PNLANRYFRHVIHCKGCRS 512 (579)
Q Consensus 494 ~qllDRy~~HT~~C~sC~~ 512 (579)
+.--.|...|..+|++|+.
T Consensus 18 ~~~~~~~~~HL~~C~~C~~ 36 (36)
T PF13490_consen 18 PEERARLEAHLASCPSCRE 36 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHcCHHhcC
Confidence 3557899999999999984
No 66
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=60.50 E-value=9.4 Score=32.25 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=25.9
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q 037348 494 PNLANRYFRHVIHCKGCRSAVKAFNTWKNSLS 525 (579)
Q Consensus 494 ~qllDRy~~HT~~C~sC~~Alk~~~~l~~~l~ 525 (579)
+.--.+++.|...|+.|+..+...++++.++.
T Consensus 26 ~~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L~ 57 (84)
T TIGR02949 26 PSDREQLRRHLEACPECLEEYGLEQAVKKLLK 57 (84)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999987776665553
No 67
>PRK10853 putative reductase; Provisional
Probab=58.12 E-value=6.6 Score=35.39 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=15.4
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 6 GIKNCDTIKKARRWLEA 22 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 68
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=58.09 E-value=5.3 Score=35.62 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=24.3
Q ss_pred CeEEeecCCCCCCCCcccCCccc--cceEEccCcceEEcC
Q 037348 160 GELRCHQDRCPHRLAKLSEGQLI--DGRLECLYHGWQFEG 197 (579)
Q Consensus 160 G~~~a~~d~CpHrgapLs~G~v~--~g~l~CpyHGW~Fd~ 197 (579)
|+.--..-.| .|||-.|.+. .+.+.||+||=--+-
T Consensus 63 g~~e~v~~~C---rAPL~~G~LC~RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 63 GEFEPVPHAC---RAPLPNGGLCPRRDRKKCPFHGKIIPR 99 (110)
T ss_pred CccCcCchhh---cCCCCCCCcCCccCcccCCCCCcccCC
Confidence 5454445456 4788888874 468899999976554
No 69
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=55.37 E-value=7.5 Score=34.49 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.4
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|++|++|++.++.
T Consensus 5 ~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 5 HNPRCSKSRNALALLEE 21 (112)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999986
No 70
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=54.56 E-value=7.9 Score=34.59 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=15.2
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|++|++|++.++.
T Consensus 6 ~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 6 EKPGCANNARQKALLEA 22 (113)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999886
No 71
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=54.30 E-value=7.9 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=13.7
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|.+|++|++.++.
T Consensus 2 ~~~~C~t~rka~~~L~~ 18 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEE 18 (110)
T ss_dssp E-TT-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 56799999999999987
No 72
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=51.89 E-value=9.4 Score=34.44 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.7
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|.+|++|++.++.
T Consensus 7 ~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 7 GNPNCSTCRKALAWLEE 23 (117)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 67899999999999987
No 73
>PRK10026 arsenate reductase; Provisional
Probab=51.45 E-value=9.4 Score=35.64 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=15.2
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|-.+|++|++|++.++.
T Consensus 8 ~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 8 HNPACGTSRNTLEMIRN 24 (141)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 66799999999999985
No 74
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=50.08 E-value=9.9 Score=34.96 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.7
Q ss_pred eecCCCCCCCCcccCCccccceEEccCcceEEcC
Q 037348 164 CHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 197 (579)
Q Consensus 164 a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~ 197 (579)
-+...||--|+||.+ .+|.+.||-||.++..
T Consensus 26 ML~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 26 MLAKHCPKCGTPLFR---KDGEVFCPVCGYREVV 56 (131)
T ss_pred HHHhhCcccCCccee---eCCeEECCCCCceEEE
Confidence 456789999999998 6799999999987763
No 75
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=49.81 E-value=11 Score=33.24 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=15.2
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~crka~~~L~~ 21 (105)
T cd03035 5 GIKNCDTVKKARKWLEA 21 (105)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 66799999999999986
No 76
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=47.76 E-value=12 Score=33.39 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=15.1
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|-.+|++|++|++.++.
T Consensus 5 ~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 5 HNPRCSKSRNTLALLED 21 (114)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999986
No 77
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=43.46 E-value=15 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=15.6
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 6 TISSCTSCKKAKTWLNA 22 (132)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 77899999999999986
No 78
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=41.93 E-value=1.6e+02 Score=25.52 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=27.1
Q ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037348 495 NLANRYFRHVIHCKGCRSAVKAFNTWKNSLSTAAALLTALAIL 537 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~Alk~~~~l~~~l~~~~va~~~~a~~ 537 (579)
+.++.|.+.-.+|+.+-..++.+..+-.++.++..+++++.++
T Consensus 2 ~~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~~l~~~~~~ 44 (112)
T PF14015_consen 2 EQIDWYDKKARRAQRRYRRLRIASIILSVLGAVIPVLASLSGL 44 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466677777777777777777777666665555554444444
No 79
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=41.23 E-value=17 Score=33.18 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=15.0
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|-.+|++|++|++.++.
T Consensus 7 ~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 7 EKPGCANNARQKAALKA 23 (126)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 55799999999999985
No 80
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=39.98 E-value=18 Score=31.91 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=15.3
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|++|++|.+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 5 EYPKCSTCRKAKKWLDE 21 (111)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56789999999999987
No 81
>PRK12559 transcriptional regulator Spx; Provisional
Probab=35.70 E-value=23 Score=32.42 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.1
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 6 TTASCASCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 56799999999999886
No 82
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=33.32 E-value=27 Score=30.95 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=15.3
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (115)
T cd03032 6 TSPSCSSCRKAKQWLEE 22 (115)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56899999999999986
No 83
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=31.31 E-value=31 Score=29.86 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.8
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 5 GNPNCSTSRKALAWLEE 21 (105)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 45689999999999987
No 84
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=30.90 E-value=31 Score=31.51 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=15.3
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEE 22 (131)
T ss_pred eCCCChHHHHHHHHHHH
Confidence 57899999999999986
No 85
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=30.80 E-value=32 Score=30.57 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=15.3
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|++|++|++.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEA 21 (117)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999987
No 86
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=29.71 E-value=25 Score=30.28 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=39.6
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCccc
Q 037348 123 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLS 177 (579)
Q Consensus 123 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs 177 (579)
++...||.+.. ++|+-..++.+|+++...+.....-.+|...-|++|..++
T Consensus 4 dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 4 DLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp -TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 46789998865 4788899999999999998876677889999999988765
No 87
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.51 E-value=89 Score=26.11 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhc
Q 037348 401 EQDMGFLSSQNEVLLKE 417 (579)
Q Consensus 401 deD~~iLe~Qq~~l~~~ 417 (579)
++|+..|+.-|+.+..+
T Consensus 5 e~E~r~L~eiEr~L~~~ 21 (82)
T PF11239_consen 5 EHEQRRLEEIERQLRAD 21 (82)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56777888888877543
No 88
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=26.43 E-value=3.9e+02 Score=23.59 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCCCCCcEEEE--EcCE--EEEEEEeCCCeEEeecCCCCCCCCcccCCcc-ccceEEccCcceEEcC------CCceeec
Q 037348 136 DVPDDAPLGLT--VFDQ--QIVLYKDGKGELRCHQDRCPHRLAKLSEGQL-IDGRLECLYHGWQFEG------EGKCVKI 204 (579)
Q Consensus 136 dl~~~~~~~~~--l~g~--~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v-~~g~l~CpyHGW~Fd~------dG~c~~i 204 (579)
||.+++.+.+. -.|+ ++++++..+|.+++.-|.|-==+ ..|-. +++.|+|-.-|-+|.. .|-|--+
T Consensus 1 ~v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~ 77 (102)
T PF10080_consen 1 DVKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPI 77 (102)
T ss_pred CccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEehhhcccccCCCCcc
Confidence 35555544444 3454 57788888999999999875431 12333 5789999999999985 2334333
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEc
Q 037348 205 PQLPADAKIPRSACVRTYEVKESQGVVWVWM 235 (579)
Q Consensus 205 P~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~ 235 (579)
| + +-++.+|.|-|..
T Consensus 78 P-------------~---~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 78 P-------------L---PYTVDGGNIIIDQ 92 (102)
T ss_pred C-------------C---ceEecCCeEEEeH
Confidence 3 1 4566788887764
No 89
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=25.65 E-value=2e+02 Score=28.72 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.5
Q ss_pred hhhhhhhhhcccchhhHHH
Q 037348 495 NLANRYFRHVIHCKGCRSA 513 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~A 513 (579)
=|++-|+.--..|++|++.
T Consensus 180 FLfnt~tnaLArCPHCrKv 198 (275)
T KOG4684|consen 180 FLFNTLTNALARCPHCRKV 198 (275)
T ss_pred eehhhHHHHHhcCCcccch
Confidence 4889999988999999875
No 90
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=25.30 E-value=1.6e+02 Score=31.59 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 037348 512 SAVKAFNTWKNSL 524 (579)
Q Consensus 512 ~Alk~~~~l~~~l 524 (579)
+=+|.++.++++.
T Consensus 171 kklk~~r~~~kvs 183 (336)
T PF05055_consen 171 KKLKLVRTWRKVS 183 (336)
T ss_pred HHHHHHHHHHHHh
Confidence 3344455555553
No 91
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=24.72 E-value=17 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.758 Sum_probs=16.2
Q ss_pred hhhhhhhhhcccchhhHHHH
Q 037348 495 NLANRYFRHVIHCKGCRSAV 514 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~Al 514 (579)
.+--+-+||++.|.||..|-
T Consensus 91 ~~egk~~QHVVKC~~CnEAT 110 (275)
T KOG4684|consen 91 SLEGKNQQHVVKCHSCNEAT 110 (275)
T ss_pred ccccccceeeEeecccCccc
Confidence 34567899999999998873
No 92
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.66 E-value=17 Score=36.98 Aligned_cols=19 Identities=26% Similarity=0.791 Sum_probs=0.0
Q ss_pred hhhhhhhhhcccchhhHHH
Q 037348 495 NLANRYFRHVIHCKGCRSA 513 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~A 513 (579)
++-++.+||++.|..|+.|
T Consensus 76 ~i~gk~~QhVVkC~~CnEA 94 (256)
T PF09788_consen 76 DIEGKMHQHVVKCSVCNEA 94 (256)
T ss_pred cccCccceeeEECCCCCcc
No 93
>PF12266 DUF3613: Protein of unknown function (DUF3613); InterPro: IPR022053 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.
Probab=23.32 E-value=1.5e+02 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhCCCCCCcCC
Q 037348 399 VFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHGMPYYFG 454 (579)
Q Consensus 399 VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g~g~P~~~g 454 (579)
+-++=..+|..|..+... +. ...+...+..-..|.|||+.|..-+|.|++
T Consensus 14 ~g~~T~~~L~lQrsg~~A-s~-----~~qp~~g~~a~layqRYL~SF~~~IPe~f~ 63 (67)
T PF12266_consen 14 VGDATRAWLALQRSGRAA-SP-----PPQPMTGEEATLAYQRYLDSFKHPIPEFFE 63 (67)
T ss_pred ccHHHHHHHHHHHhcccc-cC-----CCCCCchHHHHHHHHHHHHHccCCCchHhh
Confidence 344455677778765432 10 111334688889999999999999998875
No 94
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=22.40 E-value=1.1e+02 Score=27.22 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=36.0
Q ss_pred CeEEeeecCCCCCCCcEEEEE---cCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccc--cceEEccCcce
Q 037348 127 EWYPLYLTKDVPDDAPLGLTV---FDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLI--DGRLECLYHGW 193 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l---~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~--~g~l~CpyHGW 193 (579)
..+.--.+++. .+...+++ .|...+.+. +|+++..+.-||+.-| ...|.+. +..+.|-=|+-
T Consensus 36 ~~~~~i~L~~~--~~~~~i~i~~~~g~~~i~i~--~g~vrv~~s~CpdkiC-v~~G~I~~~G~~IVCLPn~l 102 (113)
T PF07009_consen 36 KEVKRIPLDKV--NEDKTIEIDGDGGYNTIEIK--DGKVRVIESDCPDKIC-VKTGWISRPGQSIVCLPNRL 102 (113)
T ss_dssp EEEEEEETTS---BSEEEEEEETTTCEEEEEEE--TTEEEEEEESTSS-HH-HHS-SB-STT-EEEETTTTE
T ss_pred EEEEEEECCCC--CCCEEEEEecCCcEEEEEEE--CCEEEEEECCCCCcch-hhCCCcCCCCCEEEEcCCEE
Confidence 34433344443 23566776 345555554 6999999999999876 3456663 45777765544
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.26 E-value=41 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=19.8
Q ss_pred ccceEEc-----cCcceEEcCCCceeecC
Q 037348 182 IDGRLEC-----LYHGWQFEGEGKCVKIP 205 (579)
Q Consensus 182 ~~g~l~C-----pyHGW~Fd~dG~c~~iP 205 (579)
+++.++| |||.|.|+..|.|...+
T Consensus 18 ~dDiVvCp~CgapyHR~C~~~~g~C~~~~ 46 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRDCWEKAGGCINYS 46 (54)
T ss_pred CCCEEECCCCCCcccHHHHhhCCceEecc
Confidence 3567888 59999999999998755
No 96
>PRK00420 hypothetical protein; Validated
Probab=21.58 E-value=66 Score=28.88 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=26.6
Q ss_pred eecCCCCCCCCcccCCccccceEEccCcceEEcC
Q 037348 164 CHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG 197 (579)
Q Consensus 164 a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~ 197 (579)
.+...||--|.||..- .+|...||-||-.+..
T Consensus 21 ml~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 21 MLSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred HccCCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 3678999999999864 5689999999997775
No 97
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=21.27 E-value=64 Score=25.66 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=14.4
Q ss_pred cccchhhHHHHHHHHHH
Q 037348 504 VIHCKGCRSAVKAFNTW 520 (579)
Q Consensus 504 T~~C~sC~~Alk~~~~l 520 (579)
...|+.|++|.+.++..
T Consensus 8 ~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 8 RLGCEDCTAVRLFLREK 24 (73)
T ss_pred cCCChhHHHHHHHHHHC
Confidence 46799999999998863
No 98
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.09 E-value=5.8e+02 Score=23.20 Aligned_cols=34 Identities=21% Similarity=0.037 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhc
Q 037348 543 WRAFCLVSASLCLAGVYACSTAISMNTTNFIRTH 576 (579)
Q Consensus 543 ~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~ 576 (579)
+.+++-++|++++.++..+.-..-.+..+.+|.|
T Consensus 96 ~~~~lF~~am~~l~~sl~~fl~Ev~ls~~al~~e 129 (130)
T PF11026_consen 96 LVAILFVLAMLLLIASLVLFLREVRLSTRALRIE 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777888888888777766666666666543
Done!