Query 037348
Match_columns 579
No_of_seqs 439 out of 2388
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 7E-52 2.4E-56 437.1 22.7 313 123-446 4-335 (349)
2 2zyl_A Possible oxidoreductase 100.0 1.3E-44 4.3E-49 386.6 26.7 310 121-446 19-337 (386)
3 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1E-44 3.6E-49 394.1 26.4 331 103-448 19-407 (446)
4 3n0q_A Putative aromatic-ring 100.0 1.4E-44 4.6E-49 388.1 24.5 329 102-445 16-396 (409)
5 3vca_A Ring-hydroxylating diox 100.0 5.1E-44 1.7E-48 384.0 25.3 329 102-445 18-399 (412)
6 2de6_A Terminal oxygenase comp 100.0 1.3E-43 4.3E-48 379.7 23.8 316 117-448 18-375 (392)
7 3gkq_A Terminal oxygenase comp 100.0 1.8E-41 6.2E-46 357.6 24.4 315 118-448 22-376 (389)
8 3gcf_A Terminal oxygenase comp 100.0 3.1E-41 1.1E-45 356.7 25.3 314 117-448 24-379 (394)
9 2b1x_A Naphthalene dioxygenase 100.0 1.2E-36 3.9E-41 332.9 25.5 190 102-291 20-225 (470)
10 2gbw_A Biphenyl 2,3-dioxygenas 100.0 3.3E-37 1.1E-41 335.9 19.3 189 103-291 13-216 (454)
11 2bmo_A Oxygenase-alpha NBDO; n 100.0 2.6E-37 8.8E-42 336.1 13.0 189 103-291 11-215 (447)
12 3gzx_A Biphenyl dioxygenase su 100.0 2.9E-36 9.8E-41 327.4 12.1 190 102-291 32-243 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 1.3E-35 4.4E-40 323.8 12.9 188 103-290 31-233 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 3E-26 1E-30 199.8 13.1 101 126-236 2-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 2.8E-26 9.6E-31 202.8 11.9 105 127-241 1-107 (111)
16 2i7f_A Ferredoxin component of 99.9 1.8E-26 6.2E-31 203.0 10.0 102 127-238 3-106 (108)
17 1fqt_A Rieske-type ferredoxin 99.9 5.2E-26 1.8E-30 201.5 12.8 104 126-239 4-109 (112)
18 2de6_D Ferredoxin component of 99.9 3.7E-26 1.3E-30 203.5 11.6 104 126-239 3-108 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 3.5E-26 1.2E-30 200.5 9.9 102 127-238 1-103 (106)
20 2jza_A Nitrite reductase [NAD( 99.9 1.4E-25 4.8E-30 204.1 12.4 111 126-246 2-119 (130)
21 3c0d_A Putative nitrite reduct 99.9 1.1E-25 3.7E-30 201.7 11.0 104 126-239 4-113 (119)
22 3gce_A Ferredoxin component of 99.9 2.1E-25 7E-30 200.5 12.2 104 126-239 9-115 (121)
23 2jo6_A Nitrite reductase [NAD( 99.9 2.2E-25 7.6E-30 197.6 12.1 101 126-236 5-112 (113)
24 3d89_A Rieske domain-containin 99.9 5.8E-26 2E-30 213.1 7.7 115 124-239 13-137 (157)
25 4aiv_A Probable nitrite reduct 99.9 1.3E-25 4.6E-30 201.1 9.3 102 126-237 8-117 (119)
26 4aay_B AROB; oxidoreductase, r 99.8 1.6E-21 5.5E-26 185.6 9.6 141 73-234 7-161 (175)
27 1rfs_A Rieske protein; iron-su 99.8 5E-21 1.7E-25 175.9 9.1 101 126-236 20-124 (139)
28 1rie_A Rieske iron-sulfur prot 99.8 1.7E-20 5.8E-25 170.3 11.1 97 127-233 5-128 (129)
29 1g8k_B Arsenite oxidase; molyb 99.8 8.2E-20 2.8E-24 166.7 10.9 98 127-234 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.6 2E-20 6.8E-25 170.3 0.0 101 127-237 15-120 (133)
31 1pp9_E Ubiquinol-cytochrome C 99.7 2.7E-17 9.1E-22 159.3 10.2 94 131-233 75-195 (196)
32 2qjy_C Ubiquinol-cytochrome C 99.7 4.5E-17 1.5E-21 156.8 11.2 96 128-233 49-186 (187)
33 1nyk_A Rieske iron-sulfur prot 99.7 2.2E-17 7.4E-22 155.8 8.8 71 159-239 78-150 (165)
34 3cx5_E Cytochrome B-C1 complex 99.7 6.6E-17 2.2E-21 155.3 11.7 97 126-233 61-184 (185)
35 2nwf_A Ubiquinol-cytochrome C 99.7 5.4E-17 1.9E-21 149.3 10.3 93 132-233 6-140 (141)
36 1vf5_D Rieske iron-sulfur prot 99.7 1.7E-17 6E-22 158.7 2.0 92 134-235 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 1.7E-15 5.7E-20 147.5 3.9 85 143-236 56-167 (204)
38 3hug_B Probable conserved memb 49.5 6.8 0.00023 33.6 1.8 33 495-527 42-74 (108)
39 3fz4_A Putative arsenate reduc 38.6 13 0.00043 32.2 1.9 17 503-519 9-25 (120)
40 3f0i_A Arsenate reductase; str 36.9 14 0.00049 31.8 1.9 17 503-519 10-26 (119)
41 3gkx_A Putative ARSC family re 35.0 16 0.00053 31.6 1.9 17 503-519 10-26 (120)
42 3rdw_A Putative arsenate reduc 32.5 18 0.0006 31.3 1.8 17 503-519 11-27 (121)
43 2q1z_B Anti-sigma factor CHRR, 31.5 25 0.00084 33.0 2.8 30 495-524 23-52 (195)
44 3l78_A Regulatory protein SPX; 29.1 23 0.00077 30.4 1.9 17 503-519 6-22 (120)
45 1s3c_A Arsenate reductase; ARS 28.8 23 0.00079 31.5 1.9 17 503-519 8-24 (141)
46 1rw1_A Conserved hypothetical 28.7 23 0.0008 29.9 1.9 17 503-519 6-22 (114)
47 2kok_A Arsenate reductase; bru 26.9 26 0.00089 29.9 1.9 18 503-520 11-28 (120)
48 3j27_B Matrix protein, small e 24.0 1.5E+02 0.005 23.6 5.6 47 507-553 19-69 (75)
49 1p58_D Envelope protein M; fla 20.5 1.4E+02 0.0048 23.7 4.8 46 508-553 20-69 (75)
50 3udc_A Small-conductance mecha 20.0 1.8E+02 0.006 28.6 6.7 29 540-568 89-117 (285)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=7e-52 Score=437.15 Aligned_cols=313 Identities=22% Similarity=0.350 Sum_probs=239.8
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCcee
Q 037348 123 DWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 202 (579)
Q Consensus 123 ~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~ 202 (579)
.+++.||+||.++|| +|+++.++++|++|+|||+.+|+++|+.|+|||||++|+.|+++++.|+||||||+||.||+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~~~ 82 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQCV 82 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCCEE
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCCcc
Confidence 467999999999999 8899999999999999999899999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccccccCCCceeeeEEEEeccChHhHhhcCCCCCC
Q 037348 203 KIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAH 282 (579)
Q Consensus 203 ~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~lvEN~lD~~H 282 (579)
.+|+. ...++...++++|||++++|+||||+++++.++...+|.++++++++|.......+++|||++++||++|+||
T Consensus 83 ~~P~~--~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H 160 (349)
T 3gke_A 83 HNPHG--NGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGH 160 (349)
T ss_dssp ECCST--TCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEEEEEEEESSCHHHHHHHHHCGGG
T ss_pred ccCcc--ccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEEeEEEEEecCHHhHHHhcccccc
Confidence 99962 2345667889999999999999999998764544557878777777887666677899999999999999999
Q ss_pred CcccccccccccccccCCCceEEEeecccCCcccc-----------cC---C--CCCCCCceEEEEecCeeeeeeceeec
Q 037348 283 IPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQ-----------WG---R--EKDGSMPNFLRFEAPCVLQNNRESVD 346 (579)
Q Consensus 283 ~pfvH~~~~~~~~r~~~~p~~~~v~~~~~~Gf~~~-----------~~---~--~~~~~~~~~~~F~~P~~~~~~~~~~~ 346 (579)
++|+|+++++... .. ....+++. +..++... +. . +...+.+..++|.+||++...+.+..
T Consensus 161 ~~~~H~~~~~~~~--~~-~~~~~v~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~ 236 (349)
T 3gke_A 161 AQYVHRANAQTDA--FD-RLEREVIV-GDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAP 236 (349)
T ss_dssp HHHHTHHHHCCTT--GG-GCEEEEEE-CSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEE
T ss_pred chhccchhhcCcc--cc-CCCCEEEE-cCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEeccc
Confidence 9999999875332 21 12234332 22222110 10 0 11122346799999999877665432
Q ss_pred CC--CCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchhHhhHhhhhHH-HHHHHHHHHHHHhhhhcCCCCcc
Q 037348 347 NK--TGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDWYFHQSASKVF-EQDMGFLSSQNEVLLKEKVPTKE 423 (579)
Q Consensus 347 ~~--~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W~~h~~~~~Vl-deD~~iLe~Qq~~l~~~~~~~k~ 423 (579)
.+ ......+..+++|+|+++++|++++.+.+++......+.+.| ..++++|| +||+.|||.||+++...+. ...
T Consensus 237 ~g~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~--~~~~~~if~~ED~~ile~Qq~~l~~~~~-~~~ 313 (349)
T 3gke_A 237 EGTPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVL--RSWQAQALVKEDKVVVEAIERRRAYVEA-NGI 313 (349)
T ss_dssp TTSCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHH--HHHHHHHTTTHHHHHHHHHHHTHHHHHH-TTC
T ss_pred CCCCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHH--HHHHhhhhhhhhHHHHHHHHHHhhcCCc-ccc
Confidence 11 111233556788999999999999999998865433333333 34678898 9999999999999876421 112
Q ss_pred ccccccccCHHHHHHHHHHHHhC
Q 037348 424 LYFNLRSIDTWVAEYRKWMDKAG 446 (579)
Q Consensus 424 ~y~~~~~sD~~VvafRrWL~k~g 446 (579)
.++ +..+|+++++|||||+++.
T Consensus 314 ~~~-~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 314 RPA-MLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp CCC-CCGGGHHHHHHHHHHHHHH
T ss_pred ccc-cccccHHHHHHHHHHHHHH
Confidence 223 4568999999999999874
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-44 Score=386.58 Aligned_cols=310 Identities=20% Similarity=0.294 Sum_probs=220.1
Q ss_pred cccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCc
Q 037348 121 DYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGK 200 (579)
Q Consensus 121 ~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~ 200 (579)
..+|.+.||+||.++||++|+++.++++|++|+|||+.+|+++||.|+|||||++|+.|+++++.|+||||||+||.||+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 45788999999999999988899999999999999999999999999999999999999999899999999999999999
Q ss_pred eeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCC--CCCCCccccccCCCceee-eEEEEec-cChHhHhhc
Q 037348 201 CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPN--PDKLPWFENFARPGFQDV-STIHELP-YDHSILLEN 276 (579)
Q Consensus 201 c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~--~~~lP~~~~~~~~~~~~~-~~~~~~~-~~~~~lvEN 276 (579)
|+.+|+.. .++...++++|||++++|+||||+++++.+. ...+|.++.++.++|... ....+++ +||++++||
T Consensus 99 ~~~~P~~~---~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN 175 (386)
T 2zyl_A 99 CKLVPYAR---RTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDN 175 (386)
T ss_dssp EEECTTCS---SCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGG
T ss_pred ccccCccc---ccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhh
Confidence 99999753 3456778999999999999999998754322 235688888777777643 3456788 999999999
Q ss_pred CCCCCCCcccccccccccc--cccCCCceEEEeecccCCcccccCCCCCCCCceEEEEecCeeeeeeceeecCCCCCeee
Q 037348 277 LMDPAHIPISHDRTDYSAK--REDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHY 354 (579)
Q Consensus 277 ~lD~~H~pfvH~~~~~~~~--r~~~~p~~~~v~~~~~~Gf~~~~~~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~ 354 (579)
++|+||++|+|+++..... .++.....+ +.......+.................|..|+++.+.+.... .|....
T Consensus 176 ~~D~~H~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~--~g~~~~ 252 (386)
T 2zyl_A 176 VTDMAHFFYIHFGLPTYFKNVFEGHIASQY-LHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRY--GNYKSE 252 (386)
T ss_dssp GGCSTHHHHTTCEEEEEEEEEEETTEEEEE-EEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEE--TTEEEE
T ss_pred cccccchhhhCcCccccccccccCceeEEE-ecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeecc--CCccee
Confidence 9999999999998642110 011000011 00000111100000000112345678899998876544322 222122
Q ss_pred EEEEEEeeeCCCCeEEEEEEEecCCCCCccccCchh---HhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCcccccccccc
Q 037348 355 STGLFLCRPTGQGKSMLIVRFGTTGTSPWIKLFPDW---YFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSI 431 (579)
Q Consensus 355 ~~~v~~~~Pv~pg~trli~~f~~~~~~~~~k~~p~W---~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~s 431 (579)
...++.++|+++++|++++.+..++...+....... .......++++||..|++.|++... . + +...
T Consensus 253 ~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~-------p-~--~~~~ 322 (386)
T 2zyl_A 253 SILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN-------P-L--LVEE 322 (386)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-------C-C--CCGG
T ss_pred EEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC-------C-c--cCcc
Confidence 334556689999999998877665432121100011 1334567899999999999865321 1 2 2347
Q ss_pred CHHHHHHHHHHHHhC
Q 037348 432 DTWVAEYRKWMDKAG 446 (579)
Q Consensus 432 D~~VvafRrWL~k~g 446 (579)
|..+++||||++++-
T Consensus 323 D~~~~~fRrw~~~~~ 337 (386)
T 2zyl_A 323 DGAVYQLRRWYEQFY 337 (386)
T ss_dssp GCSHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999999999953
No 3
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1e-44 Score=394.10 Aligned_cols=331 Identities=21% Similarity=0.260 Sum_probs=228.1
Q ss_pred cccCCCCccChhhhc--ccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc
Q 037348 103 VLVGPASEEESRGER--RVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ 180 (579)
Q Consensus 103 ~~~p~~~y~~~~~~~--~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~ 180 (579)
..+|.+ +|++.++ +|.+.+|.+.|++||.++||++|+++.++++|++||||| .+|+++|+.|+|||||++|+.|+
T Consensus 19 ~~~p~~--~~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g~ 95 (446)
T 1z01_A 19 ARANNA--KTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKP 95 (446)
T ss_dssp TSSSCH--HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSC
T ss_pred ccCCcc--cCHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCCc
Confidence 456666 8899999 999999999999999999999888999999999999999 59999999999999999999998
Q ss_pred c--ccceEEccCcceEEcC-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC------CCCCCCCC-cc-
Q 037348 181 L--IDGRLECLYHGWQFEG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT------PPNPDKLP-WF- 249 (579)
Q Consensus 181 v--~~g~l~CpyHGW~Fd~-dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~------~~~~~~lP-~~- 249 (579)
+ +++.|+||||||+||. +|+|+.+|+.+.. ..+...+|++|||++++|+||||+++++ ++..+.+| .+
T Consensus 96 ~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~-~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~~ 174 (446)
T 1z01_A 96 TCFTKSTISCWYHGFTFDLETGKLVTIVANPED-KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFP 174 (446)
T ss_dssp CCSSTTEEECTTTCEEEETTTCBEEEETTCTTC-TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCTT
T ss_pred cCCCCCEEEeCCCCeEEeCCCCCccccCCCccc-cCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchhh
Confidence 4 5789999999999998 9999999976532 3345678999999999999999998653 12112232 11
Q ss_pred --------------ccccCCCceeeeEEEEeccChHhHhhcCCCCCCCcccccccccccccccCCCceEE--------Ee
Q 037348 250 --------------ENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFE--------VT 307 (579)
Q Consensus 250 --------------~~~~~~~~~~~~~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~--------v~ 307 (579)
+.+.++++......++++|||++++||++|+||+ |+|++++.........++.+. ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (446)
T 1z01_A 175 ERSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVV 253 (446)
T ss_dssp TTTTTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEE
T ss_pred hhhhccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEE
Confidence 1222345554444568999999999999999999 999987532111111111111 11
Q ss_pred e--cccCCccccc---------C---CC----CCCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeE
Q 037348 308 E--RTDRGFAGQW---------G---RE----KDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKS 369 (579)
Q Consensus 308 ~--~~~~Gf~~~~---------~---~~----~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~t 369 (579)
. .+..|+...+ . .+ ..........|.+||++.+... +.. .+..+..++|+++++|
T Consensus 254 ~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~----p~~---~~~~~~~~~Pi~~~~t 326 (446)
T 1z01_A 254 EDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENW----PEE---HVVQYEWYVPITDDTH 326 (446)
T ss_dssp CCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETC----SST---TCEEEEEEEESSSSEE
T ss_pred EecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEecc----CCC---CeEEEEEEEECCCCcE
Confidence 0 0112221111 0 00 0111345677889999865421 111 1234566789999999
Q ss_pred EEEEEEecCCCCCc-cc-cC---chhHhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHH
Q 037348 370 MLIVRFGTTGTSPW-IK-LF---PDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDK 444 (579)
Q Consensus 370 rli~~f~~~~~~~~-~k-~~---p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k 444 (579)
++++.+..+..... .+ .. ..++.......|+.||+.+++.||+++.....+.+. + +..+|.++++||||+++
T Consensus 327 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~-~--l~~~D~~i~~~Rr~l~~ 403 (446)
T 1z01_A 327 EYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDE-Q--LVATDISPITWRKLASR 403 (446)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHC-C--CCGGGHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccc-c--CchhhHHHHHHHHHHHH
Confidence 98777765543210 01 00 011112223457899999999999987542111111 2 35589999999999999
Q ss_pred hCCC
Q 037348 445 AGHG 448 (579)
Q Consensus 445 ~g~g 448 (579)
+..+
T Consensus 404 ~~~~ 407 (446)
T 1z01_A 404 WNRG 407 (446)
T ss_dssp HCSC
T ss_pred HHhh
Confidence 8655
No 4
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.4e-44 Score=388.13 Aligned_cols=329 Identities=13% Similarity=0.189 Sum_probs=234.7
Q ss_pred CcccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccC-C
Q 037348 102 KVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSE-G 179 (579)
Q Consensus 102 ~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~-G 179 (579)
...+|.+.|+|++++++|.+.+|.+.|++||+++||++ |+++.++++|++|+|+|+.+|+++||.|+|||||++|+. |
T Consensus 16 ~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g 95 (409)
T 3n0q_A 16 GHALDQAFYTDAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAK 95 (409)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred cccCCHHHcCCHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcC
Confidence 46899999999999999999999999999999999985 678999999999999999999999999999999999996 8
Q ss_pred ccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCC----CccccccCC
Q 037348 180 QLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL----PWFENFARP 255 (579)
Q Consensus 180 ~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~l----P~~~~~~~~ 255 (579)
.++++.|+||||||+||.||+|+.+|+.+. .-.++..+|++|+|++++|+|||++++++++..+.+ +.++.++..
T Consensus 96 ~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~-~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~~~~~~l~~~~~~ 174 (409)
T 3n0q_A 96 KGNNPKLVCPYHQWTYELDGRLLWARDMGP-DFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAEVARPYLEVHDLS 174 (409)
T ss_dssp EEECSSEECTTTCCEECTTSCEEECTTCCT-TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTCGG
T ss_pred ccCCCEEEECCCCCEEeCCCCcccCCcCCc-ccCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhhhhhhhhccccCC
Confidence 888899999999999999999999997642 123456789999999999999999988764332222 122222222
Q ss_pred Ccee-eeEEEEeccChHhHhhcCCCCCCCccccccccccccc-c-----------------------cCCCceE------
Q 037348 256 GFQD-VSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKR-E-----------------------DAQPLGF------ 304 (579)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r-~-----------------------~~~p~~~------ 304 (579)
++.. .....+++||||+++||++|+||++++|+++...... . ...+..+
T Consensus 175 ~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 254 (409)
T 3n0q_A 175 NAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDG 254 (409)
T ss_dssp GEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTS
T ss_pred CeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeeccccc
Confidence 3332 1345678999999999999999999999987532100 0 0001111
Q ss_pred --EEeecc--c--CCcc--c-----ccC-CCCCCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEE
Q 037348 305 --EVTERT--D--RGFA--G-----QWG-REKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSM 370 (579)
Q Consensus 305 --~v~~~~--~--~Gf~--~-----~~~-~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~tr 370 (579)
.+.... . .++. + .+. .....+......++.||++.+.. + + .+.++.++|+++++|+
T Consensus 255 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~-----p----d-~~~~~~~~P~~p~~t~ 324 (409)
T 3n0q_A 255 QFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL-----S----D-HSIVFRVTPISPTETE 324 (409)
T ss_dssp SEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC-----S----S-CEEEEEEEEEETTEEE
T ss_pred ceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC-----C----C-EEEEEEEEECCCCeEE
Confidence 111000 0 0000 0 000 00113345677889999997643 1 1 2345667899999999
Q ss_pred EEEEEecCCCCCcc-ccCchhHhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 371 LIVRFGTTGTSPWI-KLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 371 li~~f~~~~~~~~~-k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
+.+.++........ +.... ........|.+||..+++..|+++.+.... ...|.+ ..+.++..|.+|+.+.
T Consensus 325 ~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~-~G~~s~--~~E~~v~~F~~w~~~~ 396 (409)
T 3n0q_A 325 VTTKWLVHKDAVEGVDYDLQ-RLTEVWIATNDEDREVVEFNQMGINSPAYE-PGPYSP--TQESGVLQFVEWYLST 396 (409)
T ss_dssp EEEEEEEETTCCBTTTBCHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTTCC-CCBCCT--TTSHHHHHHHHHHHHH
T ss_pred EEEEEEEcCcccccchhhHH-HHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCCCCC--CccHhHHHHHHHHHHH
Confidence 98777664432110 11011 122345689999999999999999875542 234432 2589999999999975
No 5
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=5.1e-44 Score=383.99 Aligned_cols=329 Identities=13% Similarity=0.172 Sum_probs=234.2
Q ss_pred CcccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCccc-CC
Q 037348 102 KVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLS-EG 179 (579)
Q Consensus 102 ~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs-~G 179 (579)
...+|.+.|+|++++++|.+.+|.+.|++||.++||++ |+++.++++|++|+|+|+.+|+++||.|+|||||++|+ .|
T Consensus 18 ~~~lp~~~Y~d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g 97 (412)
T 3vca_A 18 GFSLEQPFYTSPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKAR 97 (412)
T ss_dssp TBCCCHHHHHCHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSS
T ss_pred cCcCCHHHcCCHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeeccc
Confidence 45789999999999999999999999999999999985 67899999999999999999999999999999999998 78
Q ss_pred ccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCC----ccccccCC
Q 037348 180 QLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLP----WFENFARP 255 (579)
Q Consensus 180 ~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP----~~~~~~~~ 255 (579)
.++++.|+||||||+||.||+|+.+|+.+.. -.++..+|++|+|++++|+|||++++++++..+.++ .++.++.+
T Consensus 98 ~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~-~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~~~~ 176 (412)
T 3vca_A 98 QGQVAKLVCPYHQWTYELDGKLIWANDMGPD-FDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVHDLK 176 (412)
T ss_dssp EEECSSEECTTTCCEECTTSCEEECTTCCTT-CCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHHHHHHHHTTCGG
T ss_pred ccCCCEEEcCCCCCEEcCCCccccCCccccc-cCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhhhHHhhccccCC
Confidence 8888999999999999999999999976421 223567899999999999999999887643322221 12222222
Q ss_pred Ccee-eeEEEEeccChHhHhhcCCCCCCCcccccccccccccc-------------------------cCCCceE-----
Q 037348 256 GFQD-VSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKRE-------------------------DAQPLGF----- 304 (579)
Q Consensus 256 ~~~~-~~~~~~~~~~~~~lvEN~lD~~H~pfvH~~~~~~~~r~-------------------------~~~p~~~----- 304 (579)
++.. ....++++||||+++||++|+||++++|+++....... ...+..|
T Consensus 177 ~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 256 (412)
T 3vca_A 177 DAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGD 256 (412)
T ss_dssp GEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTT
T ss_pred CeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCccccccccc
Confidence 3332 23456799999999999999999999999874321000 0001111
Q ss_pred ---EEeecc-cC---Ccc--c-----ccC-CCCCCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeE
Q 037348 305 ---EVTERT-DR---GFA--G-----QWG-REKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKS 369 (579)
Q Consensus 305 ---~v~~~~-~~---Gf~--~-----~~~-~~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~t 369 (579)
.+.... .. .+. + .+. .....+......++.||++.+.. + + .+.++.++|+++++|
T Consensus 257 g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~-----p----d-~~~~~~~~P~~~~~t 326 (412)
T 3vca_A 257 GQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL-----P----D-HSLTFRVMPISPTET 326 (412)
T ss_dssp SSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC-----S----S-CEEEEEEEEEETTEE
T ss_pred CceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC-----C----C-EEEEEEEEECCCCeE
Confidence 111000 00 010 0 000 00113345677889999997643 1 1 234566789999999
Q ss_pred EEEEEEecCCCCCc-cccCchhHhhHhhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHh
Q 037348 370 MLIVRFGTTGTSPW-IKLFPDWYFHQSASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKA 445 (579)
Q Consensus 370 rli~~f~~~~~~~~-~k~~p~W~~h~~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~ 445 (579)
++.+.++....... .+.... ........|.+||..+++..|+++.+.... ...|.+ ..+.++..|.+|+.+.
T Consensus 327 ~v~~~~~~~~d~~~~~d~~~~-~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~-~G~~sp--~~E~~v~~F~~w~~~~ 399 (412)
T 3vca_A 327 EVTTTWLVHKDAVEGVDYDLK-RLTEVWIATNDEDREIVETNQQGILSPAYV-PGPYSP--GQESGVMQFVDWYAAS 399 (412)
T ss_dssp EEEEEEEEETTCCBTTTBCHH-HHHHHHHHHHHHHHHHHHHHHHHHTSTTCC-CCBCCT--TTCHHHHHHHHHHHHH
T ss_pred EEEEEEEEccccccCccHHHH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CCCCCC--CcchhHHHHHHHHHHH
Confidence 99877766443211 011011 122356689999999999999999876542 234532 2489999999999975
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.3e-43 Score=379.66 Aligned_cols=316 Identities=19% Similarity=0.319 Sum_probs=216.1
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc--ccceEEccCcceE
Q 037348 117 RRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL--IDGRLECLYHGWQ 194 (579)
Q Consensus 117 ~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v--~~g~l~CpyHGW~ 194 (579)
.+|.+.+|.+.||+||.++||++++++.++++|++|+|||+ +|+++|+.|+|||||++|+.|.+ +++.|+||||||+
T Consensus 18 ~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~ 96 (392)
T 2de6_A 18 YVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWT 96 (392)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEE
T ss_pred cchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCE
Confidence 45678899999999999999998889999999999999996 99999999999999999999986 4689999999999
Q ss_pred EcC-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc-ccccCCCceeeeEEEEeccChHh
Q 037348 195 FEG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF-ENFARPGFQDVSTIHELPYDHSI 272 (579)
Q Consensus 195 Fd~-dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
||. ||+|+.+|+.+.. ..+...+|++|||++++|+||||++++++++ ..+.+ +++.++++.......+++|||++
T Consensus 97 f~~~~G~~~~~p~~p~~-~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~nwk~ 173 (392)
T 2de6_A 97 YRWEDGVLCDILTNPTS-AQIGRQKLKTYPVQEAKGCVFIYLGDGDPPP--LARDTPPNFLDDDMEILGKNQIIKSNWRL 173 (392)
T ss_dssp EETTTCBEEEETTCTTC-TTTTSCBCCBCCEEEETTEEEEEESSSSCCC--GGGGSCTTTTCTTEEEEEEEEEESSCHHH
T ss_pred EcCCCCccccccCCccc-cccccCCCceEeEEEECCEEEEEeCCCCCCC--hhHhccccccCCCeEEEEEEEEEecChHh
Confidence 998 9999999976532 3345678999999999999999997643321 11222 34445666655556789999999
Q ss_pred HhhcCCCCCCCcccccccccccccccCC-----------CceEEEeecc--cCCcccccC--------C---C------C
Q 037348 273 LLENLMDPAHIPISHDRTDYSAKREDAQ-----------PLGFEVTERT--DRGFAGQWG--------R---E------K 322 (579)
Q Consensus 273 lvEN~lD~~H~pfvH~~~~~~~~r~~~~-----------p~~~~v~~~~--~~Gf~~~~~--------~---~------~ 322 (579)
++||++|+||+ |+|++++......... ...+++.... ..|+...+. . + .
T Consensus 174 ~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~ 252 (392)
T 2de6_A 174 AVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGA 252 (392)
T ss_dssp HHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECE
T ss_pred hhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccc
Confidence 99999999999 9999875321111000 1122222110 112111000 0 0 0
Q ss_pred --CCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCcc-c-c----CchhHhhH
Q 037348 323 --DGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWI-K-L----FPDWYFHQ 394 (579)
Q Consensus 323 --~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~-k-~----~p~W~~h~ 394 (579)
.........+.+|+++.... + ++.. +..+..++|+++++|++++.+.++...... . . ...|. ..
T Consensus 253 ~g~~~~~~~~~~~~P~~~~~~~-~---p~~~---~~~~~~~~Pi~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 324 (392)
T 2de6_A 253 YGEKIVANDISIWLPGVLKVNP-F---PNPD---MMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWK-PM 324 (392)
T ss_dssp ECSBCCCCEEEEETTTEEEEES-C---SSTT---CEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHH-HH
T ss_pred cCCcccceeEEEecccceeccc-c---CCCC---EEEEEEEeecCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHH-Hh
Confidence 00123456677999875421 1 1111 223445689999999988776654432110 0 0 00111 11
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhCCC
Q 037348 395 SASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHG 448 (579)
Q Consensus 395 ~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g~g 448 (579)
....+++||+.|+++||+++.....+.++.. .++|+++++||||+++...+
T Consensus 325 ~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~---~~~D~~~~~~Rr~l~~~~~~ 375 (392)
T 2de6_A 325 ALEGFNNDDIWAREAMVDFYADDKGWVNEIL---FESDEAIVAWRKLASEHNQG 375 (392)
T ss_dssp TTTTTTHHHHHHHHHTHHHHHTSTHHHHCCC---CGGGHHHHHHHHHHHHHCSC
T ss_pred hccCCChhhHHHHHhhhhhhhccccCcccee---cchhHHHHHHHHHHHHHhhh
Confidence 2345789999999999998764321122222 35799999999999998865
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1.8e-41 Score=357.58 Aligned_cols=315 Identities=20% Similarity=0.329 Sum_probs=223.0
Q ss_pred ccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc--cccceEEccCcceEE
Q 037348 118 RVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQF 195 (579)
Q Consensus 118 ~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~--v~~g~l~CpyHGW~F 195 (579)
+|.+.+|++.|++||.++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+|
T Consensus 22 lE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~F 100 (389)
T 3gkq_A 22 IDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTY 100 (389)
T ss_dssp HHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEE
T ss_pred hhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEE
Confidence 688899999999999999999989999999999999999 59999999999999999999997 467899999999999
Q ss_pred cC-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccc-cccCCCceeeeEEEEeccChHhH
Q 037348 196 EG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFE-NFARPGFQDVSTIHELPYDHSIL 273 (579)
Q Consensus 196 d~-dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~~-~~~~~~~~~~~~~~~~~~~~~~l 273 (579)
|. ||+|+.+|+.+.. ..+...+|++|||++++|+|||+++++++++ ..+.++ .+.++++.......+++|||+++
T Consensus 101 dl~dG~cv~iP~~P~~-~~~~~~~L~~ypV~e~~G~VfV~lgd~~~pp--L~e~l~~~~~~~~~~~~~~~~~i~~NWK~~ 177 (389)
T 3gkq_A 101 RWDNGKLVDILTNPTS-VQIGRHALKTYPVREEKGLVFLFVGDQEPHD--LAEDVPPGFLDADLAVHGQHRVVDANWRMG 177 (389)
T ss_dssp ETTTCBEEEETTCTTC-TTTTSCBCCBCCEEEETTEEEEEESSSCCCC--GGGGSCTTTTCTTEEEEEEEEEESSCHHHH
T ss_pred ECCCCCeecccCCccc-ccccccCCcEEEEEEECCeEEEecCCCCCCC--chhhcchhccCCceEEEeEEEEEecCchhh
Confidence 98 8999999986532 2345678999999999999999997543321 112222 34455666555667899999999
Q ss_pred hhcCCCCCCCcccccccccccccccCCCce-----------EEEeecccCCcccccCCC-------------------CC
Q 037348 274 LENLMDPAHIPISHDRTDYSAKREDAQPLG-----------FEVTERTDRGFAGQWGRE-------------------KD 323 (579)
Q Consensus 274 vEN~lD~~H~pfvH~~~~~~~~r~~~~p~~-----------~~v~~~~~~Gf~~~~~~~-------------------~~ 323 (579)
+||++|+||+ |+|++++.........+.. ..+.+....|+...+.+. ..
T Consensus 178 ~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (389)
T 3gkq_A 178 VENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGS 256 (389)
T ss_dssp HHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCS
T ss_pred HHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCC
Confidence 9999999999 9999986432211111111 111111233432221110 11
Q ss_pred CCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCcc------ccCchhHhhHhhh
Q 037348 324 GSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWI------KLFPDWYFHQSAS 397 (579)
Q Consensus 324 ~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~------k~~p~W~~h~~~~ 397 (579)
......+.+..|++++.. .+. ++. ++.+-..+|+++.+++++..+.......-. +.-.+|. -...+
T Consensus 257 ~~~~~~~s~~lP~v~~v~-~~~---~~~---~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 328 (389)
T 3gkq_A 257 KMVAISISVWLPGVLKVD-PFP---DPT---LTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWV-ELALN 328 (389)
T ss_dssp BCCCCEEEEETTTEEEEE-SCS---STT---CEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHH-HHTTT
T ss_pred cccceeEEEEecCeeEec-cCC---CCC---eEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHH-HHhhc
Confidence 124567899999998765 222 232 233444589999888876555433222111 0001221 12356
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhCCC
Q 037348 398 KVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHG 448 (579)
Q Consensus 398 ~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g~g 448 (579)
.+.++|+..-+++|+-++....+.++.. -..|..|+++||...++..|
T Consensus 329 ~f~~~d~~ar~~~~~~y~~~~g~~~e~l---~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 329 GFNDDDILARRSMEPFYADDRGWREEVL---FESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp TTTHHHHHHHHHHHHHHHTSHHHHHCCC---CGGGHHHHHHHHHHHHHCSC
T ss_pred cccchhHHHHHHHHHhhccCCCCChhhc---cCcchhHHHHHHHHHHhccc
Confidence 7889999999999998877543333333 23599999999999999887
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=3.1e-41 Score=356.72 Aligned_cols=314 Identities=17% Similarity=0.315 Sum_probs=223.7
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc--cccceEEccCcceE
Q 037348 117 RRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ--LIDGRLECLYHGWQ 194 (579)
Q Consensus 117 ~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~--v~~g~l~CpyHGW~ 194 (579)
-+|.+.+|++.|++||.++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+
T Consensus 24 yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~ 102 (394)
T 3gcf_A 24 YLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWT 102 (394)
T ss_dssp HHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEE
T ss_pred hhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcE
Confidence 4678899999999999999999989999999999999999 59999999999999999999997 46789999999999
Q ss_pred EcC-CCceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc-ccccCCCceeeeEEEEeccChHh
Q 037348 195 FEG-EGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF-ENFARPGFQDVSTIHELPYDHSI 272 (579)
Q Consensus 195 Fd~-dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (579)
||. +|+|+.+|+.+.. ..+...+|++|||++++|+|||+++++++++ ..+.+ +.+.++++.......+++|||++
T Consensus 103 Fdl~dG~cv~iP~~p~~-~~~~~~~L~~ypV~e~~G~VfV~lgd~~~pp--L~e~L~~~~~d~~~~~~~~~~~i~~NWK~ 179 (394)
T 3gcf_A 103 YDLDDGRLVDVLTSPGS-PVIGKIGIKVYPVQVAQGVVFVFIGDEEPHA--LSEDLPPGFLDEDTHLLGIRRTVQSNWRL 179 (394)
T ss_dssp EETTTCBEEEETTSTTC-TTTTSCBCCEECEEEETTEEEEEESSSCCCC--GGGGSCTTTTCTTEEEEEEEEEESSCHHH
T ss_pred EECCCCceeccCCCccc-ccccccCceEEEEEEECCcEEEecCCCCCCC--chhhcchhhcCCceEEEeEEEEEecCchh
Confidence 998 8999999986532 2345678999999999999999997543321 11222 23445666655566789999999
Q ss_pred HhhcCCCCCCCcccccccccccccccCCCceEEEeec-----------ccCCcccccCC---------------------
Q 037348 273 LLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTER-----------TDRGFAGQWGR--------------------- 320 (579)
Q Consensus 273 lvEN~lD~~H~pfvH~~~~~~~~r~~~~p~~~~v~~~-----------~~~Gf~~~~~~--------------------- 320 (579)
++||++|+||+ |+|++++... ++..+..+.+... ...|....+.+
T Consensus 180 ~~EN~lD~yH~-~vH~~ti~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~ 256 (394)
T 3gcf_A 180 GVENGFDTTHI-FMHRNSPWVS--GNRLAFPYGFVPADRDAMQVYDENWPKGVLDRLSENYMPVFEATLDGETVLSAELT 256 (394)
T ss_dssp HHHHHSCSSGG-GGGTTCHHHH--HTTBCCCSEEEECSTTSEEEECSSSSCEEEECHHHHEEEECEEEETTEEEEECCCC
T ss_pred hHhhccccchh-hCchhhhccc--ccccccCcceeEcCCceEEeccCCCCcchhhhhhcccccccccccccccccccccc
Confidence 99999999999 9999986422 2222222232221 12231111000
Q ss_pred CCCCCCceEEEEecCeeeeeeceeecCCCCCeeeEEEEEEeeeCCCCeEEEEEEEecCCCCCcc------ccCchhHhhH
Q 037348 321 EKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCRPTGQGKSMLIVRFGTTGTSPWI------KLFPDWYFHQ 394 (579)
Q Consensus 321 ~~~~~~~~~~~F~~P~~~~~~~~~~~~~~G~~~~~~~v~~~~Pv~pg~trli~~f~~~~~~~~~------k~~p~W~~h~ 394 (579)
+........+.+..|++.+.. .+ +++. +..+-..+|+++.+++++..........-. +.--+|.. .
T Consensus 257 ~~~~~~~~~~s~~lP~v~~v~-~~---p~~~---~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (394)
T 3gcf_A 257 GEEKKVAAQVSVWLPGVLKVD-PF---PDPT---LIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWRD-D 328 (394)
T ss_dssp SSCBCCCSEEEEETTTEEEEE-SC---SSTT---CEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHHH-H
T ss_pred CcccccceeEEEEecCeeEec-cC---CCCC---eEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhHH-H
Confidence 111224567899999998765 22 2332 223334589999888876444433222111 00112221 2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhcCCCCccccccccccCHHHHHHHHHHHHhCCC
Q 037348 395 SASKVFEQDMGFLSSQNEVLLKEKVPTKELYFNLRSIDTWVAEYRKWMDKAGHG 448 (579)
Q Consensus 395 ~~~~VldeD~~iLe~Qq~~l~~~~~~~k~~y~~~~~sD~~VvafRrWL~k~g~g 448 (579)
..+.+.++|+..-+++|+-++....+.++..+ ..|..|+++||...+++.|
T Consensus 329 ~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~---~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 329 ALHGFNDDDVWAREAQQEFYGERDGWSKEQLF---PPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCC---GGGHHHHHHHHHHHHHCSE
T ss_pred hhcccchhhHHHHHHHHHhhcccCCCChhhcc---CcchhHHHHHHHHHHhccc
Confidence 35678899999999999998875544344332 3599999999999999887
No 9
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=1.2e-36 Score=332.94 Aligned_cols=190 Identities=17% Similarity=0.310 Sum_probs=155.0
Q ss_pred CcccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc
Q 037348 102 KVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ 180 (579)
Q Consensus 102 ~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~ 180 (579)
...+|.+.|+|++++++|.+.+|.+.|++||+++||++ +.++.++++|++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 20 ~~~lp~~~Ytd~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g~ 99 (470)
T 2b1x_A 20 DWTVPAAIINDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAE 99 (470)
T ss_dssp TCEEEGGGSSCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSS
T ss_pred CCcCCHHHcCCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEecccCCCCCEeeccC
Confidence 45799999999999999999999999999999999986 55788999999999999999999999999999999999998
Q ss_pred ccc-ceEEccCcceEEcCCCceeecCCCCCCC--CCC-ccCccceE-EEEEecCeEEEEcCCCCCCCCCCCCcc----cc
Q 037348 181 LID-GRLECLYHGWQFEGEGKCVKIPQLPADA--KIP-RSACVRTY-EVKESQGVVWVWMSQKTPPNPDKLPWF----EN 251 (579)
Q Consensus 181 v~~-g~l~CpyHGW~Fd~dG~c~~iP~~~~~~--~~~-~~~~l~~y-pv~~~~G~V~V~~~~~~~~~~~~lP~~----~~ 251 (579)
+.+ +.|+||||||+||.||+|+.+|+.+... .+. +..++..+ .|++++|+|||++++++++..+.++.+ +.
T Consensus 100 ~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~~~~~d~ 179 (470)
T 2b1x_A 100 MGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDLKFYLDI 179 (470)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGGHHHHHH
T ss_pred cCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcchhHHHHH
Confidence 764 7999999999999999999999864321 122 34678888 577789999999987654332222211 11
Q ss_pred c---cCCCceee--eEEEEeccChHhHhhcC-CCCCCCcccccccc
Q 037348 252 F---ARPGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 291 (579)
Q Consensus 252 ~---~~~~~~~~--~~~~~~~~~~~~lvEN~-lD~~H~pfvH~~~~ 291 (579)
+ ...++... ....+++||||+++||+ +|+||++++|+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~ 225 (470)
T 2b1x_A 180 VLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMV 225 (470)
T ss_dssp HHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHH
T ss_pred HhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhh
Confidence 1 12344433 34568999999999999 99999999999864
No 10
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=3.3e-37 Score=335.90 Aligned_cols=189 Identities=17% Similarity=0.279 Sum_probs=155.9
Q ss_pred cccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc
Q 037348 103 VLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL 181 (579)
Q Consensus 103 ~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v 181 (579)
..+|.+.|+|++++++|.+.+|.+.|++||+++||++ +.++.++++|++|+|||+.+|+++||.|+|||||++|+.|..
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~ 92 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADS 92 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSE
T ss_pred CccCHHHcCCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCccccc
Confidence 5799999999999999999999999999999999984 668899999999999999999999999999999999999876
Q ss_pred -ccceEEccCcceEEcCCCceeecCCCCCCC--CCC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc----cc-c
Q 037348 182 -IDGRLECLYHGWQFEGEGKCVKIPQLPADA--KIP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF----EN-F 252 (579)
Q Consensus 182 -~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~--~~~-~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~----~~-~ 252 (579)
+++.|+||||||+||.||+|+.+|+..... .++ ...+|++|+|++++|+|||++++++++..+.++.+ +. +
T Consensus 93 g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~~~~~l~~~~ 172 (454)
T 2gbw_A 93 GNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIW 172 (454)
T ss_dssp EECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGGGHHHHHHHH
T ss_pred CCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhhhHHHHHHHH
Confidence 578999999999999999999999864321 232 35679999999999999999987754332222211 11 1
Q ss_pred cC--CCceee--eEEEEeccChHhHhhcC-CCCCCCcccccccc
Q 037348 253 AR--PGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 291 (579)
Q Consensus 253 ~~--~~~~~~--~~~~~~~~~~~~lvEN~-lD~~H~pfvH~~~~ 291 (579)
+. .++... ....+++||||+++||+ +|+||++++|+.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~ 216 (454)
T 2gbw_A 173 EGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAAL 216 (454)
T ss_dssp TTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHH
T ss_pred hcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHH
Confidence 11 234433 34568999999999999 79999999996553
No 11
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=2.6e-37 Score=336.12 Aligned_cols=189 Identities=16% Similarity=0.235 Sum_probs=155.0
Q ss_pred cccC-CCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc
Q 037348 103 VLVG-PASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ 180 (579)
Q Consensus 103 ~~~p-~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~ 180 (579)
..+| .+.|+|++++++|.+.+|.+.|++||+++||++ +.++.++++|++|+|+|+.+|+++||.|+|||||++|+.|.
T Consensus 11 ~~~~~~~~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~ 90 (447)
T 2bmo_A 11 GLTQKLLIHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAE 90 (447)
T ss_dssp GCEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSS
T ss_pred CCCCccceeCCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCccccc
Confidence 4678 999999999999999999999999999999985 66889999999999999999999999999999999999998
Q ss_pred c-ccceEEccCcceEEcCCCceeecCCCCCCC--CC-CccCccceEE-EEEecCeEEEEcCCCCCCCCCCCCcc----cc
Q 037348 181 L-IDGRLECLYHGWQFEGEGKCVKIPQLPADA--KI-PRSACVRTYE-VKESQGVVWVWMSQKTPPNPDKLPWF----EN 251 (579)
Q Consensus 181 v-~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~--~~-~~~~~l~~yp-v~~~~G~V~V~~~~~~~~~~~~lP~~----~~ 251 (579)
+ +++.|+||||||+||.||+|+.+|+.+... .+ +.+.+|++|| |++++|+|||++++++++..+.++.+ +.
T Consensus 91 ~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~~~l~~~~~~~~~ 170 (447)
T 2bmo_A 91 AGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEP 170 (447)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHHHHHTTHHHHHHH
T ss_pred cCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHHHHhccHHHHHHH
Confidence 6 568999999999999999999999753110 22 2456899998 99999999999987754332222211 11
Q ss_pred c-c-CCCceee--eEEEEeccChHhHhhcC-CCCCCCcccccccc
Q 037348 252 F-A-RPGFQDV--STIHELPYDHSILLENL-MDPAHIPISHDRTD 291 (579)
Q Consensus 252 ~-~-~~~~~~~--~~~~~~~~~~~~lvEN~-lD~~H~pfvH~~~~ 291 (579)
+ + ..++... ....+++||||+++||+ +|+||++++|+.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l 215 (447)
T 2bmo_A 171 TFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAAL 215 (447)
T ss_dssp HHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHH
T ss_pred HhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhh
Confidence 1 1 2244443 33568999999999999 79999999997654
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=2.9e-36 Score=327.41 Aligned_cols=190 Identities=15% Similarity=0.221 Sum_probs=159.2
Q ss_pred CcccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCc
Q 037348 102 KVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQ 180 (579)
Q Consensus 102 ~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~ 180 (579)
...+|.+.|+|++++++|.+.+|.+.|++||+++||++ |.++.++++|++|||+|+.+|+++||.|+|||||++|+.|.
T Consensus 32 ~~~~~~~~Ytd~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~ 111 (457)
T 3gzx_A 32 NGKLDARIYADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSD 111 (457)
T ss_dssp TTEEEGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSS
T ss_pred CCcCCHHHcCCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCCC
Confidence 45789999999999999999999999999999999985 56899999999999999999999999999999999999987
Q ss_pred -cccceEEccCcceEEcCCCceeecCCCCC-------CCC-CC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCccc
Q 037348 181 -LIDGRLECLYHGWQFEGEGKCVKIPQLPA-------DAK-IP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWFE 250 (579)
Q Consensus 181 -v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~-------~~~-~~-~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~~ 250 (579)
++++.|+||||||+||.||+|+.+|+.+. +.. ++ .+.+|++|+|++++|+||||+++++++..+.++.+.
T Consensus 112 ~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l~e~lg~~~ 191 (457)
T 3gzx_A 112 GGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAM 191 (457)
T ss_dssp EEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCHHHHTTTCH
T ss_pred CCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCChHHHHhhhH
Confidence 56789999999999999999999998531 122 33 457899999999999999999987665444443322
Q ss_pred ----cc-cC--CCceee--eEEEEeccChHhHhhcC-CCCCCCc-ccccccc
Q 037348 251 ----NF-AR--PGFQDV--STIHELPYDHSILLENL-MDPAHIP-ISHDRTD 291 (579)
Q Consensus 251 ----~~-~~--~~~~~~--~~~~~~~~~~~~lvEN~-lD~~H~p-fvH~~~~ 291 (579)
.+ +. .++... ....+++||||+++||+ +|+||++ ++|..++
T Consensus 192 ~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~ 243 (457)
T 3gzx_A 192 PYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGV 243 (457)
T ss_dssp HHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHH
T ss_pred HHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhh
Confidence 11 21 244433 34568999999999999 8999999 9998764
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=1.3e-35 Score=323.80 Aligned_cols=188 Identities=15% Similarity=0.275 Sum_probs=152.9
Q ss_pred cccCCCCccChhhhcccccccccCCeEEeeecCCCCC-CCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcc
Q 037348 103 VLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPD-DAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQL 181 (579)
Q Consensus 103 ~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~-~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v 181 (579)
..+|.+.|+|++++++|.+.+|.+.|++||+++||++ +..+.++++|++|+|+|+.+|+++||.|+|||||++|+.|..
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~ 110 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADG 110 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSE
T ss_pred CcCCHHHcCCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccC
Confidence 5789999999999999999999999999999999986 446888999999999999999999999999999999999876
Q ss_pred -ccceEEccCcceEEcCCCceeecCCCCCC-CCCC-ccCccceEEEEEecCeEEEEcCCCCCCCCCCCCcc----cc-cc
Q 037348 182 -IDGRLECLYHGWQFEGEGKCVKIPQLPAD-AKIP-RSACVRTYEVKESQGVVWVWMSQKTPPNPDKLPWF----EN-FA 253 (579)
Q Consensus 182 -~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~-~~~~-~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~lP~~----~~-~~ 253 (579)
+++.|+||||||+||.||+|+.+|+.... ..++ .+.+|++|+|++++|+|||++++++++..+.++.+ +. ++
T Consensus 111 g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~~~~~l~~~~~ 190 (460)
T 1uli_A 111 GNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGEAKFYMDHMLD 190 (460)
T ss_dssp EECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTTHHHHHHHHHC
T ss_pred CCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcchHHHHHHHhh
Confidence 46799999999999999999999975321 1233 35779999999999999999987754332222211 11 11
Q ss_pred C--CCceee--eEEEEeccChHhHhhcC-CCCCCC-ccccccc
Q 037348 254 R--PGFQDV--STIHELPYDHSILLENL-MDPAHI-PISHDRT 290 (579)
Q Consensus 254 ~--~~~~~~--~~~~~~~~~~~~lvEN~-lD~~H~-pfvH~~~ 290 (579)
. .++..+ ...++++||||+++||+ +|+||+ .++|...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~ 233 (460)
T 1uli_A 191 RTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSG 233 (460)
T ss_dssp SSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHH
T ss_pred cCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhc
Confidence 1 223321 23568999999999999 799999 5999844
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=3e-26 Score=199.85 Aligned_cols=101 Identities=29% Similarity=0.481 Sum_probs=94.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeec
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 204 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~i 204 (579)
..|++|+.++||++++++.+++.|++|+|+| .+|+++|++|+|||+|++|++|.++++.|+||||||+||. ||+|+.+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 4699999999999988999999999999999 5999999999999999999999998899999999999998 9999998
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 037348 205 PQLPADAKIPRSACVRTYEVKESQGVVWVWMS 236 (579)
Q Consensus 205 P~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~ 236 (579)
|.. .+|++|+|++++|.|||+++
T Consensus 81 P~~---------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT---------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC---------SCCCEECEEEETTEEEEECC
T ss_pred CCC---------CCCCEEeEEEECCEEEEEcC
Confidence 852 35999999999999999874
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=2.8e-26 Score=202.78 Aligned_cols=105 Identities=20% Similarity=0.360 Sum_probs=96.0
Q ss_pred CeEEeeecCCCCCCCcEEEEE-cCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeec
Q 037348 127 EWYPLYLTKDVPDDAPLGLTV-FDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 204 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l-~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~i 204 (579)
.|++|+.++||++++.+.+++ .|++|+|+|+.+|+++|++|+|||+|++|++|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 599999999999988899999 99999999998999999999999999999999988899999999999999 599997
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCC
Q 037348 205 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPP 241 (579)
Q Consensus 205 P~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~ 241 (579)
|. ...|+.|+|++++|+|||++++.+++
T Consensus 80 p~---------~~~L~~~~v~~~~g~v~v~~~~~~~~ 107 (111)
T 1vm9_A 80 PD---------DAALAEYPVEVKGDDIYVSTKGILPN 107 (111)
T ss_dssp SS---------SCBCCEECEEEETTEEEECCTTCCCC
T ss_pred CC---------cCCcCEEEEEEECCEEEEeccCcCCC
Confidence 52 34699999999999999999876543
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=1.8e-26 Score=203.00 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=94.2
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEE-EEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeec
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQ-IVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKI 204 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~-lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~i 204 (579)
.|++|+.++||++++++.+++.|++ |+|+|+ +|+++|++|+|||+|++|++|.++++.|+||||||+||. ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999889999999999 999999 999999999999999999999998899999999999997 9999988
Q ss_pred CCCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 037348 205 PQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 238 (579)
Q Consensus 205 P~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~ 238 (579)
|.. .+|++|+|++++|.|||+++++
T Consensus 82 P~~---------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ---------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC---------SCCCEECEEEETTEEEEECC--
T ss_pred CCC---------CCccEEeEEEECCEEEEeCCCC
Confidence 852 4699999999999999999764
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=5.2e-26 Score=201.46 Aligned_cols=104 Identities=24% Similarity=0.353 Sum_probs=96.1
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCC-ccccceEEccCcceEEcC-CCceee
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEG-QLIDGRLECLYHGWQFEG-EGKCVK 203 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G-~v~~g~l~CpyHGW~Fd~-dG~c~~ 203 (579)
..|++|+.++||++++++.+++.|++|+|+|+ +|+++||+|+|||+|++|++| .++++.|+||||||+||. ||+|+.
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~ 82 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 82 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeC
Confidence 36999999999999889999999999999998 999999999999999999999 888899999999999999 899999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 204 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 204 iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
+|.. .+|++|+|++++|.|||++++..
T Consensus 83 ~P~~---------~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 83 PPPC---------EALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp SSCC---------SCCCBCCEEEETTEEEECTTCCB
T ss_pred CCCC---------CCccEEEEEEECCEEEEEecccc
Confidence 8852 45899999999999999997653
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=3.7e-26 Score=203.51 Aligned_cols=104 Identities=24% Similarity=0.422 Sum_probs=95.7
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCE-EEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceee
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQ-QIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVK 203 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~-~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~ 203 (579)
+.|++|+.++||++++++.+++.|+ +|+|+|+ +|+++|++|+|||+|++|++|.++++.|+||||||+||. +|+|+.
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~ 81 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPAS 81 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeC
Confidence 5799999999999988999999999 9999998 999999999999999999999998899999999999997 999999
Q ss_pred cCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 204 IPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 204 iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
+|.. .+|++|+|++++|.|||++++..
T Consensus 82 ~P~~---------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 82 SPCT---------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp TTCC---------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred CCCc---------CCCCEEEEEEECCEEEEecCCcc
Confidence 8852 45999999999999999997653
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=3.5e-26 Score=200.52 Aligned_cols=102 Identities=23% Similarity=0.302 Sum_probs=94.9
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCceeecC
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGKCVKIP 205 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~c~~iP 205 (579)
+|++|+.++||++++.+.+++.|++|+|+|. +|+++|++|+|||+|++|++|.++++.|+||||||+||. ||+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV-DGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 5999999999999999999999999999995 899999999999999999999998899999999999996 99999988
Q ss_pred CCCCCCCCCccCccceEEEEEecCeEEEEcCCC
Q 037348 206 QLPADAKIPRSACVRTYEVKESQGVVWVWMSQK 238 (579)
Q Consensus 206 ~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~ 238 (579)
.. .+|++|||++++|.|||++++.
T Consensus 80 ~~---------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 80 AC---------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp CC---------SCCCEECEEEETTEEEECGGGC
T ss_pred CC---------CCccEEEEEEECCEEEEEcccc
Confidence 52 4699999999999999998754
No 20
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=1.4e-25 Score=204.11 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=98.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCC-eEEeecCCCCCCCC-cccCCcccc--c--eEEccCcceEEcC-C
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKG-ELRCHQDRCPHRLA-KLSEGQLID--G--RLECLYHGWQFEG-E 198 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G-~~~a~~d~CpHrga-pLs~G~v~~--g--~l~CpyHGW~Fd~-d 198 (579)
..|+.|+.++||++++.+.+++.|++|+|||+.+| +++|++|+|||||+ +|++|.+.+ | .|+||||||+||. |
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 36999999999999889999999999999998777 99999999999999 599998752 3 8999999999999 9
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCCCCCCCCC
Q 037348 199 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKTPPNPDKL 246 (579)
Q Consensus 199 G~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~~~~~~~l 246 (579)
|+|+.+|. .+|++|+|++++|.|||++++.+.+..+.+
T Consensus 82 G~~~~~P~----------~~L~~~~v~v~~g~V~V~~~~~~~~~~~~~ 119 (130)
T 2jza_A 82 GFCLEDGA----------YSVAAYDTQVTNGNVQISIADSDVAVDNSQ 119 (130)
T ss_dssp CCBSSCCS----------SCCBCCCEEESSSEEEEECCCCCCCCCCCC
T ss_pred cCCCCCCc----------CcceEEEEEEECCEEEEEeCCCCCCccccc
Confidence 99998884 458999999999999999987765554443
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=1.1e-25 Score=201.68 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=95.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCC-cccCCccccc----eEEccCcceEEcC-CC
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLA-KLSEGQLIDG----RLECLYHGWQFEG-EG 199 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrga-pLs~G~v~~g----~l~CpyHGW~Fd~-dG 199 (579)
..|++|+.++||++++++.+++.|++|+|||+.+|+++|++|+|||+++ +|++|.++++ .|+||||||+||. ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 5799999999999998999999999999999989999999999999999 8999998643 8999999999999 99
Q ss_pred ceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 200 KCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 200 ~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
+|+.+|. .+|++|||++++|.|||++++.+
T Consensus 84 ~~~~~P~----------~~l~~~~v~v~~g~V~v~~~~~~ 113 (119)
T 3c0d_A 84 QCLEDEA----------HCLKTWRVTVDDNQVCYLAKELE 113 (119)
T ss_dssp BBSSCTT----------CBCCEECEEESSSEEEEECCCC-
T ss_pred cCCCCCC----------ceeeEEEEEEECCEEEEEeCCcc
Confidence 9998874 35899999999999999997653
No 22
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=2.1e-25 Score=200.49 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=94.7
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCC--ccccceEEccCcceEEcC-CCcee
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEG--QLIDGRLECLYHGWQFEG-EGKCV 202 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G--~v~~g~l~CpyHGW~Fd~-dG~c~ 202 (579)
..|++|+.++||++++++.+++.|++|+|+|+ +|+++|++|+|||+|++|++| .++++.|+||||||+||+ +|+|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 87 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPT 87 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEE
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEe
Confidence 35999999999999999999999999999997 999999999999999999999 888899999999999996 99999
Q ss_pred ecCCCCCCCCCCccCccceEEEEEecCeEEEEcCCCC
Q 037348 203 KIPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 203 ~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
.+|+. .+|++|||++++|.|||+++...
T Consensus 88 ~~P~~---------~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 88 ALPCV---------LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp ETTCC---------SCCCBCCEEEETTEEEECCC---
T ss_pred CCCCc---------CCcceEEEEEECCEEEEEECccc
Confidence 98853 46999999999999999987654
No 23
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=2.2e-25 Score=197.61 Aligned_cols=101 Identities=19% Similarity=0.319 Sum_probs=92.4
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCC-eEEeecCCCCCCCC-cccCCcccc--c--eEEccCcceEEcC-C
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKG-ELRCHQDRCPHRLA-KLSEGQLID--G--RLECLYHGWQFEG-E 198 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G-~~~a~~d~CpHrga-pLs~G~v~~--g--~l~CpyHGW~Fd~-d 198 (579)
..|++|+.++||++++++.+++.|++|+|||+.+| +++|++|+|||+|+ +|++|.+++ + .|+||||||+||. |
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~t 84 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD 84 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCC
Confidence 35999999999999889999999999999998899 69999999999999 899999852 3 8999999999999 9
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 037348 199 GKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 236 (579)
Q Consensus 199 G~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~ 236 (579)
|+|+.+|. .+|++|||++++|.|||+++
T Consensus 85 G~~~~~P~----------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 85 GLCMEDEQ----------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TEETTTTT----------TCCCEEEEEEETTEEEEECC
T ss_pred ccCCCCCc----------ccccEEeEEEECCEEEEEcC
Confidence 99998874 45899999999999999985
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.92 E-value=5.8e-26 Score=213.11 Aligned_cols=115 Identities=23% Similarity=0.359 Sum_probs=96.3
Q ss_pred ccCCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeCCCeEEeecCCCCCCCCcccCCcccc----ceEEccCcceEEcC-C
Q 037348 124 WTEEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID----GRLECLYHGWQFEG-E 198 (579)
Q Consensus 124 ~~~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~----g~l~CpyHGW~Fd~-d 198 (579)
..+.|++|+.++||++++++.+++.|++|+|||. +|+++||.|+|||||++|++|.+++ +.|+||||||+||. |
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH-KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE-TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 4578999999999988889999999999999995 9999999999999999999999864 68999999999999 9
Q ss_pred Cceee--c-CCCCCCC-C-CCccCccceEEEEEecCeEEEEcCCCC
Q 037348 199 GKCVK--I-PQLPADA-K-IPRSACVRTYEVKESQGVVWVWMSQKT 239 (579)
Q Consensus 199 G~c~~--i-P~~~~~~-~-~~~~~~l~~ypv~~~~G~V~V~~~~~~ 239 (579)
|+|+. + |...... . .++..+|++|+|++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99996 3 6421110 0 012467999999999999999998754
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.3e-25 Score=201.15 Aligned_cols=102 Identities=15% Similarity=0.261 Sum_probs=89.4
Q ss_pred CCeEEeeecCCCCCCCcEEEEEc-CEEEEEEEeCCCeEEeecCCCCCCCCcccCCcccc-----ceEEccCcceEEcC-C
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVF-DQQIVLYKDGKGELRCHQDRCPHRLAKLSEGQLID-----GRLECLYHGWQFEG-E 198 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~-g~~lvl~R~~~G~~~a~~d~CpHrgapLs~G~v~~-----g~l~CpyHGW~Fd~-d 198 (579)
++|++||.++||++++...+.+. |++|+|||+.+|+++|++|+|||++++|+.|.+.+ +.|+||||||+||+ |
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 57999999999999888888875 79999999989999999999999999998876532 35999999999997 9
Q ss_pred CceeecCCCCCCCCCCccCccceEEEEEe-cCeEEEEcCC
Q 037348 199 GKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWVWMSQ 237 (579)
Q Consensus 199 G~c~~iP~~~~~~~~~~~~~l~~ypv~~~-~G~V~V~~~~ 237 (579)
|+|+..|. .++++|||+++ +|.|||...+
T Consensus 88 G~~~~~p~----------~~l~~ypv~ve~dG~V~V~~~a 117 (119)
T 4aiv_A 88 GSCLDDPR----------VSVPVYPARVTPEGRIQVARVA 117 (119)
T ss_dssp CBBSSCTT----------CBCCEECEEECTTSEEEEEEEE
T ss_pred CcCcCCCC----------CccceEEEEEEeCCEEEEecCC
Confidence 99998774 35899999865 8999998753
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.85 E-value=1.6e-21 Score=185.65 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=87.6
Q ss_pred hcccCCCccccccccccccCCCCCCCCCCCcccCCCCccChhhhcccccccccCCeEEeeecCCCCCCCcEEEEEcC--E
Q 037348 73 LRKRTEPKLTKCHAVTDMSSSAVPTPDDHKVLVGPASEEESRGERRVADYDWTEEWYPLYLTKDVPDDAPLGLTVFD--Q 150 (579)
Q Consensus 73 ~~~~~~~~~~~~~a~a~~~~~~~~~p~d~~~~~p~~~y~~~~~~~~e~~~~~~~~W~~v~~~~dl~~~~~~~~~l~g--~ 150 (579)
..+.+||.|.|+.++|++..+.++.|+.....-+...- ....-.+..||.++||++++++.+++.| +
T Consensus 7 ~~~~~rr~fl~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~p~~~v~~~~dL~~g~~~~v~~~~~~~ 75 (175)
T 4aay_B 7 MVDIGRRQFLRGGALAAAGATAAVFGVGAPQARAATAA-----------AGVEYPANRLANISELTLNEPLDVAYPDEDA 75 (175)
T ss_dssp -------------------------------------C-----------CSCCCCCEEEEEGGGCBBTBCEEEESSSTTS
T ss_pred hccccHHHHhhhhHHhhhheeEeccccccccccccccC-----------cccCCCcceEEEHHHCCCCCEEEEEECCCCC
Confidence 35788999999887777777666676644432221100 1112234589999999999999999875 5
Q ss_pred EEEEEEe---------CCCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcCC--CceeecCCCCCCCCCCccCcc
Q 037348 151 QIVLYKD---------GKGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGE--GKCVKIPQLPADAKIPRSACV 219 (579)
Q Consensus 151 ~lvl~R~---------~~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~d--G~c~~iP~~~~~~~~~~~~~l 219 (579)
+++|+|. .+|+++|++|+|||+|++|++| ++++.|+||||||+||.+ |+|+..|.. ..|
T Consensus 76 pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~---------~~L 145 (175)
T 4aay_B 76 AGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT---------QNL 145 (175)
T ss_dssp EEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS---------SCC
T ss_pred EEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC---------CCc
Confidence 8999997 5899999999999999999998 678899999999999985 999998852 458
Q ss_pred ceEEEEE-ecCeEEEE
Q 037348 220 RTYEVKE-SQGVVWVW 234 (579)
Q Consensus 220 ~~ypv~~-~~G~V~V~ 234 (579)
+.|++++ .+|.||+-
T Consensus 146 ~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 146 PQYVLRVADNGDIFAE 161 (175)
T ss_dssp CBEEEEECTTSEEEEE
T ss_pred CEEEEEEEcCCEEEEE
Confidence 9999999 69999965
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.83 E-value=5e-21 Score=175.94 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=88.3
Q ss_pred CCeEEeee-cCCCCCCCcEEEE-EcCEEEEEEEeCCCeE--EeecCCCCCCCCcccCCccccceEEccCcceEEcCCCce
Q 037348 126 EEWYPLYL-TKDVPDDAPLGLT-VFDQQIVLYKDGKGEL--RCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKC 201 (579)
Q Consensus 126 ~~W~~v~~-~~dl~~~~~~~~~-l~g~~lvl~R~~~G~~--~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c 201 (579)
..|+.++. ++||++++.+.+. +.|++++++|+.+|++ +|++|+|||+|++|++|. +++.|+||||||+||.||+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 56777877 8999988876665 5788888888889999 999999999999999887 56899999999999999999
Q ss_pred eecCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 037348 202 VKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 236 (579)
Q Consensus 202 ~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~ 236 (579)
+..|.. .+|+.|+|++++|.|||.+.
T Consensus 99 ~~~P~~---------~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPAP---------LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSCC---------SCCCEEEEEEETTEEEEEEC
T ss_pred ccCCCC---------CCCCEEEEEEECCEEEEEeC
Confidence 998842 46999999999999999974
No 28
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.83 E-value=1.7e-20 Score=170.29 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=88.1
Q ss_pred CeEEeeecCCCCCCCcEEEEEcCEEEEEEEeC--------------------------CCeEEeecCCCCCCCCcccCCc
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------KGELRCHQDRCPHRLAKLSEGQ 180 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~--------------------------~G~~~a~~d~CpHrgapLs~G~ 180 (579)
.|..| .++||++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+|++|++|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46677 88999999999999999999999963 8999999999999999999999
Q ss_pred cccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 037348 181 LIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 233 (579)
Q Consensus 181 v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~-~~G~V~V 233 (579)
++++.|+||||||+||.+|+|+..|.. ..|+.||+++ ++|.|+|
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~---------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP---------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC---------SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC---------CCCCceeEEEEeCCEEEE
Confidence 888899999999999999999998852 3589999999 8999987
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.81 E-value=8.2e-20 Score=166.66 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=87.3
Q ss_pred CeEEeeecCCCCCCCcEEEEEc--CEEEEEEEeC---------CCeEEeecCCCCCCCCcccCCccccceEEccCcceEE
Q 037348 127 EWYPLYLTKDVPDDAPLGLTVF--DQQIVLYKDG---------KGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQF 195 (579)
Q Consensus 127 ~W~~v~~~~dl~~~~~~~~~l~--g~~lvl~R~~---------~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~F 195 (579)
.|+.|+.++||++++++.+++. |++++|+|.. +|+++||.|+|||+|++|+++ .+++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 4789999999999989999986 8999999985 899999999999999999983 567899999999999
Q ss_pred cC--CCceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEE
Q 037348 196 EG--EGKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVW 234 (579)
Q Consensus 196 d~--dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~--~G~V~V~ 234 (579)
|. +|+|+..|.. ..|+.|+++++ +|.|||.
T Consensus 86 d~~~~G~~~~gP~~---------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT---------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS---------SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC---------CCCCEEEEEEECCCCEEEEE
Confidence 98 8999998842 35899999998 6789985
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=2e-20 Score=170.35 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=82.3
Q ss_pred CeEEe-eecCCCCCCCcEEEE-EcCEEEEEEEeCCCe--EEeecCCCCCCCCcccCCccccceEEccCcceEEcCCCcee
Q 037348 127 EWYPL-YLTKDVPDDAPLGLT-VFDQQIVLYKDGKGE--LRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCV 202 (579)
Q Consensus 127 ~W~~v-~~~~dl~~~~~~~~~-l~g~~lvl~R~~~G~--~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~ 202 (579)
.++.+ ...+|+++++...++ +.|.+++++|+.+|+ ++|++|+||||+++|+.|. +++.|+||||||+||.+|+|+
T Consensus 15 ~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~ 93 (133)
T 3azc_A 15 NDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVV 93 (133)
Confidence 33443 456778877765554 456666666666888 9999999999999999988 668999999999999999999
Q ss_pred ecCCCCCCCCCCccCccceEEEEE-ecCeEEEEcCC
Q 037348 203 KIPQLPADAKIPRSACVRTYEVKE-SQGVVWVWMSQ 237 (579)
Q Consensus 203 ~iP~~~~~~~~~~~~~l~~ypv~~-~~G~V~V~~~~ 237 (579)
.+|+. .+|++|||++ ++|.|||.+++
T Consensus 94 ~~P~~---------~~L~~ypv~v~~~g~V~V~~~~ 120 (133)
T 3azc_A 94 RGPAP---------LSLALVKATVTEDDKLVFTPWT 120 (133)
Confidence 98852 3599999999 99999999764
No 31
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.70 E-value=2.7e-17 Score=159.27 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=85.0
Q ss_pred eeecCCCCCCCcEEEEEcCEEEEEEEeC--------------------------CCeEEeecCCCCCCCCcccCCccccc
Q 037348 131 LYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------KGELRCHQDRCPHRLAKLSEGQLIDG 184 (579)
Q Consensus 131 v~~~~dl~~~~~~~~~l~g~~lvl~R~~--------------------------~G~~~a~~d~CpHrgapLs~G~v~~g 184 (579)
.+.++||++|+.+.+.+.|++++|+|.. +|+|+|+.|+|||+|++|+.|.++.+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 4789999999999999999999999852 79999999999999999999988778
Q ss_pred eEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 037348 185 RLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 233 (579)
Q Consensus 185 ~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~-~~G~V~V 233 (579)
.|.||||||+||.+|+++..|.. ..|..||+++ ++|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa~---------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPAP---------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSCC---------SCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCCC---------CCCcceeEEEEECCEEEE
Confidence 99999999999999999998852 3588999998 8999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.70 E-value=4.5e-17 Score=156.80 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=82.7
Q ss_pred eEEeeecCCCCCCCcEEEEEcCEEEEEEEe----------------------------------------CCCeEEeecC
Q 037348 128 WYPLYLTKDVPDDAPLGLTVFDQQIVLYKD----------------------------------------GKGELRCHQD 167 (579)
Q Consensus 128 W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~----------------------------------------~~G~~~a~~d 167 (579)
|..| .+++|++|+.+.+.+.|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5555 8899999999999999999999992 2799999999
Q ss_pred CCCCCCCcccCC-ccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEe-cCeEEE
Q 037348 168 RCPHRLAKLSEG-QLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKES-QGVVWV 233 (579)
Q Consensus 168 ~CpHrgapLs~G-~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~-~G~V~V 233 (579)
+|||+|++|++| ..+.+.|.||||||+||.+|+|+..|.. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~---------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP---------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC---------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC---------CCCceEEEEEEeCCEEEE
Confidence 999999999984 3344799999999999999999998852 35889999986 688887
No 33
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.70 E-value=2.2e-17 Score=155.84 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=63.1
Q ss_pred CCeEEeecCCCCCCCCcccCCccccceEEccCcceEEcC-CCc-eeecCCCCCCCCCCccCccceEEEEEecCeEEEEcC
Q 037348 159 KGELRCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEG-EGK-CVKIPQLPADAKIPRSACVRTYEVKESQGVVWVWMS 236 (579)
Q Consensus 159 ~G~~~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~-dG~-c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V~~~ 236 (579)
+| ++||.|+|||+|++|+.|.++++.|.||||||+||. +|. |+..|.. .+|..|++++++|.|||+++
T Consensus 78 ~g-v~A~~~~CpH~G~~L~~g~~~~~~i~CP~Hgs~Fd~~tG~~~~~gPa~---------~~L~~~~v~v~~g~V~v~~~ 147 (165)
T 1nyk_A 78 EG-VVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP---------RPVPQLPVRVEDGVLVAAGE 147 (165)
T ss_dssp TT-EEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCS---------SCCCEECEEEETTEEEECSS
T ss_pred CC-EEEEEeecCCCCeEcccccCCCCEEECCCCCCEEcCCCCCeeecCCCC---------CCCcEEEEEEECCEEEEEec
Confidence 45 999999999999999999988899999999999999 486 9998842 36999999999999999987
Q ss_pred CCC
Q 037348 237 QKT 239 (579)
Q Consensus 237 ~~~ 239 (579)
...
T Consensus 148 ~~~ 150 (165)
T 1nyk_A 148 FLG 150 (165)
T ss_dssp CSS
T ss_pred Ccc
Confidence 543
No 34
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.69 E-value=6.6e-17 Score=155.33 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=83.1
Q ss_pred CCeEEeeecCCCCCCCcEEEEEcCEEEEEEEeC--------------------------CCeEEeecCCCCCCCCc-ccC
Q 037348 126 EEWYPLYLTKDVPDDAPLGLTVFDQQIVLYKDG--------------------------KGELRCHQDRCPHRLAK-LSE 178 (579)
Q Consensus 126 ~~W~~v~~~~dl~~~~~~~~~l~g~~lvl~R~~--------------------------~G~~~a~~d~CpHrgap-Ls~ 178 (579)
..|+.| .++||++|+...+.+.|++++|+|.. +|+|+|+.|+|||+||. +..
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~ 139 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGE 139 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccC
Confidence 468999 69999999999999999999999974 68999999999999995 655
Q ss_pred CccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEEecCeEEE
Q 037348 179 GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKESQGVVWV 233 (579)
Q Consensus 179 G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~~~G~V~V 233 (579)
+ .+.+.+.||||||+||.+|+|+..|.. ..|..+|+++++|.|||
T Consensus 140 ~-~~~~~~~CPcHGs~FD~~G~v~~gPa~---------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 140 A-GDFGGWFCPCHGSHYDISGRIRKGPAP---------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp E-TTTTEEEETTTTEEECTTCCEEESSCC---------SCCCCCCEEEETTEEEE
T ss_pred C-CCCCEEEcCCCCCEECCCCCEecCCCC---------CCcceEEEEEECCEEEE
Confidence 4 356899999999999999999998842 24667777778999987
No 35
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.69 E-value=5.4e-17 Score=149.27 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=82.2
Q ss_pred eecCCCCCCCcEEEEEcCEEEEEEEe----------------------------------------CCCeEEeecCCCCC
Q 037348 132 YLTKDVPDDAPLGLTVFDQQIVLYKD----------------------------------------GKGELRCHQDRCPH 171 (579)
Q Consensus 132 ~~~~dl~~~~~~~~~l~g~~lvl~R~----------------------------------------~~G~~~a~~d~CpH 171 (579)
..+++|++|+.+.+...|+++.|.|. .+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 35789999999999999999999884 17899999999999
Q ss_pred CCCcccC-CccccceEEccCcceEEcCCCceeecCCCCCCCCCCccCccceEEEEE-ecCeEEE
Q 037348 172 RLAKLSE-GQLIDGRLECLYHGWQFEGEGKCVKIPQLPADAKIPRSACVRTYEVKE-SQGVVWV 233 (579)
Q Consensus 172 rgapLs~-G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~~~~~~~~~l~~ypv~~-~~G~V~V 233 (579)
+|++|+. +.++++.|.||||||+||.+|+|+..|.. ..|..||+++ ++|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~---------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP---------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC---------SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC---------CCCCceeEEEEECCEEEE
Confidence 9999998 66667899999999999999999998852 3588999999 7999987
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.65 E-value=1.7e-17 Score=158.69 Aligned_cols=92 Identities=10% Similarity=0.167 Sum_probs=79.8
Q ss_pred cCCCCCCCcEEEE-EcCEEEEEEEeCCCeE--EeecCCCCCCCCcccCCccccceEEccCcceEEcCCCceeecCCCCCC
Q 037348 134 TKDVPDDAPLGLT-VFDQQIVLYKDGKGEL--RCHQDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGEGKCVKIPQLPAD 210 (579)
Q Consensus 134 ~~dl~~~~~~~~~-l~g~~lvl~R~~~G~~--~a~~d~CpHrgapLs~G~v~~g~l~CpyHGW~Fd~dG~c~~iP~~~~~ 210 (579)
.+||+++....+. +.|++++++|+.+|++ +|+.|+|||+|++|++|. +++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 4678877766665 6788999999889987 999999999999999887 56789999999999999999988842
Q ss_pred CCCCccCccceEEEEEecCeEEEEc
Q 037348 211 AKIPRSACVRTYEVKESQGVVWVWM 235 (579)
Q Consensus 211 ~~~~~~~~l~~ypv~~~~G~V~V~~ 235 (579)
..|+.||+++++|.|||.+
T Consensus 146 ------~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 ------LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp ------SCCBCCCCCCSSSSCCCCC
T ss_pred ------CCCCeEEEEEECCEEEEEe
Confidence 3589999999999999876
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.54 E-value=1.7e-15 Score=147.53 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=72.8
Q ss_pred EEEEEcCEEEEEEEeC------------CCeEEeecCCCCCCCCcccCCcc-----------ccceEEccCcceEEcCC-
Q 037348 143 LGLTVFDQQIVLYKDG------------KGELRCHQDRCPHRLAKLSEGQL-----------IDGRLECLYHGWQFEGE- 198 (579)
Q Consensus 143 ~~~~l~g~~lvl~R~~------------~G~~~a~~d~CpHrgapLs~G~v-----------~~g~l~CpyHGW~Fd~d- 198 (579)
..+++.+.+++++|+. +|+++|+.|+|||+|++|++|.+ +++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4577888888888876 79999999999999999999864 56899999999999996
Q ss_pred -CceeecCCCCCCCCCCccCccceEEEEEe--cCeEEEEcC
Q 037348 199 -GKCVKIPQLPADAKIPRSACVRTYEVKES--QGVVWVWMS 236 (579)
Q Consensus 199 -G~c~~iP~~~~~~~~~~~~~l~~ypv~~~--~G~V~V~~~ 236 (579)
|+|+..|.. ..|+.|++.++ +|.|||...
T Consensus 136 GG~v~~gPa~---------~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP---------RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC---------SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC---------CCCCeEeeEEEecCCEEEEEeC
Confidence 699998842 34889999987 899999763
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.54 E-value=6.8 Score=33.64 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=26.8
Q ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 037348 495 NLANRYFRHVIHCKGCRSAVKAFNTWKNSLSTA 527 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~Alk~~~~l~~~l~~~ 527 (579)
.--.++++|-..|..|++.+..++.+...|..+
T Consensus 42 ~e~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~~l 74 (108)
T 3hug_B 42 ADRREFEAHLAGCPECRGAVTELCGVPALLSQL 74 (108)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 445689999999999999999999776666543
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=38.63 E-value=13 Score=32.16 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=15.5
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|+..|+.|++|++.++.
T Consensus 9 ~~~~C~~c~ka~~~L~~ 25 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDD 25 (120)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHH
Confidence 67899999999999986
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=36.86 E-value=14 Score=31.76 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.4
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (119)
T 3f0i_A 10 HNPKCSKSRETLALLEN 26 (119)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67799999999999986
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=35.04 E-value=16 Score=31.58 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=15.4
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIE 26 (120)
T ss_dssp ECTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67799999999999986
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=32.47 E-value=18 Score=31.29 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=15.4
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 11 ~~p~C~~c~ka~~~L~~ 27 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQ 27 (121)
T ss_dssp CCTTCHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999986
No 43
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=31.48 E-value=25 Score=32.96 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=24.3
Q ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q 037348 495 NLANRYFRHVIHCKGCRSAVKAFNTWKNSL 524 (579)
Q Consensus 495 qllDRy~~HT~~C~sC~~Alk~~~~l~~~l 524 (579)
..--..++|...|+.|++.++.++.+.-.+
T Consensus 23 ~~~~~ve~HL~~C~~Cr~~v~~l~~~~~~l 52 (195)
T 2q1z_B 23 AFSLVVATHLSLCDECRARAGALDAVGGSL 52 (195)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHCHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999988766444
No 44
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=29.14 E-value=23 Score=30.44 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.1
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNR 22 (120)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999986
No 45
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=28.84 E-value=23 Score=31.46 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=15.3
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|++.++.
T Consensus 8 ~~p~C~~crkak~~L~~ 24 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRN 24 (141)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 57899999999999986
No 46
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=28.73 E-value=23 Score=29.94 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=15.2
Q ss_pred hcccchhhHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNT 519 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~ 519 (579)
|...|+.|++|.+.++.
T Consensus 6 ~~~~C~~C~kak~~L~~ 22 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDE 22 (114)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 56799999999999986
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=26.95 E-value=26 Score=29.93 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.7
Q ss_pred hcccchhhHHHHHHHHHH
Q 037348 503 HVIHCKGCRSAVKAFNTW 520 (579)
Q Consensus 503 HT~~C~sC~~Alk~~~~l 520 (579)
|+..|+.|++|++.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 567999999999999873
No 48
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=24.03 E-value=1.5e+02 Score=23.62 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhc-cchhHHHHHHHHHHH
Q 037348 507 CKGCRSAVKAFNTWKNSLST---AAALLTALAILG-AGRQWRAFCLVSASL 553 (579)
Q Consensus 507 C~sC~~Alk~~~~l~~~l~~---~~va~~~~a~~~-~~~~~~~~~~~~a~~ 553 (579)
+-+=+.+-+.+++.|....- .++++++++.+. ....+|+++++++++
T Consensus 19 Wl~~~~~~~~l~rvE~WilrNp~~al~~~~~~w~lG~~~~Qrvi~iil~ll 69 (75)
T 3j27_B 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRALIFILLTA 69 (75)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHSSCSSHHHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55567788888888877653 444444455554 455566655544433
No 49
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=20.53 E-value=1.4e+02 Score=23.71 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhc-cchhHHHHHHHHHHH
Q 037348 508 KGCRSAVKAFNTWKNSLST---AAALLTALAILG-AGRQWRAFCLVSASL 553 (579)
Q Consensus 508 ~sC~~Alk~~~~l~~~l~~---~~va~~~~a~~~-~~~~~~~~~~~~a~~ 553 (579)
-+=..+-+.+++.|....- .++++++++.+. +...+|+++++++++
T Consensus 20 l~~~~~~~~l~kvE~WilrNp~~al~a~~~~w~lG~~~~Qrvi~~il~ll 69 (75)
T 1p58_D 20 MSSEGAWKHAQRIETWILRHPGFTIMAAILAYTIGTTHFQRVLIFILLTA 69 (75)
T ss_pred cCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3445666777776665542 344444455444 455566655544433
No 50
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=20.01 E-value=1.8e+02 Score=28.63 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037348 540 GRQWRAFCLVSASLCLAGVYACSTAISMN 568 (579)
Q Consensus 540 ~~~~~~~~~~~a~~~~a~~~~~~~~~~~~ 568 (579)
+......+++++++++|+.+|++..++++
T Consensus 89 g~~~~~l~a~~g~~g~aig~a~q~~l~n~ 117 (285)
T 3udc_A 89 NIDMTSLLAVAGIGSLAIGFGAQNLVKDM 117 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888899999877755443
Done!