BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037351
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 28 STEFEVGGDNGWH--VPNAKEGAQMYNKWASNHRFKIGDTLQFKY--KKDSVMAVTEVEY 83
+T +VG GW VP Y KWAS+++F +GD+L F Y K +V+ V + ++
Sbjct: 2 ATVHKVGDSTGWTTLVP------YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQF 55
Query: 84 KKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKV 130
K C SS P +G L +PG FYF+ G+ GHC+ G K+ IKV
Sbjct: 56 KSCNSSSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 28 STEFEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCR 87
ST VG + GW VP++ Y++WA+ F++GD+LQF + ++ V E+E K+
Sbjct: 3 STVHIVGDNTGWSVPSSP---NFYSQWAAGKTFRVGDSLQFNFPANA-HNVHEMETKQSF 58
Query: 88 SSHPLFYSNN-----GNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131
+ S+N + +L + G+ YF+ V HC G K+ I V+
Sbjct: 59 DACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 107
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 30 EFEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKKD--SVMAVTEVEYKKCR 87
+++VGGD W P+ + Y WA+ F++GD L+F + V VT+ + C+
Sbjct: 3 DYDVGGDMEWKRPS---DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCK 59
Query: 88 SSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131
+P+ + L G Y+I V HC G K+ I V+
Sbjct: 60 KENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 31 FEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKKD--SVMAVTEVEYKKCRS 88
+ VGG GW W RF+ GD L F Y +V+ V + + C +
Sbjct: 3 YVVGGSGGWTFNT--------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54
Query: 89 SHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131
+G KL K G YFI GHC+ G+K+ + L
Sbjct: 55 PAGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 55 ASNHRFKIGDTLQFKYKKD--SVMAVTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYF 112
A F+ GD L FKY K +V+AV Y C + ++G KL + G YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYF 72
Query: 113 ISGVSGHCERGLKMII 128
I GHC G+K+ I
Sbjct: 73 ICSFPGHCGGGMKIAI 88
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 34 GGDNGWHVPNAKEG---AQMYNKWASNHRFKI-GDTLQFKYKKDSVMAVTEVEYKKCRSS 89
G N W VP+ KEG A++ + KI D+ KKD + ++ +++K
Sbjct: 30 GKKNCW-VPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88
Query: 90 HPLFYSNNGNTVYKLAK---PGLFYFISGV 116
+ Y N + +Y L GL Y SG+
Sbjct: 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGL 118
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 34 GGDNGWHVPNAKEG---AQMYNKWASNHRFKI-GDTLQFKYKKDSVMAVTEVEYKKCRSS 89
G N W VP+ KEG A++ + KI D+ KKD + ++ +++K
Sbjct: 30 GKKNCW-VPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88
Query: 90 HPLFYSNNGNTVYKLAK---PGLFYFISGV 116
+ Y N + +Y L GL Y SG+
Sbjct: 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGL 118
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 34 GGDNGWHVPNAKEG---AQMYNKWASNHRFKI-GDTLQFKYKKDSVMAVTEVEYKKCRSS 89
G N W VP+ KEG A++ + KI D+ KKD + ++ +++K
Sbjct: 25 GKKNCW-VPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 83
Query: 90 HPLFYSNNGNTVYKLAK---PGLFYFISGV 116
+ Y N + +Y L GL Y SG+
Sbjct: 84 ANMTYLNEASVLYNLRSRYTSGLIYTYSGL 113
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 34 GGDNGWHVPNAKEG---AQMYNKWASNHRFKI-GDTLQFKYKKDSVMAVTEVEYKKCRSS 89
G N W VP+ KEG A++ + KI D+ KKD + ++ +++K
Sbjct: 30 GKKNCW-VPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88
Query: 90 HPLFYSNNGNTVYKLAK---PGLFYFISGV 116
+ Y N + +Y L GL Y SG+
Sbjct: 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGL 118
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92s Mutant Complexed With Carbamyl Phosphate And
N-Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92a Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 34 GGDNGWHVPNAKEG---AQMYNKWASNHRFKI-GDTLQFKYKKDSVMAVTEVEYKKCRSS 89
G N W VP+ KEG A++ + KI D+ KKD + ++ +++K
Sbjct: 26 GKKNCW-VPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 84
Query: 90 HPLFYSNNGNTVYKLAK---PGLFYFISGV 116
+ Y N + +Y L GL Y SG+
Sbjct: 85 ANMTYLNEASVLYNLRSRYTSGLIYTYSGL 114
>pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92v Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLFYSNNGNTVYKLAKP- 107
+ Y WA+ + + G +LQ + DS A +V Y K + P F GN ++ KP
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF----GN--WEPEKPI 289
Query: 108 --GLFYFI----------SGVSGHC---ERGLKMIIKVLETPS 135
+FI +GV HC R ++ V+++P+
Sbjct: 290 RDQYQHFIVDERKMALTNNGVFSHCLPLRRNVRATDAVMDSPN 332
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 49 QMYNKWASNHRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF 93
+ Y WA+ + + G +LQ + DS A +V Y K + P F
Sbjct: 236 ERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALPFF 280
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 90 HPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVLET 133
LF NG TV + G FY + G G+C R L ++ + T
Sbjct: 319 EALFAQPNGXTV---DEDGNFYIVDGFKGYCLRKLDILDGYVST 359
>pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1210
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 119 HCERGLKMIIKVLETPSPFPYQNQTTTPPPSNDAAIERPAAIASLTIMLLIMSFSGLLLY 178
HCE MI+ +L + PFP NQ +P + +A+ + A LT + M +LY
Sbjct: 729 HCEIHPAMILGILASIIPFPDHNQ--SPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILY 786
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,784,850
Number of Sequences: 62578
Number of extensions: 187224
Number of successful extensions: 340
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 22
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)