Query 037351
Match_columns 178
No_of_seqs 142 out of 822
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.5E-42 3.3E-47 280.4 15.0 108 23-137 15-124 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.1E-31 2.4E-36 195.2 5.6 83 39-124 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.7 3.3E-07 7.1E-12 70.0 11.4 69 56-131 47-119 (119)
4 PF00127 Copper-bind: Copper b 98.4 3.8E-06 8.2E-11 61.8 8.9 74 56-131 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.2 1E-05 2.2E-10 59.6 8.7 73 56-131 17-99 (99)
6 TIGR03102 halo_cynanin halocya 98.2 1.5E-05 3.2E-10 61.2 8.7 86 27-131 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.0 5.2E-05 1.1E-09 59.4 9.2 80 32-131 42-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.0 4.7E-05 1E-09 58.5 8.0 73 56-133 15-89 (116)
9 TIGR03095 rusti_cyanin rusticy 97.2 0.0011 2.4E-08 52.7 6.9 33 99-131 116-148 (148)
10 TIGR02657 amicyanin amicyanin. 97.1 0.0038 8.3E-08 44.4 7.5 68 57-131 12-83 (83)
11 PF06525 SoxE: Sulfocyanin (So 97.0 0.003 6.5E-08 52.9 7.8 31 106-136 161-191 (196)
12 KOG3858 Ephrin, ligand for Eph 95.9 0.14 3.1E-06 44.0 11.2 76 59-135 46-164 (233)
13 PF00812 Ephrin: Ephrin; Inte 95.6 0.011 2.3E-07 47.3 3.1 73 59-131 25-144 (145)
14 TIGR03094 sulfo_cyanin sulfocy 95.4 0.024 5.2E-07 47.2 4.5 31 105-135 159-189 (195)
15 COG4454 Uncharacterized copper 94.7 0.049 1.1E-06 44.2 4.4 37 95-131 121-157 (158)
16 TIGR03096 nitroso_cyanin nitro 93.4 0.12 2.6E-06 41.0 4.1 61 56-121 61-123 (135)
17 PF13473 Cupredoxin_1: Cupredo 92.6 0.26 5.5E-06 36.1 4.6 65 56-130 35-104 (104)
18 PF07732 Cu-oxidase_3: Multico 91.6 0.22 4.8E-06 37.8 3.4 76 58-133 28-116 (117)
19 PRK02888 nitrous-oxide reducta 90.2 0.66 1.4E-05 45.1 6.0 71 57-132 556-634 (635)
20 PF07172 GRP: Glycine rich pro 87.5 0.33 7.1E-06 36.2 1.5 28 1-31 1-28 (95)
21 TIGR02376 Cu_nitrite_red nitri 87.2 1.8 3.9E-05 38.1 6.3 74 58-134 61-148 (311)
22 PF00116 COX2: Cytochrome C ox 86.9 2.9 6.2E-05 31.9 6.5 64 58-131 48-120 (120)
23 MTH00047 COX2 cytochrome c oxi 86.9 10 0.00022 31.5 10.3 66 59-134 119-193 (194)
24 PLN02604 oxidoreductase 83.9 7.5 0.00016 37.1 9.1 78 57-134 56-146 (566)
25 TIGR02866 CoxB cytochrome c ox 83.3 4.7 0.0001 33.2 6.6 68 58-133 119-193 (201)
26 PLN02354 copper ion binding / 82.5 14 0.00031 35.2 10.4 72 58-133 60-147 (552)
27 TIGR03388 ascorbase L-ascorbat 82.5 3.7 8E-05 38.8 6.4 77 58-134 34-123 (541)
28 PLN00044 multi-copper oxidase- 80.9 4.6 9.9E-05 39.0 6.5 72 59-134 63-150 (596)
29 COG1622 CyoA Heme/copper-type 78.0 6.1 0.00013 34.1 5.8 92 32-135 117-215 (247)
30 TIGR02695 azurin azurin. Azuri 76.3 3 6.5E-05 32.7 3.1 29 100-129 91-124 (125)
31 PLN02835 oxidoreductase 75.0 13 0.00028 35.4 7.5 76 58-133 62-149 (539)
32 PLN02168 copper ion binding / 73.5 12 0.00027 35.6 7.1 77 58-134 59-147 (545)
33 PLN02191 L-ascorbate oxidase 72.6 10 0.00022 36.3 6.3 76 58-133 56-144 (574)
34 PRK10378 inactive ferrous ion 71.1 30 0.00065 31.8 8.7 68 57-132 45-117 (375)
35 PF02839 CBM_5_12: Carbohydrat 71.1 1.9 4.1E-05 26.4 0.7 24 51-77 1-24 (41)
36 PLN02792 oxidoreductase 68.6 17 0.00037 34.6 6.8 71 58-132 49-135 (536)
37 TIGR03389 laccase laccase, pla 62.4 26 0.00057 33.1 6.8 76 58-134 36-124 (539)
38 PF11044 TMEMspv1-c74-12: Plec 62.4 5.7 0.00012 26.1 1.7 20 159-178 7-26 (49)
39 TIGR01480 copper_res_A copper- 59.7 23 0.0005 34.2 6.0 75 58-133 78-163 (587)
40 TIGR02228 sigpep_I_arch signal 58.7 42 0.00091 26.8 6.5 16 57-72 58-73 (158)
41 TIGR01480 copper_res_A copper- 58.4 23 0.00049 34.2 5.7 87 38-130 487-586 (587)
42 PLN02991 oxidoreductase 57.6 38 0.00083 32.4 7.0 76 58-133 61-148 (543)
43 MTH00154 COX2 cytochrome c oxi 57.6 1.1E+02 0.0024 25.8 9.2 30 101-132 183-215 (227)
44 PRK09723 putative fimbrial-lik 56.3 1.2E+02 0.0026 28.4 9.8 38 2-40 2-39 (421)
45 PF07731 Cu-oxidase_2: Multico 50.4 33 0.00072 25.5 4.4 75 58-132 36-136 (138)
46 PF12292 DUF3624: Protein of u 48.2 14 0.00031 26.7 1.9 24 154-177 41-64 (77)
47 cd06555 ASCH_PF0470_like ASC-1 47.0 11 0.00024 28.7 1.3 14 58-71 30-43 (109)
48 KOG1546 Metacaspase involved i 44.4 12 0.00026 34.1 1.3 15 59-73 134-148 (362)
49 MTH00140 COX2 cytochrome c oxi 43.3 37 0.0008 28.6 4.1 30 101-132 183-215 (228)
50 PF12961 DUF3850: Domain of Un 43.0 16 0.00034 26.1 1.5 13 57-69 26-38 (72)
51 MTH00027 COX2 cytochrome c oxi 42.3 2.3E+02 0.005 24.6 10.6 30 101-132 217-249 (262)
52 PF04014 Antitoxin-MazE: Antid 40.4 21 0.00045 22.5 1.6 33 32-73 2-34 (47)
53 PF11132 SplA: Transcriptional 38.0 27 0.00058 25.1 2.0 26 58-83 4-32 (75)
54 KOG1263 Multicopper oxidases [ 37.0 1.5E+02 0.0032 28.7 7.5 78 58-137 61-152 (563)
55 smart00495 ChtBD3 Chitin-bindi 35.5 23 0.00051 21.5 1.3 19 51-69 1-19 (41)
56 PRK10883 FtsI repressor; Provi 34.8 1.2E+02 0.0026 28.3 6.4 75 58-135 79-168 (471)
57 PTZ00047 cytochrome c oxidase 34.4 62 0.0013 26.5 3.9 30 101-132 116-148 (162)
58 MTH00168 COX2 cytochrome c oxi 34.2 60 0.0013 27.3 4.0 31 101-133 183-216 (225)
59 MTH00129 COX2 cytochrome c oxi 33.8 56 0.0012 27.7 3.7 30 101-132 183-215 (230)
60 KOG3653 Transforming growth fa 33.6 1.1E+02 0.0024 29.5 5.8 16 109-124 114-129 (534)
61 MTH00117 COX2 cytochrome c oxi 33.0 65 0.0014 27.2 4.0 30 101-132 183-215 (227)
62 PF06462 Hyd_WA: Propeller; I 32.8 82 0.0018 18.5 3.3 26 100-125 2-27 (32)
63 KOG1263 Multicopper oxidases [ 32.4 1.2E+02 0.0025 29.4 6.0 41 96-136 499-541 (563)
64 MTH00098 COX2 cytochrome c oxi 32.3 65 0.0014 27.3 3.9 30 101-132 183-215 (227)
65 MTH00139 COX2 cytochrome c oxi 31.7 3.1E+02 0.0067 23.0 10.2 30 101-132 183-215 (226)
66 TIGR01432 QOXA cytochrome aa3 30.9 3.1E+02 0.0067 22.7 9.3 68 59-133 133-206 (217)
67 TIGR03390 ascorbOXfungal L-asc 30.8 1.6E+02 0.0035 27.9 6.6 78 59-137 42-134 (538)
68 MTH00038 COX2 cytochrome c oxi 30.7 77 0.0017 26.8 4.0 30 101-132 183-215 (229)
69 PF10670 DUF4198: Domain of un 29.3 2.6E+02 0.0057 22.0 6.8 56 59-114 146-209 (215)
70 KOG2315 Predicted translation 29.2 99 0.0021 30.0 4.8 61 55-115 210-278 (566)
71 MTH00023 COX2 cytochrome c oxi 28.6 82 0.0018 26.8 3.9 31 101-133 194-227 (240)
72 PF14326 DUF4384: Domain of un 28.0 2.1E+02 0.0045 19.9 6.6 14 59-72 2-15 (83)
73 PF15436 PGBA_N: Plasminogen-b 27.9 42 0.00092 28.6 2.0 74 59-132 79-176 (218)
74 MTH00008 COX2 cytochrome c oxi 26.9 91 0.002 26.4 3.9 30 101-132 183-215 (228)
75 PF00686 CBM_20: Starch bindin 26.7 77 0.0017 22.5 3.0 44 28-71 16-67 (96)
76 PF15240 Pro-rich: Proline-ric 26.4 30 0.00065 28.7 0.8 11 9-19 1-11 (179)
77 PF01345 DUF11: Domain of unkn 26.2 54 0.0012 22.2 2.0 23 49-71 26-48 (76)
78 PF07010 Endomucin: Endomucin; 25.9 82 0.0018 27.5 3.4 27 150-176 185-211 (259)
79 PTZ00213 asparagine synthetase 25.5 1.1E+02 0.0025 27.9 4.3 30 27-58 196-228 (348)
80 TIGR01433 CyoA cytochrome o ub 24.9 4.2E+02 0.0091 22.3 9.5 67 59-132 142-214 (226)
81 MTH00076 COX2 cytochrome c oxi 24.8 1E+02 0.0022 26.1 3.7 30 101-132 183-215 (228)
82 PF02157 Man-6-P_recep: Mannos 24.6 25 0.00054 31.1 0.0 35 29-70 211-245 (278)
83 MTH00051 COX2 cytochrome c oxi 24.2 1E+02 0.0022 26.2 3.6 30 101-132 187-219 (234)
84 PLN02792 oxidoreductase 23.2 1.6E+02 0.0035 28.1 5.2 41 96-136 467-509 (536)
85 TIGR02609 doc_partner putative 22.8 73 0.0016 22.1 2.1 39 30-77 3-41 (74)
86 PRK05425 asparagine synthetase 22.4 1.6E+02 0.0035 26.7 4.7 45 27-78 195-242 (327)
87 PF02362 B3: B3 DNA binding do 21.8 43 0.00093 23.4 0.8 17 56-72 70-86 (100)
88 PF12791 RsgI_N: Anti-sigma fa 21.7 2.3E+02 0.005 18.1 4.4 35 97-132 4-38 (56)
89 PF09792 But2: Ubiquitin 3 bin 21.4 1.3E+02 0.0029 23.7 3.6 32 101-135 100-131 (143)
90 PF03929 PepSY_TM: PepSY-assoc 20.6 85 0.0018 18.1 1.7 16 163-178 12-27 (27)
91 PF02933 CDC48_2: Cell divisio 20.3 77 0.0017 21.0 1.8 18 56-73 15-32 (64)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=280.42 Aligned_cols=108 Identities=32% Similarity=0.645 Sum_probs=99.3
Q ss_pred ccceeeEEEEEcCCCCCCCCCCCCccccccccccccceeeCCEEEEEEeC--CcEEEECcccccccCCCCCceeccCCce
Q 037351 23 IRTVTSTEFEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKK--DSVMAVTEVEYKKCRSSHPLFYSNNGNT 100 (178)
Q Consensus 23 ~~~~~a~~~~VGg~~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~ 100 (178)
...+.+++|+|||+.||+.+ .+|++|+++|+|+|||+|+|+|++ |||+||++++|++|+.++|+..+++|++
T Consensus 15 ~~~~~a~~~~VGd~~GW~~~------~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d 88 (167)
T PLN03148 15 ASATTATDHIVGANKGWNPG------INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKD 88 (167)
T ss_pred hhhccceEEEeCCCCCcCCC------CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCc
Confidence 56788999999999999943 579999999999999999999985 9999999999999999999999999999
Q ss_pred EEEecccceEEEEeCCCCCCCCCCeEEEEEecCCCCC
Q 037351 101 VYKLAKPGLFYFISGVSGHCERGLKMIIKVLETPSPF 137 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~~p 137 (178)
.|+|+++|+|||||+ .+||++|||+.|+|.+.++||
T Consensus 89 ~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~~pp 124 (167)
T PLN03148 89 FIPLNKAKRYYFICG-NGQCFNGMKVTILVHPLPPPP 124 (167)
T ss_pred EEEecCCccEEEEcC-CCccccCCEEEEEEcCCCCCC
Confidence 999999999999999 699999999999997654333
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.1e-31 Score=195.22 Aligned_cols=83 Identities=45% Similarity=0.956 Sum_probs=67.6
Q ss_pred CCCCCCCCccccccccccccceeeCCEEEEEEeC--CcEEEECcccccccCCCCCceeccCCceEEEecccceEEEEeCC
Q 037351 39 WHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKK--DSVMAVTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGV 116 (178)
Q Consensus 39 W~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv 116 (178)
|++++. ..+|++||++++|+|||+|+|+|++ |+|+||++++|++|+.++|+..+++|++.|+|+++|++||||++
T Consensus 1 W~~~~~---~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~ 77 (85)
T PF02298_consen 1 WTIPTN---ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGV 77 (85)
T ss_dssp SSSSSS---TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--S
T ss_pred CccCCC---ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCC
Confidence 887742 2799999999999999999999996 99999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 037351 117 SGHCERGL 124 (178)
Q Consensus 117 ~gHC~~Gm 124 (178)
++||+.||
T Consensus 78 ~~HC~~Gq 85 (85)
T PF02298_consen 78 PGHCQKGQ 85 (85)
T ss_dssp TTTTTTT-
T ss_pred CCcccccC
Confidence 99999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.69 E-value=3.3e-07 Score=69.97 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=47.1
Q ss_pred cccceeeCCEEEEEEeC---CcEEEECcccccccCCCCCceeccCC-ceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 56 SNHRFKIGDTLQFKYKK---DSVMAVTEVEYKKCRSSHPLFYSNNG-NTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G-~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
+..++++||+|.|.... |++.-- . .+....++ . ....| ...++++++|+|-|+|. .|=+.|||..|+|.
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~-~--~~~~~~~~-~-~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFD-G--AKELSHKD-L-AFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEec-C--Cccccccc-c-ccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 45689999999998643 787531 1 11111111 1 11234 34788899999999999 79999999999983
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.35 E-value=3.8e-06 Score=61.77 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=51.4
Q ss_pred cccceeeCCEEEEEEeC---CcEEEECcc--cccccCCCCC---ceeccCCce-EEEecccceEEEEeCCCCCCCCCCeE
Q 037351 56 SNHRFKIGDTLQFKYKK---DSVMAVTEV--EYKKCRSSHP---LFYSNNGNT-VYKLAKPGLFYFISGVSGHCERGLKM 126 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~---hsV~~V~~~--~Y~~C~~s~p---i~~~~~G~~-~v~L~~~G~~YFiCsv~gHC~~GmKl 126 (178)
+..++++||++.|.... |++...+.. .-..+....+ ......|.+ .++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 45689999999999952 899887521 0111221111 112234443 788889999999999 8 99999999
Q ss_pred EEEEe
Q 037351 127 IIKVL 131 (178)
Q Consensus 127 ~I~V~ 131 (178)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.22 E-value=1e-05 Score=59.63 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=47.8
Q ss_pred cccceeeCCEEEEEEeC---CcEEEECccccc------ccCCCCCceeccCCc-eEEEecccceEEEEeCCCCCCCCCCe
Q 037351 56 SNHRFKIGDTLQFKYKK---DSVMAVTEVEYK------KCRSSHPLFYSNNGN-TVYKLAKPGLFYFISGVSGHCERGLK 125 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~---hsV~~V~~~~Y~------~C~~s~pi~~~~~G~-~~v~L~~~G~~YFiCsv~gHC~~GmK 125 (178)
+..++++||+++|.... |+++..+.. .. ......-......|. ..++++.+|+|.|+|. +|++.||+
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~ 93 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV 93 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence 45689999999999653 777643211 00 011100001112243 3788889999999999 89999999
Q ss_pred EEEEEe
Q 037351 126 MIIKVL 131 (178)
Q Consensus 126 l~I~V~ 131 (178)
..|.|.
T Consensus 94 G~I~V~ 99 (99)
T TIGR02656 94 GKITVE 99 (99)
T ss_pred EEEEEC
Confidence 999883
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.16 E-value=1.5e-05 Score=61.25 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=58.9
Q ss_pred eeEEEEEc--CC-CCCCCCCCCCccccccccccccceeeCCEEEEEEeC----CcEEEECcccccccCCCCCceeccCC-
Q 037351 27 TSTEFEVG--GD-NGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKK----DSVMAVTEVEYKKCRSSHPLFYSNNG- 98 (178)
Q Consensus 27 ~a~~~~VG--g~-~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~----hsV~~V~~~~Y~~C~~s~pi~~~~~G- 98 (178)
...+..|| ++ .+..+.| +..++++||+|.|.++. |+|.-.+...|+. ... ....|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P------------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~-~~~~G~ 84 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP------------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SER-VSEEGT 84 (115)
T ss_pred ceEEEEecccCCCCceeEeC------------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----ccc-ccCCCC
Confidence 44667788 32 2466654 35689999999999853 8886433333441 111 12234
Q ss_pred ceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 99 NTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 99 ~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
...++++++|.|-|+|.. |=..|||..|.|.
T Consensus 85 t~s~Tf~~~G~Y~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 85 TYEHTFEEPGIYLYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEEEecCCcEEEEEccC--CCCCCCEEEEEEC
Confidence 458999999999999994 8777999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.01 E-value=5.2e-05 Score=59.42 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=56.4
Q ss_pred EEcCCCCCCCCCCCCccccccccccccceeeCCEEEEEEeC---CcEEEECcccccccCCCCCceeccCC---ceEEEec
Q 037351 32 EVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKK---DSVMAVTEVEYKKCRSSHPLFYSNNG---NTVYKLA 105 (178)
Q Consensus 32 ~VGg~~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~ 105 (178)
++++...-.+.| +..++++||++.|.+.. |||.-.... +.- .......+ ..+.+++
T Consensus 42 ~~~~~~~~vF~P------------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~~-g~~~~~~~~~~s~~~Tfe 103 (128)
T COG3794 42 KGVDIGAMVFEP------------AEVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DPE-GSGTLKAGINESFTHTFE 103 (128)
T ss_pred eeccCcceeEcC------------cEEEECCCCEEEEEECCCCCceEEEeCCC-----Ccc-cccccccCCCcceEEEec
Confidence 344444666665 46689999999999974 999876443 110 11111112 3478899
Q ss_pred ccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 106 KPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 106 ~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
++|.|.|+|.- |=..|||.+|.|.
T Consensus 104 ~~G~Y~Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 104 TPGEYTYYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred ccceEEEEecc--CCCCCcEEEEEeC
Confidence 99999999995 8889999999986
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.95 E-value=4.7e-05 Score=58.49 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=51.0
Q ss_pred cccceeeCCEEEEEEeC--CcEEEECcccccccCCCCCceeccCCceEEEecccceEEEEeCCCCCCCCCCeEEEEEecC
Q 037351 56 SNHRFKIGDTLQFKYKK--DSVMAVTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVLET 133 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~~ 133 (178)
+..++++||+|+|.+.. |+|.......-+ ..++.....+....++++++|.|-|.|. .|=..||+..|+|..+
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~---g~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPE---GAEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcC---CcccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 45689999999999974 887653211100 0111111123335789999999999999 7999999999999863
No 9
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.24 E-value=0.0011 Score=52.74 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=29.0
Q ss_pred ceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 99 NTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 99 ~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
+.+++.+++|+|||.|.+++|=+.||+-.|.|.
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 346778899999999999999999999998873
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.06 E-value=0.0038 Score=44.42 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred ccceeeCCEEEEEEeC---CcEEEECcccccccCCCCCceeccCC-ceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 57 NHRFKIGDTLQFKYKK---DSVMAVTEVEYKKCRSSHPLFYSNNG-NTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 57 ~~tF~VGDtLvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G-~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
..++++||+|.|.... |||.-.+..+ ..=+...+. . ..| ...+++++||+|-|.|...- +||..|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~~-~-~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGPM-M-KKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCCC-ccccccccc-c-CCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4589999999998873 8887543211 110011111 1 223 34789999999999999843 599999873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.05 E-value=0.003 Score=52.85 Aligned_cols=31 Identities=23% Similarity=0.575 Sum_probs=27.6
Q ss_pred ccceEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 037351 106 KPGLFYFISGVSGHCERGLKMIIKVLETPSP 136 (178)
Q Consensus 106 ~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~~ 136 (178)
.+|.||+.|+++||=+.||-..+.|.+.-.-
T Consensus 161 ~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 161 PAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred CCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 5899999999999999999999999876543
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.91 E-value=0.14 Score=43.97 Aligned_cols=76 Identities=29% Similarity=0.560 Sum_probs=47.1
Q ss_pred ceeeCCEEEEEEeC---C--------cEEEECcccccccCC-CCCceecc----CC--------------ceEEEecccc
Q 037351 59 RFKIGDTLQFKYKK---D--------SVMAVTEVEYKKCRS-SHPLFYSN----NG--------------NTVYKLAKPG 108 (178)
Q Consensus 59 tF~VGDtLvF~y~~---h--------sV~~V~~~~Y~~C~~-s~pi~~~~----~G--------------~~~v~L~~~G 108 (178)
..++||.|-+-=+. + -+++|++++|+.|+. +.+...+. +. ...+.. +||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 46778988775432 1 267899999999996 33332221 01 111233 366
Q ss_pred -eEEEEeCC-----------CCCCCC-CCeEEEEEecCCC
Q 037351 109 -LFYFISGV-----------SGHCER-GLKMIIKVLETPS 135 (178)
Q Consensus 109 -~~YFiCsv-----------~gHC~~-GmKl~I~V~~~~~ 135 (178)
+||||++- ++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 68888752 455664 6999999987544
No 13
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.63 E-value=0.011 Score=47.27 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=44.6
Q ss_pred ceeeCCEEEEEEeC---C----------cEEEECcccccccCCC-CCceec-------cCCceEEEec------------
Q 037351 59 RFKIGDTLQFKYKK---D----------SVMAVTEVEYKKCRSS-HPLFYS-------NNGNTVYKLA------------ 105 (178)
Q Consensus 59 tF~VGDtLvF~y~~---h----------sV~~V~~~~Y~~C~~s-~pi~~~-------~~G~~~v~L~------------ 105 (178)
.+++||.|-+-=+. + .+++|++++|+.|+.. .+...+ ..|..++++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 68889999987652 1 3788999999999963 332222 1234444331
Q ss_pred -ccc-eEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 037351 106 -KPG-LFYFISGV-----------SGHCER-GLKMIIKVL 131 (178)
Q Consensus 106 -~~G-~~YFiCsv-----------~gHC~~-GmKl~I~V~ 131 (178)
+|| .||||++- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 477 68888742 344774 689988874
No 14
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.43 E-value=0.024 Score=47.24 Aligned_cols=31 Identities=23% Similarity=0.631 Sum_probs=27.4
Q ss_pred cccceEEEEeCCCCCCCCCCeEEEEEecCCC
Q 037351 105 AKPGLFYFISGVSGHCERGLKMIIKVLETPS 135 (178)
Q Consensus 105 ~~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~ 135 (178)
.++|.||+.|+++||-+.||=..+.|.+.-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 4799999999999999999999998876544
No 15
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.049 Score=44.19 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=32.7
Q ss_pred ccCCceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 95 SNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 95 ~~~G~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
..+|.-++.++++|.|=|+|.+|||-+.||...|+|.
T Consensus 121 G~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 121 GKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 3455567889999999999999999999999999986
No 16
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.38 E-value=0.12 Score=40.96 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=34.8
Q ss_pred cccceeeCCEEEEEEeC-CcE-EEECcccccccCCCCCceeccCCceEEEecccceEEEEeCCCCCCC
Q 037351 56 SNHRFKIGDTLQFKYKK-DSV-MAVTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCE 121 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~-hsV-~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~ 121 (178)
+..++++||.+.+.+.+ +.+ ..+.-.+|+ .+..+....+..-+++.++||+|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---is~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSIDAYG---ISEVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEECCCC---cceEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 44578999999998865 222 111112232 12112221112225677999999999997 564
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=92.55 E-value=0.26 Score=36.08 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=28.5
Q ss_pred cccceeeCCEEEEEEeC--CcEEEECcccccccCCCCCceeccCCc-eEEE--ecccceEEEEeCCCCCCCCCCeEEEEE
Q 037351 56 SNHRFKIGDTLQFKYKK--DSVMAVTEVEYKKCRSSHPLFYSNNGN-TVYK--LAKPGLFYFISGVSGHCERGLKMIIKV 130 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~-~~v~--L~~~G~~YFiCsv~gHC~~GmKl~I~V 130 (178)
+..+++.|+.+.+.+.+ ....++.-.+. +-......|. .+++ .+++|.|=|+|+++.+ ||..|.|
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~liV 104 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDL------GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTLIV 104 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGG------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-----
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCC------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecccC
Confidence 35589999966666654 22232211110 1101112232 3444 4899999999997653 6766654
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=91.56 E-value=0.22 Score=37.76 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=47.6
Q ss_pred cceeeCCEEEEEEeC-----CcEEE----ECcc-cccc--cCCCCCceeccCCceEEEecc-cceEEEEeCCCCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKK-----DSVMA----VTEV-EYKK--CRSSHPLFYSNNGNTVYKLAK-PGLFYFISGVSGHCERGL 124 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~-----hsV~~----V~~~-~Y~~--C~~s~pi~~~~~G~~~v~L~~-~G~~YFiCsv~gHC~~Gm 124 (178)
.+++.||+|..++.+ +++.- +... ..|. .....++....+-...++++. +|++||-|...+|=..||
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL 107 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGL 107 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcC
Confidence 478999999999975 23321 1111 1111 112223333222334688888 999999999988645899
Q ss_pred eEEEEEecC
Q 037351 125 KMIIKVLET 133 (178)
Q Consensus 125 Kl~I~V~~~ 133 (178)
--.+.|...
T Consensus 108 ~G~~iV~~~ 116 (117)
T PF07732_consen 108 YGAIIVEPP 116 (117)
T ss_dssp EEEEEEE-T
T ss_pred EEEEEEcCC
Confidence 999988754
No 19
>PRK02888 nitrous-oxide reductase; Validated
Probab=90.21 E-value=0.66 Score=45.09 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=42.7
Q ss_pred ccceeeCCEEEEEEeC-C---cEEE-ECcccccccCCCCCceeccCCceEEEecccceEEEEeCC---CCCCCCCCeEEE
Q 037351 57 NHRFKIGDTLQFKYKK-D---SVMA-VTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGV---SGHCERGLKMII 128 (178)
Q Consensus 57 ~~tF~VGDtLvF~y~~-h---sV~~-V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv---~gHC~~GmKl~I 128 (178)
..++++||.+.|..++ + +|.. ..-.+|+- .--+....+...+++.++||.||++|+. .+| .+|+..|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H--~~M~G~~ 630 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---NMEVAPQATASVTFTADKPGVYWYYCTWFCHALH--MEMRGRM 630 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---cEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--ccceEEE
Confidence 4579999999999986 2 2221 01111110 0001111223346778999999999997 234 3799999
Q ss_pred EEec
Q 037351 129 KVLE 132 (178)
Q Consensus 129 ~V~~ 132 (178)
.|.+
T Consensus 631 iVep 634 (635)
T PRK02888 631 LVEP 634 (635)
T ss_pred EEEe
Confidence 8864
No 20
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=87.50 E-value=0.33 Score=36.17 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=13.3
Q ss_pred CcchhhHHHHHHHHHHHHhhhhccceeeEEE
Q 037351 1 MASIFKASLIFIFFFFSLLFLHIRTVTSTEF 31 (178)
Q Consensus 1 Ma~~~~~~~~~~~~~~s~~~~~~~~~~a~~~ 31 (178)
|| ++ .+|||.+++++ +||.++.++|++-
T Consensus 1 Ma-SK-~~llL~l~LA~-lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MA-SK-AFLLLGLLLAA-LLLISSEVAAREL 28 (95)
T ss_pred Cc-hh-HHHHHHHHHHH-HHHHHhhhhhHHh
Confidence 88 33 44444444433 3344555555433
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.18 E-value=1.8 Score=38.09 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=45.2
Q ss_pred cceeeCCEEEEEEeCC-------cEEEECcccccccCCCCCceeccCCc---eEEEecccceEEEEeCC----CCCCCCC
Q 037351 58 HRFKIGDTLQFKYKKD-------SVMAVTEVEYKKCRSSHPLFYSNNGN---TVYKLAKPGLFYFISGV----SGHCERG 123 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~h-------sV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCsv----~gHC~~G 123 (178)
.+++.||+++.++.++ ++..=-.... +.......-..|. ..++++.+|+|||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4789999999888653 2211000000 0001111122332 36778889999999995 4587889
Q ss_pred CeEEEEEecCC
Q 037351 124 LKMIIKVLETP 134 (178)
Q Consensus 124 mKl~I~V~~~~ 134 (178)
|...+.|....
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998643
No 22
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=86.94 E-value=2.9 Score=31.91 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=39.3
Q ss_pred cceeeCCEEEEEEeCCcEEE---ECcccccccCCCCCceeccCCc---eEEEecccceEEEEeCCCCCCCCC---CeEEE
Q 037351 58 HRFKIGDTLQFKYKKDSVMA---VTEVEYKKCRSSHPLFYSNNGN---TVYKLAKPGLFYFISGVSGHCERG---LKMII 128 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCsv~gHC~~G---mKl~I 128 (178)
-.+..|+.+.|+-++.+|.. +.+.+-+ ...-.|. ..++.++||.|++.|+. .|-.| |+..|
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~ip~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~~v 117 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWIPELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPGKV 117 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEETTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EEEE
T ss_pred ecccccceEeEEEEcCCccccccccccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeEEE
Confidence 46788999999998744332 2111110 1111232 35778999999999996 78776 88888
Q ss_pred EEe
Q 037351 129 KVL 131 (178)
Q Consensus 129 ~V~ 131 (178)
.|.
T Consensus 118 ~VV 120 (120)
T PF00116_consen 118 IVV 120 (120)
T ss_dssp EEE
T ss_pred EEC
Confidence 774
No 23
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=86.89 E-value=10 Score=31.47 Aligned_cols=66 Identities=17% Similarity=0.330 Sum_probs=40.6
Q ss_pred ceeeCCEEEEEEeCCcEEE---ECcccccccCCCCCceeccCCc---eEEEecccceEEEEeCCCCCCCCC---CeEEEE
Q 037351 59 RFKIGDTLQFKYKKDSVMA---VTEVEYKKCRSSHPLFYSNNGN---TVYKLAKPGLFYFISGVSGHCERG---LKMIIK 129 (178)
Q Consensus 59 tF~VGDtLvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~ 129 (178)
...+|..++|+-++.+|.. |.+-+- ....--|. ..++.+++|.|+..|+. .|-.| |++.|.
T Consensus 119 ~lp~g~~v~~~ltS~DViHsf~vp~l~~--------k~d~~PG~~~~~~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~ 188 (194)
T MTH00047 119 RLVYGVPYHLLVTSSDVIHSFSVPDLNL--------KMDAIPGRINHLFFCPDRHGVFVGYCSE--LCGVGHSYMPIVIE 188 (194)
T ss_pred EEeCCCEEEeeeecCccccceeccccCc--------eeecCCCceEEEEEEcCCCEEEEEEeeh--hhCcCcccCcEEEE
Confidence 4556777788887655432 111100 01111232 25677899999999995 67654 999999
Q ss_pred EecCC
Q 037351 130 VLETP 134 (178)
Q Consensus 130 V~~~~ 134 (178)
|.++.
T Consensus 189 v~~~~ 193 (194)
T MTH00047 189 VVDVD 193 (194)
T ss_pred EEcCC
Confidence 98654
No 24
>PLN02604 oxidoreductase
Probab=83.88 E-value=7.5 Score=37.05 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=48.9
Q ss_pred ccceeeCCEEEEEEeCC-----------cEEEECcccccccC--CCCCceeccCCceEEEecccceEEEEeCCCCCCCCC
Q 037351 57 NHRFKIGDTLQFKYKKD-----------SVMAVTEVEYKKCR--SSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERG 123 (178)
Q Consensus 57 ~~tF~VGDtLvF~y~~h-----------sV~~V~~~~Y~~C~--~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~G 123 (178)
..+++.||+++.+..++ .+.+.....+|.=. ...++....+-...++++.+|++||=|-...|-..|
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 135 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAG 135 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCC
Confidence 45799999999988642 12221110011100 001233322223467788999999999999999999
Q ss_pred CeEEEEEecCC
Q 037351 124 LKMIIKVLETP 134 (178)
Q Consensus 124 mKl~I~V~~~~ 134 (178)
|.-.|.|....
T Consensus 136 l~G~liV~~~~ 146 (566)
T PLN02604 136 LYGSIRVSLPR 146 (566)
T ss_pred CeEEEEEEecC
Confidence 99999998543
No 25
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.28 E-value=4.7 Score=33.16 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=42.7
Q ss_pred cceeeCCEEEEEEeCCcEEEECcccccccCCCCCce-eccCCc---eEEEecccceEEEEeCC---CCCCCCCCeEEEEE
Q 037351 58 HRFKIGDTLQFKYKKDSVMAVTEVEYKKCRSSHPLF-YSNNGN---TVYKLAKPGLFYFISGV---SGHCERGLKMIIKV 130 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~hsV~~V~~~~Y~~C~~s~pi~-~~~~G~---~~v~L~~~G~~YFiCsv---~gHC~~GmKl~I~V 130 (178)
-.+.+|+.++|+-++.+|..- | +-+.-.++ ..-.|. ..++.+++|.|+..|+. .+| ..|++.|.|
T Consensus 119 l~vp~g~~v~~~~ts~DV~Hs----f--~ip~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 119 LVVPAGTPVRLQVTSKDVIHS----F--WVPELGGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred EEEEcCCEEEEEEEeCchhhc----c--cccccCceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 368899999999887555421 0 00000111 111232 35778999999999997 344 569999998
Q ss_pred ecC
Q 037351 131 LET 133 (178)
Q Consensus 131 ~~~ 133 (178)
.+.
T Consensus 191 ~~~ 193 (201)
T TIGR02866 191 VER 193 (201)
T ss_pred ECH
Confidence 753
No 26
>PLN02354 copper ion binding / oxidoreductase
Probab=82.53 E-value=14 Score=35.24 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=49.1
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccc-----cccCCCCCceeccCCceEEEe-cccceEEEEeCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEY-----KKCRSSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCE 121 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y-----~~C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~ 121 (178)
.+++.||+|+.+..+ |.+.|-..... ..| |+....+=...|++ +.+|++||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 368999999988864 34554322112 234 44443333346776 47899999999888888
Q ss_pred CCCeEEEEEecC
Q 037351 122 RGLKMIIKVLET 133 (178)
Q Consensus 122 ~GmKl~I~V~~~ 133 (178)
.|+...|.|...
T Consensus 136 ~Gl~G~lII~~~ 147 (552)
T PLN02354 136 AGGFGGLRVNSR 147 (552)
T ss_pred CCccceEEEcCC
Confidence 999999999754
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=82.48 E-value=3.7 Score=38.80 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=48.9
Q ss_pred cceeeCCEEEEEEeCC-----------cEEEECcccccc--cCCCCCceeccCCceEEEecccceEEEEeCCCCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKKD-----------SVMAVTEVEYKK--CRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGL 124 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~h-----------sV~~V~~~~Y~~--C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~Gm 124 (178)
.+++.||+|+++..++ .+.+......|. .-..-++....+-...++++.+|++||-|-.+.|-..||
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl 113 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGL 113 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccc
Confidence 4799999999988641 122211100111 001113333222334678899999999999999999999
Q ss_pred eEEEEEecCC
Q 037351 125 KMIIKVLETP 134 (178)
Q Consensus 125 Kl~I~V~~~~ 134 (178)
...|.|....
T Consensus 114 ~G~liV~~~~ 123 (541)
T TIGR03388 114 YGSLIVDVPD 123 (541)
T ss_pred eEEEEEecCC
Confidence 9999998653
No 28
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=80.92 E-value=4.6 Score=39.04 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=49.8
Q ss_pred ceeeCCEEEEEEeC----------CcEEEECcc-----cccccCCCCCceeccCCceEEEe-cccceEEEEeCCCCCCCC
Q 037351 59 RFKIGDTLQFKYKK----------DSVMAVTEV-----EYKKCRSSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCER 122 (178)
Q Consensus 59 tF~VGDtLvF~y~~----------hsV~~V~~~-----~Y~~C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~~ 122 (178)
+++.||+|+.+..+ |.+.|-... .+..| |+....+=...|++ +.+|++||=+..+.+-..
T Consensus 63 ~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~ 138 (596)
T PLN00044 63 NVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAA 138 (596)
T ss_pred EEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhhC
Confidence 68999999998764 345443111 12234 44443333457788 479999999998888889
Q ss_pred CCeEEEEEecCC
Q 037351 123 GLKMIIKVLETP 134 (178)
Q Consensus 123 GmKl~I~V~~~~ 134 (178)
|+...|.|....
T Consensus 139 Gl~GalII~~~~ 150 (596)
T PLN00044 139 GGYGAITINNRD 150 (596)
T ss_pred cCeeEEEEcCcc
Confidence 999999997643
No 29
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.99 E-value=6.1 Score=34.10 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=53.8
Q ss_pred EEcCCCCCCCCCCCCcccccccccccc-ceeeCCEEEEEEeCCcEEE---ECcccccccCCCCCceeccCCceEEEeccc
Q 037351 32 EVGGDNGWHVPNAKEGAQMYNKWASNH-RFKIGDTLQFKYKKDSVMA---VTEVEYKKCRSSHPLFYSNNGNTVYKLAKP 107 (178)
Q Consensus 32 ~VGg~~GW~~~~~~~~~~~Y~~WA~~~-tF~VGDtLvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 107 (178)
++|-.-.|.+.-+ +|.-+..+. .+.+|..++|+-++.+|.. +.+-..+.=... +..-...++.+++
T Consensus 117 v~~~qw~W~f~Yp-----~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP~l~~k~d~iP-----G~~~~~~~~~~~~ 186 (247)
T COG1622 117 VTAYQWKWLFIYP-----DYGIATVNELVLPVGRPVRFKLTSADVIHSFWIPQLGGKIDAIP-----GMTTELWLTANKP 186 (247)
T ss_pred EEEEEEEEEEEcc-----CcCccccceEEEeCCCeEEEEEEechhceeEEecCCCceeeecC-----CceEEEEEecCCC
Confidence 3443446765311 233344443 7889999999998744432 211111111111 1112235778999
Q ss_pred ceEEEEeCCCCCCCC---CCeEEEEEecCCC
Q 037351 108 GLFYFISGVSGHCER---GLKMIIKVLETPS 135 (178)
Q Consensus 108 G~~YFiCsv~gHC~~---GmKl~I~V~~~~~ 135 (178)
|.|+.+|+. .|-. .|+++|.|.+...
T Consensus 187 G~Y~g~Cae--~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 187 GTYRGICAE--YCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred eEEEEEcHh--hcCCCcccceEEEEEEcHHH
Confidence 999999986 6665 4999999987643
No 30
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=76.29 E-value=3 Score=32.73 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=21.9
Q ss_pred eEEEec----ccce-EEEEeCCCCCCCCCCeEEEE
Q 037351 100 TVYKLA----KPGL-FYFISGVSGHCERGLKMIIK 129 (178)
Q Consensus 100 ~~v~L~----~~G~-~YFiCsv~gHC~~GmKl~I~ 129 (178)
++|+++ ++|. |=|+|++|||=. .||..++
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 356654 4674 999999999986 6887764
No 31
>PLN02835 oxidoreductase
Probab=74.95 E-value=13 Score=35.41 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=49.1
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccccc-cCCCCCceeccCCceEEEe-cccceEEEEeCCCCCCCCCCe
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEYKK-CRSSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCERGLK 125 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~~GmK 125 (178)
.+++.||+|+.+..+ |.+.|-.....|. -...-|+....+=...|++ +.+|+|||=+-...+-..|+.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Confidence 479999999998864 3344432211221 0011244443333446766 579999999988888888999
Q ss_pred EEEEEecC
Q 037351 126 MIIKVLET 133 (178)
Q Consensus 126 l~I~V~~~ 133 (178)
-.+.|...
T Consensus 142 G~lIV~~~ 149 (539)
T PLN02835 142 GAINVYER 149 (539)
T ss_pred ceeEEeCC
Confidence 99999643
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=73.50 E-value=12 Score=35.63 Aligned_cols=77 Identities=8% Similarity=0.121 Sum_probs=49.7
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccccc-cCCCCCceeccCCceEEEec-ccceEEEEeCCCCCCCCCCe
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEYKK-CRSSHPLFYSNNGNTVYKLA-KPGLFYFISGVSGHCERGLK 125 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L~-~~G~~YFiCsv~gHC~~GmK 125 (178)
.+++.||+|+.+..+ |.+.|-.....|. -...-|+....+-...++++ .+|++||=+-...+=..|+.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 479999999999874 3344432211222 01112454433334577874 79999999987777678999
Q ss_pred EEEEEecCC
Q 037351 126 MIIKVLETP 134 (178)
Q Consensus 126 l~I~V~~~~ 134 (178)
..+.|....
T Consensus 139 G~lII~~~~ 147 (545)
T PLN02168 139 GAIRIYNPE 147 (545)
T ss_pred eEEEEcCCc
Confidence 999997644
No 33
>PLN02191 L-ascorbate oxidase
Probab=72.63 E-value=10 Score=36.32 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=48.3
Q ss_pred cceeeCCEEEEEEeCC-----------cEEEECcccccc-cC-CCCCceeccCCceEEEecccceEEEEeCCCCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKKD-----------SVMAVTEVEYKK-CR-SSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGL 124 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~h-----------sV~~V~~~~Y~~-C~-~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~Gm 124 (178)
.+++.||+|+.+..++ .+.+-...-+|. -. ..-|+....+-...++++.+|+|||=|-...+-..||
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl 135 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGL 135 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCC
Confidence 3789999999887641 222221111121 00 0113333333334688889999999999988889999
Q ss_pred eEEEEEecC
Q 037351 125 KMIIKVLET 133 (178)
Q Consensus 125 Kl~I~V~~~ 133 (178)
...|.|...
T Consensus 136 ~G~liV~~~ 144 (574)
T PLN02191 136 YGSLIVDVA 144 (574)
T ss_pred EEEEEEccC
Confidence 999999743
No 34
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=71.15 E-value=30 Score=31.76 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=36.9
Q ss_pred ccceeeCCEEEEEEeC-C-cEEEECccccccc---CCCCCceeccCCceEEEecccceEEEEeCCCCCCCCCCeEEEEEe
Q 037351 57 NHRFKIGDTLQFKYKK-D-SVMAVTEVEYKKC---RSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVL 131 (178)
Q Consensus 57 ~~tF~VGDtLvF~y~~-h-sV~~V~~~~Y~~C---~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~ 131 (178)
..++..|+ ++|.-.+ + .+.++ +-++.= .-...+....++..+++| +||+|-|+|+. | ..|+-.|+|.
T Consensus 45 ~~tVpAG~-~~f~V~N~~~~~~Ef--e~~~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vt 116 (375)
T PRK10378 45 TLTVNAGK-TQFIIQNHSQKALEW--EILKGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCGL--L--TNPKGKLIVK 116 (375)
T ss_pred ceeeCCCC-EEEEEEeCCCCcceE--EeeccccccccccccCCCCceEEEEec-CCceEEeecCc--C--CCCCceEEEe
Confidence 45889997 5565433 2 23322 111100 001233333344445666 69999999976 4 3357778886
Q ss_pred c
Q 037351 132 E 132 (178)
Q Consensus 132 ~ 132 (178)
.
T Consensus 117 g 117 (375)
T PRK10378 117 G 117 (375)
T ss_pred C
Confidence 4
No 35
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=71.12 E-value=1.9 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.645 Sum_probs=13.9
Q ss_pred ccccccccceeeCCEEEEEEeCCcEEE
Q 037351 51 YNKWASNHRFKIGDTLQFKYKKDSVMA 77 (178)
Q Consensus 51 Y~~WA~~~tF~VGDtLvF~y~~hsV~~ 77 (178)
|.+|..+++...||.+.|+ +.+.+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~---g~~y~ 24 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN---GKLYQ 24 (41)
T ss_dssp --B--TTCEE-TT-EEEET---TEEEE
T ss_pred CCCcCCCCEEcCCCEEEEC---CCEEE
Confidence 5789999999999999875 44444
No 36
>PLN02792 oxidoreductase
Probab=68.55 E-value=17 Score=34.59 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=47.5
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECc---cc--ccccCCCCCceeccCCceEEEe-cccceEEEEeCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTE---VE--YKKCRSSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCE 121 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~---~~--Y~~C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~ 121 (178)
.+++.||+|+.+..+ |.+.|-.. ++ ...| |+....+=...|++ +.+|+|||=+-...+-.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqc----PI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~ 124 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTC----PIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKA 124 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcC----ccCCCCcEEEEEEeCCCccceEEecCcchhhh
Confidence 379999999999864 34444321 11 2224 45443333446777 47999999998887777
Q ss_pred CCCeEEEEEec
Q 037351 122 RGLKMIIKVLE 132 (178)
Q Consensus 122 ~GmKl~I~V~~ 132 (178)
.|+...+.|..
T Consensus 125 ~Gl~G~liI~~ 135 (536)
T PLN02792 125 AGGYGSLRIYS 135 (536)
T ss_pred cccccceEEeC
Confidence 88888887765
No 37
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=62.41 E-value=26 Score=33.08 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=46.1
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccccc--cCCCCCceeccCCceEEEe-cccceEEEEeCCCCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEYKK--CRSSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCERGL 124 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y~~--C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~~Gm 124 (178)
.+++.||+|+.+..+ |.+.|......|. .-..-|+....+-...+++ +.+|++||=|-... ...||
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~Gl 114 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRATV 114 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhccc
Confidence 479999999998864 2333331111121 0111133333333346776 48899999999854 45699
Q ss_pred eEEEEEecCC
Q 037351 125 KMIIKVLETP 134 (178)
Q Consensus 125 Kl~I~V~~~~ 134 (178)
...|.|....
T Consensus 115 ~G~lIV~~~~ 124 (539)
T TIGR03389 115 YGAIVILPKP 124 (539)
T ss_pred eEEEEEcCCC
Confidence 9999998544
No 38
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=62.40 E-value=5.7 Score=26.06 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHhhcccC
Q 037351 159 AIASLTIMLLIMSFSGLLLY 178 (178)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ 178 (178)
.+=|..|+|.||...||+.|
T Consensus 7 ~iFsvvIil~If~~iGl~Iy 26 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIY 26 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999986
No 39
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=59.66 E-value=23 Score=34.15 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=46.3
Q ss_pred cceeeCCEEEEEEeCC-----cEE----EECcccccc-cCCC-CCceeccCCceEEEecccceEEEEeCCCCCCCCCCeE
Q 037351 58 HRFKIGDTLQFKYKKD-----SVM----AVTEVEYKK-CRSS-HPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERGLKM 126 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~h-----sV~----~V~~~~Y~~-C~~s-~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~GmKl 126 (178)
.+++.||.++.++.++ ++. .+.. ..|. ...+ .++....+-...|++..+|+|||-|-...+=+.|+..
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G 156 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYG 156 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceE
Confidence 4689999999988751 221 1110 1111 1111 1333332233467888999999999887777789998
Q ss_pred EEEEecC
Q 037351 127 IIKVLET 133 (178)
Q Consensus 127 ~I~V~~~ 133 (178)
.|.|...
T Consensus 157 ~lIV~~~ 163 (587)
T TIGR01480 157 PLIIDPA 163 (587)
T ss_pred EEEECCC
Confidence 8988643
No 40
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=58.68 E-value=42 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.0
Q ss_pred ccceeeCCEEEEEEeC
Q 037351 57 NHRFKIGDTLQFKYKK 72 (178)
Q Consensus 57 ~~tF~VGDtLvF~y~~ 72 (178)
...++.||.++|+.+.
T Consensus 58 ~~~~~~GDIVvf~~~~ 73 (158)
T TIGR02228 58 PNDIQVGDVITYKSPG 73 (158)
T ss_pred cCCCCCCCEEEEEECC
Confidence 4578999999999764
No 41
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=58.45 E-value=23 Score=34.21 Aligned_cols=87 Identities=11% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCCCCCCCccccccccccccceeeCCEEEEEEeC-----Cc------EEEECccc--ccccCCCCCceeccCCceEEEe
Q 037351 38 GWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKK-----DS------VMAVTEVE--YKKCRSSHPLFYSNNGNTVYKL 104 (178)
Q Consensus 38 GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~-----hs------V~~V~~~~--Y~~C~~s~pi~~~~~G~~~v~L 104 (178)
-|++.- ..|.. ....+++.||.+++.+.+ |. ..++...+ |..=.-+-.+....+-...|..
T Consensus 487 ~wtiNG-----~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 487 AWSFDG-----EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVRKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEEECC-----ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccccCCceeeCCCCEEEEEEEC
Confidence 388752 22333 234689999999999974 32 23442211 1110000111111111235677
Q ss_pred cccceEEEEeCCCCCCCCCCeEEEEE
Q 037351 105 AKPGLFYFISGVSGHCERGLKMIIKV 130 (178)
Q Consensus 105 ~~~G~~YFiCsv~gHC~~GmKl~I~V 130 (178)
+.||+++|=|-+..|=+.||--.+.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 89999999999999999999887776
No 42
>PLN02991 oxidoreductase
Probab=57.64 E-value=38 Score=32.36 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=47.8
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccccccC-CCCCceeccCCceEEEe-cccceEEEEeCCCCCCCCCCe
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEYKKCR-SSHPLFYSNNGNTVYKL-AKPGLFYFISGVSGHCERGLK 125 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y~~C~-~s~pi~~~~~G~~~v~L-~~~G~~YFiCsv~gHC~~GmK 125 (178)
.+++.||+|+.+..+ |.+.|......|.=. ..-|+....+=...+++ +.+|+|||=+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 378999999988864 334443111122100 11244443333456777 479999999988777667888
Q ss_pred EEEEEecC
Q 037351 126 MIIKVLET 133 (178)
Q Consensus 126 l~I~V~~~ 133 (178)
-.+.|...
T Consensus 141 G~lIV~~~ 148 (543)
T PLN02991 141 GAIRISSR 148 (543)
T ss_pred eeEEEeCC
Confidence 88888754
No 43
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=57.56 E-value=1.1e+02 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.557 Sum_probs=23.9
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.+++|.||..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5678999999999986 55554 888888774
No 44
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=56.28 E-value=1.2e+02 Score=28.43 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHHHHHhhhhccceeeEEEEEcCCCCCC
Q 037351 2 ASIFKASLIFIFFFFSLLFLHIRTVTSTEFEVGGDNGWH 40 (178)
Q Consensus 2 a~~~~~~~~~~~~~~s~~~~~~~~~~a~~~~VGg~~GW~ 40 (178)
-..++.+++|+|++.+ +.+.+..+....|.||+..|=.
T Consensus 2 ~~~~~~~~~l~l~~~~-~~~~~~~~~~~~~~vg~~~~~~ 39 (421)
T PRK09723 2 KKFFRYFLFLALCLSC-YTASAGTDDNVSYIVGNYYGVG 39 (421)
T ss_pred hhHHHHHHHHHHHHhh-hhhhccccCceEEEEccccccC
Confidence 3445555555544422 2223344568899999865543
No 45
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=50.40 E-value=33 Score=25.46 Aligned_cols=75 Identities=15% Similarity=0.263 Sum_probs=47.2
Q ss_pred cceeeCCEEEEEEeC-----C---------cEEEECccccc-------ccC---CCCCceeccCCce--EEEecccceEE
Q 037351 58 HRFKIGDTLQFKYKK-----D---------SVMAVTEVEYK-------KCR---SSHPLFYSNNGNT--VYKLAKPGLFY 111 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~-----h---------sV~~V~~~~Y~-------~C~---~s~pi~~~~~G~~--~v~L~~~G~~Y 111 (178)
.+.+.||.+++...+ | .|+..+...+. .+. ..+.+.....|.. .+..+.||.+.
T Consensus 36 ~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~ 115 (138)
T PF07731_consen 36 IEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWL 115 (138)
T ss_dssp EEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEE
T ss_pred EEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEE
Confidence 378999999887763 2 13333333321 122 1222222233333 45678999999
Q ss_pred EEeCCCCCCCCCCeEEEEEec
Q 037351 112 FISGVSGHCERGLKMIIKVLE 132 (178)
Q Consensus 112 FiCsv~gHC~~GmKl~I~V~~ 132 (178)
|=|-+-.|=..||...+.|.+
T Consensus 116 ~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 116 FHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEESSHHHHHTT-EEEEEECH
T ss_pred EEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999874
No 46
>PF12292 DUF3624: Protein of unknown function (DUF3624); InterPro: IPR022072 This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length. There is a conserved GRC sequence motif.
Probab=48.15 E-value=14 Score=26.69 Aligned_cols=24 Identities=33% Similarity=0.778 Sum_probs=20.9
Q ss_pred ccchhhhHHHHHHHHHHHHhhccc
Q 037351 154 IERPAAIASLTIMLLIMSFSGLLL 177 (178)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~ 177 (178)
-+.|..|.|+.+..+-++|+|||+
T Consensus 41 ~d~P~sieSIALl~~~~AfsgLL~ 64 (77)
T PF12292_consen 41 RDTPTSIESIALLFFCFAFSGLLF 64 (77)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999985
No 47
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=46.98 E-value=11 Score=28.75 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=11.9
Q ss_pred cceeeCCEEEEEEe
Q 037351 58 HRFKIGDTLQFKYK 71 (178)
Q Consensus 58 ~tF~VGDtLvF~y~ 71 (178)
+.|++||.|+|+=.
T Consensus 30 ~~ikvGD~I~f~~~ 43 (109)
T cd06555 30 QQIKVGDKILFNDL 43 (109)
T ss_pred hcCCCCCEEEEEEc
Confidence 58999999999654
No 48
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.41 E-value=12 Score=34.06 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=13.3
Q ss_pred ceeeCCEEEEEEeCC
Q 037351 59 RFKIGDTLQFKYKKD 73 (178)
Q Consensus 59 tF~VGDtLvF~y~~h 73 (178)
..+.||+|+|+|..|
T Consensus 134 ~aq~gD~LvfHYSGH 148 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSGH 148 (362)
T ss_pred cCCCCCEEEEEecCC
Confidence 478999999999976
No 49
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.27 E-value=37 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.549 Sum_probs=24.6
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.++||.||..|+. -|-.| |++.|.|.+
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 5678899999999996 67665 999988875
No 50
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=43.02 E-value=16 Score=26.06 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=11.1
Q ss_pred ccceeeCCEEEEE
Q 037351 57 NHRFKIGDTLQFK 69 (178)
Q Consensus 57 ~~tF~VGDtLvF~ 69 (178)
.+.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 4589999999886
No 51
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.27 E-value=2.3e+02 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.489 Sum_probs=23.9
Q ss_pred EEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
.++.+++|.||-.|+. -|-. .|.+.|.|.+
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVS 249 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEEC
Confidence 5678899999999985 5554 4999988865
No 52
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=40.42 E-value=21 Score=22.51 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=25.6
Q ss_pred EEcCCCCCCCCCCCCccccccccccccceeeCCEEEEEEeCC
Q 037351 32 EVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKKD 73 (178)
Q Consensus 32 ~VGg~~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~h 73 (178)
+||.+.+=++| .+|.....++.||.|.+.+..+
T Consensus 2 kvg~s~~v~iP---------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP---------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE----------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC---------HHHHHHcCCCCCCEEEEEEeCC
Confidence 46666666766 5677777899999999999876
No 53
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=38.01 E-value=27 Score=25.14 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=19.7
Q ss_pred cceeeCCEEEEEEeC-C--cEEEECcccc
Q 037351 58 HRFKIGDTLQFKYKK-D--SVMAVTEVEY 83 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~-h--sV~~V~~~~Y 83 (178)
+++++||++-.-|.+ | +|..+.+++.
T Consensus 4 ~~~~~GD~VyViYrNPHt~~VanIqeAei 32 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPHTQDVANIQEAEI 32 (75)
T ss_pred cccCCCCEEEEEEcCCCCccccccchhhe
Confidence 689999999888875 6 6777666543
No 54
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.03 E-value=1.5e+02 Score=28.72 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=52.0
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccc-cccCC-CC-CceeccCCceEEEec-ccceEEEEeCCCCCCCCC
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEY-KKCRS-SH-PLFYSNNGNTVYKLA-KPGLFYFISGVSGHCERG 123 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y-~~C~~-s~-pi~~~~~G~~~v~L~-~~G~~YFiCsv~gHC~~G 123 (178)
.....||+|+-+..+ |.|.|- +..| |. .. +. |++...+=...++++ +.|++|+.....-|-..|
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G 138 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATG 138 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccC
Confidence 468999999888764 334442 2222 11 10 11 444333333467777 789999999999999999
Q ss_pred CeEEEEEecCCCCC
Q 037351 124 LKMIIKVLETPSPF 137 (178)
Q Consensus 124 mKl~I~V~~~~~~p 137 (178)
+...+.|.+...-|
T Consensus 139 ~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 139 VFGALIINPRPGLP 152 (563)
T ss_pred ceeEEEEcCCccCC
Confidence 99999998776543
No 55
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=35.46 E-value=23 Score=21.49 Aligned_cols=19 Identities=16% Similarity=0.585 Sum_probs=14.5
Q ss_pred ccccccccceeeCCEEEEE
Q 037351 51 YNKWASNHRFKIGDTLQFK 69 (178)
Q Consensus 51 Y~~WA~~~tF~VGDtLvF~ 69 (178)
|..|..++.-..||.+.++
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~~ 19 (41)
T smart00495 1 APAWQAGTVYTAGDVVSYN 19 (41)
T ss_pred CCccCCCCcCcCCCEEEEC
Confidence 4678888877789988664
No 56
>PRK10883 FtsI repressor; Provisional
Probab=34.77 E-value=1.2e+02 Score=28.27 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=42.4
Q ss_pred cceeeCCEEEEEEeC----------CcEEEECcccccccCCCCCceeccCCceEEEec-ccceEEEEeCCCC----CCCC
Q 037351 58 HRFKIGDTLQFKYKK----------DSVMAVTEVEYKKCRSSHPLFYSNNGNTVYKLA-KPGLFYFISGVSG----HCER 122 (178)
Q Consensus 58 ~tF~VGDtLvF~y~~----------hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~-~~G~~YFiCsv~g----HC~~ 122 (178)
.+++.||.|+.++.+ |.+. +..+..+. ...++....+-...++.+ .+|+|||=+-..+ +-..
T Consensus 79 ir~~~Gd~v~v~v~N~L~~~ttiHwHGl~-~~~~~~~g--~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~ 155 (471)
T PRK10883 79 IRVWKGDDVKLIYSNRLTEPVSMTVSGLQ-VPGPLMGG--PARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYN 155 (471)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeECCcc-CCCCCCCC--ccccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhc
Confidence 478999999999975 2222 22111111 112333222112245455 4899999776433 4457
Q ss_pred CCeEEEEEecCCC
Q 037351 123 GLKMIIKVLETPS 135 (178)
Q Consensus 123 GmKl~I~V~~~~~ 135 (178)
|+.-.+.|.....
T Consensus 156 GL~G~lII~d~~~ 168 (471)
T PRK10883 156 GLAGMWLVEDEVS 168 (471)
T ss_pred CCeEEEEEeCCcc
Confidence 9999998876543
No 57
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.37 E-value=62 Score=26.46 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=22.9
Q ss_pred EEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
.+..+++|.||..|+. -|-. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999986 4543 4888888764
No 58
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.19 E-value=60 Score=27.33 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=24.3
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEecC
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLET 133 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~~ 133 (178)
.++.+++|.+|..|+. -|-.| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677899999999986 56654 8888887753
No 59
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.80 E-value=56 Score=27.69 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=23.6
Q ss_pred EEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
.+..+++|.||..|+. -|-. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 4677899999999986 5554 4888888774
No 60
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=33.56 E-value=1.1e+02 Score=29.48 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=11.1
Q ss_pred eEEEEeCCCCCCCCCC
Q 037351 109 LFYFISGVSGHCERGL 124 (178)
Q Consensus 109 ~~YFiCsv~gHC~~Gm 124 (178)
+.||-|=-++-|+...
T Consensus 114 t~~~CcCs~~~CN~n~ 129 (534)
T KOG3653|consen 114 TLYFCCCSTDFCNANF 129 (534)
T ss_pred eEEEEecCCCcccCCc
Confidence 3666666689999843
No 61
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.01 E-value=65 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.523 Sum_probs=23.9
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.++||.||-.|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5678999999999996 56554 888888764
No 62
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=32.76 E-value=82 Score=18.51 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=21.7
Q ss_pred eEEEecccceEEEEeCCCCCCCCCCe
Q 037351 100 TVYKLAKPGLFYFISGVSGHCERGLK 125 (178)
Q Consensus 100 ~~v~L~~~G~~YFiCsv~gHC~~GmK 125 (178)
..+.+++.|.-||=.++...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35677888999999999999999874
No 63
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.44 E-value=1.2e+02 Score=29.40 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=35.0
Q ss_pred cCCce--EEEecccceEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 037351 96 NNGNT--VYKLAKPGLFYFISGVSGHCERGLKMIIKVLETPSP 136 (178)
Q Consensus 96 ~~G~~--~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~~ 136 (178)
..|-. .+.+|.||...+=|-+-.|=..||++...|.+...+
T Consensus 499 pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 499 PGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred CCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 34444 467899999999999999999999999999988776
No 64
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.35 E-value=65 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.512 Sum_probs=23.5
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.++||.+|..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5678999999999986 55544 888888764
No 65
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.75 E-value=3.1e+02 Score=22.97 Aligned_cols=30 Identities=17% Similarity=0.551 Sum_probs=24.2
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.+++|.||..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 5678999999999986 66654 888888874
No 66
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=30.93 E-value=3.1e+02 Score=22.73 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=40.6
Q ss_pred ceeeCCEEEEEEeCCcEEE---ECcccccccCCCCCceeccCCceEEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 59 RFKIGDTLQFKYKKDSVMA---VTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 59 tF~VGDtLvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
..-+|-.+.|+-++.+|.. |.+-.- ..+. + .+..-...++.+++|.|+-.|+. -|-.| |++.|.|.+
T Consensus 133 ~iP~g~~v~~~ltS~DViHsf~vP~l~~-k~da---i-PG~~~~~~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 133 NIPKDRPVLFKLQSADTMTSFWIPQLGG-QKYA---M-TGMTMNWYLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVS 205 (217)
T ss_pred EEECCCEEEEEEECCchhhhhhchhhCc-eeec---C-CCceEEEEEEeCCCEEEEEEehh--hcCccccCCeEEEEEeC
Confidence 5667777788877755532 111000 0111 0 11112236788999999999995 67654 999999875
Q ss_pred C
Q 037351 133 T 133 (178)
Q Consensus 133 ~ 133 (178)
.
T Consensus 206 ~ 206 (217)
T TIGR01432 206 E 206 (217)
T ss_pred H
Confidence 3
No 67
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=30.83 E-value=1.6e+02 Score=27.89 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEEeC-----------CcEEEECcccccc-cCCCC-CceeccCCceEEEec--ccceEEEEeCCCCCCCCC
Q 037351 59 RFKIGDTLQFKYKK-----------DSVMAVTEVEYKK-CRSSH-PLFYSNNGNTVYKLA--KPGLFYFISGVSGHCERG 123 (178)
Q Consensus 59 tF~VGDtLvF~y~~-----------hsV~~V~~~~Y~~-C~~s~-pi~~~~~G~~~v~L~--~~G~~YFiCsv~gHC~~G 123 (178)
+++.||+|+.+..+ |.+.+-.....|. ...+. |+....+-...++++ .+|+|||=|-...+ ..|
T Consensus 42 ~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q-~~~ 120 (538)
T TIGR03390 42 RLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQ-AVT 120 (538)
T ss_pred EEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchh-hhc
Q ss_pred CeEEEEEecCCCCC
Q 037351 124 LKMIIKVLETPSPF 137 (178)
Q Consensus 124 mKl~I~V~~~~~~p 137 (178)
|...+.|......+
T Consensus 121 l~G~lIV~~~~~~~ 134 (538)
T TIGR03390 121 AFGPLIVEDCEPPP 134 (538)
T ss_pred ceeEEEEccCCccC
No 68
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.72 E-value=77 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.523 Sum_probs=23.9
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.+++|.||..|+. -|-.| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5677899999999985 56654 888888774
No 69
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=29.35 E-value=2.6e+02 Score=21.98 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred ceeeCCEEEEEEeC------CcEEEECcccccccCC--CCCceeccCCceEEEecccceEEEEe
Q 037351 59 RFKIGDTLQFKYKK------DSVMAVTEVEYKKCRS--SHPLFYSNNGNTVYKLAKPGLFYFIS 114 (178)
Q Consensus 59 tF~VGDtLvF~y~~------hsV~~V~~~~Y~~C~~--s~pi~~~~~G~~~v~L~~~G~~YFiC 114 (178)
.+++||.|.|+--- +.-+.+...+...=.. .....+-.+|...|.+.++|.+.+..
T Consensus 146 ~l~~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 146 KLKAGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred cccCCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEE
Confidence 57899999887642 2223332211111000 11122335688889999999987654
No 70
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.21 E-value=99 Score=29.99 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=40.8
Q ss_pred ccccceeeCCEEEEEEeC-C-cEEEECcccccccCCCC----Cc-eeccCCce-EEEecccceEEEEeC
Q 037351 55 ASNHRFKIGDTLQFKYKK-D-SVMAVTEVEYKKCRSSH----PL-FYSNNGNT-VYKLAKPGLFYFISG 115 (178)
Q Consensus 55 A~~~tF~VGDtLvF~y~~-h-sV~~V~~~~Y~~C~~s~----pi-~~~~~G~~-~v~L~~~G~~YFiCs 115 (178)
.++|+|..-|.++|+|++ . .++.+...+.|.-+.+- .+ ....+|++ .|.|.+.|+-|=+|=
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 367899999999999997 3 45555666666655432 11 11234665 789999998766553
No 71
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.62 E-value=82 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.517 Sum_probs=24.6
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEecC
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLET 133 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~~ 133 (178)
.++.++||.||-.|+. .|-.| |.+.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678899999999985 66655 8888887753
No 72
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.05 E-value=2.1e+02 Score=19.85 Aligned_cols=14 Identities=14% Similarity=0.717 Sum_probs=12.4
Q ss_pred ceeeCCEEEEEEeC
Q 037351 59 RFKIGDTLQFKYKK 72 (178)
Q Consensus 59 tF~VGDtLvF~y~~ 72 (178)
++++||.|.|.+..
T Consensus 2 ~~~~Ge~v~~~~~~ 15 (83)
T PF14326_consen 2 VYRVGERVRFRVTS 15 (83)
T ss_pred cccCCCEEEEEEEe
Confidence 68999999999974
No 73
>PF15436 PGBA_N: Plasminogen-binding protein pgbA N-terminal
Probab=27.91 E-value=42 Score=28.64 Aligned_cols=74 Identities=22% Similarity=0.301 Sum_probs=46.9
Q ss_pred ceeeCCEEEEEEeCCcEEEE--CcccccccCCCCCcee-----------ccCCceEE--------EecccceEEEEeCCC
Q 037351 59 RFKIGDTLQFKYKKDSVMAV--TEVEYKKCRSSHPLFY-----------SNNGNTVY--------KLAKPGLFYFISGVS 117 (178)
Q Consensus 59 tF~VGDtLvF~y~~hsV~~V--~~~~Y~~C~~s~pi~~-----------~~~G~~~v--------~L~~~G~~YFiCsv~ 117 (178)
..++||.++|+|-.++.+.+ |++.|+.-....+... ...|++-- .-...|..|++-...
T Consensus 79 ~pk~GD~vil~~~Y~rallIAPn~e~Y~~i~~~~~~i~fihpDl~aa~L~~~g~~P~~~dfrkfc~~~svGli~iv~~n~ 158 (218)
T PF15436_consen 79 VPKKGDEVILNYLYNRALLIAPNQETYEKIKSSYPNINFIHPDLFAAFLSENGHDPTREDFRKFCNQYSVGLIFIVLKNK 158 (218)
T ss_pred ccCCCCEEEEeecccceEEEcCCHHHHHHHHHhCCCceEecHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCEEEEEEcCc
Confidence 68999999999998776665 8888887654433211 02343210 113467777777654
Q ss_pred ---CCCCCCCeEEEEEec
Q 037351 118 ---GHCERGLKMIIKVLE 132 (178)
Q Consensus 118 ---gHC~~GmKl~I~V~~ 132 (178)
-.|+....+...-..
T Consensus 159 ~~~lDcqSF~iL~~~~~~ 176 (218)
T PF15436_consen 159 LYILDCQSFAILEKKPFD 176 (218)
T ss_pred EEEEecCceeEEEEEecc
Confidence 578888777665443
No 74
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.92 E-value=91 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.549 Sum_probs=23.7
Q ss_pred EEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
.++.+++|.||..|+. -|-. .|.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 5678899999999986 5654 4888888765
No 75
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=26.68 E-value=77 Score=22.45 Aligned_cols=44 Identities=23% Similarity=0.555 Sum_probs=31.5
Q ss_pred eEEEEEcCCC---CCCCCCC----CC-ccccccccccccceeeCCEEEEEEe
Q 037351 28 STEFEVGGDN---GWHVPNA----KE-GAQMYNKWASNHRFKIGDTLQFKYK 71 (178)
Q Consensus 28 a~~~~VGg~~---GW~~~~~----~~-~~~~Y~~WA~~~tF~VGDtLvF~y~ 71 (178)
...|+||+.. .|+.... .+ +..+|..|...-.+..|..+.|+|-
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 4678899853 6986211 01 0136899999889999999999995
No 76
>PF15240 Pro-rich: Proline-rich
Probab=26.40 E-value=30 Score=28.74 Aligned_cols=11 Identities=18% Similarity=0.639 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 037351 9 LIFIFFFFSLL 19 (178)
Q Consensus 9 ~~~~~~~~s~~ 19 (178)
||+||++|+||
T Consensus 1 MLlVLLSvALL 11 (179)
T PF15240_consen 1 MLLVLLSVALL 11 (179)
T ss_pred ChhHHHHHHHH
Confidence 45566665554
No 77
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.19 E-value=54 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred ccccccccccceeeCCEEEEEEe
Q 037351 49 QMYNKWASNHRFKIGDTLQFKYK 71 (178)
Q Consensus 49 ~~Y~~WA~~~tF~VGDtLvF~y~ 71 (178)
....+|++..+.++||.|+|...
T Consensus 26 ~~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 26 LSITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEEecCCCcccCCCEEEEEEE
Confidence 45678889999999999999875
No 78
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=25.87 E-value=82 Score=27.45 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=22.6
Q ss_pred CcccccchhhhHHHHHHHHHHHHhhcc
Q 037351 150 NDAAIERPAAIASLTIMLLIMSFSGLL 176 (178)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (178)
....+.-|+-||-+.|+|++|...||.
T Consensus 185 S~S~vilpvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 185 SYSSVILPVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334577999999999999999999974
No 79
>PTZ00213 asparagine synthetase A; Provisional
Probab=25.46 E-value=1.1e+02 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCCCCCC---CCcccccccccccc
Q 037351 27 TSTEFEVGGDNGWHVPNA---KEGAQMYNKWASNH 58 (178)
Q Consensus 27 ~a~~~~VGg~~GW~~~~~---~~~~~~Y~~WA~~~ 58 (178)
.+++|+.| .||..+.. ...+.||++|.+..
T Consensus 196 ~gaVFi~~--IG~~L~~G~~Hd~RApDYDDW~t~~ 228 (348)
T PTZ00213 196 YGAVFLIG--IGCKLSSGDTHDLRAPDYDDWSSPV 228 (348)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCcccccccc
Confidence 45677776 67777431 25568999998443
No 80
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=24.94 E-value=4.2e+02 Score=22.32 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=39.8
Q ss_pred ceeeCCEEEEEEeCCcEEE---ECcccccccCCCCCceeccCCceEEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 59 RFKIGDTLQFKYKKDSVMA---VTEVEYKKCRSSHPLFYSNNGNTVYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 59 tF~VGDtLvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
..-+|-.++|+-++.+|.. |.+-..+ .+. + .+......++.+++|.|+-.|+. -|-. .|++.|.|.+
T Consensus 142 ~lP~g~pV~~~ltS~DViHSF~VP~l~~K-~Da---i-PG~~n~~~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 142 AFPVNTPINFKITSNSVMNSFFIPQLGSQ-IYA---M-AGMQTKLHLIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEECCCEEEEEEEECchhhhhhhhhcCCe-eec---C-CCceEEEEEEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 6777888888887655432 1110000 010 0 11111235778999999999985 5665 4999988875
No 81
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.77 E-value=1e+02 Score=26.11 Aligned_cols=30 Identities=13% Similarity=0.424 Sum_probs=23.7
Q ss_pred EEEecccceEEEEeCCCCCCCC---CCeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCER---GLKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~---GmKl~I~V~~ 132 (178)
.+..+++|.+|..|+. -|-. .|.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 4678899999999986 5554 4898888774
No 82
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=24.59 E-value=25 Score=31.14 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCCCCCCCCccccccccccccceeeCCEEEEEE
Q 037351 29 TEFEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKY 70 (178)
Q Consensus 29 ~~~~VGg~~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y 70 (178)
.+..|-+.+||..- .||.=|+.=-.|. -|-..|..
T Consensus 211 YqR~v~garG~eqi------PN~~fW~~l~~l~-~Dg~~f~c 245 (278)
T PF02157_consen 211 YQRFVMGARGWEQI------PNYSFWAGLPSLV-ADGCDFVC 245 (278)
T ss_dssp ------------------------------------------
T ss_pred HHHHHhcCchhhhC------cCHHHHHhhHHHH-HHHHhhee
Confidence 44456678999975 3799998765554 47666654
No 83
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.19 E-value=1e+02 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.536 Sum_probs=23.8
Q ss_pred EEEecccceEEEEeCCCCCCCCC---CeEEEEEec
Q 037351 101 VYKLAKPGLFYFISGVSGHCERG---LKMIIKVLE 132 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~G---mKl~I~V~~ 132 (178)
.++.+++|.||..|+. -|-.| |.+.|.|.+
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 5678999999999986 56554 888888774
No 84
>PLN02792 oxidoreductase
Probab=23.20 E-value=1.6e+02 Score=28.08 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred cCCce--EEEecccceEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 037351 96 NNGNT--VYKLAKPGLFYFISGVSGHCERGLKMIIKVLETPSP 136 (178)
Q Consensus 96 ~~G~~--~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~~ 136 (178)
..|-. ++..|.||..+|=|-...|=..||.+.+.|.+...+
T Consensus 467 ~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~ 509 (536)
T PLN02792 467 PESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHS 509 (536)
T ss_pred CCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCc
Confidence 34544 577899999999999999999999999998866443
No 85
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=22.85 E-value=73 Score=22.13 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCCCCCCccccccccccccceeeCCEEEEEEeCCcEEE
Q 037351 30 EFEVGGDNGWHVPNAKEGAQMYNKWASNHRFKIGDTLQFKYKKDSVMA 77 (178)
Q Consensus 30 ~~~VGg~~GW~~~~~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~hsV~~ 77 (178)
.-.+|.+.|=++| ..|.+.-.+..||.|.+.-..+.++.
T Consensus 3 i~k~GNS~~vtIP---------k~i~~~lgl~~Gd~v~v~~~~~~iii 41 (74)
T TIGR02609 3 IRKVGNSLVVTLP---------KEVLESLGLKEGDTLYVDEEEGGLKL 41 (74)
T ss_pred EEEECCeeEEEEC---------HHHHHHcCcCCCCEEEEEEECCEEEE
Confidence 4568888888887 57778889999999988766665543
No 86
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=22.44 E-value=1.6e+02 Score=26.73 Aligned_cols=45 Identities=24% Similarity=0.440 Sum_probs=28.5
Q ss_pred eeEEEEEcCCCCCCCCC---CCCccccccccccccceeeCCEEEEEEeCCcEEEE
Q 037351 27 TSTEFEVGGDNGWHVPN---AKEGAQMYNKWASNHRFKIGDTLQFKYKKDSVMAV 78 (178)
Q Consensus 27 ~a~~~~VGg~~GW~~~~---~~~~~~~Y~~WA~~~tF~VGDtLvF~y~~hsV~~V 78 (178)
.+++|+.| .||..+. -...+.||++|.-| ||.|+.+-.-+..+|+
T Consensus 195 ~gaVFi~~--IG~~L~~g~~Hd~RapDYDDW~LN-----GDilvw~~~l~~a~EL 242 (327)
T PRK05425 195 YGAVFLIG--IGGKLSDGKPHDGRAPDYDDWGLN-----GDILVWNPVLDDAFEL 242 (327)
T ss_pred hCcEEEEe--ccCcCCCCCcCCCCCCCCcCcccC-----ceEEEEccccCceeee
Confidence 45667765 6777643 13566899999633 8888766544544444
No 87
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=21.82 E-value=43 Score=23.44 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=10.9
Q ss_pred cccceeeCCEEEEEEeC
Q 037351 56 SNHRFKIGDTLQFKYKK 72 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~ 72 (178)
..+..++||.++|.+..
T Consensus 70 ~~n~L~~GD~~~F~~~~ 86 (100)
T PF02362_consen 70 RDNGLKEGDVCVFELIG 86 (100)
T ss_dssp HHCT--TT-EEEEEE-S
T ss_pred HHcCCCCCCEEEEEEec
Confidence 35789999999999975
No 88
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.69 E-value=2.3e+02 Score=18.11 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.2
Q ss_pred CCceEEEecccceEEEEeCCCCCCCCCCeEEEEEec
Q 037351 97 NGNTVYKLAKPGLFYFISGVSGHCERGLKMIIKVLE 132 (178)
Q Consensus 97 ~G~~~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~ 132 (178)
.++..+-|+..|.+.=+=.-++ |+-||++.+....
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~ 38 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKD 38 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechh
Confidence 4566788888888766655555 9999999887654
No 89
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=21.40 E-value=1.3e+02 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEecccceEEEEeCCCCCCCCCCeEEEEEecCCC
Q 037351 101 VYKLAKPGLFYFISGVSGHCERGLKMIIKVLETPS 135 (178)
Q Consensus 101 ~v~L~~~G~~YFiCsv~gHC~~GmKl~I~V~~~~~ 135 (178)
.+++.. |.-|-|.+ ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 467764 99999986 699999999999886654
No 90
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=20.62 E-value=85 Score=18.08 Aligned_cols=16 Identities=25% Similarity=0.908 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhcccC
Q 037351 163 LTIMLLIMSFSGLLLY 178 (178)
Q Consensus 163 ~~~~~~~~~~~~~~~~ 178 (178)
.++..++++.+|+.++
T Consensus 12 ~al~~lv~~iTGl~l~ 27 (27)
T PF03929_consen 12 FALFMLVFAITGLILW 27 (27)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3456677888998763
No 91
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=20.33 E-value=77 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.2
Q ss_pred cccceeeCCEEEEEEeCC
Q 037351 56 SNHRFKIGDTLQFKYKKD 73 (178)
Q Consensus 56 ~~~tF~VGDtLvF~y~~h 73 (178)
.++.+..||.|.|.+..+
T Consensus 15 ~~~pv~~Gd~i~~~~~~~ 32 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFFGQ 32 (64)
T ss_dssp TTEEEETT-EEEEEETTE
T ss_pred cCCCccCCCEEEEEeCCc
Confidence 457899999999999754
Done!