BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037352
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 9/122 (7%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNPNIRRG 80
+G +T ED+ ++ ++ NG + NW PR L R K C +RWFNHL+P + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQ---NW---PRITSFLPNRSPKQCRERWFNHLDPAVVKH 55
Query: 81 DFTLEEDELII-NLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLLIS 139
+T EEDE I N + GSKW+ I L+PGRT + N +S + +N +L+
Sbjct: 56 AWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115
Query: 140 DR 141
DR
Sbjct: 116 DR 117
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRG 80
+ +G WT EED+R+ + G + W D+ + R GK C +RW NHLNP +++
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80
Query: 81 DFTLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
+T EED +I R G++W I LLPGRT V N+ S MR K+
Sbjct: 81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW-NSTMRRKV 128
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 60 RCGKSCHDRWFNHLNPNIRRGDFTLEEDELII-NLCRAGSK-WTNIGLLLPGRTHKD 114
R C RW LNP + +G +T EED+ +I ++ + G K W++I L GR K
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQ 64
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 20 MIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRR 79
M+ +G WT EED+R+ + G + W + + R GK C +RW NHLNP +++
Sbjct: 1 MLIKGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKK 56
Query: 80 GDFTLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
+T EED +I R G++W I LLPGRT + N+ S MR K+
Sbjct: 57 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDF 82
+G WT EED+R+ + G + W + + R GK C +RW NHLNP +++ +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59
Query: 83 TLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
T EED +I R G++W I LLPGRT + N+ S MR K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 105
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDF 82
+G WT EED+R+ + G + W + + R GK C +RW NHLNP +++ +
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113
Query: 83 TLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
T EED +I R G++W I LLPGRT + N+ S MR K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 159
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 26 WTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNPNIRRGDFT 83
WT EEDE+LK + NG + +W+ + A L R C RW LNP + +G +T
Sbjct: 9 WTREEDEKLKKLVEQNGTD---DWKVI---ANYLPNRTDVQCQHRWQKVLNPELIKGPWT 62
Query: 84 LEEDELIINLCR--AGSKWTNIGLLLPGRTHK 113
EED+ +I L + +W+ I L GR K
Sbjct: 63 KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGK 94
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDF 82
+G WT EED+++ I L + G W + + R GK C +RW NHLNP +++ +
Sbjct: 7 KGPWTKEEDQKV---IELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSW 62
Query: 83 TLEEDELIINLCRA-GSKWTNIGLLLPGRTHKDVMNYCKTSYMR 125
T EED +I + G++W I LLPGRT V N+ ++ R
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 26 WTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLE 85
+T EEDE LK + +G + P R + C DRW N+L P+I +T E
Sbjct: 14 FTPEEDEMLKRAVAQHGSDWKMIAATFPN-----RNARQCRDRWKNYLAPSISHTPWTAE 68
Query: 86 EDELIIN-LCRAGSKWTNIGLLLPGRTHKDVMN 117
ED L++ + G +W I PGRT + N
Sbjct: 69 EDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKN 101
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 27 TGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNPNIRRGDFTL 84
T EED +L+ ++ G + D R + L+ R + C +RW N++NP +R ++
Sbjct: 5 TEEEDLKLQQLVMRYGAK------DWIRISQLMITRNPRQCRERWNNYINPALRTDPWSP 58
Query: 85 EEDELI-INLCRAGSKWTNIGLLLPGRTHKDVMN 117
EED L+ G KW I L R+ ++ N
Sbjct: 59 EEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRN 92
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNP 75
+G WT EED+RL + G + W + + R GK C +RW NHLNP
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNP 51
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNP 75
+G WT EED+R+ + G + W + + R GK C +RW NHLNP
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNP 51
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNP 75
+G WT EED+R+ + G + W + + R GK C +RW NHLNP
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPK---RWSVIAKHLKG-RIGKQCRERWHNHLNP 51
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 77 IRRGDFTLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
+++ +T EED +I R G++W I LLPGRT + N+ S MR K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 77 IRRGDFTLEEDELIINL-CRAGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128
+++ +T EED ++ R G++W I LLPGRT + N+ S MR K+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW-NSTMRRKV 54
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 25 FWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNPNIRRGDF 82
W EDE LK+ ++ G+ W R A LL + K C RW+ L+P+I++ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKN---QWS---RIASLLHRKSAKQCKARWYEWLDPSIKKTEW 64
Query: 83 T 83
+
Sbjct: 65 S 65
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 21 IRRGFWTGEEDERLKSFILLNGEEG 45
I F+TG+ D R + ILLNGE G
Sbjct: 330 ILESFFTGKFDYRPQDIILLNGEYG 354
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 26 WTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNP 75
WT EEDE+LK + NG + +W+ + A L R C RW LNP
Sbjct: 6 WTREEDEKLKKLVEQNGTD---DWKVI---ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 26 WTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLL--RCGKSCHDRWFNHLNP 75
WT EEDE+LK + NG + +W+ + A L R C RW LNP
Sbjct: 6 WTREEDEKLKKLVEQNGTD---DWKVI---ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|2IT9|A Chain A, Crystal Structure Of A Protein With Unknown Function From
Duf155 Family (Yp_292156.1) From Prochlorococcus Sp.
Natl2a At 1.80 A Resolution
pdb|2IT9|B Chain B, Crystal Structure Of A Protein With Unknown Function From
Duf155 Family (Yp_292156.1) From Prochlorococcus Sp.
Natl2a At 1.80 A Resolution
pdb|2IT9|C Chain C, Crystal Structure Of A Protein With Unknown Function From
Duf155 Family (Yp_292156.1) From Prochlorococcus Sp.
Natl2a At 1.80 A Resolution
pdb|2IT9|D Chain D, Crystal Structure Of A Protein With Unknown Function From
Duf155 Family (Yp_292156.1) From Prochlorococcus Sp.
Natl2a At 1.80 A Resolution
Length = 127
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 4 HIMEKMCPSCVSKDHHMIRRGFWTGEED-----ERLKSFILLNGEEGGWNWEDVPRGAGL 58
++ ++C D + + + G+ED ER +LNG++ GWN + +GL
Sbjct: 44 EVVXELC------DQYKLVKEQLXGDEDITLELERRPWLAILNGDQYGWNLRLILSASGL 97
Query: 59 LRCGKSCHDRWFNHLNPNI 77
G + W H+ N+
Sbjct: 98 FNRGAEVY--WPRHVTNNV 114
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 26.6 bits (57), Expect = 8.3, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 20 MIRRGFWTGEEDERLKSFILLNGEEGGWNWEDV 52
++ G WT ++ S+ + G EG WNW++V
Sbjct: 105 LVNGGTWTRPHKAQVDSWETVFGNEG-WNWDNV 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,196,022
Number of Sequences: 62578
Number of extensions: 259564
Number of successful extensions: 447
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 21
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)