Query 037352
Match_columns 189
No_of_seqs 230 out of 1412
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 8.4E-38 2.9E-42 234.6 6.3 121 2-127 2-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.7E-36 9.1E-41 219.1 6.6 102 21-127 2-104 (105)
3 3zqc_A MYB3; transcription-DNA 100.0 1.5E-35 5.1E-40 223.3 9.1 105 23-132 2-107 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.9E-36 2E-40 218.2 4.8 101 23-128 1-102 (107)
5 3osg_A MYB21; transcription-DN 100.0 3.9E-35 1.3E-39 219.7 6.7 99 20-123 8-107 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 6.2E-35 2.1E-39 226.4 4.4 121 2-127 33-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 8.9E-33 3E-37 214.3 4.9 138 21-174 4-143 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 3E-23 1E-27 155.2 5.4 110 52-174 1-112 (128)
9 2dim_A Cell division cycle 5-l 99.9 7.9E-24 2.7E-28 142.8 0.3 65 19-87 5-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.8 2E-19 6.8E-24 121.9 3.4 57 66-123 10-67 (73)
11 1ign_A Protein (RAP1); RAP1,ye 99.7 3.6E-19 1.2E-23 144.2 3.2 103 20-123 5-197 (246)
12 1gvd_A MYB proto-oncogene prot 99.7 3.4E-19 1.1E-23 113.2 1.6 52 21-76 1-52 (52)
13 2d9a_A B-MYB, MYB-related prot 99.7 5.4E-19 1.9E-23 115.5 1.9 56 19-78 4-59 (60)
14 2cu7_A KIAA1915 protein; nucle 99.7 3.2E-18 1.1E-22 115.8 5.7 63 73-137 3-66 (72)
15 2juh_A Telomere binding protei 99.7 8.2E-19 2.8E-23 129.4 2.0 81 19-102 13-103 (121)
16 2din_A Cell division cycle 5-l 99.7 3.7E-18 1.3E-22 113.6 5.0 57 72-130 2-59 (66)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 5.5E-19 1.9E-23 112.2 0.5 52 21-76 1-52 (52)
18 2roh_A RTBP1, telomere binding 99.7 7E-18 2.4E-22 124.6 3.5 79 18-99 26-114 (122)
19 1ity_A TRF1; helix-turn-helix, 99.7 3.2E-18 1.1E-22 114.9 1.2 63 18-83 5-68 (69)
20 2d9a_A B-MYB, MYB-related prot 99.7 2.9E-17 1E-21 107.2 4.3 50 74-123 3-54 (60)
21 3sjm_A Telomeric repeat-bindin 99.7 7.4E-18 2.5E-22 111.5 0.1 55 21-78 9-64 (64)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 6.7E-17 2.3E-21 102.4 4.5 47 77-123 1-49 (52)
23 1gvd_A MYB proto-oncogene prot 99.7 1.1E-16 3.6E-21 101.6 5.0 47 77-123 1-49 (52)
24 1x41_A Transcriptional adaptor 99.6 2.2E-17 7.4E-22 107.9 1.3 54 19-76 4-57 (60)
25 1w0t_A Telomeric repeat bindin 99.6 1.5E-16 5.2E-21 101.3 4.2 46 78-123 1-50 (53)
26 1ity_A TRF1; helix-turn-helix, 99.6 2.4E-16 8.4E-21 105.6 5.4 58 72-130 3-64 (69)
27 1x41_A Transcriptional adaptor 99.6 1.6E-16 5.4E-21 103.7 4.2 50 74-123 3-54 (60)
28 2dim_A Cell division cycle 5-l 99.6 2.7E-16 9.3E-21 105.6 5.0 54 74-128 4-59 (70)
29 3zqc_A MYB3; transcription-DNA 99.6 1.4E-17 4.7E-22 124.9 -1.9 97 2-107 29-130 (131)
30 2din_A Cell division cycle 5-l 99.6 1.3E-17 4.4E-22 110.9 -2.2 57 19-81 5-61 (66)
31 1w0t_A Telomeric repeat bindin 99.6 6.1E-17 2.1E-21 103.1 0.3 50 22-74 1-51 (53)
32 2yum_A ZZZ3 protein, zinc fing 99.6 5.3E-16 1.8E-20 105.5 4.8 59 74-134 3-68 (75)
33 2elk_A SPCC24B10.08C protein; 99.6 8.5E-17 2.9E-21 104.4 0.7 51 20-73 6-56 (58)
34 2yum_A ZZZ3 protein, zinc fing 99.6 6.9E-17 2.4E-21 109.9 -1.2 62 19-81 4-67 (75)
35 2elk_A SPCC24B10.08C protein; 99.6 1.3E-15 4.4E-20 98.8 4.4 49 75-123 5-56 (58)
36 2ltp_A Nuclear receptor corepr 99.4 1.6E-16 5.6E-21 111.6 0.0 52 72-123 9-61 (89)
37 3sjm_A Telomeric repeat-bindin 99.6 1.7E-15 5.8E-20 100.1 4.3 47 77-123 9-59 (64)
38 2cu7_A KIAA1915 protein; nucle 99.6 1.8E-16 6.2E-21 107.1 -0.9 56 19-79 5-60 (72)
39 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.3E-14 4.4E-19 104.5 5.7 87 76-174 1-89 (105)
40 3osg_A MYB21; transcription-DN 99.5 1.3E-14 4.6E-19 107.9 6.0 89 74-174 6-95 (126)
41 2llk_A Cyclin-D-binding MYB-li 99.5 3E-15 1E-19 101.3 1.4 56 15-77 15-70 (73)
42 2cqr_A RSGI RUH-043, DNAJ homo 99.5 2.7E-14 9.3E-19 96.6 4.7 49 75-123 14-67 (73)
43 2k9n_A MYB24; R2R3 domain, DNA 99.5 8.8E-16 3E-20 111.2 -3.1 69 2-75 28-100 (107)
44 2ckx_A NGTRF1, telomere bindin 99.5 1.2E-14 4.3E-19 100.6 2.5 68 24-95 1-78 (83)
45 2ltp_A Nuclear receptor corepr 99.2 7.5E-15 2.6E-19 103.1 0.0 53 18-75 11-63 (89)
46 2yus_A SWI/SNF-related matrix- 99.4 4.7E-14 1.6E-18 96.9 3.3 47 76-122 15-62 (79)
47 2aje_A Telomere repeat-binding 99.4 3.2E-14 1.1E-18 102.5 1.9 73 20-95 10-91 (105)
48 2yus_A SWI/SNF-related matrix- 99.4 3.7E-14 1.2E-18 97.4 1.1 47 21-72 16-62 (79)
49 2cjj_A Radialis; plant develop 99.4 5.7E-13 1.9E-17 94.1 4.8 60 78-137 7-71 (93)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.3 9.8E-14 3.3E-18 93.8 0.6 55 19-74 14-68 (73)
51 1x58_A Hypothetical protein 49 99.3 1.1E-12 3.8E-17 85.2 5.0 47 77-123 6-56 (62)
52 1ign_A Protein (RAP1); RAP1,ye 99.3 7.2E-13 2.5E-17 107.3 4.8 53 75-128 4-63 (246)
53 2ckx_A NGTRF1, telomere bindin 99.3 8.2E-13 2.8E-17 91.4 4.2 44 80-123 1-50 (83)
54 2aje_A Telomere repeat-binding 99.3 3E-12 1E-16 92.2 5.5 50 74-123 8-63 (105)
55 2juh_A Telomere binding protei 99.3 2E-12 7E-17 95.2 3.6 51 73-123 11-67 (121)
56 2roh_A RTBP1, telomere binding 99.2 1.7E-11 5.7E-16 90.4 4.8 50 74-123 26-81 (122)
57 2cjj_A Radialis; plant develop 99.1 6.4E-12 2.2E-16 88.6 -0.4 51 22-73 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 2.3E-10 7.8E-15 74.6 4.2 46 78-123 11-57 (61)
59 3hm5_A DNA methyltransferase 1 99.0 2.2E-10 7.5E-15 80.5 3.6 65 61-130 16-86 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 99.0 4E-10 1.4E-14 75.8 4.5 58 76-135 5-67 (72)
61 1x58_A Hypothetical protein 49 99.0 8E-11 2.7E-15 76.4 0.3 49 21-74 6-57 (62)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 7.9E-10 2.7E-14 72.0 1.3 47 21-72 10-56 (61)
63 2iw5_B Protein corest, REST co 98.7 7.1E-09 2.4E-13 83.3 4.5 46 78-123 132-178 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 3E-09 1E-13 71.5 0.2 51 21-73 6-56 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.6 3.3E-08 1.1E-12 66.4 4.7 45 79-123 8-57 (73)
66 1wgx_A KIAA1903 protein; MYB D 98.5 1.4E-08 4.8E-13 68.2 1.0 52 22-74 7-58 (73)
67 1fex_A TRF2-interacting telome 98.5 1.7E-08 5.8E-13 65.2 -0.0 51 23-74 2-58 (59)
68 1fex_A TRF2-interacting telome 98.4 1.2E-07 4.2E-12 61.1 3.5 45 79-123 2-57 (59)
69 2xag_B REST corepressor 1; ami 98.4 8.1E-08 2.8E-12 85.2 3.2 44 80-123 381-425 (482)
70 2iw5_B Protein corest, REST co 98.4 3.4E-08 1.2E-12 79.4 0.6 49 21-74 131-179 (235)
71 4eef_G F-HB80.4, designed hema 98.3 3.6E-07 1.2E-11 61.0 2.7 42 79-120 20-66 (74)
72 4eef_G F-HB80.4, designed hema 98.2 2.3E-07 8E-12 61.9 0.5 47 23-70 20-66 (74)
73 1ug2_A 2610100B20RIK gene prod 98.2 1.4E-06 4.9E-11 60.2 4.3 43 81-123 35-81 (95)
74 2lr8_A CAsp8-associated protei 97.5 2.1E-07 7E-12 61.0 0.0 42 81-123 16-61 (70)
75 2yqk_A Arginine-glutamic acid 98.1 3.6E-06 1.2E-10 54.8 5.0 47 75-121 5-53 (63)
76 4iej_A DNA methyltransferase 1 97.9 1.6E-05 5.5E-10 55.5 4.7 52 68-123 23-80 (93)
77 2yqk_A Arginine-glutamic acid 97.8 5.1E-06 1.7E-10 54.1 1.2 47 19-70 5-52 (63)
78 1ofc_X ISWI protein; nuclear p 97.8 1.1E-05 3.9E-10 67.8 3.0 96 24-123 111-273 (304)
79 4a69_C Nuclear receptor corepr 97.7 3.8E-05 1.3E-09 53.9 4.3 44 79-122 43-87 (94)
80 2crg_A Metastasis associated p 97.6 5.2E-05 1.8E-09 50.3 4.4 43 79-121 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.6 9.7E-06 3.3E-10 71.9 0.6 46 22-72 379-424 (482)
82 3hm5_A DNA methyltransferase 1 97.6 1.2E-05 4.2E-10 56.2 0.7 48 21-72 28-79 (93)
83 4a69_C Nuclear receptor corepr 97.4 3.7E-05 1.3E-09 53.9 0.6 43 23-70 43-85 (94)
84 2crg_A Metastasis associated p 97.3 4.5E-05 1.5E-09 50.6 0.7 43 23-70 8-51 (70)
85 2lr8_A CAsp8-associated protei 96.3 4.9E-05 1.7E-09 49.7 0.0 47 25-74 16-62 (70)
86 2ebi_A DNA binding protein GT- 97.1 4.4E-05 1.5E-09 52.4 -1.1 51 22-72 3-62 (86)
87 2ebi_A DNA binding protein GT- 97.1 0.00013 4.4E-09 50.0 1.2 45 79-123 4-63 (86)
88 1ug2_A 2610100B20RIK gene prod 96.9 0.00011 3.9E-09 50.7 -0.4 45 25-71 35-79 (95)
89 2y9y_A Imitation switch protei 95.8 0.011 3.7E-07 50.8 5.3 97 24-123 124-289 (374)
90 4iej_A DNA methyltransferase 1 95.4 0.0035 1.2E-07 43.6 0.7 48 21-72 28-79 (93)
91 4b4c_A Chromodomain-helicase-D 93.1 0.082 2.8E-06 41.4 4.1 31 23-56 134-164 (211)
92 1irz_A ARR10-B; helix-turn-hel 92.0 0.2 6.9E-06 32.2 4.0 47 77-123 5-57 (64)
93 2xb0_X Chromo domain-containin 92.0 0.085 2.9E-06 43.4 2.8 29 24-55 169-197 (270)
94 1ofc_X ISWI protein; nuclear p 90.5 0.34 1.2E-05 40.5 5.1 44 80-123 111-156 (304)
95 1irz_A ARR10-B; helix-turn-hel 89.7 0.1 3.5E-06 33.7 1.0 49 21-70 5-54 (64)
96 4b4c_A Chromodomain-helicase-D 87.8 0.45 1.5E-05 37.0 3.8 46 78-123 6-57 (211)
97 3cz6_A DNA-binding protein RAP 66.2 4.1 0.00014 30.9 2.9 25 19-43 110-142 (168)
98 2xb0_X Chromo domain-containin 63.9 8.1 0.00028 31.6 4.5 45 79-123 3-53 (270)
99 2y9y_A Imitation switch protei 62.8 5.3 0.00018 34.2 3.3 35 22-56 227-261 (374)
100 2o8x_A Probable RNA polymerase 58.2 7.7 0.00026 23.7 2.8 38 85-123 18-56 (70)
101 2q1z_A RPOE, ECF SIGE; ECF sig 48.0 23 0.00078 25.6 4.4 27 96-123 150-176 (184)
102 3hug_A RNA polymerase sigma fa 45.9 15 0.00052 24.0 2.8 37 86-123 41-78 (92)
103 2rq5_A Protein jumonji; develo 44.5 3.4 0.00012 29.7 -0.7 45 48-95 65-113 (121)
104 1ig6_A MRF-2, modulator recogn 37.9 5.3 0.00018 27.7 -0.6 44 32-75 36-87 (107)
105 2p7v_B Sigma-70, RNA polymeras 37.8 32 0.0011 20.9 3.3 27 96-123 24-50 (68)
106 2li6_A SWI/SNF chromatin-remod 37.5 10 0.00035 26.7 0.9 35 89-123 53-96 (116)
107 2jrz_A Histone demethylase jar 36.0 23 0.00078 24.9 2.6 35 89-123 44-91 (117)
108 1c20_A DEAD ringer protein; DN 35.4 3.2 0.00011 29.9 -2.1 44 32-75 55-106 (128)
109 1ku3_A Sigma factor SIGA; heli 34.8 35 0.0012 21.1 3.1 41 82-123 11-55 (73)
110 1kkx_A Transcription regulator 34.7 17 0.00059 25.9 1.7 34 90-123 53-95 (123)
111 2lm1_A Lysine-specific demethy 34.6 27 0.00092 23.9 2.7 35 89-123 48-95 (107)
112 3e7l_A Transcriptional regulat 34.6 12 0.00042 23.0 0.8 29 29-61 19-47 (63)
113 2jxj_A Histone demethylase jar 34.0 5.3 0.00018 27.0 -1.1 42 33-74 40-88 (96)
114 1or7_A Sigma-24, RNA polymeras 33.7 36 0.0012 24.7 3.5 27 96-123 155-181 (194)
115 2jpc_A SSRB; DNA binding prote 31.3 43 0.0015 19.6 3.0 36 87-123 3-38 (61)
116 1tc3_C Protein (TC3 transposas 30.6 58 0.002 17.4 3.4 38 81-119 5-42 (51)
117 2eqy_A RBP2 like, jumonji, at 29.8 33 0.0011 24.2 2.6 35 89-123 46-93 (122)
118 1xsv_A Hypothetical UPF0122 pr 29.1 54 0.0019 22.5 3.6 37 86-123 29-66 (113)
119 1x3u_A Transcriptional regulat 28.8 57 0.002 20.1 3.4 40 82-123 17-56 (79)
120 2cxy_A BAF250B subunit, HBAF25 28.7 35 0.0012 24.1 2.6 35 89-123 55-102 (125)
121 1rp3_A RNA polymerase sigma fa 27.2 53 0.0018 24.5 3.5 35 88-123 193-228 (239)
122 1je8_A Nitrate/nitrite respons 25.5 57 0.0019 20.7 3.0 41 81-123 21-61 (82)
123 2yqf_A Ankyrin-1; death domain 24.4 49 0.0017 22.7 2.6 34 83-117 14-48 (111)
124 1ntc_A Protein (nitrogen regul 24.1 32 0.0011 22.7 1.5 29 29-61 51-79 (91)
125 3mzy_A RNA polymerase sigma-H 23.8 50 0.0017 22.9 2.7 27 96-123 123-149 (164)
126 3c57_A Two component transcrip 22.3 77 0.0026 20.7 3.2 41 81-123 27-67 (95)
127 3ulq_B Transcriptional regulat 22.2 84 0.0029 20.5 3.4 43 79-123 27-69 (90)
128 1u78_A TC3 transposase, transp 22.1 1.4E+02 0.0047 20.2 4.7 87 24-118 5-99 (141)
129 1fse_A GERE; helix-turn-helix 22.1 76 0.0026 19.0 3.0 42 80-123 10-51 (74)
130 2rnj_A Response regulator prot 21.7 68 0.0023 20.6 2.8 41 81-123 29-69 (91)
131 2of5_H Leucine-rich repeat and 21.4 53 0.0018 22.9 2.3 29 88-117 14-43 (118)
132 2kk0_A AT-rich interactive dom 21.3 58 0.002 23.6 2.6 35 89-123 68-116 (145)
133 2of5_A Death domain-containing 21.2 61 0.0021 22.6 2.6 28 89-117 26-54 (114)
134 3cz6_A DNA-binding protein RAP 20.8 58 0.002 24.5 2.4 17 75-91 110-126 (168)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=8.4e-38 Score=234.65 Aligned_cols=121 Identities=34% Similarity=0.669 Sum_probs=99.0
Q ss_pred cccccccCCCcccccCC----CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCc
Q 037352 2 SEHIMEKMCPSCVSKDH----HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNI 77 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~ 77 (189)
|+.|.+++..+|..+.. |.+++|+||+|||++|+++|.+||. + +|..||..|+ ||++.||++||.++|+|.+
T Consensus 2 a~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 2 EAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGP-K--RWSDIAKHLK-GRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp --------------------CTTCCCSCCCHHHHHHHHHHHHHTCS-C--CHHHHHHHSS-SCCHHHHHHHHHHTTCSSS
T ss_pred ccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCC-C--CHHHHHHHhc-CCcHHHHHHHHHHhccccc
Confidence 57889999999998765 6789999999999999999999997 5 8999999995 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhhhhhh
Q 037352 78 RRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNK 127 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~ 127 (189)
++++||+|||++|+++|. ||++|+.||+.|||||+++|++||+.++ +++
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~-~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM-RRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT-TC-
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH-hcc
Confidence 999999999999999999 9999999999999999999999999998 544
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.7e-36 Score=219.08 Aligned_cols=102 Identities=36% Similarity=0.751 Sum_probs=97.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCCc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGSK 99 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~ 99 (189)
+++|+||+|||++|+++|.+||. + +|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|. ||++
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~ 77 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR 77 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999998 5 8999999995 8999999999999999999999999999999999999 9999
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhhhh
Q 037352 100 WTNIGLLLPGRTHKDVMNYCKTSYMRNK 127 (189)
Q Consensus 100 W~~Ia~~l~gRt~~q~k~rw~~~l~k~~ 127 (189)
|+.||+.|||||++||++||+.++ +++
T Consensus 78 W~~Ia~~l~gRt~~~~k~rw~~~~-~~~ 104 (105)
T 1gv2_A 78 WAEIAKLLPGRTDNAIKNHWNSTM-RRK 104 (105)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHHT-C--
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH-hcc
Confidence 999999999999999999999998 544
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.5e-35 Score=223.30 Aligned_cols=105 Identities=35% Similarity=0.662 Sum_probs=98.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCCccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGSKWT 101 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~ 101 (189)
||+||+|||++|+++|..||. + +|..||..|+ ||++.||++||.++|+|.+++++||.|||++|+++|. ||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 77 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP-Q--NWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWS 77 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS-C--CGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-C--CHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHH
Confidence 799999999999999999997 5 9999999995 8999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCCHHHHHHHHHHhhhhhhhhhcC
Q 037352 102 NIGLLLPGRTHKDVMNYCKTSYMRNKMSNRG 132 (189)
Q Consensus 102 ~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~ 132 (189)
.||..|||||++||++||+++| ++++....
T Consensus 78 ~Ia~~l~gRt~~~~k~rw~~~l-~~~~~~~~ 107 (131)
T 3zqc_A 78 VIAKLIPGRTDNAIKNRWNSSI-SKRISTNS 107 (131)
T ss_dssp HHTTTSTTCCHHHHHHHHHHTT-GGGCCCCT
T ss_pred HHHHHcCCCCHHHHHHHHHHHH-HHHhhcCC
Confidence 9999999999999999999999 66654433
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.9e-36 Score=218.19 Aligned_cols=101 Identities=27% Similarity=0.502 Sum_probs=96.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCCccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGSKWT 101 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~ 101 (189)
||+||+|||++|+++|..||. + +|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|. ||++|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~ 76 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGA-K--DWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWN 76 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCS-S--CHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC-C--CHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHH
Confidence 689999999999999999997 5 9999999996 8999999999999999999999999999999999999 999999
Q ss_pred cccccCCCCCHHHHHHHHHHhhhhhhh
Q 037352 102 NIGLLLPGRTHKDVMNYCKTSYMRNKM 128 (189)
Q Consensus 102 ~Ia~~l~gRt~~q~k~rw~~~l~k~~~ 128 (189)
.||+.|||||++||++||+.++ ++..
T Consensus 77 ~Ia~~l~gRt~~~~k~rw~~l~-r~~~ 102 (107)
T 2k9n_A 77 KISKFLKNRSDNNIRNRWMMIA-RHRA 102 (107)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHH-HHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHH-hhHH
Confidence 9999999999999999999988 4443
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.9e-35 Score=219.71 Aligned_cols=99 Identities=32% Similarity=0.557 Sum_probs=96.6
Q ss_pred CcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCC
Q 037352 20 MIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGS 98 (189)
Q Consensus 20 ~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~ 98 (189)
.+++|+||+|||++|+++|..||. +|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|. ||+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 489999999999999999999998 9999999995 8999999999999999999999999999999999999 999
Q ss_pred ccccccccCCCCCHHHHHHHHHHhh
Q 037352 99 KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 99 ~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+|..||+.|||||+++|++||+.++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~ 107 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTIS 107 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999988
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=6.2e-35 Score=226.43 Aligned_cols=121 Identities=31% Similarity=0.644 Sum_probs=103.6
Q ss_pred cccccccCCCcccccC----CCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCc
Q 037352 2 SEHIMEKMCPSCVSKD----HHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNI 77 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~----~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~ 77 (189)
|+.|..++..+|.++. .|.+++|+||+|||++|+++|..||. . +|..||..|+ |||+.||++||.++|+|.+
T Consensus 33 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~-~--~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~ 108 (159)
T 1h89_C 33 ANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHLK-GRIGKQCRERWHNHLNPEV 108 (159)
T ss_dssp ----------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCS-C--CHHHHHHTST-TCCHHHHHHHHHHTTCTTS
T ss_pred HHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCc-c--cHHHHHHHcC-CCCHHHHHHHHHHHhCccc
Confidence 4677789999998753 36689999999999999999999997 4 7999999995 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhhhhhh
Q 037352 78 RRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNK 127 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~ 127 (189)
++++||+|||.+|++++. ||++|+.||+.|||||+++|++||+.++ +++
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~-r~~ 158 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM-RRK 158 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTT-CC-
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH-hcc
Confidence 999999999999999999 9999999999999999999999999998 544
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=8.9e-33 Score=214.28 Aligned_cols=138 Identities=25% Similarity=0.456 Sum_probs=80.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCC-
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGS- 98 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~- 98 (189)
+++|+||+|||++|+++|.+||. + +|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|. ||.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~ 79 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGT-D--DWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPK 79 (159)
T ss_dssp -------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcc
Confidence 78999999999999999999997 5 9999999995 8999999999999999999999999999999999999 996
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCCCCCcchHHHHHHhhhccccccccCCccccc
Q 037352 99 KWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLLISDREGSHQQPHHLLLLLLLKRKTSFKKSLRPKFRRT 174 (189)
Q Consensus 99 ~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (189)
+|..||..|||||+.||++||+++| ...+ .........+..........+..+..++.-.+.++
T Consensus 80 ~W~~Ia~~l~~Rt~~qcr~Rw~~~l-~p~~-----------~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt 143 (159)
T 1h89_C 80 RWSVIAKHLKGRIGKQCRERWHNHL-NPEV-----------KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 143 (159)
T ss_dssp CHHHHHHTSTTCCHHHHHHHHHHTT-CTTS-----------CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCC
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHh-Cccc-----------cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Confidence 6999999999999999999999988 3221 22334455556666666777777777766544444
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.88 E-value=3e-23 Score=155.25 Aligned_cols=110 Identities=20% Similarity=0.365 Sum_probs=70.3
Q ss_pred cccccCCccCCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCC-ccccccccCCCCCHHHHHHHHHHhhhhhhhh
Q 037352 52 VPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGS-KWTNIGLLLPGRTHKDVMNYCKTSYMRNKMS 129 (189)
Q Consensus 52 Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~ 129 (189)
||+.| +|||+.||++||.++|+|.+++++||+|||++|+++|. ||. +|..||..|||||+.||++||+++| ...+
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l-~p~~- 77 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL-NPEV- 77 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT-CSSS-
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc-cccc-
Confidence 78889 49999999999999999999999999999999999999 996 6999999999999999999999988 3221
Q ss_pred hcCCCCcccCCCCCCCCCcchHHHHHHhhhccccccccCCccccc
Q 037352 130 NRGVDLLLISDREGSHQQPHHLLLLLLLKRKTSFKKSLRPKFRRT 174 (189)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (189)
.........+.....+....+..+..++.-.+.++
T Consensus 78 ----------~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt 112 (128)
T 1h8a_C 78 ----------KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRT 112 (128)
T ss_dssp ----------CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCC
T ss_pred ----------ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCC
Confidence 22344555566666677777777777765544443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=7.9e-24 Score=142.78 Aligned_cols=65 Identities=25% Similarity=0.619 Sum_probs=61.8
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCCCCHHHH
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGDFTLEED 87 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~WT~eEd 87 (189)
+.+++|+||+|||++|+++|.+||. + +|..||..|+ +||+.||++||.++|+|.+++++||+|||
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK-N--QWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS-S--CHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4599999999999999999999995 4 9999999996 89999999999999999999999999997
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.76 E-value=2e-19 Score=121.85 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=46.3
Q ss_pred cccccccCCCCccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 66 HDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 66 ~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.-||.++|+|.+++++||+|||++|+++|. +|++|+.||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 347999999999999999999999999999 999999999999 999999999998654
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.74 E-value=3.6e-19 Score=144.20 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=87.7
Q ss_pred CcccCCCCHHHHHHHHHHHHHhCCCC--CCCccccccccCCccCCCcccccccccCCCCcc-------------------
Q 037352 20 MIRRGFWTGEEDERLKSFILLNGEEG--GWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIR------------------- 78 (189)
Q Consensus 20 ~lkkg~WT~eED~~L~~~v~~~g~~~--~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~------------------- 78 (189)
.+++++||+|||+.|+++|.+||... ...|..||..|+ |||+.||+.||..+|.+.+.
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 38899999999999999999998721 112999999995 99999999999999999886
Q ss_pred ----------CCCCCHHHHHHHHHHhh--c--------------------------------------------------
Q 037352 79 ----------RGDFTLEEDELIINLCR--A-------------------------------------------------- 96 (189)
Q Consensus 79 ----------~~~WT~eEd~~L~~~v~--~-------------------------------------------------- 96 (189)
+..||.+||-.|+..+. +
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 78999999998887653 1
Q ss_pred ---C----CccccccccCCCCCHHHHHHHHHHhh
Q 037352 97 ---G----SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 97 ---g----~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
| ..|.+||+.+|+||...+|+||...|
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHH
Confidence 1 16999999999999999999999888
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.74 E-value=3.4e-19 Score=113.21 Aligned_cols=52 Identities=40% Similarity=0.832 Sum_probs=48.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCC
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPN 76 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~ 76 (189)
|++|+||+|||++|+++|.+||. + +|..||..|+ |||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 68999999999999999999997 5 7999999995 899999999999999984
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=5.4e-19 Score=115.46 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=52.0
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCcc
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIR 78 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~ 78 (189)
+.+++++||+|||++|+++|.+||. . +|..||..|+ +||+.||++||.++|+|.++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 3499999999999999999999995 4 9999999995 89999999999999999875
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.73 E-value=3.2e-18 Score=115.82 Aligned_cols=63 Identities=29% Similarity=0.408 Sum_probs=55.8
Q ss_pred CCCCccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCCcc
Q 037352 73 LNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLL 137 (189)
Q Consensus 73 L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~~~ 137 (189)
++|.+++++||+|||++|+++|. ||.+|..||.+|||||+.||++||+.++ ++.... |+++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l-~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF-KNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHH-HHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHH-HHHHhc-CCCCCc
Confidence 67899999999999999999999 9999999999999999999999999999 544433 666544
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.72 E-value=8.2e-19 Score=129.40 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=75.0
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC---CccCCCcccccccccCC-----CCccCC-CCCHHHHHH
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG---LLRCGKSCHDRWFNHLN-----PNIRRG-DFTLEEDEL 89 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~---~~Rt~~qc~~Rw~~~L~-----p~~~~~-~WT~eEd~~ 89 (189)
...++++||+|||+.|+++|++||. + +|..|+..++ ++||+.+|++||.+++. |.++++ +|+++|+..
T Consensus 13 ~rr~r~~WT~EEd~~L~~gV~k~G~-G--~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 13 QRRIRRPFSVAEVEALVEAVEHLGT-G--RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHGG-G--CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-C--CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4589999999999999999999998 7 9999999852 48999999999999998 999999 999999999
Q ss_pred HHHHhh-cCCcccc
Q 037352 90 IINLCR-AGSKWTN 102 (189)
Q Consensus 90 L~~~v~-~g~~W~~ 102 (189)
|+.++. +|++|..
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 999999 9999977
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=113.57 Aligned_cols=57 Identities=16% Similarity=0.347 Sum_probs=52.7
Q ss_pred cCCCCccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhhhhhhhhh
Q 037352 72 HLNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSN 130 (189)
Q Consensus 72 ~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~ 130 (189)
+|+|.+++++||.|||++|+++|. +|.+|..||. |+|||+.||++||+.+| ++.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l-~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLL-DKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHH-HHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHh-ChHhcC
Confidence 799999999999999999999999 9999999999 88999999999999999 554433
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.72 E-value=5.5e-19 Score=112.19 Aligned_cols=52 Identities=35% Similarity=0.695 Sum_probs=47.7
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCC
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPN 76 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~ 76 (189)
|++|+||+|||++|+++|.+||. + +|..||..|+ |||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGT-D--DWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCS-S--CHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 57999999999999999999998 6 9999999995 899999999999999984
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=7e-18 Score=124.57 Aligned_cols=79 Identities=24% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC---CccCCCcccccccccC-----CCCccCCCCCHHH-HH
Q 037352 18 HHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG---LLRCGKSCHDRWFNHL-----NPNIRRGDFTLEE-DE 88 (189)
Q Consensus 18 ~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~---~~Rt~~qc~~Rw~~~L-----~p~~~~~~WT~eE-d~ 88 (189)
+...++++||+|||+.|+++|++||. + +|..|+..+. .+||+.||++||.+++ +|.++++.|+++| +.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~ 102 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT-G--RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLD 102 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS-S--CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-C--ChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence 34578999999999999999999998 7 9999999741 4899999999999999 8999999999999 89
Q ss_pred HHHHHhh-cCCc
Q 037352 89 LIINLCR-AGSK 99 (189)
Q Consensus 89 ~L~~~v~-~g~~ 99 (189)
.|+.++. +|++
T Consensus 103 ~v~~~h~~~g~~ 114 (122)
T 2roh_A 103 RVLAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhhH
Confidence 9999999 8875
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=3.2e-18 Score=114.87 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=56.8
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCC-ccCCCcccccccccCCCCccCCCCC
Q 037352 18 HHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGL-LRCGKSCHDRWFNHLNPNIRRGDFT 83 (189)
Q Consensus 18 ~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~-~Rt~~qc~~Rw~~~L~p~~~~~~WT 83 (189)
.+..++++||+|||++|+++|.+||. + +|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS-S--CHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-C--cHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 34588999999999999999999996 5 99999999943 8999999999999999999987654
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=2.9e-17 Score=107.16 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=47.9
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cC-CccccccccCCCCCHHHHHHHHHHhh
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+|.+++++||+|||++|+++|. || ++|..||..|+|||+.||++||+++|
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 5788999999999999999999 99 59999999999999999999999998
No 21
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=7.4e-18 Score=111.51 Aligned_cols=55 Identities=27% Similarity=0.476 Sum_probs=49.1
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC-CccCCCcccccccccCCCCcc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG-LLRCGKSCHDRWFNHLNPNIR 78 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~-~~Rt~~qc~~Rw~~~L~p~~~ 78 (189)
.+|++||+|||++|+++|.+||. + +|..||..++ .+||+.||++||.++++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 68999999999999999999997 6 9999999863 379999999999999988764
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=6.7e-17 Score=102.44 Aligned_cols=47 Identities=28% Similarity=0.462 Sum_probs=43.9
Q ss_pred ccCCCCCHHHHHHHHHHhh-cCC-ccccccccCCCCCHHHHHHHHHHhh
Q 037352 77 IRRGDFTLEEDELIINLCR-AGS-KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 77 ~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+++++||+|||++|+++|. ||. +|..||..|||||+.||++||+++|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 998 8999999999999999999999988
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=1.1e-16 Score=101.57 Aligned_cols=47 Identities=30% Similarity=0.519 Sum_probs=44.6
Q ss_pred ccCCCCCHHHHHHHHHHhh-cCC-ccccccccCCCCCHHHHHHHHHHhh
Q 037352 77 IRRGDFTLEEDELIINLCR-AGS-KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 77 ~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+++++||+|||++|+++|. ||. +|..||..|+|||+.||++||+++|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 997 6999999999999999999999988
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.2e-17 Score=107.89 Aligned_cols=54 Identities=20% Similarity=0.403 Sum_probs=49.8
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCC
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPN 76 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~ 76 (189)
+.+++++||+|||++|+++|.+||. + +|..||..|+ +||+.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~-~--~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGF-G--NWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCT-T--CHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc-C--cHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3489999999999999999999995 4 9999999996 899999999999999875
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=1.5e-16 Score=101.28 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHhh-cC-CccccccccCC--CCCHHHHHHHHHHhh
Q 037352 78 RRGDFTLEEDELIINLCR-AG-SKWTNIGLLLP--GRTHKDVMNYCKTSY 123 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~--gRt~~q~k~rw~~~l 123 (189)
++++||+|||++|+++|. || ++|..||..|+ |||+.||++||.+++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999 99 69999999999 999999999999998
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.63 E-value=2.4e-16 Score=105.60 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=51.4
Q ss_pred cCCCCccCCCCCHHHHHHHHHHhh-cC-CccccccccCC--CCCHHHHHHHHHHhhhhhhhhh
Q 037352 72 HLNPNIRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLP--GRTHKDVMNYCKTSYMRNKMSN 130 (189)
Q Consensus 72 ~L~p~~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~--gRt~~q~k~rw~~~l~k~~~~~ 130 (189)
..++..++++||+|||++|+++|. || ++|..||..|+ |||+.||++||+++| +..+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l-~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK-KLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH-HTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc-CCCCCC
Confidence 346677899999999999999999 99 69999999999 999999999999999 555433
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.6e-16 Score=103.74 Aligned_cols=50 Identities=10% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cC-CccccccccCCCCCHHHHHHHHHHhh
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.+.+.+++||+|||++|+++|. || ++|..||+.|||||+.||++||+.+|
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999 99 79999999999999999999999988
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=105.62 Aligned_cols=54 Identities=19% Similarity=0.280 Sum_probs=49.7
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cC-CccccccccCCCCCHHHHHHHHHHhhhhhhh
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~ 128 (189)
.|.+++++||+|||++|+++|. || ++|..||..|+|||+.||++||+++| +..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L-~p~i 59 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL-DPSI 59 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS-CSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc-CCcc
Confidence 4678999999999999999999 99 79999999999999999999999999 4444
No 29
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.62 E-value=1.4e-17 Score=124.94 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=72.9
Q ss_pred cccccccCCCcccccCC----CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCc
Q 037352 2 SEHIMEKMCPSCVSKDH----HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNI 77 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~ 77 (189)
|++|.+++..+|.++.. |.+++|+||+|||++|+++|..||. +|..||..|+ |||+.||+.||.++|++.+
T Consensus 29 a~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 29 TSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS----KWSVIAKLIP-GRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp TTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTST-TCCHHHHHHHHHHTTGGGC
T ss_pred HHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHHHh
Confidence 56778899999987653 6799999999999999999999998 9999999995 8999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHhh-cCCccccccccC
Q 037352 78 RRGDFTLEEDELIINLCR-AGSKWTNIGLLL 107 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l 107 (189)
..++|+.+- +.... .+..|..|++.|
T Consensus 104 ~~~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 104 STNSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CCCTTSCCC----CCCCCC------------
T ss_pred hcCCCcccc----cCchhhhhhhhhhcchhc
Confidence 999887653 11112 455677777655
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-17 Score=110.89 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=51.6
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccCCC
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGD 81 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~ 81 (189)
|.+++++||+|||++|+++|..||. +|..||. + +|||+.||++||.++|+|.++++.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCCC
Confidence 5599999999999999999999998 9999999 6 369999999999999998776653
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.61 E-value=6.1e-17 Score=103.14 Aligned_cols=50 Identities=32% Similarity=0.500 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCC-ccCCCcccccccccCC
Q 037352 22 RRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGL-LRCGKSCHDRWFNHLN 74 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~-~Rt~~qc~~Rw~~~L~ 74 (189)
++|+||+|||++|+++|.+||. + +|..||..|+. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999996 5 99999999943 7999999999999864
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-16 Score=105.50 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cC------CccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCC
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AG------SKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVD 134 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g------~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~ 134 (189)
+|.+.+++||.|||++|+++|. || .+|..||.+|+|||..||++||+.+| .++.+.|+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l--~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYF--IKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHH--GGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhcCCC
Confidence 5788899999999999999999 99 78999999999999999999999999 334444543
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.60 E-value=8.5e-17 Score=104.38 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=46.3
Q ss_pred CcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccC
Q 037352 20 MIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHL 73 (189)
Q Consensus 20 ~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L 73 (189)
.+.+++||+|||++|+++|.+||. + +|..||..|+.+||+.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~-~--~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGL-G--NWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTT-T--CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 477999999999999999999995 4 99999999954799999999999865
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.9e-17 Score=109.95 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=52.6
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCC--CCCccccccccCCccCCCcccccccccCCCCccCCC
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEG--GWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRRGD 81 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~--~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~~~ 81 (189)
|.+++++||+|||++|+++|..||... ..+|..||..|+ +||+.||+.||+++|.+.++.+.
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 349999999999999999999999410 018999999996 89999999999999988766553
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=1.3e-15 Score=98.78 Aligned_cols=49 Identities=20% Similarity=0.460 Sum_probs=45.4
Q ss_pred CCccCCCCCHHHHHHHHHHhh-cC-CccccccccCC-CCCHHHHHHHHHHhh
Q 037352 75 PNIRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLP-GRTHKDVMNYCKTSY 123 (189)
Q Consensus 75 p~~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~-gRt~~q~k~rw~~~l 123 (189)
..+.+++||+|||++|+++|. || ++|..||.+|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 446688999999999999999 99 89999999999 999999999999876
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=1.6e-16 Score=111.62 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=50.2
Q ss_pred cCCCCccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 72 HLNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 72 ~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.++|.+++++||.|||++|+++|. ||++|..||..|||||++||++||++++
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~l 61 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYK 61 (89)
Confidence 567899999999999999999999 9999999999999999999999999999
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=1.7e-15 Score=100.08 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=42.9
Q ss_pred ccCCCCCHHHHHHHHHHhh-cC-CccccccccCC--CCCHHHHHHHHHHhh
Q 037352 77 IRRGDFTLEEDELIINLCR-AG-SKWTNIGLLLP--GRTHKDVMNYCKTSY 123 (189)
Q Consensus 77 ~~~~~WT~eEd~~L~~~v~-~g-~~W~~Ia~~l~--gRt~~q~k~rw~~~l 123 (189)
.++++||+|||++|+++|. || ++|..||+.++ |||+.||++||.+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999 98 58999999865 999999999999988
No 38
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.56 E-value=1.8e-16 Score=107.10 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=51.3
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCccC
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNIRR 79 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~~~ 79 (189)
|.+++|+||+|||++|+++|..||. +|..||..|+ |||+.||+.||.++|.+.++.
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4599999999999999999999998 9999999995 899999999999998775554
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.51 E-value=1.3e-14 Score=104.52 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=67.3
Q ss_pred CccCCCCCHHHHHHHHHHhh-cCC-ccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCCCCCcchHHH
Q 037352 76 NIRRGDFTLEEDELIINLCR-AGS-KWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLLISDREGSHQQPHHLLL 153 (189)
Q Consensus 76 ~~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
++++++||+|||++|+++|. ||. +|..||..|||||+.||+.||.++| ... ..........+....
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l-~p~-----------~~~~~Wt~eEd~~L~ 68 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL-NPE-----------VKKTSWTEEEDRIIY 68 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT-CCC-----------CCCCCCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc-CCc-----------ccccCCCHHHHHHHH
Confidence 36789999999999999999 997 6999999999999999999999988 221 223345555666666
Q ss_pred HHHhhhccccccccCCccccc
Q 037352 154 LLLLKRKTSFKKSLRPKFRRT 174 (189)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~ 174 (189)
.+....+..+..++.-.+.++
T Consensus 69 ~~~~~~G~~W~~Ia~~l~gRt 89 (105)
T 1gv2_A 69 QAHKRLGNRWAEIAKLLPGRT 89 (105)
T ss_dssp HHHHHHSSCHHHHHTTCTTCC
T ss_pred HHHHHhCCCHHHHHHHcCCCC
Confidence 677777777777766544443
No 40
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.51 E-value=1.3e-14 Score=107.89 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCCCCCcchHH
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLLISDREGSHQQPHHLL 152 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
.+..++++||+|||++|+++|. ||.+|..||..|||||..||+.||.++| ...+ .........+...
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l-~p~~-----------~~~~WT~eEd~~L 73 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL-APSI-----------SHTPWTAEEDALL 73 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT-STTS-----------CCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc-cccc-----------ccccCCHHHHHHH
Confidence 4568899999999999999999 9999999999999999999999999998 2222 2234555666666
Q ss_pred HHHHhhhccccccccCCccccc
Q 037352 153 LLLLLKRKTSFKKSLRPKFRRT 174 (189)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~ 174 (189)
..+....+..+..++.-...++
T Consensus 74 ~~~v~~~G~~W~~Ia~~l~gRt 95 (126)
T 3osg_A 74 VQKIQEYGRQWAIIAKFFPGRT 95 (126)
T ss_dssp HHHHHHHCSCHHHHHTTSTTCC
T ss_pred HHHHHHHCcCHHHHHHHcCCCC
Confidence 6677777888887776544444
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.50 E-value=3e-15 Score=101.27 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=47.0
Q ss_pred ccCCCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCCCc
Q 037352 15 SKDHHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNPNI 77 (189)
Q Consensus 15 ~~~~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p~~ 77 (189)
....|.+++|+||+|||++|+++|.+||. .|..||..| |||+.||+.||.. |....
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l--gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL--GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH--TSCHHHHHHHHHH-CSCCC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh--CCCHHHHHHHHHH-HHHHc
Confidence 33446799999999999999999999998 999999999 6999999999985 44433
No 42
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=2.7e-14 Score=96.55 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCccCCCCCHHHHHHHHHHhh-cC----CccccccccCCCCCHHHHHHHHHHhh
Q 037352 75 PNIRRGDFTLEEDELIINLCR-AG----SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 75 p~~~~~~WT~eEd~~L~~~v~-~g----~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+...+++||.+||.+|++++. || ++|..||.+|||||..||++||+.++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788999999999999999 98 68999999999999999999999887
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.47 E-value=8.8e-16 Score=111.20 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=60.7
Q ss_pred cccccccCCCcccccC----CCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCC
Q 037352 2 SEHIMEKMCPSCVSKD----HHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNP 75 (189)
Q Consensus 2 ~~~~~~~~~~~~~~~~----~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p 75 (189)
|+.|..++..+|.++. .|.+++|+||+|||++|+++|..||. +|..||..|+ |||+.||+.||..++..
T Consensus 28 a~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l~-gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 28 SQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFLK-NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred hhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence 4567788889998763 36699999999999999999999998 9999999994 89999999999887654
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.47 E-value=1.2e-14 Score=100.56 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCccccccc----cCCccCCCcccccccccC-----CCCccCC-CCCHHHHHHHHHH
Q 037352 24 GFWTGEEDERLKSFILLNGEEGGWNWEDVPRG----AGLLRCGKSCHDRWFNHL-----NPNIRRG-DFTLEEDELIINL 93 (189)
Q Consensus 24 g~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~----~~~~Rt~~qc~~Rw~~~L-----~p~~~~~-~WT~eEd~~L~~~ 93 (189)
++||+|||+.|+++|++||. + +|..|+.. | ++||+.+|++||.+++ +|.++++ +...+....++.+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~-g--~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~ 76 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGT-G--RWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAA 76 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCS-S--CHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-C--CcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHH
Confidence 47999999999999999998 7 99999996 6 4899999999999987 6776666 7778887888887
Q ss_pred hh
Q 037352 94 CR 95 (189)
Q Consensus 94 v~ 95 (189)
+.
T Consensus 77 ~a 78 (83)
T 2ckx_A 77 HA 78 (83)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=7.5e-15 Score=103.10 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=49.2
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCCC
Q 037352 18 HHMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLNP 75 (189)
Q Consensus 18 ~~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~p 75 (189)
.+.+++|+||+|||++|+++|..||. +|..||..|+ |||+.||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 35599999999999999999999998 9999999996 89999999999998764
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.43 E-value=4.7e-14 Score=96.86 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=44.3
Q ss_pred CccCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHh
Q 037352 76 NIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTS 122 (189)
Q Consensus 76 ~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~ 122 (189)
...+++||.|||++|+++|. ||++|..||.+|++||..||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 45678999999999999999 999999999999999999999999887
No 47
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.42 E-value=3.2e-14 Score=102.51 Aligned_cols=73 Identities=26% Similarity=0.254 Sum_probs=63.2
Q ss_pred CcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC---CccCCCcccccccccC-----CCCccCCCCCHHHHHH-H
Q 037352 20 MIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG---LLRCGKSCHDRWFNHL-----NPNIRRGDFTLEEDEL-I 90 (189)
Q Consensus 20 ~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~---~~Rt~~qc~~Rw~~~L-----~p~~~~~~WT~eEd~~-L 90 (189)
..++++||+|||+.|+++|++||. + +|..|+..+. ++||+.+|++||.+++ +|.++++.-+++|-.. +
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 378999999999999999999998 7 9999999652 4899999999999998 7899999887777644 6
Q ss_pred HHHhh
Q 037352 91 INLCR 95 (189)
Q Consensus 91 ~~~v~ 95 (189)
++|+.
T Consensus 87 ~~~~~ 91 (105)
T 2aje_A 87 LNAHG 91 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-14 Score=97.41 Aligned_cols=47 Identities=19% Similarity=0.354 Sum_probs=44.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCccccccccc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNH 72 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~ 72 (189)
..+++||+|||++|+++|.+||. +|..||.+|| +||+.||+.||.++
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 67899999999999999999996 9999999997 89999999999987
No 49
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.35 E-value=5.7e-13 Score=94.06 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=50.0
Q ss_pred cCCCCCHHHHHHHHHHhh-cC----CccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCCcc
Q 037352 78 RRGDFTLEEDELIINLCR-AG----SKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDLLL 137 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g----~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~~~ 137 (189)
..++||.|||.+|++++. || ++|..||..|||||..||++||+.++...+....|..+.+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P 71 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFP 71 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 467999999999999999 85 6799999999999999999999999844445666665543
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=9.8e-14 Score=93.81 Aligned_cols=55 Identities=13% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCC
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
+.+.+++||++||++|.++|..||.....+|..||..|+ |||..||+.||.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 338899999999999999999999321228999999995 8999999999998654
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.1e-12 Score=85.22 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=43.9
Q ss_pred ccCCCCCHHHHHHHHHHhh-cCCcccccc---ccCCCCCHHHHHHHHHHhh
Q 037352 77 IRRGDFTLEEDELIINLCR-AGSKWTNIG---LLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 77 ~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia---~~l~gRt~~q~k~rw~~~l 123 (189)
-++.+||+|||+.|++.|+ ||.+|+.|+ ..+++||..++++||+++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 3577999999999999999 999999999 6789999999999999988
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.33 E-value=7.2e-13 Score=107.34 Aligned_cols=53 Identities=23% Similarity=0.493 Sum_probs=45.9
Q ss_pred CCccCCCCCHHHHHHHHHHhh-cCCc------cccccccCCCCCHHHHHHHHHHhhhhhhh
Q 037352 75 PNIRRGDFTLEEDELIINLCR-AGSK------WTNIGLLLPGRTHKDVMNYCKTSYMRNKM 128 (189)
Q Consensus 75 p~~~~~~WT~eEd~~L~~~v~-~g~~------W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~ 128 (189)
+.+++++||+|||++|+++|. +|++ |.+||+.|||||++|||+||+.+| ++++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L-~~~l 63 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL-SKRL 63 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT-GGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH-hhhc
Confidence 357789999999999999999 9875 999999999999999999999999 5554
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=8.2e-13 Score=91.38 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHhh-cCC-cccccccc----CCCCCHHHHHHHHHHhh
Q 037352 80 GDFTLEEDELIINLCR-AGS-KWTNIGLL----LPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 80 ~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~----l~gRt~~q~k~rw~~~l 123 (189)
.+||.|||+.|+++|+ ||. +|+.|++. |+|||+.+||+||++++
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 4799999999999999 997 99999995 89999999999999999
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.29 E-value=3e-12 Score=92.17 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=45.3
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cCC-ccccccccC----CCCCHHHHHHHHHHhh
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AGS-KWTNIGLLL----PGRTHKDVMNYCKTSY 123 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l----~gRt~~q~k~rw~~~l 123 (189)
.+..++++||.|||+.|+++|+ ||. +|+.|+..+ +|||+.+|++||.+++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999 997 999999965 8999999999999999
No 55
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=2e-12 Score=95.15 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=47.3
Q ss_pred CCCCccCCCCCHHHHHHHHHHhh-cCC-cccccccc----CCCCCHHHHHHHHHHhh
Q 037352 73 LNPNIRRGDFTLEEDELIINLCR-AGS-KWTNIGLL----LPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 73 L~p~~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~----l~gRt~~q~k~rw~~~l 123 (189)
+.+..++++||.|||+.|+++|+ ||. +|+.|+.. |+|||+.+|++||++++
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999 997 99999997 59999999999999999
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.18 E-value=1.7e-11 Score=90.39 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=45.2
Q ss_pred CCCccCCCCCHHHHHHHHHHhh-cCC-cccccccc----CCCCCHHHHHHHHHHhh
Q 037352 74 NPNIRRGDFTLEEDELIINLCR-AGS-KWTNIGLL----LPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 74 ~p~~~~~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~----l~gRt~~q~k~rw~~~l 123 (189)
....++++||.|||+.|+++|+ ||. +|+.|+.. |+|||+.||++||.+++
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 3345688999999999999999 997 99999995 49999999999999999
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.10 E-value=6.4e-12 Score=88.65 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=43.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccC
Q 037352 22 RRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHL 73 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L 73 (189)
.+++||+|||++|.+++..||......|..||..|+ |||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 467899999999999999998532237999999996 899999999998763
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.3e-10 Score=74.57 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=42.5
Q ss_pred cCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 78 RRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..++||+||+.++++++. ||.+|..||..||+||..||..+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 346999999999999999 9999999999999999999999997654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=80.47 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=56.2
Q ss_pred CCCcccccccccCCCCccCCCCCHHHHHHHHHHhh-cCCccccccccC-----CCCCHHHHHHHHHHhhhhhhhhh
Q 037352 61 CGKSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLL-----PGRTHKDVMNYCKTSYMRNKMSN 130 (189)
Q Consensus 61 t~~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l-----~gRt~~q~k~rw~~~l~k~~~~~ 130 (189)
-..=+.++|.++|.+ ++||.||+..|++|++ ||.+|..|+..+ ++||..++|+||..+. ++-+..
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~-~~l~~~ 86 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC-AKLANV 86 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH-HHHHHH
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHH-HHHHHh
Confidence 345678899999876 8999999999999999 999999999988 5899999999999988 444433
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=4e-10 Score=75.77 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=47.1
Q ss_pred CccCCCCCHHHHHHHHHHhh-cC----CccccccccCCCCCHHHHHHHHHHhhhhhhhhhcCCCC
Q 037352 76 NIRRGDFTLEEDELIINLCR-AG----SKWTNIGLLLPGRTHKDVMNYCKTSYMRNKMSNRGVDL 135 (189)
Q Consensus 76 ~~~~~~WT~eEd~~L~~~v~-~g----~~W~~Ia~~l~gRt~~q~k~rw~~~l~k~~~~~~~~~~ 135 (189)
..+.+.||.|||.+|.+++. |+ .+|..||..| |||..+|++||..+. .......|..+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~-~d~~~~~G~vp 67 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK-DSVTCSPGMVS 67 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH-HSCCCCSCCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH-HhcCccCCCCC
Confidence 34567999999999999999 85 6799999998 999999999999888 43333444443
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.96 E-value=8e-11 Score=76.43 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=43.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCcccccc---ccCCccCCCcccccccccCC
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPR---GAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~---~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
-++++||+|||+.|+++|++||. +|..|+. ++ .+||..++.+||.++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence 47889999999999999999998 9999994 56 48999999999998654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=7.9e-10 Score=71.97 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=42.5
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCccccccccc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNH 72 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~ 72 (189)
...++||+||++++.+++.+||. +|..||..|+ +||..||..+|...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34689999999999999999998 9999999995 89999999998653
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.73 E-value=7.1e-09 Score=83.33 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=43.7
Q ss_pred cCCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 78 RRGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..++||+||+.++++++. ||++|..||+.|++||..||+++|+...
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 356999999999999999 9999999999999999999999999877
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.66 E-value=3e-09 Score=71.48 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccC
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHL 73 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L 73 (189)
.+.+.||.|||++|.+++.+|+....-.|..||..+| ||..+|+.||..+.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5678899999999999999998522227999999984 99999999998654
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.63 E-value=3.3e-08 Score=66.38 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHhh-cC----CccccccccCCCCCHHHHHHHHHHhh
Q 037352 79 RGDFTLEEDELIINLCR-AG----SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~g----~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
...||.+|+.+|.+++. |+ .+|..||..|||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45899999999999998 86 46999999999999999999998877
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.54 E-value=1.4e-08 Score=68.19 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=44.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCC
Q 037352 22 RRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
....||.+|+.+|.+++..|+....-+|..||..|| |||..+|..||..++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 346799999999999999997633337999999996 8999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.47 E-value=1.7e-08 Score=65.22 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC-----CCCCcccccc-ccCCccCCCcccccccccCC
Q 037352 23 RGFWTGEEDERLKSFILLNGEE-----GGWNWEDVPR-GAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~-----~~~~W~~Ia~-~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
|.+||+|||+.|.++|..|... +.--|..+|+ .+ +++|-.+|++||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 5689999999999999999321 2227999999 67 58999999999998874
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.45 E-value=1.2e-07 Score=61.14 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHhh-c--------CCc-cccccc-cCCCCCHHHHHHHHHHhh
Q 037352 79 RGDFTLEEDELIINLCR-A--------GSK-WTNIGL-LLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~--------g~~-W~~Ia~-~l~gRt~~q~k~rw~~~l 123 (189)
+.+||.|||..|++.|. + |+. |.+++. .+|++|-.++|+||...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 56899999999999998 7 444 999999 899999999999998776
No 69
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=8.1e-08 Score=85.17 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 80 GDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 80 ~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..||.+|-.++++++. ||.+|..||..++.||..||+++|...-
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4899999999999999 9999999999999999999999997654
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.43 E-value=3.4e-08 Score=79.35 Aligned_cols=49 Identities=16% Similarity=0.160 Sum_probs=45.0
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCC
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
...++||+||++++++++.+||. +|..||..|| +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 45779999999999999999998 9999999997 8999999999988754
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.28 E-value=3.6e-07 Score=60.99 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHhh-cCC----ccccccccCCCCCHHHHHHHHH
Q 037352 79 RGDFTLEEDELIINLCR-AGS----KWTNIGLLLPGRTHKDVMNYCK 120 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~g~----~W~~Ia~~l~gRt~~q~k~rw~ 120 (189)
.++||.+|+++|.++.. |+. +|..||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 45899999999999998 854 6999999999999999999884
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.20 E-value=2.3e-07 Score=61.87 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCccccccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWF 70 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~ 70 (189)
.+.||.+|+++|.+++..|+....-.|.+||..|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 45799999999999999997744447999999996 899999999986
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.19 E-value=1.4e-06 Score=60.20 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHhh-cCC---ccccccccCCCCCHHHHHHHHHHhh
Q 037352 81 DFTLEEDELIINLCR-AGS---KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~-~g~---~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
-||.|||..||...+ .|. .|..||+.|.+|+.+||++||+.++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 799999999999999 776 7999999999999999999999988
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.49 E-value=2.1e-07 Score=61.04 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHhh-cCC---ccccccccCCCCCHHHHHHHHHHhh
Q 037352 81 DFTLEEDELIINLCR-AGS---KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~-~g~---~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
-||.|||..||..++ .|. .|..||..| +||.+||.+||..++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 699999999999999 777 799999999 999999999999887
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=3.6e-06 Score=54.82 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCccCCCCCHHHHHHHHHHhh-cCCccccccc-cCCCCCHHHHHHHHHH
Q 037352 75 PNIRRGDFTLEEDELIINLCR-AGSKWTNIGL-LLPGRTHKDVMNYCKT 121 (189)
Q Consensus 75 p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~-~l~gRt~~q~k~rw~~ 121 (189)
|.+....||+||-.+..+++. ||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 567778999999999999999 9999999999 6899999999998864
No 76
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.87 E-value=1.6e-05 Score=55.48 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=44.9
Q ss_pred cccccCCCCccCCCCCHHHHHHHHHHhh-cCCccccccccCC-----CCCHHHHHHHHHHhh
Q 037352 68 RWFNHLNPNIRRGDFTLEEDELIINLCR-AGSKWTNIGLLLP-----GRTHKDVMNYCKTSY 123 (189)
Q Consensus 68 Rw~~~L~p~~~~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~-----gRt~~q~k~rw~~~l 123 (189)
.|..+|. ...||.||...|++|++ |+-+|..|+..+. +||-.++|.||..+.
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3445554 36899999999999999 9999999999763 799999999999988
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=5.1e-06 Score=54.10 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCcccCCCCHHHHHHHHHHHHHhCCCCCCCcccccc-ccCCccCCCccccccc
Q 037352 19 HMIRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPR-GAGLLRCGKSCHDRWF 70 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~-~~~~~Rt~~qc~~Rw~ 70 (189)
|.++...||+||-++..+++.+||. +|..|+. .|+ +|+..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 3378889999999999999999999 9999998 585 799999988764
No 78
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.76 E-value=1.1e-05 Score=67.77 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccc-------cccc-------------------------
Q 037352 24 GFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHD-------RWFN------------------------- 71 (189)
Q Consensus 24 g~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~-------Rw~~------------------------- 71 (189)
+.||..+...++.++.+||. . +|..||..|+ |+|...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr-~--~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~ 186 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGR-D--DIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIK 186 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCT-T--CHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-H--HHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999 6 9999999996 777766532 1100
Q ss_pred ------------------cCCCCccCCCCCHHHHHHHHHHhh-cCC----ccccccc------------cCCCCCHHHHH
Q 037352 72 ------------------HLNPNIRRGDFTLEEDELIINLCR-AGS----KWTNIGL------------LLPGRTHKDVM 116 (189)
Q Consensus 72 ------------------~L~p~~~~~~WT~eEd~~L~~~v~-~g~----~W~~Ia~------------~l~gRt~~q~k 116 (189)
+..+..+...||++||..||-++. ||- .|..|.. .+..||+.+|.
T Consensus 187 ~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~ 266 (304)
T 1ofc_X 187 KALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQ 266 (304)
T ss_dssp HHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHH
T ss_pred HHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 001223445899999999888887 764 5999962 34679999999
Q ss_pred HHHHHhh
Q 037352 117 NYCKTSY 123 (189)
Q Consensus 117 ~rw~~~l 123 (189)
.|.+.++
T Consensus 267 rRc~tLi 273 (304)
T 1ofc_X 267 RRCNTLI 273 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=3.8e-05 Score=53.88 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHh
Q 037352 79 RGDFTLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTS 122 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~ 122 (189)
...||+||..+..+++. ||.+|..||..||+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 46899999999999999 999999999999999999999988653
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.65 E-value=5.2e-05 Score=50.27 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHhh-cCCccccccc-cCCCCCHHHHHHHHHH
Q 037352 79 RGDFTLEEDELIINLCR-AGSKWTNIGL-LLPGRTHKDVMNYCKT 121 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~g~~W~~Ia~-~l~gRt~~q~k~rw~~ 121 (189)
...||++|-.+..+++. ||.+|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45899999999999999 9999999999 5999999999999874
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.62 E-value=9.7e-06 Score=71.93 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=42.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCccccccccc
Q 037352 22 RRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNH 72 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~ 72 (189)
...+||.+|-+++++++.+||. +|..||..|| +||..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4689999999999999999998 9999999998 79999999998764
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.59 E-value=1.2e-05 Score=56.19 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=42.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC----CccCCCccccccccc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG----LLRCGKSCHDRWFNH 72 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~----~~Rt~~qc~~Rw~~~ 72 (189)
|.-++||.||++.|.+|+.+||. .|..|+..+. ++||..++++||..+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 44588999999999999999998 9999999983 369999999998764
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.35 E-value=3.7e-05 Score=53.92 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCccccccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWF 70 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~ 70 (189)
...||+||.++..++...||. +|..||+.++ +||..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK----NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcC-CCCHHHHHHHHh
Confidence 467999999999999999998 9999999995 899999998774
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.32 E-value=4.5e-05 Score=50.61 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=38.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCcccccc-ccCCccCCCccccccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPR-GAGLLRCGKSCHDRWF 70 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~-~~~~~Rt~~qc~~Rw~ 70 (189)
-..||+||-++..+++.+||. +|..|+. .|+ +|+..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK----DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS----CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 347999999999999999999 9999999 585 899999988764
No 85
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.30 E-value=4.9e-05 Score=49.74 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccccCC
Q 037352 25 FWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFNHLN 74 (189)
Q Consensus 25 ~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~~L~ 74 (189)
.||.|||..|+..+++-|. ..-.|..||..+ +|++.|+..||+..+.
T Consensus 16 lWTReeDR~IL~~cq~~G~-s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGP-SSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999987 333799999988 4999999999987654
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.12 E-value=4.4e-05 Score=52.41 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=40.0
Q ss_pred ccCCCCHHHHHHHHHHHHHh------CCCCCCCcccccccc---CCccCCCccccccccc
Q 037352 22 RRGFWTGEEDERLKSFILLN------GEEGGWNWEDVPRGA---GLLRCGKSCHDRWFNH 72 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~------g~~~~~~W~~Ia~~~---~~~Rt~~qc~~Rw~~~ 72 (189)
+...||.+|...|+++...+ |......|..||..| |..||+.||+.+|.++
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46789999999999999753 211222699999985 5679999999999764
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.00013 Score=50.00 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHhh-c------C----CccccccccCC----CCCHHHHHHHHHHhh
Q 037352 79 RGDFTLEEDELIINLCR-A------G----SKWTNIGLLLP----GRTHKDVMNYCKTSY 123 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~------g----~~W~~Ia~~l~----gRt~~q~k~rw~~~l 123 (189)
...||.+|-..||+++. . + ..|..||..|. .||+.||+++|.++.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45899999999999986 3 1 14999999863 699999999999888
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.93 E-value=0.00011 Score=50.68 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccccccc
Q 037352 25 FWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHDRWFN 71 (189)
Q Consensus 25 ~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~Rw~~ 71 (189)
-||.|||..|+...++.|. ..-.|..||+.+| +|++.|+.+||+.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~-s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGA-QPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTS-CTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCC-ChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 5999999999999999987 3337999999997 7999999999975
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.80 E-value=0.011 Score=50.83 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccc-------ccccc------------------------
Q 037352 24 GFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHD-------RWFNH------------------------ 72 (189)
Q Consensus 24 g~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~-------Rw~~~------------------------ 72 (189)
+.||.-+=..++.++.+||. . +-..||..|++++|...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR-~--d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~ 200 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGR-N--SIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQ 200 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCT-T--CHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCH-h--HHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999998 6 78899999953555554431 11100
Q ss_pred ----------------C----CCC-ccCCCCCHHHHHHHHHHhh-cC----Ccccccccc------------CCCCCHHH
Q 037352 73 ----------------L----NPN-IRRGDFTLEEDELIINLCR-AG----SKWTNIGLL------------LPGRTHKD 114 (189)
Q Consensus 73 ----------------L----~p~-~~~~~WT~eEd~~L~~~v~-~g----~~W~~Ia~~------------l~gRt~~q 114 (189)
| .++ .+...||++||..||-++. || +.|..|-.. |..||...
T Consensus 201 ~~L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~E 280 (374)
T 2y9y_A 201 EALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVE 280 (374)
T ss_dssp HHHHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHH
T ss_pred HHHHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 0 011 1345899999999988887 65 459888332 45799999
Q ss_pred HHHHHHHhh
Q 037352 115 VMNYCKTSY 123 (189)
Q Consensus 115 ~k~rw~~~l 123 (189)
|..|.+.++
T Consensus 281 L~rRc~tLi 289 (374)
T 2y9y_A 281 LARRGNTLL 289 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.44 E-value=0.0035 Score=43.60 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=39.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccC----CccCCCccccccccc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAG----LLRCGKSCHDRWFNH 72 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~----~~Rt~~qc~~Rw~~~ 72 (189)
|+...||.||...|.+++..|+- .|--|+.... ..||-.+..+||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl----Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT----CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC----CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 44567999999999999999998 9999999863 257888888888654
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.15 E-value=0.082 Score=41.39 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=27.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 037352 23 RGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGA 56 (189)
Q Consensus 23 kg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~ 56 (189)
...||.+||..|+..|.+||- + +|..|-...
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~-g--~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGY-G--SWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCT-T--CHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCc-C--cHHHHHhCh
Confidence 456999999999999999997 7 999987753
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.98 E-value=0.2 Score=32.24 Aligned_cols=47 Identities=17% Similarity=0.030 Sum_probs=38.0
Q ss_pred ccCCCCCHHHHHHHHHHhh-cCCc---cccccccC--CCCCHHHHHHHHHHhh
Q 037352 77 IRRGDFTLEEDELIINLCR-AGSK---WTNIGLLL--PGRTHKDVMNYCKTSY 123 (189)
Q Consensus 77 ~~~~~WT~eEd~~L~~~v~-~g~~---W~~Ia~~l--~gRt~~q~k~rw~~~l 123 (189)
..+-.||+|.-+..+++|. +|.. +..|.+.| +|.|..+|+.+.+.+-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999 8865 67887765 7999999998876543
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.97 E-value=0.085 Score=43.45 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCccccccc
Q 037352 24 GFWTGEEDERLKSFILLNGEEGGWNWEDVPRG 55 (189)
Q Consensus 24 g~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~ 55 (189)
..|+.+||..|+..|.+||. | +|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGy-G--~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGY-G--SWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCT-T--CHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcC-C--cHHHHhcC
Confidence 45999999999999999999 8 99999875
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.45 E-value=0.34 Score=40.47 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHhh-cCC-ccccccccCCCCCHHHHHHHHHHhh
Q 037352 80 GDFTLEEDELIINLCR-AGS-KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 80 ~~WT~eEd~~L~~~v~-~g~-~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+.||..+...++.+.. ||. .|..||..|+|+|..+|+.++....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4799999999999999 986 5999999999999999987776666
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.66 E-value=0.1 Score=33.65 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=35.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCCccccccccCC-ccCCCccccccc
Q 037352 21 IRRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGL-LRCGKSCHDRWF 70 (189)
Q Consensus 21 lkkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~-~Rt~~qc~~Rw~ 70 (189)
..+-.||+|..+...++|+..|. ....+..|.+.|+. |-|..++..+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 56788999999999999999996 32347889888763 345555554433
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.77 E-value=0.45 Score=37.05 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=38.7
Q ss_pred cCCCCCHHHHHHHHHHhh-cC---Cccccccc--cCCCCCHHHHHHHHHHhh
Q 037352 78 RRGDFTLEEDELIINLCR-AG---SKWTNIGL--LLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 78 ~~~~WT~eEd~~L~~~v~-~g---~~W~~Ia~--~l~gRt~~q~k~rw~~~l 123 (189)
....||..|-..|+.++. || .+|..|+. .|.++|..+++..+..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVH 57 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 446899999999999999 99 57999986 478999999998777666
No 97
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=66.22 E-value=4.1 Score=30.90 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=20.1
Q ss_pred CCcccCCCCHHHHHHHH--------HHHHHhCC
Q 037352 19 HMIRRGFWTGEEDERLK--------SFILLNGE 43 (189)
Q Consensus 19 ~~lkkg~WT~eED~~L~--------~~v~~~g~ 43 (189)
|.-..|-||+++|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 34678999999998875 57888886
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=63.92 E-value=8.1 Score=31.56 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHhh-cC---Cccccccc--cCCCCCHHHHHHHHHHhh
Q 037352 79 RGDFTLEEDELIINLCR-AG---SKWTNIGL--LLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~-~g---~~W~~Ia~--~l~gRt~~q~k~rw~~~l 123 (189)
+++||.-|-..|++++. || .+|..|+. .|+.++...++.-++.++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 57899999999999999 98 47999976 678999999888887655
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=62.82 E-value=5.3 Score=34.22 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=28.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 037352 22 RRGFWTGEEDERLKSFILLNGEEGGWNWEDVPRGA 56 (189)
Q Consensus 22 kkg~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~ 56 (189)
++..||.+||..|+-++.+||-...-+|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45689999999999999999974222899997765
No 100
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.20 E-value=7.7 Score=23.67 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=30.1
Q ss_pred HHHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 85 EEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 85 eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+.+..++.++- .|-.+.+||..+ |-+...|+.+....+
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 34455566665 899999999999 889999999887766
No 101
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=48.02 E-value=23 Score=25.64 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=23.8
Q ss_pred cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 96 AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 96 ~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|-...+||..+ |-|...|+++....+
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLAL 176 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 477899999999 889999999988776
No 102
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.87 E-value=15 Score=24.02 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 86 EDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 86 Ed~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.+..++.++. .|-.-.+||..| |-+...|+.+....+
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3445556655 788899999999 899999999887766
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=44.51 E-value=3.4 Score=29.68 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=32.6
Q ss_pred CccccccccCCccCC----CcccccccccCCCCccCCCCCHHHHHHHHHHhh
Q 037352 48 NWEDVPRGAGLLRCG----KSCHDRWFNHLNPNIRRGDFTLEEDELIINLCR 95 (189)
Q Consensus 48 ~W~~Ia~~~~~~Rt~----~qc~~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~ 95 (189)
.|..||..||...+. ...+..|..+|.|- ...+++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 899999999864433 34577888888763 2377888888877664
No 104
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=37.86 E-value=5.3 Score=27.69 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCC----CCccccccccCCccC----CCcccccccccCCC
Q 037352 32 ERLKSFILLNGEEGG----WNWEDVPRGAGLLRC----GKSCHDRWFNHLNP 75 (189)
Q Consensus 32 ~~L~~~v~~~g~~~~----~~W~~Ia~~~~~~Rt----~~qc~~Rw~~~L~p 75 (189)
-.|-.+|...|-... -.|..||..||...+ +.+++..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 456667766642110 189999999985332 35677788888876
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.75 E-value=32 Score=20.92 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=24.0
Q ss_pred cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 96 AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 96 ~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|-.+.+||..+ |-|...|+.+....+
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 377899999999 899999999988777
No 106
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.47 E-value=10 Score=26.65 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHhh-cC--------CccccccccCCCCCHHHHHHHHHHhh
Q 037352 89 LIINLCR-AG--------SKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g--------~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|..+|. .| +.|..||..|.--....++..|..+|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3666666 55 36999999774333788999998887
No 107
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=36.01 E-value=23 Score=24.85 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHhh-cC--------CccccccccCCCCC----HHHHHHHHHHhh
Q 037352 89 LIINLCR-AG--------SKWTNIGLLLPGRT----HKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g--------~~W~~Ia~~l~gRt----~~q~k~rw~~~l 123 (189)
.|..+|. .| +.|.+|+..|.--. ..+++..|..+|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L 91 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV 91 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 3666666 55 36999999873222 567999998877
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=35.42 E-value=3.2 Score=29.87 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCC----CCCccccccccCCccC----CCcccccccccCCC
Q 037352 32 ERLKSFILLNGEEG----GWNWEDVPRGAGLLRC----GKSCHDRWFNHLNP 75 (189)
Q Consensus 32 ~~L~~~v~~~g~~~----~~~W~~Ia~~~~~~Rt----~~qc~~Rw~~~L~p 75 (189)
-.|-.+|...|-.. .-.|..||..||...+ +.+++..|.++|.|
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35667777766211 0189999999985432 23456677777765
No 109
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.76 E-value=35 Score=21.07 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhh----cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 82 FTLEEDELIINLCR----AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 82 WT~eEd~~L~~~v~----~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.++.|-++|.-.+- .|-.+.+||..+ |-|...|+.+....+
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKAL 55 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 34555544444333 467899999999 899999999887777
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=34.68 E-value=17 Score=25.87 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=25.7
Q ss_pred HHHHhh-cCC--------ccccccccCCCCCHHHHHHHHHHhh
Q 037352 90 IINLCR-AGS--------KWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 90 L~~~v~-~g~--------~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
|..+|. .|+ .|.+|+..|.--....++..|..+|
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L 95 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 95 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHH
Confidence 566666 553 5999999773333899999999888
No 111
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=34.60 E-value=27 Score=23.86 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=24.4
Q ss_pred HHHHHhh-cC--------CccccccccCCCCC----HHHHHHHHHHhh
Q 037352 89 LIINLCR-AG--------SKWTNIGLLLPGRT----HKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g--------~~W~~Ia~~l~gRt----~~q~k~rw~~~l 123 (189)
.|..+|. .| +.|.+||..|.--. ..+++..|..+|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 3556666 55 36999999883322 468888888877
No 112
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.56 E-value=12 Score=22.97 Aligned_cols=29 Identities=7% Similarity=-0.068 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccccccCCccC
Q 037352 29 EEDERLKSFILLNGEEGGWNWEDVPRGAGLLRC 61 (189)
Q Consensus 29 eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt 61 (189)
-|.+.|.+++..+|. +....|..+|..|+
T Consensus 19 ~E~~~i~~aL~~~~g----n~~~aA~~LGisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYDY----DLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTTT----CHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhCC----CHHHHHHHHCcCHH
Confidence 477888888988886 88999999986553
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=33.98 E-value=5.3 Score=27.05 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCC----CCccccccccCCccC---CCcccccccccCC
Q 037352 33 RLKSFILLNGEEGG----WNWEDVPRGAGLLRC---GKSCHDRWFNHLN 74 (189)
Q Consensus 33 ~L~~~v~~~g~~~~----~~W~~Ia~~~~~~Rt---~~qc~~Rw~~~L~ 74 (189)
.|-.+|...|-... -.|..||..||...+ +.+++..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 46666666642110 189999999985432 2245566666654
No 114
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.73 E-value=36 Score=24.70 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=23.8
Q ss_pred cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 96 AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 96 ~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|-...+||..+ |-+...|+++....+
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 477899999999 899999999988766
No 115
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.34 E-value=43 Score=19.55 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 87 DELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 87 d~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
+..++.++..|-.-.+||..| |-+...|+.+....+
T Consensus 3 e~~vl~l~~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 3 ERQVLKLIDEGYTNHGISEKL-HISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHHHTSCCSHHHHHHT-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 344555544777889999999 889999999887776
No 116
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.56 E-value=58 Score=17.43 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHH
Q 037352 81 DFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYC 119 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw 119 (189)
..+.++-..++.++..|....+||+.| |-+...|....
T Consensus 5 ~l~~~~~~~i~~~~~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 345666666666655677789999998 78877776543
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.81 E-value=33 Score=24.21 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHhh-cCC--------ccccccccCCCC--C--HHHHHHHHHHhh
Q 037352 89 LIINLCR-AGS--------KWTNIGLLLPGR--T--HKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g~--------~W~~Ia~~l~gR--t--~~q~k~rw~~~l 123 (189)
.|..+|. .|+ .|.+|+..|.-- + ...++..|..+|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 3566666 553 699999987322 2 358899898877
No 118
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.14 E-value=54 Score=22.47 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=28.9
Q ss_pred HHHHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 86 EDELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 86 Ed~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.+..++.++. .|-...+||..+ |-|...|+.+....+
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTG 66 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3344555555 788999999999 889999998887765
No 119
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.79 E-value=57 Score=20.05 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 82 FTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 82 WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|+.|-+.| .++..|-.-.+||..+ |-+...|+.+....+
T Consensus 17 L~~~e~~vl-~l~~~g~s~~eIA~~l-~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVL-SAVVAGLPNKSIAYDL-DISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHH-HHHTTTCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 455554444 4444677889999999 889999999887766
No 120
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.72 E-value=35 Score=24.12 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHhh-cCC--------ccccccccCCCCC----HHHHHHHHHHhh
Q 037352 89 LIINLCR-AGS--------KWTNIGLLLPGRT----HKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g~--------~W~~Ia~~l~gRt----~~q~k~rw~~~l 123 (189)
.|..+|. .|+ .|.+|+..|.--+ ..+++..|..+|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L 102 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYL 102 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 3566666 553 6999999873222 468899998887
No 121
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=27.16 E-value=53 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHHHHHhh-cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 88 ELIINLCR-AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 88 ~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..++.++- .|-...+||..| |-|...|+.+....+
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~ 228 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKAL 228 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 33444444 578899999999 899999999887766
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.51 E-value=57 Score=20.75 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 81 DFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..|+.|-+.|. ++..|-.-.+||..| |-+...|+.+....+
T Consensus 21 ~Lt~~e~~vl~-l~~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILK-LIAQGLPNKMIARRL-DITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHH-HHTTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 46666665544 444677889999999 889999999887766
No 123
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=24.39 E-value=49 Score=22.66 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhh-cCCccccccccCCCCCHHHHHH
Q 037352 83 TLEEDELIINLCR-AGSKWTNIGLLLPGRTHKDVMN 117 (189)
Q Consensus 83 T~eEd~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~ 117 (189)
+..-+..|..+.. .|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 5555666777777 899999999999 777766544
No 124
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.08 E-value=32 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccccccCCccC
Q 037352 29 EEDERLKSFILLNGEEGGWNWEDVPRGAGLLRC 61 (189)
Q Consensus 29 eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt 61 (189)
-|.+.|..++..+|. +-...|..+|..|+
T Consensus 51 ~E~~~i~~aL~~~~g----n~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQG----HKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTTT----CTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhCC----CHHHHHHHHCcCHH
Confidence 467788888888886 78999999986554
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.75 E-value=50 Score=22.90 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.9
Q ss_pred cCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 96 AGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 96 ~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
.|-...+||..| |-|...|+++....+
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 688899999999 899999999887766
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.28 E-value=77 Score=20.71 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 81 DFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..|+.|-++|.- +..|-.-.+||..| |-+...|+.+....+
T Consensus 27 ~Lt~~e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGL-LSEGLTNKQIADRM-FLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHH-HHTTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 466666655554 35677789999999 889999999988777
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.15 E-value=84 Score=20.50 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 79 RGDFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 79 ~~~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
....|+.|-++|.-+. .|..-.+||..| |-+...|+.+....+
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-KGFTNQEIADAL-HLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3467887776665444 777889999999 899999999988777
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.12 E-value=1.4e+02 Score=20.20 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCccccccccCCccCCCcccc---cccccC--CCCccCCCCCHHHHHHHHHHhhc-C
Q 037352 24 GFWTGEEDERLKSFILLNGEEGGWNWEDVPRGAGLLRCGKSCHD---RWFNHL--NPNIRRGDFTLEEDELIINLCRA-G 97 (189)
Q Consensus 24 g~WT~eED~~L~~~v~~~g~~~~~~W~~Ia~~~~~~Rt~~qc~~---Rw~~~L--~p~~~~~~WT~eEd~~L~~~v~~-g 97 (189)
...|.++-..++.++ .-|. .-..||..+|. +...++. +|..+- .........|.+++..|+.+... +
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~----s~~~ia~~lgi--s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~ 77 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNV----SLHEMSRKISR--SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSC 77 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTC----CHHHHHHHHTC--CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHHH-HcCC----CHHHHHHHHCc--CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 457888888887776 3465 67899999874 3333321 222111 11112235788888888877443 3
Q ss_pred CccccccccCCC--CCHHHHHHH
Q 037352 98 SKWTNIGLLLPG--RTHKDVMNY 118 (189)
Q Consensus 98 ~~W~~Ia~~l~g--Rt~~q~k~r 118 (189)
-.=.+|+..| | -+...|...
T Consensus 78 ~s~~~i~~~l-g~~~s~~tV~r~ 99 (141)
T 1u78_A 78 KTARDIRNEL-QLSASKRTILNV 99 (141)
T ss_dssp CCHHHHHHHT-TCCSCHHHHHHH
T ss_pred CCHHHHHHHH-CCCccHHHHHHH
Confidence 3345677777 4 455555543
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.08 E-value=76 Score=19.04 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 80 GDFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 80 ~~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
...|+.|-+.|.- +..|..-.+||..+ |-+...|+.+.....
T Consensus 10 ~~L~~~e~~il~~-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKREREVFEL-LVQDKTTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHHHHHHH-HTTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3467766655544 44677889999999 889999999887766
No 130
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.66 E-value=68 Score=20.65 Aligned_cols=41 Identities=22% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHhh
Q 037352 81 DFTLEEDELIINLCRAGSKWTNIGLLLPGRTHKDVMNYCKTSY 123 (189)
Q Consensus 81 ~WT~eEd~~L~~~v~~g~~W~~Ia~~l~gRt~~q~k~rw~~~l 123 (189)
..|+.|-+.|. ++..|-.-.+||..| |-+...|+.+....+
T Consensus 29 ~Lt~~e~~vl~-l~~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 29 MLTEREMEILL-LIAKGYSNQEIASAS-HITIKTVKTHVSNIL 69 (91)
T ss_dssp GCCSHHHHHHH-HHHTTCCTTHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 35666655554 444688889999999 889999999887766
No 131
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.44 E-value=53 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=21.5
Q ss_pred HHHHHHhh-cCCccccccccCCCCCHHHHHH
Q 037352 88 ELIINLCR-AGSKWTNIGLLLPGRTHKDVMN 117 (189)
Q Consensus 88 ~~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~ 117 (189)
..|..+.. .|..|..+|..| |=+..+|..
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 34555666 899999999999 766666543
No 132
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.33 E-value=58 Score=23.65 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHhh-cCC--------ccccccccC--CCC---CHHHHHHHHHHhh
Q 037352 89 LIINLCR-AGS--------KWTNIGLLL--PGR---THKDVMNYCKTSY 123 (189)
Q Consensus 89 ~L~~~v~-~g~--------~W~~Ia~~l--~gR---t~~q~k~rw~~~l 123 (189)
.|..+|. .|+ .|.+|+..| +.. ....++..|..+|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL 116 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH
Confidence 3666666 554 699999987 332 2568999998888
No 133
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.21 E-value=61 Score=22.56 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=20.5
Q ss_pred HHHHHhh-cCCccccccccCCCCCHHHHHH
Q 037352 89 LIINLCR-AGSKWTNIGLLLPGRTHKDVMN 117 (189)
Q Consensus 89 ~L~~~v~-~g~~W~~Ia~~l~gRt~~q~k~ 117 (189)
.|..+.. .|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3445567 899999999998 766665543
No 134
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=20.77 E-value=58 Score=24.55 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.4
Q ss_pred CCccCCCCCHHHHHHHH
Q 037352 75 PNIRRGDFTLEEDELII 91 (189)
Q Consensus 75 p~~~~~~WT~eEd~~L~ 91 (189)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55678999999998876
Done!