BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037353
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S7X|A Chain A, Unassembled Washington University Polyomavirus Vp1
Pentamer R198k Mutant
pdb|3S7X|B Chain B, Unassembled Washington University Polyomavirus Vp1
Pentamer R198k Mutant
pdb|3S7X|C Chain C, Unassembled Washington University Polyomavirus Vp1
Pentamer R198k Mutant
pdb|3S7X|D Chain D, Unassembled Washington University Polyomavirus Vp1
Pentamer R198k Mutant
pdb|3S7X|E Chain E, Unassembled Washington University Polyomavirus Vp1
Pentamer R198k Mutant
Length = 267
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 54 EDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGV 105
E + SWV D +D C + + A T V+ S N T LL N IG+
Sbjct: 175 EKYSIESWVADPSRNDNCRYFGRMVGGAATPPVVSFSNNSTIPLLDENGIGI 226
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 69 DC-CD-DWEGVECNATTRRVMQLSLNGTRMLLC 99
DC CD DW G CN TTR +S NG LLC
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNG---LLC 575
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 69 DC-CD-DWEGVECNATTRRVMQLSLNGTRMLLC 99
DC CD DW G CN TTR +S NG LLC
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNG---LLC 575
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 69 DC-CD-DWEGVECNATTRRVMQLSLNGTRMLLC 99
DC CD DW G CN TTR +S NG LLC
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNG---LLC 575
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 69 DC-CD-DWEGVECNATTRRVMQLSLNGTRMLLC 99
DC CD DW G CN TTR +S NG LLC
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNG---LLC 575
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 69 DC-CD-DWEGVECNATTRRVMQLSLNGTRMLLC 99
DC CD DW G CN TTR +S NG LLC
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNG---LLC 575
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 31 LQTERTALLELKSFFISISDREYEDVILTSWVD 63
+ T R A L LK ++D+ Y++VI S+VD
Sbjct: 485 MGTHREADLSLKRVKTLLNDKGYQEVITYSFVD 517
>pdb|3S7V|A Chain A, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|B Chain B, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|C Chain C, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|D Chain D, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|E Chain E, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|F Chain F, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|G Chain G, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|H Chain H, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|I Chain I, Unassembled Ki Polyomavirus Vp1 Pentamer
pdb|3S7V|J Chain J, Unassembled Ki Polyomavirus Vp1 Pentamer
Length = 277
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 60 SWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGV 105
SW D +D C + V A T V+ N T LL N IG+
Sbjct: 191 SWAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGI 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,831,260
Number of Sequences: 62578
Number of extensions: 96819
Number of successful extensions: 172
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 8
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)