Query 037353
Match_columns 110
No_of_seqs 113 out of 1039
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 98.7 6.5E-08 2.2E-12 72.1 7.4 65 29-104 2-73 (313)
2 3rgz_A Protein brassinosteroid 98.6 4.8E-08 1.7E-12 80.8 5.0 60 27-99 6-65 (768)
3 4eco_A Uncharacterized protein 98.1 1.6E-06 5.5E-11 70.4 4.4 71 29-104 26-102 (636)
4 4ecn_A Leucine-rich repeat pro 98.0 4.2E-06 1.4E-10 71.3 4.7 63 28-104 264-344 (876)
5 4fcg_A Uncharacterized protein 95.9 0.0017 5.7E-08 48.4 0.4 68 28-104 22-101 (328)
6 3e6j_A Variable lymphocyte rec 64.3 4.7 0.00016 27.8 2.8 35 68-103 16-60 (229)
7 2o6q_A Variable lymphocyte rec 50.1 4.4 0.00015 28.4 0.6 27 69-97 3-29 (270)
8 2o6s_A Variable lymphocyte rec 43.4 13 0.00045 24.7 2.2 29 70-99 6-43 (208)
9 2ifg_A High affinity nerve gro 37.8 18 0.00062 26.0 2.3 14 86-99 33-47 (347)
10 2o6r_A Variable lymphocyte rec 37.7 19 0.00063 23.3 2.2 27 73-99 8-43 (177)
11 2z81_A CD282 antigen, TOLL-lik 35.9 16 0.00054 27.9 1.8 15 85-99 27-41 (549)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.65 E-value=6.5e-08 Score=72.07 Aligned_cols=65 Identities=32% Similarity=0.674 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCC--CcceeeCCCC--CCeEEEEecCCCCcc--C-CC
Q 037353 29 ACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD--WEGVECNATT--RRVMQLSLNGTRMLL--C-HN 101 (110)
Q Consensus 29 ~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~--W~GV~C~~~~--~rVi~L~Ls~~~Lsg--~-~~ 101 (110)
.|.+.|+.+|+++|..+.++. .+.+|..+ .+|| + |.||.|+..+ ++|+.|+|++++++| . |+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~~---~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~ 70 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLPT---TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-------GGTTCCTT---SCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-------cccCCCCC---CCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh
Confidence 588899999999999986543 57899765 5799 7 9999998644 789999999999998 6 66
Q ss_pred CCc
Q 037353 102 DIG 104 (110)
Q Consensus 102 ~ig 104 (110)
.++
T Consensus 71 ~l~ 73 (313)
T 1ogq_A 71 SLA 73 (313)
T ss_dssp GGG
T ss_pred hHh
Confidence 553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.57 E-value=4.8e-08 Score=80.77 Aligned_cols=60 Identities=20% Similarity=0.492 Sum_probs=48.9
Q ss_pred CccCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCCCcceeeCCCCCCeEEEEecCCCCccC
Q 037353 27 DKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLC 99 (110)
Q Consensus 27 ~~~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~W~GV~C~~~~~rVi~L~Ls~~~Lsg~ 99 (110)
+....+.|+.+|++||+.+.++. .+.+|+.+ .+|| +|.||.|+ .+||+.|+|+++++.|.
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-------~l~~W~~~---~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-------LLPDWSSN---KNPC-TFDGVTCR--DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-------SSTTCCTT---SCGG-GSTTEEEE--TTEEEEEECTTSCCCEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-------cccCCCCC---CCCc-CCcceEEC--CCcEEEEECCCCCcCCc
Confidence 34456789999999999987552 57899854 5899 99999998 48999999999998873
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.14 E-value=1.6e-06 Score=70.44 Aligned_cols=71 Identities=24% Similarity=0.221 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHHHhhccCCCcc--ccccccCCCCCCCCCCCCCCCCC---cceeeCCCCCCeEEEEecCCCCccC-CCC
Q 037353 29 ACLQTERTALLELKSFFISISDR--EYEDVILTSWVDDGMPSDCCDDW---EGVECNATTRRVMQLSLNGTRMLLC-HND 102 (110)
Q Consensus 29 ~~~~~d~~aLl~~k~~l~~~~~~--~~~~~~l~~W~~~~~~~~~C~~W---~GV~C~~~~~rVi~L~Ls~~~Lsg~-~~~ 102 (110)
+....|+.||.+++..+.++.-. +.+.....+|+.. .++| .| .||.|+.. +||++|+|++++++|. |+.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcc-cccCCCCeEEcCC-CCEEEEEecCcccCCcCChH
Confidence 34456899999999988643200 0000123479875 5899 99 99999864 8999999999999999 988
Q ss_pred Cc
Q 037353 103 IG 104 (110)
Q Consensus 103 ig 104 (110)
|+
T Consensus 101 l~ 102 (636)
T 4eco_A 101 IG 102 (636)
T ss_dssp GG
T ss_pred Hh
Confidence 75
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.02 E-value=4.2e-06 Score=71.29 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=49.5
Q ss_pred ccCChHHHHHHHHHHhhccCCCccccccccCCCCCCCC---CCCCC--CCCC------------cceeeCCCCCCeEEEE
Q 037353 28 KACLQTERTALLELKSFFISISDREYEDVILTSWVDDG---MPSDC--CDDW------------EGVECNATTRRVMQLS 90 (110)
Q Consensus 28 ~~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~---~~~~~--C~~W------------~GV~C~~~~~rVi~L~ 90 (110)
.+....|+.+|++||..+.++ +|+.+. . .+| | +| .||.|+. .+||++|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~-~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~ 329 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----------NWRYYSGTIN-NTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS 329 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCS-SCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----------CCCcCCCccc-ccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence 345567999999999988432 676531 0 245 9 99 9999986 58999999
Q ss_pred ecCCCCccC-CCCCc
Q 037353 91 LNGTRMLLC-HNDIG 104 (110)
Q Consensus 91 Ls~~~Lsg~-~~~ig 104 (110)
|++++|+|. |+.|+
T Consensus 330 Ls~~~L~G~ip~~l~ 344 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIG 344 (876)
T ss_dssp CTTTCCEEEECGGGG
T ss_pred CccCCCCCcCchHHh
Confidence 999999999 98875
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=95.87 E-value=0.0017 Score=48.43 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=47.5
Q ss_pred ccCChHHHHHHHHHHhhcc-CCCccccccccCCCCC---CCCCCCCCCCCCcceeeCC--------CCCCeEEEEecCCC
Q 037353 28 KACLQTERTALLELKSFFI-SISDREYEDVILTSWV---DDGMPSDCCDDWEGVECNA--------TTRRVMQLSLNGTR 95 (110)
Q Consensus 28 ~~~~~~d~~aLl~~k~~l~-~~~~~~~~~~~l~~W~---~~~~~~~~C~~W~GV~C~~--------~~~rVi~L~Ls~~~ 95 (110)
.....+++.+|++||..+. ++. ..+..|. ... .++| .|.|+.|+. ...+|+.|+|++++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~~~~--~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~ 92 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSNN--PQIE-TRTGRALKATADLLEDATQPGRVALELRSVP 92 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHTTTC--TTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred cccCchHHHHHHHHHHhccCCch------hhhhhhccccccc--cccc-ccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence 4466788999999999874 443 3456784 222 5789 999999942 23579999999999
Q ss_pred CccCCCCCc
Q 037353 96 MLLCHNDIG 104 (110)
Q Consensus 96 Lsg~~~~ig 104 (110)
++.-|+.++
T Consensus 93 l~~lp~~l~ 101 (328)
T 4fcg_A 93 LPQFPDQAF 101 (328)
T ss_dssp CSSCCSCGG
T ss_pred chhcChhhh
Confidence 872266553
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=64.34 E-value=4.7 Score=27.77 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCCCCCCcceeeCCC---------CCCeEEEEecCCCCccC-CCCC
Q 037353 68 SDCCDDWEGVECNAT---------TRRVMQLSLNGTRMLLC-HNDI 103 (110)
Q Consensus 68 ~~~C~~W~GV~C~~~---------~~rVi~L~Ls~~~Lsg~-~~~i 103 (110)
...| .|.+|.|... ...+..|+|++|.+++- +..+
T Consensus 16 ~~~C-s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~ 60 (229)
T 3e6j_A 16 QCSC-SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVF 60 (229)
T ss_dssp TCEE-ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEE-eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHh
Confidence 4689 9999999642 12577899999998877 5544
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=50.05 E-value=4.4 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=14.3
Q ss_pred CCCCCCcceeeCCCCCCeEEEEecCCCCc
Q 037353 69 DCCDDWEGVECNATTRRVMQLSLNGTRML 97 (110)
Q Consensus 69 ~~C~~W~GV~C~~~~~rVi~L~Ls~~~Ls 97 (110)
+.| .|.|+.|.-. ..+..+++++++++
T Consensus 3 ~~C-~~~~~~C~c~-~~~~~l~~~~~~l~ 29 (270)
T 2o6q_A 3 ALC-KKDGGVCSCN-NNKNSVDCSSKKLT 29 (270)
T ss_dssp CCB-GGGTCSBEEE-TTTTEEECTTSCCS
T ss_pred ccC-CCCCCCCEeC-CCCCEEEccCCCCC
Confidence 567 7877777421 12334445554444
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=43.44 E-value=13 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=19.7
Q ss_pred CCCCCcceeeCCC---------CCCeEEEEecCCCCccC
Q 037353 70 CCDDWEGVECNAT---------TRRVMQLSLNGTRMLLC 99 (110)
Q Consensus 70 ~C~~W~GV~C~~~---------~~rVi~L~Ls~~~Lsg~ 99 (110)
.| .|.+|.|... ..++..|+++++++++-
T Consensus 6 ~C-~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~ 43 (208)
T 2o6s_A 6 SC-SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSL 43 (208)
T ss_dssp EE-ETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCC
T ss_pred EE-CCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcC
Confidence 36 7888888542 12477888888887755
No 9
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=37.76 E-value=18 Score=25.98 Aligned_cols=14 Identities=7% Similarity=0.180 Sum_probs=7.3
Q ss_pred eEEEEecC-CCCccC
Q 037353 86 VMQLSLNG-TRMLLC 99 (110)
Q Consensus 86 Vi~L~Ls~-~~Lsg~ 99 (110)
+..|+|++ |.+++-
T Consensus 33 L~~L~l~~~n~l~~~ 47 (347)
T 2ifg_A 33 LTELYIENQQHLQHL 47 (347)
T ss_dssp CSEEECCSCSSCCEE
T ss_pred eeEEEccCCCCCCCc
Confidence 55556654 555443
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=37.75 E-value=19 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=14.8
Q ss_pred CCcceeeCCC---------CCCeEEEEecCCCCccC
Q 037353 73 DWEGVECNAT---------TRRVMQLSLNGTRMLLC 99 (110)
Q Consensus 73 ~W~GV~C~~~---------~~rVi~L~Ls~~~Lsg~ 99 (110)
+|.++.|... ...+..|+++++++++-
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~ 43 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSL 43 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCC
T ss_pred CCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEe
Confidence 5666666431 12455666666666544
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=35.93 E-value=16 Score=27.93 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=10.4
Q ss_pred CeEEEEecCCCCccC
Q 037353 85 RVMQLSLNGTRMLLC 99 (110)
Q Consensus 85 rVi~L~Ls~~~Lsg~ 99 (110)
.+..|+|+++++++-
T Consensus 27 ~L~~L~Ls~n~l~~~ 41 (549)
T 2z81_A 27 AMKSLDLSFNKITYI 41 (549)
T ss_dssp TCCEEECCSSCCCEE
T ss_pred CccEEECcCCccCcc
Confidence 466777777777655
Done!