BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037354
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DKR|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DLT|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYI|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3DYV|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
pdb|3E1G|A Chain A, Snapshots Of Esterase D From Lactobacillus Rhamnosus:
Insights Into A Rotation Driven Catalytic Mechanism
Length = 251
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 83/208 (39%), Gaps = 23/208 (11%)
Query: 59 SNYRIVLVHGF-GSSKEMNFPASQELIESLGIYFVLYDRAGYGESDPNPRRTVKSE---- 113
++ +VL+H + GS +MNF A G+Y L+ +G+G +P T +
Sbjct: 21 TDTGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLF--SGHGTVEPLDILTKGNPDIWW 78
Query: 114 AFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIVPTINYEWPSLPQS 173
A +A +K +V G+S+G L+ +P AG P + + +P
Sbjct: 79 AESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF 138
Query: 174 LIRTDYRRRLI---QWSLWIAKHIPGLLYWWISQKVVPSTSVLERNPVYFSDRDIEVLKT 230
L +Y RL S I ++PG L I Q + D+ ++K
Sbjct: 139 LKYAEYMNRLAGKSDESTQILAYLPGQL-AAIDQFATTVAA------------DLNLVKQ 185
Query: 231 TKGFPMLTQDKLQDRSVFYALRGDVVAA 258
QD+L D + Y LR ++ A
Sbjct: 186 PTFIGQAGQDELVDGRLAYQLRDALINA 213
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 64 VLVHGF-GSSKEMNFPASQELIESLGIYFVLYDRAGYGESDPNPRRTV----KSEAFDIV 118
+++HGF G S+E + A QE + +G+ + D G+G+SD + +V
Sbjct: 31 IIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKWLTNILAVV 90
Query: 119 ELADQLQLGSKFYVIGVSIG 138
+ A +L + Y+ G S G
Sbjct: 91 DYAKKLDFVTDIYMAGHSQG 110
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 58 ESNYRIVLVHGFG--SSKEMNFPASQELIESLGIYFVLYDRAGYGESDPNPRRTVKSE-- 113
+ + +VL+HG G ++ NF + + + G +L D G+G+SD +S+
Sbjct: 34 QGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLN 93
Query: 114 AFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALI 159
A + + DQL + +K +++G S+G + + + P R+ + L+
Sbjct: 94 ARILKSVVDQLDI-AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLM 138
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 DGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGES 102
DG + +++ G K ++ HG+ +M + E + S G + +DR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWPLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 103 D-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVA 157
D P + A DI +L + L L + ++G S+G +YI R+AG+
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGG---GDVARYIARHGSARVAGLV 116
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ V I + P PQ +
Sbjct: 117 LLGAVTPIFGQKPDYPQGV 135
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 DGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGES 102
DG + +++ G K ++ HG+ +M + E + S G + +DR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWPLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 103 D-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVA 157
D P + A DI +L + L L + ++G S+G +YI R+AG+
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGG---GDVARYIARHGSARVAGLV 116
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ V + + P PQ +
Sbjct: 117 LLGAVTPLFGQKPDYPQGV 135
>pdb|3R0V|A Chain A, The Crystal Structure Of An AlphaBETA HYDROLASE FROM
SPHAEROBACTER Thermophilus Dsm 20745
Length = 262
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 42 SDGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYF--VLYDRAGY 99
SDG +A+ G S +VLV G S++ P L E L +F + YDR G
Sbjct: 10 SDGTPIAFERSG-----SGPPVVLVGGALSTRAGGAP----LAERLAPHFTVIXYDRRGR 60
Query: 100 GESDPNPRRTVKSEAFDI 117
G+S P V+ E D+
Sbjct: 61 GDSGDTPPYAVEREIEDL 78
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 45 RYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLY-DRAGYGESD 103
YL I S I+ +HG K+ + L ++G Y +Y D G G SD
Sbjct: 6 EYLTRSNISYFSIGSGTPIIFLHGLSLDKQSTCLFFEPL-SNVGQYQRIYLDLPGXGNSD 64
Query: 104 PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIVPTI 163
P T + ++E +++ +F + G S G Y + ++ + GV L P I
Sbjct: 65 PISPSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 45 RYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLY-DRAGYGESD 103
YL I S I+ +HG K+ + L ++G Y +Y D G G SD
Sbjct: 6 EYLTRSNISYFSIGSGTPIIFLHGLSLDKQSTXLFFEPL-SNVGQYQRIYLDLPGXGNSD 64
Query: 104 PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIVPTI 163
P T + ++E +++ +F + G S G Y + ++ + GV L P I
Sbjct: 65 PISPSTSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 63 IVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESD-PNPRRTVKSEAFDIVELA 121
+VL+HGF S S L+++ G + YDR G+G+S P + A D+ +
Sbjct: 27 VVLIHGFPLSGHSWERQSAALLDA-GYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVL 85
Query: 122 DQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVALIVPTINYEWPSLPQSLIRT 177
+ L L ++G S+G T +Y+ R+A VA + SL L++T
Sbjct: 86 ETLDLQDAV-LVGFSMG---TGEVARYVSSYGTARIAAVAFLA--------SLEPFLLKT 133
Query: 178 D 178
D
Sbjct: 134 D 134
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 DGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGES 102
DG + +++ G K ++ HG+ +M + E + S G + +DR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWLLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 103 D-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVA 157
D P + A DI +L + L L + ++G S+G +YI R+AG+
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGG---GDVARYIARHGSARVAGLV 116
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ V + + P PQ +
Sbjct: 117 LLGAVTPLFGQKPDYPQGV 135
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 DGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGES 102
DG + +++ G K ++ HG+ +M + E + S G + +DR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWLLDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 103 D-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVA 157
D P + A DI +L + L L + ++G S+G +YI R+AG+
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGG---GDVARYIARHGSARVAGLV 116
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ V + + P PQ +
Sbjct: 117 LLGAVTPLFGQKPDYPQGV 135
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 39 IRLSDGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAG 98
+ SDG + Y++ G +V HG+ S + ++ S G + +DR G
Sbjct: 3 VTTSDGTNIFYKDWGP---RDGLPVVFHHGWPLSAD-DWDNQMLFFLSHGYRVIAHDRRG 58
Query: 99 YGESD-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVA 157
+G SD P+ + + A D+ L + L L ++ + G + P R+A
Sbjct: 59 HGRSDQPSTGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAV 118
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ VP + + + P L
Sbjct: 119 LVSAVPPVMVKSDTNPDGL 137
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 43 DGRYLAYREKGVSKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGES 102
DG + +++ G K ++ HG+ +M + E + S G + +DR G+G S
Sbjct: 7 DGTQIYFKDWGSGK-----PVLFSHGWILDADM-WEYQMEYLSSRGYRTIAFDRRGFGRS 60
Query: 103 D-PNPRRTVKSEAFDIVELADQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVA 157
D P + A DI +L + L L + ++G S+G +YI R+AG+
Sbjct: 61 DQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGG---GDVARYIARHGSARVAGLV 116
Query: 158 LI--VPTINYEWPSLPQSL 174
L+ V + + P PQ +
Sbjct: 117 LLGAVTPLFGQKPDYPQGV 135
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 63 IVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESD-PNPRRTVKSEAFDIVELA 121
+VL+HGF S S L+++ G + YDR G+G+S P + A D+ +
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDA-GYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVL 84
Query: 122 DQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVALIVPTINYEWPSLPQSLIRT 177
+ L L ++G S+G T +Y+ R+A VA + SL L++T
Sbjct: 85 ETLDLQDAV-LVGFSMG---TGEVARYVSSYGTARIAKVAFLA--------SLEPFLLKT 132
Query: 178 D 178
D
Sbjct: 133 D 133
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 63 IVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESD-PNPRRTVKSEAFDIVELA 121
+VL+HGF S S L+++ G + YDR G+G+S P + A D+ +
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDA-GYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVL 84
Query: 122 DQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVALIVPTINYEWPSLPQSLIRT 177
+ L L ++G S+G T +Y+ R+A VA + SL L++T
Sbjct: 85 ETLDLQDAV-LVGFSMG---TGEVARYVSSYGTARIAKVAFLA--------SLEPFLLKT 132
Query: 178 D 178
D
Sbjct: 133 D 133
>pdb|3QR0|A Chain A, Crystal Structure Of S. Officinalis Plc21
Length = 816
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 153 LAGVALIVPTINYEWPSLPQSLIRTDYRRRLIQWSLWIAKHIPGL---------LYWWIS 203
+AGV V I +WP +P+ LI+ D + ++W + I L LYW I
Sbjct: 1 MAGVETAVRQIELKWPKVPEQLIKGD---KFLKWEEGSSGFIEILLRVDPKGYFLYWKIE 57
Query: 204 QKVVPSTSVLERNPVYFSDRDIEVLKTTK 232
K T +L+ V RDI K K
Sbjct: 58 GK--EDTQLLDLAYV----RDIRCAKYAK 80
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 63 IVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESD-PNPRRTVKSEAFDIVELA 121
+VL+HGF S S L+++ G + YDR G+G+S P + A D+ +
Sbjct: 26 VVLIHGFPLSGHSWERQSAALLDA-GYRVITYDRRGFGQSSQPTTGYDYDTFAADLNTVL 84
Query: 122 DQLQLGSKFYVIGVSIGSYPTWSCLKYIPH----RLAGVALIVPTINYEWPSLPQSLIRT 177
+ L L ++G S G T +Y+ R+A VA + SL L++T
Sbjct: 85 ETLDLQDAV-LVGFSTG---TGEVARYVSSYGTARIAKVAFLA--------SLEPFLLKT 132
Query: 178 D 178
D
Sbjct: 133 D 133
>pdb|3QR1|A Chain A, Crystal Structure Of L. Pealei Plc21
pdb|3QR1|D Chain D, Crystal Structure Of L. Pealei Plc21
Length = 813
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 153 LAGVALIVPTINYEWPSLPQSLIRTDYRRRLIQW 186
+AGV V I +WP++P+ LI+ D + ++W
Sbjct: 1 MAGVETAVRQIELKWPNVPEQLIKGD---KFLKW 31
>pdb|1JHL|H Chain H, Three-Dimensional Structure Of A Heteroclitic Antigen-
Antibody Cross-Reaction Complex
Length = 116
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 186 WSLWIAKHIPGLLYWWISQKVVPSTSVLERNPVYFSDRDIEVLKTTK-GFPMLTQDKLQD 244
W W+ K PG WI + PS S N + + V K++ + L+ +D
Sbjct: 33 WINWV-KQRPGQGLEWIG-NIYPSDSYTNYNQKFKDKATLTVDKSSSTAYMQLSSPTSED 90
Query: 245 RSVFYALRGDVVAAFGDWG 263
+V+Y R D A WG
Sbjct: 91 SAVYYCTRDDNYGAMDYWG 109
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 55 SKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESDPNPRRTVKSEA 114
+K + N +VL+HG+G + E+ +EL ++ V D G+G +S
Sbjct: 8 TKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV--DLPGFG----------RSRG 55
Query: 115 FDIVELADQL-----QLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIVPTINY---- 165
F + LAD Q K +G S+G P R+ + + + +
Sbjct: 56 FGALSLADXAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARD 115
Query: 166 EWPSL 170
EWP +
Sbjct: 116 EWPGI 120
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 105 NPRRTVKSEAFDIVELADQLQLG-SKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIV 160
NP + + + I +L D+ + ++ Y+ G+S+G Y TW+ + P A I
Sbjct: 239 NPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPIC 295
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 55 SKIESNYRIVLVHGFGSSKEMNFPASQELIESLGIYFVLYDRAGYGESDPNPRRTVKSEA 114
+K + N +VL+HG+G + E+ +EL ++ V D G+G +S
Sbjct: 8 TKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV--DLPGFG----------RSRG 55
Query: 115 FDIVELADQL-----QLGSKFYVIGVSIGSYPTWSCLKYIPHRLAGVALIVPTINY---- 165
F + LAD Q K +G ++G P R+ + + + +
Sbjct: 56 FGALSLADMAEAVLQQAPDKAIWLGWALGGLVASQIALTHPERVQALVTVASSPCFSARD 115
Query: 166 EWPSLP-------QSLIRTDYRR 181
EWP + Q + D++R
Sbjct: 116 EWPGIKPDVLAGFQQQLSDDFQR 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,591,452
Number of Sequences: 62578
Number of extensions: 441545
Number of successful extensions: 900
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 25
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)