BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037358
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG GF+GSHI ++ L RGL V
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEV 27
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 29 ETPNVKPPSNEKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXL-EDSWAESVVWH 87
E P N K+ + G GF+ SHI + G V + ED + + +H
Sbjct: 20 EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--FH 77
Query: 88 QGXXXXXXXXXXXXIGVNSVISC---VGGFG---SNSYMYKINGTA-NINAVKAAKEQGV 140
GV+ V + +GG G SN + N T + N ++AA+ G+
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 141 KRFVFVSAA 149
KRF + S+A
Sbjct: 138 KRFFYASSA 146
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 29 ETPNVKPPSNEKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXL-EDSWAESVVWH 87
E P N K+ + G GF+ SHI + G V + ED + + +H
Sbjct: 20 EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--FH 77
Query: 88 QGXXXXXXXXXXXXIGVNSVISC---VGGFG---SNSYMYKINGTA-NINAVKAAKEQGV 140
GV+ V + +GG G SN + N T + N ++AA+ G+
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 141 KRFVFVSAA 149
KRF + S+A
Sbjct: 138 KRFFYASSA 146
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 29 ETPNVKPPSNEKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXL-EDSWAESVVWH 87
E P N K+ + G GF+ SHI + G V + ED + + +H
Sbjct: 20 EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--FH 77
Query: 88 QGXXXXXXXXXXXXIGVNSVISC---VGGFG---SNSYMYKINGTA-NINAVKAAKEQGV 140
GV+ V + +GG G SN + N T + N ++AA+ G+
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 141 KRFVFVSAA 149
KRF + S+A
Sbjct: 138 KRFFYASSA 146
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 29 ETPNVKPPSNEKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXL-EDSWAESVVWH 87
E P N K+ + G GF+ SHI + G V + ED + + +H
Sbjct: 20 EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--FH 77
Query: 88 QGXXXXXXXXXXXXIGVNSVISC---VGGFG---SNSYMYKINGTA-NINAVKAAKEQGV 140
GV+ V + +GG G SN + N T + N ++AA+ G+
Sbjct: 78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI 137
Query: 141 KRFVFVSAA 149
KRF + S+A
Sbjct: 138 KRFFYASSA 146
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 25/137 (18%)
Query: 36 PSNEKVLVLGGNGFVGSHICKEALERGLTV--XXXXXXXXXXLEDSWA-------ESVV- 85
P VLV G NGFV SH+ ++ LE G V L+ W E+ V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 86 ---WHQGXXXXXXXXXXXXIGVNSVISCVGGFGSNSY----MYKINGTANINAVKAAKEQ 138
QG + SV+S SN Y I GT +NA++AA
Sbjct: 69 EDXLKQGAYDEVIKGAAGVAHIASVVSF-----SNKYDEVVTPAIGGT--LNALRAAAAT 121
Query: 139 -GVKRFVFVSAADFGLV 154
VKRFV S+ L+
Sbjct: 122 PSVKRFVLTSSTVSALI 138
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 53/137 (38%), Gaps = 25/137 (18%)
Query: 36 PSNEKVLVLGGNGFVGSHICKEALERGLTV--XXXXXXXXXXLEDSWA-------ESVV- 85
P VLV G NGFV SH+ ++ LE G V L+ W E+ V
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68
Query: 86 ---WHQGXXXXXXXXXXXXIGVNSVISCVGGFGSNSY----MYKINGTANINAVKAAKEQ 138
QG + SV+S SN Y I GT +NA++AA
Sbjct: 69 EDMLKQGAYDEVIKGAAGVAHIASVVSF-----SNKYDEVVTPAIGGT--LNALRAAAAT 121
Query: 139 -GVKRFVFVSAADFGLV 154
VKRFV S+ L+
Sbjct: 122 PSVKRFVLTSSTVSALI 138
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 39 EKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXLEDSWAESVVWHQGXXXXXXXXX 98
+K++++G +GFVGS + EAL RG V ++ E + +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVC 62
Query: 99 XXXIGVNSVISCVGGFGSNSYMYKINGTANINAVKAAKEQGVKRFVFVSAA 149
G ++VIS +N +Y + + K+ GV RF+ V A
Sbjct: 63 EVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLXVGGA 113
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+VLV GG+G++GSH C + L+ G V
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDV 27
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 32 NVKPPSNEKVLVLGGNGFVGSHICKEALERGL 63
N +N V+V+GG GFVGS++ K LE G+
Sbjct: 26 NASKLANTNVMVVGGAGFVGSNLVKRLLELGV 57
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 39 EKVLVLGGNGFVGSHICKEALERG 62
EKVLV GG G++GSH E LE G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 39 EKVLVLGGNGFVGSHICKEALERG 62
EKVLV GG G++GSH E LE G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 39 EKVLVLGGNGFVGSHICKEALERG 62
EKVLV GG G++GSH E LE G
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAG 26
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 39 EKVLVLGGNGFVGSHICKEALE 60
+KVL+LG NGF+G H+ K LE
Sbjct: 25 KKVLILGVNGFIGHHLSKRILE 46
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 24/153 (15%)
Query: 41 VLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXLEDSWAESVVWHQGXXXXXXXXXXX 100
+L+ GG G++GSH K+ ++ GL+V ED+ E ++ G
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGH-EDAITEGAKFYNGDLRDKAFLRDV 62
Query: 101 XIGVNSVISCVGGFGSNSYM----------YKINGTANINAVKAAKEQGVKRFVFVS-AA 149
N I V F ++S + Y N + ++ E V +F+F S AA
Sbjct: 63 FTQEN--IEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 150 DFGLVNYLL----------RGYYEGKRATEKEL 172
+G V+ L Y E K A EK L
Sbjct: 121 TYGEVDVDLITEETMTNPTNTYGETKLAIEKML 153
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 37 SNEKVLVLGGNGFVGSHICKEALERG--------LTVXXXXXXXXXXLEDSWAESVVWHQ 88
S ++L++G G++G H+ K +L+ G + LE A
Sbjct: 3 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 62
Query: 89 GXXXXXXXXXXXXIGVNSVISCVGGFGSNSYMYKINGTANINAVKAAKEQG-VKRF 143
G V+ VIS VG S +N +KA KE G VKRF
Sbjct: 63 GSIDDHASLVEAVKNVDVVISTVGSLQIES---------QVNIIKAIKEVGTVKRF 109
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 38 NEKVLVLGGNGFVGSHICKEALERGLTV 65
+E V V G +GF+GS + LERG TV
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLERGYTV 32
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+V V GG GF+GS I K LE G +V
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSV 28
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 40 KVLVLGGNGFVGSHICKEALERG 62
K+L+ GG G++G+H+ K +L+ G
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLG 35
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 40 KVLVLGGNGFVGSHICKEALERG 62
K+L+ GG G++G+H+ K +L+ G
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLG 35
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 40 KVLVLGGNGFVGSHICKEALERG 62
K+L+ GG G++G+H+ K +L+ G
Sbjct: 9 KILIFGGTGYIGNHMVKGSLKLG 31
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 40 KVLVLGGNGFVGSHICKEALERG 62
K+L+ GG G++G+H+ K +L+ G
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLG 35
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 129 INAVKAAKEQGVKRFVFVSAA-----DFGLVNYLLRGYYEGKRATEKEL-MTELPHGGVI 182
I ++ A+++G+KRF+ VS+ D G N R Y KR + EL + L + I
Sbjct: 112 IKTIQEAEKRGIKRFIXVSSVGTVDPDQGPXNX--RHYLVAKRLADDELKRSSLDY--TI 167
Query: 183 LRPGFIHGTRQVGSIKL 199
+RPG + G + +
Sbjct: 168 VRPGPLSNEESTGKVTV 184
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 27 GTETPNVKPPSNEKVLVLGGNGFVGSHICKEAL 59
G P +VL+LG NGF+G+H+ + L
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 27 GTETPNVKPPSNEKVLVLGGNGFVGSHICKEAL 59
G P +VL+LG NGF+G+H+ + L
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 27 GTETPNVKPPSNEKVLVLGGNGFVGSHICKEAL 59
G P +VL+LG NGF+G+H+ + L
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL 34
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 27 GTETPNVKPPSNEKVLVLGGNGFVGSHICKEAL 59
G P +VL+LG NGF+G+H+ + L
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL 34
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 27 GTETPNVKPPSNEKVLVLGGNGFVGSHICKEAL 59
G P +VL+LG NGF+G+H+ + L
Sbjct: 2 GMSQPACTARRRTRVLILGVNGFIGNHLTERLL 34
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 35 PPSNEKVLVLGGNGFVGSHICKEALERGLTVXXXXXXXXXXLEDSWAESVVWHQGXXXXX 94
P + +LV G G VG + +G TV + E VV G
Sbjct: 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG----TGGEEVV---GSLEDG 68
Query: 95 XXXXXXXIGVNSVISCVGGFGS-----NSYMYKINGTANINAVKAAKEQGVKRFVFVSAA 149
+GV++V+ +G F S M+ +N + AA GV+RFVF S+
Sbjct: 69 QALSDAIMGVSAVLH-LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSG 127
Query: 150 D 150
+
Sbjct: 128 E 128
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+++V GG GF+GSH+ + +E G V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
+++V GG GF+GSH+ + +E G V
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV 27
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 41 VLVLGGNGFVGSHICKEALERG 62
VLV GG G++GSH E +E G
Sbjct: 14 VLVTGGAGYIGSHTVVELIENG 35
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 41 VLVLGGNGFVGSHICKEALERGLT 64
++V GG GF+GS+I K ++G+T
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT 25
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 41 VLVLGGNGFVGSHICKEALERGLT 64
++V GG GF+GS+I K ++G+T
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGIT 72
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 31 PNVKPPSNEKVLVLGGNGFVGSHICKEALE 60
P +VL+LG NGF+G+H+ + L
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLR 337
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 40 KVLVLGGNGFVGSHICKEAL 59
+VL+LG NGF+G+H+ + L
Sbjct: 2 RVLILGVNGFIGNHLTERLL 21
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 41 VLVLGGNGFVGSHICKEALERGLTV 65
+LV GG G++GSH E L G V
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDV 32
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EKVLVLGGNGFVGSHICKEALERGLTV 65
+++L+ GG GFVGSH+ + + G V
Sbjct: 6 KRILITGGAGFVGSHLTDKLMMDGHEV 32
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 40 KVLVLGGNGFVGSHICKEALERGLTV 65
K+L+ GG GF+GS++ AL +G+ +
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDL 28
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 40 KVLVLGGNGFVGSHICKEAL 59
++LV GG GF+GSH ++ L
Sbjct: 2 RLLVTGGAGFIGSHFVRQLL 21
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 40 KVLVLGGNGFVGSHICKEAL 59
++LV GG GF+GSH ++ L
Sbjct: 2 RLLVTGGAGFIGSHFVRQLL 21
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 152 GLVNYLLRGYYEGKRATEKELMTELPHGGVILRPGFIHGTRQVGSIKLP--LSVIGAPLE 209
L +YLLR + +++ L GG +LRPG+ + G+ P L A +E
Sbjct: 27 ALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIE 86
Query: 210 MI 211
++
Sbjct: 87 IL 88
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 152 GLVNYLLRGYYEGKRATEKELMTELPHGGVILRPGFIHGTRQVGSIKLP--LSVIGAPLE 209
L +YLLR + +++ L GG +LRPG+ + G+ P L A +E
Sbjct: 20 ALQDYLLRTVQLDNQPIHHKILALLKSGGKLLRPGYFYLFSTFGNAATPAQLQAGAAAIE 79
Query: 210 MI 211
++
Sbjct: 80 IL 81
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 37 SNEKVLVLGGNGFVGSHICKEALE 60
S+ +VLV GG G++GSH + L
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLR 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,836,049
Number of Sequences: 62578
Number of extensions: 239792
Number of successful extensions: 671
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 67
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)