BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037360
(642 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 31/239 (12%)
Query: 400 LPRGG-IHPLTRYVMNYIKTLTIYDDTLNLLFEDQNMEDTHSIVESETEQDISPITFCPL 458
+P+ G +H LT + +++ L + +T + Q + + SE + + L
Sbjct: 329 MPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQETSSSATSYSSEFSKRL-------L 381
Query: 459 ACHLRSITSALECSLVVKSRLYREDSLRHIFLMNNIHYVVQKIKGSDLRIFF------GD 512
+ ++ + L+ +L+ KS++Y + +L IFL NN +Y+++ ++ S+L +
Sbjct: 382 STYICKVLGNLQLNLLSKSKVYEDPALSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAE 441
Query: 513 EWIRKHIGKFQQHATSYQRATWCSVLSFLRD-------DGHCSNSVLKTSYKERCREFTN 565
R+HI +Q +YQR +W V ++ + G + KER + F +
Sbjct: 442 RSYREHI---EQQIQTYQR-SWLKVTDYIAEKNLPVFQPGVKLRDKERQMIKERFKGFND 497
Query: 566 AFEDVYKIQIQWCITDPQLKEDLRISTSLKVIHAYRTFIGR------NRISDKHIKYTV 618
E++ KIQ W I D + ++ +R + V Y F+ R + +K+IKY V
Sbjct: 498 GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRV 556
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 489 FLMNNIHYVVQKIKGSDLRIFFGDEWIRKHIGKFQQHATSYQRATWCSVLSFLRD----D 544
F++ N+ V Q ++ S+L + E + + ++ SY + W + + L D D
Sbjct: 415 FILMNLTLVEQIVEKSELNLMLAGEG-HSRLERLKKRYISYMVSDWRDLTANLMDSVFID 473
Query: 545 GHCSNSVLKTSYKERCREFTNAFEDVYKIQIQWCITDPQLKEDLRISTSLKVIHAYRTFI 604
S K KE+ R+F FED+ Q+ ++DP LK L+ V+ Y F
Sbjct: 474 SSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFY 533
Query: 605 GRNRIS----DKHIKYT 617
R + S KHIKYT
Sbjct: 534 SRYKDSFKNPRKHIKYT 550
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 489 FLMNNIHYVVQKIKGSDLRIFFGDEWIRKHIGKFQQHATSYQRATWCSVLSFLRD----D 544
F++ N+ V Q ++ S+L + E + + ++ SY + W + + L D D
Sbjct: 416 FILMNLTLVEQIVEKSELNLMLAGEG-HSRLERLKKRYISYMVSDWRDLTANLMDSVFID 474
Query: 545 GHCSNSVLKTSYKERCREFTNAFEDVYKIQIQWCITDPQLKEDLRISTSLKVIHAYRTFI 604
S K KE+ R+F FED+ Q+ ++DP LK L+ V+ Y F
Sbjct: 475 SSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFY 534
Query: 605 GRNRIS----DKHIKYT 617
R + S KHIKYT
Sbjct: 535 SRYKDSFKNPRKHIKYT 551
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 489 FLMNNIHYVVQKIKGSDLRIFFGDEWIRKHIGKFQQHATSYQRATWCSVLSFLRD----D 544
F++ N+ V Q ++ S+L + E + + ++ SY + W + + L D D
Sbjct: 418 FILXNLTLVEQIVEKSELNLXLAGEG-HSRLERLKKRYISYXVSDWRDLTANLXDSVFID 476
Query: 545 GHCSNSVLKTSYKERCREFTNAFEDVYKIQIQWCITDPQLKEDLRISTSLKVIHAYRTFI 604
S K KE+ R+F FED+ Q+ ++DP LK L+ V Y F
Sbjct: 477 SSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYERFY 536
Query: 605 GRNRIS----DKHIKYT 617
R + S KHIKYT
Sbjct: 537 SRYKDSFKNPRKHIKYT 553
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 93 GEVSEFLGAIDE--VQTLIDSFSGVSVNENGRVRELLYRA-NNIVQMAMLRLQEELIHIL 149
+V E + AI E V+TL+D F+ + ++ E+L R + I Q + L L +L+HI
Sbjct: 699 AQVVEAVCAIFEKSVKTLLDDFAPMV----PQLCEMLGRMYSTIPQASALDLTRQLVHIF 754
Query: 150 VHHKLYFEP 158
H +F P
Sbjct: 755 AHEPAHFPP 763
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 509 FFGDEWIRKHIGKFQQHATSYQRATWCSVLSFLRDDGHCSNSVLKTSYKERCREFTNAFE 568
+ G W R H+ + S + LS + +NS + CRE T FE
Sbjct: 91 YVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCRELTERFE 150
Query: 569 DVYKIQIQWCITDPQLKEDLRISTSLKVI---------HAYRTFIGR 606
DV+ + +T PQ + D + S +VI H Y+ + R
Sbjct: 151 DVW--VVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILAR 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,097,990
Number of Sequences: 62578
Number of extensions: 662405
Number of successful extensions: 1181
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 6
length of query: 642
length of database: 14,973,337
effective HSP length: 105
effective length of query: 537
effective length of database: 8,402,647
effective search space: 4512221439
effective search space used: 4512221439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)