BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037366
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66GS2|B3GTC_ARATH Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana
           GN=B3GALT12 PE=2 SV=1
          Length = 371

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LC+P  R+KELH   MCSKSPTLPPDD
Sbjct: 337 PKCSGLCDPESRLKELHKTDMCSKSPTLPPDD 368


>sp|Q8L7M1|B3GTE_ARATH Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana
           GN=B3GALT14 PE=2 SV=1
          Length = 345

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 20/32 (62%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LCNP  RM ELH    CSKSPTLP DD
Sbjct: 313 PKCSGLCNPEKRMLELHKQESCSKSPTLPSDD 344


>sp|Q9LKA9|B3GTD_ARATH Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana
           GN=B3GALT13 PE=2 SV=1
          Length = 343

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LCNP  RM ELH +  CSKSPTLP DD
Sbjct: 311 PKCSGLCNPEKRMLELHMLESCSKSPTLPSDD 342


>sp|Q6D0E6|RAPA_ERWCT RNA polymerase-associated protein RapA OS=Erwinia carotovora subsp.
           atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=rapA
           PE=3 SV=1
          Length = 967

 Score = 30.4 bits (67), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 10  LHVLSKLFSGQLLGPLLDIESSDADDNFAAR 40
           L+VLS L   Q + PLL   +SD+DDN  AR
Sbjct: 369 LNVLSDLLGEQDIEPLLKSINSDSDDNQKAR 399


>sp|P70671|IRF3_MOUSE Interferon regulatory factor 3 OS=Mus musculus GN=Irf3 PE=1 SV=1
          Length = 419

 Score = 30.0 bits (66), Expect = 3.9,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 13  LSKLFSGQLLGPLLDIESSD----ADDNFAARFPNICCLCNPA 51
           L KLF G +LGPL D  SSD    +D +     PN+    NPA
Sbjct: 139 LPKLFDGLILGPLKDEGSSDLAIVSDPSQQLPSPNVNNFLNPA 181


>sp|Q02942|TRF_BLADI Transferrin OS=Blaberus discoidalis PE=1 SV=1
          Length = 726

 Score = 29.3 bits (64), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 14/59 (23%)

Query: 1   MGTCGPIN---------MLHVLSKLFSGQLLGPLLDIESSDADDNFA--ARFPNICCLC 48
           MG  GP+N          LH LS LFS   L   +   + D   N A  A++PN+C LC
Sbjct: 155 MGVLGPLNNSDLTPRENELHALSHLFSEACL---VGKWAPDPAQNQALKAKYPNLCALC 210


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,603,768
Number of Sequences: 539616
Number of extensions: 922782
Number of successful extensions: 1594
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)