Query 037366
Match_columns 74
No_of_seqs 22 out of 24
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 11:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2288 Galactosyltransferases 98.2 8.1E-07 1.8E-11 68.6 2.8 38 36-73 236-273 (274)
2 PLN03193 beta-1,3-galactosyltr 97.8 9.5E-06 2.1E-10 64.8 1.9 28 37-67 373-400 (408)
3 PF10829 DUF2554: Protein of u 57.4 7 0.00015 26.0 1.4 17 7-23 6-22 (76)
4 PF10559 Plug_translocon: Plug 34.1 25 0.00054 19.3 1.1 16 24-39 10-25 (35)
5 PF01205 UPF0029: Uncharacteri 29.4 34 0.00073 22.8 1.3 22 2-24 61-94 (110)
6 PF10497 zf-4CXXC_R1: Zinc-fin 28.5 25 0.00053 23.1 0.5 14 37-50 60-73 (105)
7 cd06197 FNR_like_2 FAD/NAD(P) 27.2 43 0.00093 22.9 1.6 17 3-19 195-211 (220)
8 PF05458 Siva: Cd27 binding pr 23.9 55 0.0012 23.4 1.7 20 1-20 27-50 (175)
9 PF01700 Orbi_VP3: Orbivirus V 21.0 29 0.00062 31.4 -0.3 23 23-45 241-273 (890)
10 PF09899 DUF2126: Putative ami 20.6 44 0.00096 29.9 0.7 16 12-27 470-485 (819)
11 PHA02122 hypothetical protein 20.2 84 0.0018 20.3 1.8 23 3-27 8-30 (65)
No 1
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=98.22 E-value=8.1e-07 Score=68.63 Aligned_cols=38 Identities=24% Similarity=0.085 Sum_probs=35.1
Q ss_pred cccccCCCccCCCChHHHHHHhhccccCCCCCCCCCCC
Q 037366 36 NFAARFPNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73 (74)
Q Consensus 36 ~~~WDIPKCSGLCNPe~rm~ELH~~~~CSkSPTL~pdD 73 (74)
--+|++|||||+|++++||+++|..+.|++++++.+++
T Consensus 236 ~~~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 236 CAASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred eeeeecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 35899999999999999999999999999999988764
No 2
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=97.80 E-value=9.5e-06 Score=64.76 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.6
Q ss_pred ccccCCCccCCCChHHHHHHhhccccCCCCC
Q 037366 37 FAARFPNICCLCNPAFRMKELHNISMCSKSP 67 (74)
Q Consensus 37 ~~WDIPKCSGLCNPe~rm~ELH~~~~CSkSP 67 (74)
-.||+ ||||+|||+.||+|+|++ |....
T Consensus 373 ~~~~~-~csg~c~~~~~~~~~h~~--c~~~~ 400 (408)
T PLN03193 373 ASFDW-SCSGICRSADRIKEVHRR--CGEGE 400 (408)
T ss_pred EEecc-cCcccCCHHHHHHHHHHh--cCCCc
Confidence 56899 999999999999999974 65543
No 3
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=57.43 E-value=7 Score=25.96 Aligned_cols=17 Identities=47% Similarity=0.792 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhhccccc
Q 037366 7 INMLHVLSKLFSGQLLG 23 (74)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (74)
|..+-++.-|||||++.
T Consensus 6 lS~~lL~caLFSGqllA 22 (76)
T PF10829_consen 6 LSALLLICALFSGQLLA 22 (76)
T ss_pred HHHHHHHHHHhcchHHh
Confidence 44566778999999985
No 4
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=34.06 E-value=25 Score=19.35 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.3
Q ss_pred cccccccCCCCccccc
Q 037366 24 PLLDIESSDADDNFAA 39 (74)
Q Consensus 24 ~~~~~~~~~~~~~~~W 39 (74)
||.-+.+++..|.|.|
T Consensus 10 pLyG~~~~~~~D~f~~ 25 (35)
T PF10559_consen 10 PLYGLQSASSSDPFYW 25 (35)
T ss_dssp B-STSTTTTSSCCHTT
T ss_pred ccccccCCCcCCHHHH
Confidence 8888888899999988
No 5
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=29.45 E-value=34 Score=22.76 Aligned_cols=22 Identities=50% Similarity=0.856 Sum_probs=12.5
Q ss_pred CcccchHHHHHHHH------------Hhhcccccc
Q 037366 2 GTCGPINMLHVLSK------------LFSGQLLGP 24 (74)
Q Consensus 2 ~~~~~~~~~~~~~~------------~~~~~~~~~ 24 (74)
||.| .-||++|.+ .|.|.+|||
T Consensus 61 gtAG-~piL~~L~~~~l~nv~VVV~RyfGGi~LG~ 94 (110)
T PF01205_consen 61 GTAG-KPILEVLEHNGLTNVLVVVTRYFGGIKLGP 94 (110)
T ss_dssp TSSC-HHHHHHHHHCTB-SEEEEEEEE--SS--HH
T ss_pred CCcc-HHHHHHHHhCCcCCEEEEEEEEeCCeeecc
Confidence 4555 357888876 488999887
No 6
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.54 E-value=25 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=12.0
Q ss_pred ccccCCCccCCCCh
Q 037366 37 FAARFPNICCLCNP 50 (74)
Q Consensus 37 ~~WDIPKCSGLCNP 50 (74)
-.|--|+|-|+||=
T Consensus 60 ~~W~CP~CrgiCnC 73 (105)
T PF10497_consen 60 PNWKCPKCRGICNC 73 (105)
T ss_pred CceECCCCCCeeCC
Confidence 45999999999983
No 7
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=27.17 E-value=43 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHhhc
Q 037366 3 TCGPINMLHVLSKLFSG 19 (74)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (74)
.|||-.|++.+.+.+..
T Consensus 195 ~CGP~~m~~~~~~~~~~ 211 (220)
T cd06197 195 LCGPPALEKAVLEWLEG 211 (220)
T ss_pred EECcHHHHHHHHHHhhh
Confidence 59999999999887654
No 8
>PF05458 Siva: Cd27 binding protein (Siva); InterPro: IPR022773 Siva binds to the CD27 cytoplasmic tail. It has a DD homology region, a box-B-like ring finger, and a zinc finger-like domain. Overexpression of Siva in various cell lines induces apoptosis, suggesting an important role for Siva in the CD27-transduced apoptotic pathway []. Siva-1 binds to and inhibits BCL-X(L)-mediated protection against UV radiation-induced apoptosis. Indeed, the unique amphipathic helical region (SAH) present in Siva-1 is required for its binding to BCL-X(L) and sensitising cells to UV radiation. Natural complexes of Siva-1/BCL-X(L) are detected in HUT78 and murine thymocyte, suggesting a potential role for Siva-1 in regulating T cell homeostasis []. This family contains both Siva-1 and the shorter Siva-2 lacking the sequence coded by exon 2. It has been suggested that Siva-2 could regulate the function of Siva-1 [].
Probab=23.92 E-value=55 Score=23.36 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=16.1
Q ss_pred CCcccchHHHHHHHH----Hhhcc
Q 037366 1 MGTCGPINMLHVLSK----LFSGQ 20 (74)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~ 20 (74)
.|.||+-+|-+|..| ||.|.
T Consensus 27 ~GV~~~~~mkeVyEKTkqLLF~GA 50 (175)
T PF05458_consen 27 NGVCGERYMKEVYEKTKQLLFRGA 50 (175)
T ss_pred cccchHHHHHHHHHHHHHHHHHHH
Confidence 388999999998776 77774
No 9
>PF01700 Orbi_VP3: Orbivirus VP3 (T2) protein; InterPro: IPR002614 This entry represents the inner layer core protein VP3 from Orbiviruses, a family of Reoviruses that have dsRNA genomes of 10-12 linear segments []. Orbiviruses include Broadhaven virus (BRD), Epizootic hemorrhagic disease virus and Bluetongue virus (BTV) []. The Orbivirus VP3 protein is part of the virus core and makes a 'subcore' shell made up of 120 copies of the 100K protein []. VP3 particles can also bind RNA and are fundamental in the early stages of viral core formation []. The structural core protein VP2 from BRD is similar to VP3 from BTV.; GO: 0005198 structural molecule activity; PDB: 2BTV_A.
Probab=21.01 E-value=29 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=16.5
Q ss_pred ccccccccCC----------CCccccccCCCcc
Q 037366 23 GPLLDIESSD----------ADDNFAARFPNIC 45 (74)
Q Consensus 23 ~~~~~~~~~~----------~~~~~~WDIPKCS 45 (74)
++|.|+-++| ++.|+.|+.|+|+
T Consensus 241 ~~LtD~~~~dtI~il~~~lP~np~vIW~VPRc~ 273 (890)
T PF01700_consen 241 EFLTDFRRPDTIYILSYQLPPNPNVIWEVPRCS 273 (890)
T ss_dssp CCC--SGGCCEEEE--C-SS--HHHHHHSTTTH
T ss_pred cccccccCCCeEEEEeccCCCCCcceeeCcccc
Confidence 4788888877 5789999999998
No 10
>PF09899 DUF2126: Putative amidoligase enzyme (DUF2126); InterPro: IPR018667 This domain is found in bacterial transglutaminase and transglutaminase-like proteins. Their exact function is, as yet, unknown.
Probab=20.55 E-value=44 Score=29.88 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=13.4
Q ss_pred HHHHHhhccccccccc
Q 037366 12 VLSKLFSGQLLGPLLD 27 (74)
Q Consensus 12 ~~~~~~~~~~~~~~~~ 27 (74)
-||=||||+.+||--.
T Consensus 470 sLSYLFSG~FIGPTSQ 485 (819)
T PF09899_consen 470 SLSYLFSGLFIGPTSQ 485 (819)
T ss_pred hHhHhhccccccCccC
Confidence 4899999999999543
No 11
>PHA02122 hypothetical protein
Probab=20.22 E-value=84 Score=20.32 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=15.7
Q ss_pred cccchHHHHHHHHHhhccccccccc
Q 037366 3 TCGPINMLHVLSKLFSGQLLGPLLD 27 (74)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (74)
.|||+ |-.|..-.|-| |+||=+|
T Consensus 8 ~~gpv-m~~vfe~afi~-l~g~~~~ 30 (65)
T PHA02122 8 KPGPV-MNRVFEEAFIG-LLGDGCE 30 (65)
T ss_pred CCchH-HHHHHHHHHHH-hhCCCCC
Confidence 58986 66666666665 6787665
Done!