Query 037366
Match_columns 74
No_of_seqs 22 out of 24
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 19:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a1f_A Cytochrome B-245 heavy 24.9 35 0.0012 20.3 1.6 17 3-19 152-168 (186)
2 2nx6_A Nematocyst outer WALL a 22.0 25 0.00086 18.6 0.5 12 40-51 7-18 (27)
3 3lyu_A Putative hydrogenase; t 21.3 44 0.0015 20.5 1.6 17 3-19 113-129 (142)
4 2hm3_A Nematocyst outer WALL a 19.2 25 0.00085 19.1 0.1 11 43-53 11-21 (31)
5 1wqb_A Aptotoxin VII; spider'S 18.8 40 0.0014 18.4 0.9 10 38-47 13-22 (32)
6 3lrx_A Putative hydrogenase; a 18.6 54 0.0019 20.3 1.6 17 3-19 118-134 (158)
7 1vi7_A Hypothetical protein YI 17.7 62 0.0021 22.9 1.9 22 2-24 80-113 (217)
8 3hg7_A D-isomer specific 2-hyd 17.7 1E+02 0.0035 22.1 3.1 44 2-45 230-275 (324)
9 4aor_D Trypsin inhibitor 3; hy 15.5 29 0.00099 19.6 -0.2 11 43-53 20-30 (37)
10 2nx7_A Nematocyst outer WALL a 15.3 22 0.00074 19.0 -0.7 15 40-54 8-22 (28)
No 1
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=24.93 E-value=35 Score=20.32 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.3
Q ss_pred cccchHHHHHHHHHhhc
Q 037366 3 TCGPINMLHVLSKLFSG 19 (74)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (74)
.|||-.|...+.+....
T Consensus 152 ~CGP~~m~~~v~~~l~~ 168 (186)
T 3a1f_A 152 LCGPEALAETLSKQSIS 168 (186)
T ss_dssp EESCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHH
Confidence 69999999998887654
No 2
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=22.00 E-value=25 Score=18.62 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.6
Q ss_pred cCCCccCCCChH
Q 037366 40 RFPNICCLCNPA 51 (74)
Q Consensus 40 DIPKCSGLCNPe 51 (74)
.+|.||-.|-|.
T Consensus 7 qfpscspscapq 18 (27)
T 2nx6_A 7 QFPSCSPSCAPQ 18 (27)
T ss_dssp TCTTCCGGGTTT
T ss_pred CCCCCCCccchH
Confidence 478899998874
No 3
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=21.30 E-value=44 Score=20.48 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=13.8
Q ss_pred cccchHHHHHHHHHhhc
Q 037366 3 TCGPINMLHVLSKLFSG 19 (74)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (74)
+|||--|+..+.+....
T Consensus 113 ~CGP~~Mm~av~~~l~~ 129 (142)
T 3lyu_A 113 MVGPVGDQKQVFEVVKE 129 (142)
T ss_dssp EESCHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHH
Confidence 59999999988877643
No 4
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=19.24 E-value=25 Score=19.14 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=8.8
Q ss_pred CccCCCChHHH
Q 037366 43 NICCLCNPAFR 53 (74)
Q Consensus 43 KCSGLCNPe~r 53 (74)
-|||-|-||-|
T Consensus 11 gcsgdcypeck 21 (31)
T 2hm3_A 11 GCSGDCYPECK 21 (31)
T ss_dssp TCCGGGTTTTC
T ss_pred CcCccccCccC
Confidence 59999999754
No 5
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=18.84 E-value=40 Score=18.38 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=8.7
Q ss_pred cccCCCccCC
Q 037366 38 AARFPNICCL 47 (74)
Q Consensus 38 ~WDIPKCSGL 47 (74)
.|.-|-|||+
T Consensus 13 pwewpccsgl 22 (32)
T 1wqb_A 13 PWEWPCCSGL 22 (32)
T ss_dssp SSSSCBCTTC
T ss_pred CccCccccCc
Confidence 4888999997
No 6
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=18.64 E-value=54 Score=20.35 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=14.1
Q ss_pred cccchHHHHHHHHHhhc
Q 037366 3 TCGPINMLHVLSKLFSG 19 (74)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (74)
.|||-.|+..+.+.+..
T Consensus 118 ~CGP~~mm~~v~~~l~~ 134 (158)
T 3lrx_A 118 MVGPVGDQKQVFEVVKE 134 (158)
T ss_dssp EESCHHHHHHHHHHHGG
T ss_pred EECCHHHHHHHHHHHHH
Confidence 59999999988887653
No 7
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=17.70 E-value=62 Score=22.95 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=16.2
Q ss_pred CcccchHHHHHHHH------------Hhhcccccc
Q 037366 2 GTCGPINMLHVLSK------------LFSGQLLGP 24 (74)
Q Consensus 2 ~~~~~~~~~~~~~~------------~~~~~~~~~ 24 (74)
||.| .-||++|.+ .|.|.+|||
T Consensus 80 GTAG-~piL~~L~~~~l~nv~vVVtRyfGGikLG~ 113 (217)
T 1vi7_A 80 GTAG-KPMLAQLMGSGVGEITAVVVRYYGGILLGT 113 (217)
T ss_dssp TSSS-HHHHHHHHHHTCCSEEEECCEECCSCCCCH
T ss_pred Ccch-HHHHHHHHHcCCCCEEEEEEEEeCCceecc
Confidence 5666 357888865 588989987
No 8
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=17.70 E-value=1e+02 Score=22.14 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=32.5
Q ss_pred CcccchHHHHHHHHHhhccccccccccccCCC--CccccccCCCcc
Q 037366 2 GTCGPINMLHVLSKLFSGQLLGPLLDIESSDA--DDNFAARFPNIC 45 (74)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~WDIPKCS 45 (74)
|.-++++---++.-|-+|++.|..||+-.... .++-.|+.|++-
T Consensus 230 aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 275 (324)
T 3hg7_A 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLI 275 (324)
T ss_dssp SCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEE
T ss_pred CCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEE
Confidence 45567777778888899999999998754432 456679988764
No 9
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=15.52 E-value=29 Score=19.55 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=8.0
Q ss_pred CccCCCChHHH
Q 037366 43 NICCLCNPAFR 53 (74)
Q Consensus 43 KCSGLCNPe~r 53 (74)
-|||.|-|--+
T Consensus 20 ccsg~cvphp~ 30 (37)
T 4aor_D 20 CCSGACVPHPI 30 (37)
T ss_dssp BTTSCEEECSS
T ss_pred cccccccCCCe
Confidence 59999977533
No 10
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=15.31 E-value=22 Score=19.00 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=12.0
Q ss_pred cCCCccCCCChHHHH
Q 037366 40 RFPNICCLCNPAFRM 54 (74)
Q Consensus 40 DIPKCSGLCNPe~rm 54 (74)
.-|-||.-|-|+-|+
T Consensus 8 qqpgcssacapacrl 22 (28)
T 2nx7_A 8 QQPGCSSACAPACRL 22 (28)
T ss_dssp HSTTCCGGGTTTCCH
T ss_pred cCCCccccccchhhe
Confidence 358899999998765
Done!