Query 037367
Match_columns 405
No_of_seqs 314 out of 1172
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 11:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 97.8 2.5E-05 5.5E-10 48.4 3.4 21 126-146 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.8 8.6E-05 1.9E-09 83.0 9.7 67 123-193 670-737 (862)
3 PF13178 DUF4005: Protein of u 97.6 4.9E-05 1.1E-09 64.9 3.3 14 392-405 34-47 (102)
4 smart00015 IQ Short calmodulin 97.3 0.00023 5E-09 46.2 2.9 21 125-145 2-22 (26)
5 KOG0160 Myosin class V heavy c 97.0 0.004 8.8E-08 70.0 10.4 67 122-191 692-758 (862)
6 PTZ00014 myosin-A; Provisional 96.5 0.0045 9.8E-08 69.7 6.3 41 127-167 778-819 (821)
7 KOG0520 Uncharacterized conser 96.4 0.002 4.3E-08 72.9 3.0 70 125-194 809-886 (975)
8 PF00612 IQ: IQ calmodulin-bin 96.1 0.0079 1.7E-07 37.2 3.2 19 149-167 2-20 (21)
9 KOG0164 Myosin class I heavy c 95.6 0.03 6.5E-07 61.9 7.4 56 125-191 695-751 (1001)
10 COG5022 Myosin heavy chain [Cy 95.3 0.055 1.2E-06 63.6 8.5 44 124-167 743-787 (1463)
11 smart00015 IQ Short calmodulin 94.3 0.054 1.2E-06 35.0 3.1 20 148-167 3-22 (26)
12 PTZ00014 myosin-A; Provisional 93.5 0.2 4.4E-06 56.7 7.7 40 149-191 778-817 (821)
13 KOG2128 Ras GTPase-activating 93.3 0.23 5E-06 58.4 7.8 71 124-194 563-642 (1401)
14 KOG0520 Uncharacterized conser 90.7 0.29 6.4E-06 56.0 4.7 65 126-190 833-930 (975)
15 KOG4427 E3 ubiquitin protein l 81.4 2.9 6.4E-05 47.2 6.0 23 123-145 27-49 (1096)
16 KOG0377 Protein serine/threoni 78.7 3 6.4E-05 44.7 4.8 35 123-157 14-48 (631)
17 KOG2128 Ras GTPase-activating 73.4 7.6 0.00016 46.4 6.7 64 130-194 539-612 (1401)
18 KOG0161 Myosin class II heavy 72.2 9.3 0.0002 47.4 7.2 42 125-166 772-817 (1930)
19 KOG0162 Myosin class I heavy c 72.1 4.2 9.1E-05 45.9 4.0 40 125-167 695-735 (1106)
20 KOG0164 Myosin class I heavy c 71.5 15 0.00033 41.6 8.1 46 149-198 697-742 (1001)
21 KOG0942 E3 ubiquitin protein l 69.6 3.9 8.5E-05 46.9 3.2 26 120-145 23-48 (1001)
22 COG5022 Myosin heavy chain [Cy 68.7 46 0.00099 40.4 11.5 67 124-191 791-859 (1463)
23 KOG0161 Myosin class II heavy 65.9 23 0.00049 44.2 8.7 46 146-191 771-816 (1930)
24 KOG0163 Myosin class VI heavy 55.1 38 0.00083 38.9 7.4 35 123-157 810-845 (1259)
25 PF08763 Ca_chan_IQ: Voltage g 35.1 44 0.00096 23.8 2.7 21 125-145 8-28 (35)
26 KOG4427 E3 ubiquitin protein l 32.2 1.2E+02 0.0027 35.0 6.9 23 146-168 28-50 (1096)
27 KOG0942 E3 ubiquitin protein l 30.9 65 0.0014 37.6 4.6 23 146-168 27-49 (1001)
28 PF15157 IQ-like: IQ-like 28.4 43 0.00094 28.5 2.1 21 125-145 46-66 (97)
29 KOG0163 Myosin class VI heavy 27.0 80 0.0017 36.4 4.4 20 149-168 814-833 (1259)
30 KOG0165 Microtubule-associated 24.8 1.3E+02 0.0027 34.9 5.4 23 124-146 941-963 (1023)
31 KOG0377 Protein serine/threoni 21.8 1.7E+02 0.0038 31.9 5.5 24 144-167 13-36 (631)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.80 E-value=2.5e-05 Score=48.43 Aligned_cols=21 Identities=57% Similarity=1.045 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 037367 126 ERAATLIQSYYRGYLARRALR 146 (405)
Q Consensus 126 e~AAI~IQsafRGyLaRr~yr 146 (405)
+.|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999873
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.79 E-value=8.6e-05 Score=83.02 Aligned_cols=67 Identities=27% Similarity=0.312 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAH 193 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~ 193 (405)
.....+++.||+.+|||+.|+.| +.+++++.||+++||+++|+.. + ...|++.||..+|++..|+..
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y 737 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRY 737 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHH
Confidence 34567888899999999999999 8899999999999999999822 2 556777777777777766543
No 3
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=97.60 E-value=4.9e-05 Score=64.89 Aligned_cols=14 Identities=79% Similarity=1.047 Sum_probs=13.8
Q ss_pred CCCCcccccccccC
Q 037367 392 VPSYMAPTQSAKAK 405 (405)
Q Consensus 392 ~PsYMa~TqSakAK 405 (405)
+|+|||+|||||||
T Consensus 34 ~PsYMa~TeSakAK 47 (102)
T PF13178_consen 34 LPSYMAATESAKAK 47 (102)
T ss_pred CCCccchhhhhhhh
Confidence 99999999999998
No 4
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.30 E-value=0.00023 Score=46.20 Aligned_cols=21 Identities=52% Similarity=0.806 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y 145 (405)
.+.+|++||+.||||++|+.|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999988
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.96 E-value=0.004 Score=70.03 Aligned_cols=67 Identities=27% Similarity=0.280 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 122 HSKEERAATLIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL 191 (405)
Q Consensus 122 ~~ree~AAI~IQsafRGyLaRr~yr~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~ 191 (405)
+.....+++.||+.+||+++|+......+++.||..+|+++.|++| .....+++.||+.+|++..|.
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 5577889999999999999998444567889999999999999999 456779999999999999987
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.47 E-value=0.0045 Score=69.71 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHH
Q 037367 127 RAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 127 ~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~ 167 (405)
..++.||++||||++|+.| +.+.++++||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888888888888 5677888888888888887653
No 7
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.41 E-value=0.002 Score=72.90 Aligned_cols=70 Identities=29% Similarity=0.375 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMT-------MRCMQALVRVQARVRARRLQLAHE 194 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~t-------Lr~~qAavrIQa~vR~~r~R~s~e 194 (405)
-..||..||..||||+.|+.| -.+.-+|+||+.+||+.+|++|... -...-++-++|+.+|+++.+...|
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 456999999999999999999 7778899999999999999999521 134556778899999988776544
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.07 E-value=0.0079 Score=37.20 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q 037367 149 KGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~ 167 (405)
+++|.||+.|||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5788999999999998876
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.63 E-value=0.03 Score=61.93 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL 191 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~ 191 (405)
.-.-++.||++|||+++|.+| +++.+++.|+ ++|.+.++- .+..||.++|+++.+.
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r 751 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMR 751 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhcc
Confidence 345789999999999999999 5555555556 888555443 3346788888887665
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.30 E-value=0.055 Score=63.63 Aligned_cols=44 Identities=34% Similarity=0.470 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 124 ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~ 167 (405)
.....++.||++|||++.|++| +..+.+..+|.+.+|..+++.+
T Consensus 743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~ 787 (1463)
T COG5022 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLV 787 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 5678999999999999999999 7777776677766766666543
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.31 E-value=0.054 Score=35.01 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhHHHHHHH
Q 037367 148 LKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 148 lk~iVrLQAlvRG~lvRrq~ 167 (405)
.++++.||+.+||+++|+++
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46788899999999998877
No 12
>PTZ00014 myosin-A; Provisional
Probab=93.47 E-value=0.2 Score=56.74 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 149 KGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL 191 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~ 191 (405)
..++.||+++||+++|+++ ++..+++++||+.+|++..++
T Consensus 778 ~~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 3577899999999999998 455789999999999999875
No 13
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=93.31 E-value=0.23 Score=58.38 Aligned_cols=71 Identities=27% Similarity=0.343 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHhhhHH---HHHH--HHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLA---RRAL--RALKGLVRLQALVRGHNVRKQAQMT----MRCMQALVRVQARVRARRLQLAHE 194 (405)
Q Consensus 124 ree~AAI~IQsafRGyLa---Rr~y--r~lk~iVrLQAlvRG~lvRrq~~~t----Lr~~qAavrIQa~vR~~r~R~s~e 194 (405)
......+-||..+|||+. +..| ...+-+|.+|++.||+++|+.+... ..+|.+.+.||+.+|.+..|..-.
T Consensus 563 ~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~ 642 (1401)
T KOG2128|consen 563 KQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYK 642 (1401)
T ss_pred hcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHH
Confidence 466788999999999994 2223 5678999999999999999988643 369999999999999999886443
No 14
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=90.70 E-value=0.29 Score=55.99 Aligned_cols=65 Identities=31% Similarity=0.338 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH--------HH---HHHHHHHHHhhHHHHHHHH----------------------HHHH
Q 037367 126 ERAATLIQSYYRGYLARRALRA--------LK---GLVRLQALVRGHNVRKQAQ----------------------MTMR 172 (405)
Q Consensus 126 e~AAI~IQsafRGyLaRr~yr~--------lk---~iVrLQAlvRG~lvRrq~~----------------------~tLr 172 (405)
..-+|+||+++|||-.|+.|+. .+ ..-++|.-+||+..++.+. ...+
T Consensus 833 r~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r 912 (975)
T KOG0520|consen 833 RQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEER 912 (975)
T ss_pred CCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999998821 12 2335677778876544221 1235
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037367 173 CMQALVRVQARVRARRLQ 190 (405)
Q Consensus 173 ~~qAavrIQa~vR~~r~R 190 (405)
..+|+++||+.+|.+..+
T Consensus 913 ~~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 913 LTRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHHhcCHHHH
Confidence 677888899888887766
No 15
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.39 E-value=2.9 Score=47.21 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~y 145 (405)
.+.+.||+.||..+|||++|++|
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999988
No 16
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=78.68 E-value=3 Score=44.70 Aligned_cols=35 Identities=37% Similarity=0.446 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRALRALKGLVRLQAL 157 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~yr~lk~iVrLQAl 157 (405)
.+--+|||.||++||+|.||..-+.+-....+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 35578999999999999999988766666666765
No 17
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=73.42 E-value=7.6 Score=46.39 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=47.4
Q ss_pred HHHHHHHhhhHHHHHHHHH--------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 130 TLIQSYYRGYLARRALRAL--------KGLVRLQALVRGHNV--RKQAQMTMRCMQALVRVQARVRARRLQLAHE 194 (405)
Q Consensus 130 I~IQsafRGyLaRr~yr~l--------k~iVrLQAlvRG~lv--Rrq~~~tLr~~qAavrIQa~vR~~r~R~s~e 194 (405)
.+||+..|||..|-.++.+ ..++.||++|||++. -+.. .......-++.+|+..|+...|....
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~-~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDV-YLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHH-HHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 3459999999999988433 367889999999995 1111 22345667899999999999987543
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.20 E-value=9.3 Score=47.44 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL----RALKGLVRLQALVRGHNVRKQ 166 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y----r~lk~iVrLQAlvRG~lvRrq 166 (405)
...-.+.+|+.+||||+|+.| ..+.+++.||.-+|-++..+.
T Consensus 772 ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 772 LSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566778888888888777 345677777877777765543
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=72.14 E-value=4.2 Score=45.94 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~ 167 (405)
-+--|.+||++||.|++||.| +++.-..+| +-|..-||++
T Consensus 695 ~d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~ 735 (1106)
T KOG0162|consen 695 WDGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRY 735 (1106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHH
Confidence 346899999999999999999 665555443 3455555554
No 20
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=71.50 E-value=15 Score=41.60 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037367 149 KGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERLQK 198 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~e~~~~ 198 (405)
.-++.||..|||.++|.++ .+...+++.|+ .+|.+.++-.-.-+++
T Consensus 697 ~lvtllQK~~RG~~~R~ry---~rmka~~~ii~-wyR~~K~ks~v~el~~ 742 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRY---RRMKASATIIR-WYRRYKLKSYVQELQR 742 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4567889999999999998 33333444555 8888887765444443
No 21
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=3.9 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=22.6
Q ss_pred CchhhHHHHHHHHHHHHhhhHHHHHH
Q 037367 120 GRHSKEERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 120 ~~~~ree~AAI~IQsafRGyLaRr~y 145 (405)
.+..+++.+||+||+.||||++|++.
T Consensus 23 ee~rk~e~~av~vQs~~Rg~~~r~~~ 48 (1001)
T KOG0942|consen 23 EEERKQEKNAVKVQSFWRGFRVRHNQ 48 (1001)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34567889999999999999999977
No 22
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=68.73 E-value=46 Score=40.43 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLARRAL-RALKGLVRLQ-ALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL 191 (405)
Q Consensus 124 ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQ-AlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~ 191 (405)
....++++||..+|.+..|+.| .....++.|| .+.+...++... +.-..+.+.+.+|+.+|....+.
T Consensus 791 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~k 859 (1463)
T COG5022 791 LKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAKK 859 (1463)
T ss_pred hHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhhH
Confidence 3456888888888888888888 5556677777 566666555532 22345567777777776665544
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=65.90 E-value=23 Score=44.23 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 146 RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQL 191 (405)
Q Consensus 146 r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~ 191 (405)
..-.-++.+|+.|||+++|+.+......+.|+..||..+|.|+..+
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556788999999999999999888889999999999999996543
No 24
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=55.08 E-value=38 Score=38.87 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRAL-RALKGLVRLQAL 157 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAl 157 (405)
.-+..+++++|+..||||+|+++ ....++.++-++
T Consensus 810 ~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l 845 (1259)
T KOG0163|consen 810 IYRAECVLKAQRIARGYLARKRHRPRIAGIRKINAL 845 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Confidence 34567899999999999999999 344445554443
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=35.11 E-value=44 Score=23.81 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y 145 (405)
.--|+..||-.||.|..|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999998754
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.18 E-value=1.2e+02 Score=34.99 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 037367 146 RALKGLVRLQALVRGHNVRKQAQ 168 (405)
Q Consensus 146 r~lk~iVrLQAlvRG~lvRrq~~ 168 (405)
+.-.+++.||+++|||++|+++.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999885
No 27
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.94 E-value=65 Score=37.55 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 037367 146 RALKGLVRLQALVRGHNVRKQAQ 168 (405)
Q Consensus 146 r~lk~iVrLQAlvRG~lvRrq~~ 168 (405)
+..+++|.+|+++||+.+|++..
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 56689999999999999998763
No 28
>PF15157 IQ-like: IQ-like
Probab=28.42 E-value=43 Score=28.55 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y 145 (405)
.+.-+.+||.+||-|++|...
T Consensus 46 Leskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 456678899999999999653
No 29
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=27.03 E-value=80 Score=36.45 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 037367 149 KGLVRLQALVRGHNVRKQAQ 168 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~~ 168 (405)
..++++|+++||+++|+++.
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~ 833 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHR 833 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 46789999999999999875
No 30
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=24.78 E-value=1.3e+02 Score=34.89 Aligned_cols=23 Identities=39% Similarity=0.761 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLARRALR 146 (405)
Q Consensus 124 ree~AAI~IQsafRGyLaRr~yr 146 (405)
....||+.||...|||.+|+.|+
T Consensus 941 nkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888887773
No 31
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=21.77 E-value=1.7e+02 Score=31.89 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 037367 144 ALRALKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 144 ~yr~lk~iVrLQAlvRG~lvRrq~ 167 (405)
.-++.++++.||.+.|++.+|..+
T Consensus 13 s~raikaAilIQkWYRr~~ARle~ 36 (631)
T KOG0377|consen 13 STRAIKAAILIQKWYRRYEARLEA 36 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336789999999999999999876
Done!