Query 037367
Match_columns 405
No_of_seqs 314 out of 1172
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 19:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.2 3.2E-11 1.1E-15 90.7 7.7 54 124-178 3-57 (58)
2 2dfs_A Myosin-5A; myosin-V, in 99.0 4.9E-10 1.7E-14 126.0 10.4 90 103-193 793-883 (1080)
3 1n2d_C IQ2 and IQ3 motifs from 98.9 4E-09 1.4E-13 76.2 6.6 42 126-167 3-47 (48)
4 2dfs_A Myosin-5A; myosin-V, in 98.8 1.1E-08 3.9E-13 115.0 11.9 67 126-193 768-835 (1080)
5 1n2d_C IQ2 and IQ3 motifs from 98.5 3.1E-07 1.1E-11 66.2 7.0 44 148-192 3-46 (48)
6 2ix7_C Myosin-5A; contractIle 98.1 1.2E-05 4.1E-10 60.1 8.0 47 147-196 4-50 (58)
7 1wdc_A Scallop myosin; calcium 97.5 0.00021 7E-09 54.5 6.6 42 125-166 5-50 (64)
8 2bl0_A Major plasmodial myosin 97.5 0.00016 5.5E-09 55.0 5.5 39 127-165 5-47 (63)
9 1wdc_A Scallop myosin; calcium 97.4 0.00054 1.8E-08 52.2 7.5 45 148-192 6-50 (64)
10 2l53_B CAM, voltage-gated sodi 97.4 0.00013 4.5E-09 49.1 3.3 23 123-145 3-25 (31)
11 2bl0_A Major plasmodial myosin 97.3 0.00047 1.6E-08 52.4 6.7 45 148-192 4-48 (63)
12 2kxw_B Sodium channel protein 97.3 9.9E-05 3.4E-09 48.2 2.4 22 123-144 3-24 (27)
13 1kk8_A Myosin heavy chain, str 97.1 0.00065 2.2E-08 74.9 7.8 44 124-167 777-824 (837)
14 1i84_S Smooth muscle myosin he 96.0 0.0073 2.5E-07 68.5 6.8 42 125-166 791-836 (1184)
15 1kk8_A Myosin heavy chain, str 95.9 0.016 5.5E-07 63.9 8.7 47 146-192 777-823 (837)
16 3gn4_A Myosin-VI; unconvention 95.4 0.027 9.4E-07 50.2 6.6 48 109-158 30-78 (148)
17 1i84_S Smooth muscle myosin he 94.4 0.066 2.2E-06 60.8 7.9 46 147-192 791-836 (1184)
18 4anj_A Unconventional myosin-V 89.3 0.45 1.5E-05 53.8 6.5 41 125-166 774-815 (1052)
19 1w7j_A Myosin VA; motor protei 87.3 0.33 1.1E-05 53.3 3.7 21 125-145 767-787 (795)
20 4dck_A Sodium channel protein 86.8 0.43 1.5E-05 43.2 3.6 24 123-146 127-150 (168)
21 3gn4_A Myosin-VI; unconvention 82.3 1.5 5.2E-05 39.0 4.9 23 149-171 46-68 (148)
22 2l53_B CAM, voltage-gated sodi 67.6 5.9 0.0002 26.4 3.5 20 173-192 5-24 (31)
23 2kxw_B Sodium channel protein 62.6 7.6 0.00026 25.1 3.2 19 173-191 5-23 (27)
24 4anj_A Unconventional myosin-V 60.3 10 0.00035 43.0 6.0 41 149-192 775-815 (1052)
25 1w7j_A Myosin VA; motor protei 48.9 16 0.00055 40.1 5.0 21 147-167 767-787 (795)
26 2f3y_B Voltage-dependent L-typ 29.7 33 0.0011 22.0 2.1 18 128-145 4-21 (26)
27 3dvk_B Voltage-dependent R-typ 27.9 24 0.00082 22.1 1.3 17 126-142 6-22 (23)
28 2be6_D Voltage-dependent L-typ 26.3 49 0.0017 22.8 2.7 21 125-145 10-30 (37)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.21 E-value=3.2e-11 Score=90.69 Aligned_cols=54 Identities=30% Similarity=0.332 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALV 178 (405)
Q Consensus 124 ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAav 178 (405)
+.+.|||+||+.||||++|+.| ..+.+++.||+++||+++|+.+ ..++...|++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA~ 57 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcc
Confidence 5788999999999999999999 7778999999999999999999 5666666654
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.03 E-value=4.9e-10 Score=125.98 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 037367 103 AVAAAQAAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQ 181 (405)
Q Consensus 103 av~aaqaA~~vvrl~~~~~~~ree~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQ 181 (405)
|+..+|+..+++..+..-...++..||++||++||||++|+.| +.+.+++.||+++||+++|+.+ ..++...+++.||
T Consensus 793 aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ 871 (1080)
T 2dfs_A 793 AAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQ 871 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4445666666665443333456788999999999999999999 7788999999999999999988 5566667888888
Q ss_pred HHHHHHHHHHHH
Q 037367 182 ARVRARRLQLAH 193 (405)
Q Consensus 182 a~vR~~r~R~s~ 193 (405)
+.+|++++|...
T Consensus 872 ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 872 KHVRGWLARVHY 883 (1080)
T ss_dssp HHHTTTHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 888888777543
No 3
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.87 E-value=4e-09 Score=76.21 Aligned_cols=42 Identities=29% Similarity=0.517 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhHHHHHH-HHHH--HHHHHHHHHhhHHHHHHH
Q 037367 126 ERAATLIQSYYRGYLARRAL-RALK--GLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 126 e~AAI~IQsafRGyLaRr~y-r~lk--~iVrLQAlvRG~lvRrq~ 167 (405)
..+||.||+.||||++|+.| ..+. +++.||+++||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 35899999999999999998 3333 888999999999998876
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.83 E-value=1.1e-08 Score=114.99 Aligned_cols=67 Identities=28% Similarity=0.350 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 126 ERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAH 193 (405)
Q Consensus 126 e~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~ 193 (405)
..+|+.||++||||++|+.| +.+.+++.||+++||+++|+++ ..++...|+++||+.||+|++|+..
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence 45666666666666666666 5556666666666666666666 4455566666666666666666543
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=3.1e-07 Score=66.18 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
+.+++.||+.+||+++|+.+ ..++...|++.||+.+||+.+|..
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHh
Confidence 57899999999999999999 667778899999999999998863
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.09 E-value=1.2e-05 Score=60.06 Aligned_cols=47 Identities=26% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 147 ALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLAHERL 196 (405)
Q Consensus 147 ~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s~e~~ 196 (405)
...+++.||+.+||+++|+.| +....+++.||+.+||+.+|.....+
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999 34457999999999999999866543
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.51 E-value=0.00021 Score=54.50 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRKQ 166 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRrq 166 (405)
....++.||+.+|||++|+.| +. ..++..||..+|+++.++.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344566666666666666666 21 3455566666666665543
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.47 E-value=0.00016 Score=55.01 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHH
Q 037367 127 RAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRK 165 (405)
Q Consensus 127 ~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRr 165 (405)
..++.||+.+|||++|+.| +. ..++..||..+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555555555555 11 334444455555554443
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.38 E-value=0.00054 Score=52.17 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
...++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 456899999999999999997766778888899999999988763
No 10
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.36 E-value=0.00013 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~y 145 (405)
.+|+.||++||.+||+|+.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999764
No 11
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.33 E-value=0.00047 Score=52.39 Aligned_cols=45 Identities=20% Similarity=0.026 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 148 LKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 148 lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
...++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356889999999999999997766778888899999999988763
No 12
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.33 E-value=9.9e-05 Score=48.18 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRA 144 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~ 144 (405)
.+++.||++||.+||+||.++.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999853
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.13 E-value=0.00065 Score=74.90 Aligned_cols=44 Identities=27% Similarity=0.381 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHH-HH---HHHHHHHHHHHhhHHHHHHH
Q 037367 124 KEERAATLIQSYYRGYLARRAL-RA---LKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 124 ree~AAI~IQsafRGyLaRr~y-r~---lk~iVrLQAlvRG~lvRrq~ 167 (405)
+...+|+.||++||||++|+.| +. +.+++.||+.+||+++||..
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 4456788999999999999998 33 57888899999999888876
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.04 E-value=0.0073 Score=68.55 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-H---HHHHHHHHHHHHhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-R---ALKGLVRLQALVRGHNVRKQ 166 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r---~lk~iVrLQAlvRG~lvRrq 166 (405)
...+++.||++||||++|+.| + .+.+++.||+.+||++.++.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346899999999999999999 3 24789999999999999865
No 15
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.93 E-value=0.016 Score=63.95 Aligned_cols=47 Identities=23% Similarity=0.165 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 146 RALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 146 r~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
+....++.||+++||+++|+++...+....|++.||+.+|++..++.
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44567889999999999999995444556899999999999998864
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.43 E-value=0.027 Score=50.18 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=31.8
Q ss_pred HHHHHHHhccCCchhhHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHH
Q 037367 109 AAAKVVRLAGYGRHSKEERAATLIQSYYRGYLARRALRA-LKGLVRLQALV 158 (405)
Q Consensus 109 aA~~vvrl~~~~~~~ree~AAI~IQsafRGyLaRr~yr~-lk~iVrLQAlv 158 (405)
++--|++|.. ...=+..|+|+||+.+||||+|+.++- ..|+.++.++.
T Consensus 30 ~~lsvIKLkn--KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 30 CSLSVIKLKN--KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555666552 233456788888888888888888833 36666666553
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.42 E-value=0.066 Score=60.81 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 147 ALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 147 ~lk~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
....++.||+.|||+++|++|...+....|++.||+.+|+|..++.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467889999999999999996555567899999999999988753
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=89.34 E-value=0.45 Score=53.82 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL-RALKGLVRLQALVRGHNVRKQ 166 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y-r~lk~iVrLQAlvRG~lvRrq 166 (405)
...+|+.||. +|||++|++| +++.+++.||.+.|+...|+.
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777775 7999999999 778888999988888766554
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=87.31 E-value=0.33 Score=53.30 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y 145 (405)
...+|+.||++||||++|++|
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888888
No 20
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=86.83 E-value=0.43 Score=43.23 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHH
Q 037367 123 SKEERAATLIQSYYRGYLARRALR 146 (405)
Q Consensus 123 ~ree~AAI~IQsafRGyLaRr~yr 146 (405)
.+++.||++||.+||.|+.|+.++
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 568899999999999999988773
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=82.27 E-value=1.5 Score=38.97 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 037367 149 KGLVRLQALVRGHNVRKQAQMTM 171 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~~~tL 171 (405)
.++|+||+.+|||++|+++...+
T Consensus 46 ~~~i~iQktvR~~L~rkkhkPRi 68 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKPRI 68 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Confidence 67899999999999999985433
No 22
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=67.63 E-value=5.9 Score=26.43 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037367 173 CMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 173 ~~qAavrIQa~vR~~r~R~s 192 (405)
..-+++.||..||+++.+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45688889999999888753
No 23
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=62.57 E-value=7.6 Score=25.05 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037367 173 CMQALVRVQARVRARRLQL 191 (405)
Q Consensus 173 ~~qAavrIQa~vR~~r~R~ 191 (405)
...+++.||..||+++.+.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4568889999999988764
No 24
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=60.33 E-value=10 Score=42.97 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037367 149 KGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLA 192 (405)
Q Consensus 149 k~iVrLQAlvRG~lvRrq~~~tLr~~qAavrIQa~vR~~r~R~s 192 (405)
..++.||..+||+++|+++ .+...+++.||...|.++.|..
T Consensus 775 ~~~~~~iq~~r~~l~r~~~---~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 775 DHLAELVKRVNHWLICSRW---KKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555568999999999 3445678888887777776653
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=48.87 E-value=16 Score=40.14 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 037367 147 ALKGLVRLQALVRGHNVRKQA 167 (405)
Q Consensus 147 ~lk~iVrLQAlvRG~lvRrq~ 167 (405)
..+.++.||+.+||+++|+++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888877
No 26
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=29.66 E-value=33 Score=21.98 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 037367 128 AATLIQSYYRGYLARRAL 145 (405)
Q Consensus 128 AAI~IQsafRGyLaRr~y 145 (405)
|...||-.||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999988754
No 27
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=27.87 E-value=24 Score=22.07 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhhHHH
Q 037367 126 ERAATLIQSYYRGYLAR 142 (405)
Q Consensus 126 e~AAI~IQsafRGyLaR 142 (405)
--|+..||-.||.+..|
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45889999999988765
No 28
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=26.34 E-value=49 Score=22.84 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 037367 125 EERAATLIQSYYRGYLARRAL 145 (405)
Q Consensus 125 ee~AAI~IQsafRGyLaRr~y 145 (405)
.--|...||-.||.|..|+.-
T Consensus 10 KfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999998764
Done!