BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037368
(823 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 349 AINLVQSQQADAAATAEVLRKYGDH---LYSKQDYDEAMSQYILTI----GHLEPSYVIQ 401
A+ ++ + D E+L +YG H + K YD+ Y++T G L + Q
Sbjct: 51 AVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ 110
Query: 402 KFLDAQR----IYNLTNYLEKLHEKGFASKD 428
KF + ++ +T +E LH +G +D
Sbjct: 111 KFFSEREASAVLFTITKTVEYLHAQGVVHRD 141
>pdb|2KIE|A Chain A, A Ph Domain Within Ocrl Bridges Clathrin Mediated Membrane
Trafficking To Phosphoinositide Metabolis
Length = 124
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 134 TSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180
+ F ++EA LLI I ++GC ++GD RER RF++ + C
Sbjct: 65 SHFRCVQEAEETLLIDIASNSGCKIRVQGDWIRER--RFEIPDEEHC 109
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 349 AINLVQSQQADAAATAEVLRKYGDH---LYSKQDYDEAMSQYILTI----GHLEPSYVIQ 401
A+ ++ + D E+L +YG H + K YD+ Y++T G L + Q
Sbjct: 51 AVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQ 110
Query: 402 KFLDAQR----IYNLTNYLEKLHEKGFASKD 428
KF + ++ +T +E LH +G +D
Sbjct: 111 KFFSEREASAVLFTITKTVEYLHAQGVVHRD 141
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 83 GEDEQVSAQQSAV--CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL- 139
G ++ + QQ A+ C+K +D+ GT T+ I IL+ +F E T LVL
Sbjct: 49 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE---TQALVLA 105
Query: 140 ---EEAPPI--LLIAIG--LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRV 189
E A I +++A+G + C CI G R + KLQ + V+G RV
Sbjct: 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ--KLQAEAPHIVVGTPGRV 160
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 349 AINLVQSQQADAAATAEVLRKYGDH---LYSKQDYDEAMSQYILTI----GHLEPSYVIQ 401
A+ ++ + D + E+L +YG H + K YD+ Y++T G L + Q
Sbjct: 56 AVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQ 115
Query: 402 KFLDAQR----IYNLTNYLEKLHEKGFASKD 428
KF + ++ + +E LH +G +D
Sbjct: 116 KFFSEREASFVLHTIGKTVEYLHSQGVVHRD 146
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 349 AINLVQSQQADAAATAEVLRKYGDH---LYSKQDYDEAMSQYILTI----GHLEPSYVIQ 401
A+ ++ + D + E+L +YG H + K YD+ Y++T G L + Q
Sbjct: 56 AVKVIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQ 115
Query: 402 KFLDAQR----IYNLTNYLEKLHEKGFASKD 428
KF + ++ + +E LH +G +D
Sbjct: 116 KFFSEREASFVLHTIGKTVEYLHSQGVVHRD 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,953,024
Number of Sequences: 62578
Number of extensions: 999673
Number of successful extensions: 2354
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2351
Number of HSP's gapped (non-prelim): 17
length of query: 823
length of database: 14,973,337
effective HSP length: 107
effective length of query: 716
effective length of database: 8,277,491
effective search space: 5926683556
effective search space used: 5926683556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)