Query 037368
Match_columns 823
No_of_seqs 299 out of 1769
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2114 Vacuolar assembly/sort 100.0 3E-117 6E-122 970.3 66.3 790 1-823 3-818 (933)
2 KOG2066 Vacuolar assembly/sort 100.0 4.8E-61 1E-65 525.1 48.5 651 22-814 36-752 (846)
3 KOG2063 Vacuolar assembly/sort 100.0 2.2E-39 4.8E-44 371.6 50.3 678 23-808 13-796 (877)
4 KOG2034 Vacuolar sorting prote 100.0 3.9E-40 8.5E-45 366.8 33.6 446 286-821 307-792 (911)
5 KOG0271 Notchless-like WD40 re 99.9 1E-24 2.2E-29 221.1 25.2 283 9-329 98-478 (480)
6 KOG0272 U4/U6 small nuclear ri 99.9 4.3E-24 9.4E-29 219.5 21.1 263 26-329 176-457 (459)
7 KOG0279 G protein beta subunit 99.9 1.7E-22 3.6E-27 197.9 27.0 268 27-331 17-312 (315)
8 KOG0985 Vesicle coat protein c 99.9 3.2E-22 7E-27 223.2 29.7 511 134-769 68-671 (1666)
9 KOG0315 G-protein beta subunit 99.9 2.2E-22 4.8E-27 193.8 23.4 264 36-338 11-294 (311)
10 KOG0272 U4/U6 small nuclear ri 99.9 4.4E-23 9.5E-28 212.2 15.8 231 22-291 213-458 (459)
11 KOG0315 G-protein beta subunit 99.9 2E-21 4.3E-26 187.2 21.7 241 25-304 40-301 (311)
12 KOG0263 Transcription initiati 99.9 4.4E-21 9.6E-26 212.0 21.1 231 25-294 378-650 (707)
13 KOG0291 WD40-repeat-containing 99.9 4.7E-19 1E-23 193.9 36.4 193 26-251 351-550 (893)
14 KOG0295 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 193.4 19.4 237 27-302 110-373 (406)
15 KOG0286 G-protein beta subunit 99.9 8E-21 1.7E-25 187.2 19.3 193 22-249 141-343 (343)
16 KOG0276 Vesicle coat complex C 99.9 2.4E-18 5.2E-23 184.7 38.1 195 25-250 55-256 (794)
17 KOG0319 WD40-repeat-containing 99.9 3.5E-19 7.6E-24 194.9 31.8 314 25-389 323-659 (775)
18 KOG0279 G protein beta subunit 99.9 8.3E-20 1.8E-24 179.2 24.0 231 22-292 59-312 (315)
19 KOG0271 Notchless-like WD40 re 99.9 2.4E-20 5.1E-25 189.6 19.3 238 56-333 107-398 (480)
20 KOG0263 Transcription initiati 99.9 8.6E-21 1.9E-25 209.8 16.6 190 28-251 455-649 (707)
21 KOG0285 Pleiotropic regulator 99.8 3.2E-19 6.9E-24 180.0 22.6 268 27-332 153-439 (460)
22 KOG0266 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 197.8 27.8 269 26-331 160-453 (456)
23 KOG0284 Polyadenylation factor 99.8 4E-20 8.6E-25 189.6 13.4 228 25-291 138-378 (464)
24 KOG0291 WD40-repeat-containing 99.8 3.2E-18 6.9E-23 187.5 27.9 231 25-295 307-552 (893)
25 cd00200 WD40 WD40 domain, foun 99.8 3.5E-17 7.6E-22 172.2 32.9 265 26-329 10-288 (289)
26 KOG0293 WD40 repeat-containing 99.8 1.8E-18 4E-23 177.4 20.9 269 25-331 224-512 (519)
27 KOG0316 Conserved WD40 repeat- 99.8 4.4E-18 9.5E-23 163.0 21.9 258 27-326 19-294 (307)
28 KOG0266 WD40 repeat-containing 99.8 6.6E-18 1.4E-22 191.5 25.3 230 27-293 205-454 (456)
29 KOG0292 Vesicle coat complex C 99.8 7.1E-16 1.5E-20 171.5 39.8 208 22-251 89-321 (1202)
30 KOG0292 Vesicle coat complex C 99.8 5.7E-18 1.2E-22 187.9 23.3 234 27-299 11-286 (1202)
31 KOG0273 Beta-transducin family 99.8 2.4E-17 5.2E-22 172.2 26.2 263 26-328 236-520 (524)
32 KOG0294 WD40 repeat-containing 99.8 9E-18 2E-22 167.4 22.0 229 26-295 44-283 (362)
33 KOG0265 U5 snRNP-specific prot 99.8 2E-17 4.3E-22 164.0 23.4 264 28-331 50-337 (338)
34 KOG0281 Beta-TrCP (transducin 99.8 5.1E-19 1.1E-23 177.6 12.1 227 25-295 197-430 (499)
35 KOG1446 Histone H3 (Lys4) meth 99.8 2.6E-17 5.7E-22 164.9 23.9 231 26-293 59-303 (311)
36 KOG0286 G-protein beta subunit 99.8 1.3E-16 2.8E-21 157.7 28.2 239 26-297 56-307 (343)
37 PTZ00420 coronin; Provisional 99.8 1E-16 2.2E-21 182.2 31.0 226 41-297 50-297 (568)
38 KOG0265 U5 snRNP-specific prot 99.8 8.2E-18 1.8E-22 166.8 19.1 213 34-279 101-329 (338)
39 KOG0283 WD40 repeat-containing 99.8 9E-18 1.9E-22 187.6 21.4 197 57-293 362-576 (712)
40 KOG0310 Conserved WD40 repeat- 99.8 1.4E-17 3.1E-22 175.0 20.9 280 3-329 13-306 (487)
41 PLN00181 protein SPA1-RELATED; 99.8 1E-16 2.3E-21 195.1 30.4 230 25-292 532-792 (793)
42 KOG0268 Sof1-like rRNA process 99.8 5.2E-18 1.1E-22 171.7 15.4 282 25-351 66-368 (433)
43 KOG0276 Vesicle coat complex C 99.8 9.8E-17 2.1E-21 172.4 25.6 231 25-294 13-258 (794)
44 KOG0645 WD40 repeat protein [G 99.8 6.8E-16 1.5E-20 151.2 29.0 268 27-331 16-310 (312)
45 KOG0282 mRNA splicing factor [ 99.8 8.3E-18 1.8E-22 176.4 16.3 227 28-295 217-464 (503)
46 KOG0318 WD40 repeat stress pro 99.8 1.6E-16 3.4E-21 168.1 25.9 263 7-293 302-602 (603)
47 cd00200 WD40 WD40 domain, foun 99.8 1.8E-16 4E-21 166.7 26.6 227 27-291 53-289 (289)
48 PLN00181 protein SPA1-RELATED; 99.8 7.4E-16 1.6E-20 187.7 35.0 229 27-295 485-740 (793)
49 KOG0274 Cdc4 and related F-box 99.8 1.5E-16 3.2E-21 180.3 26.5 266 25-334 208-484 (537)
50 KOG0313 Microtubule binding pr 99.8 2E-16 4.3E-21 161.5 24.2 239 23-294 103-377 (423)
51 KOG0306 WD40-repeat-containing 99.8 3.1E-17 6.7E-22 179.7 19.7 234 29-296 418-667 (888)
52 KOG0319 WD40-repeat-containing 99.8 1.6E-16 3.5E-21 174.2 25.2 267 36-359 378-663 (775)
53 PTZ00421 coronin; Provisional 99.7 5.9E-16 1.3E-20 175.2 29.3 210 59-299 70-296 (493)
54 KOG0310 Conserved WD40 repeat- 99.7 3E-16 6.4E-21 165.2 23.7 226 26-290 69-306 (487)
55 PTZ00421 coronin; Provisional 99.7 1.7E-15 3.6E-20 171.5 28.6 195 26-252 76-291 (493)
56 KOG0772 Uncharacterized conser 99.7 2.1E-16 4.4E-21 166.6 19.5 235 26-290 215-484 (641)
57 KOG0295 WD40 repeat-containing 99.7 1.2E-16 2.6E-21 162.2 16.9 226 28-291 153-404 (406)
58 KOG0281 Beta-TrCP (transducin 99.7 2.5E-17 5.4E-22 165.5 11.8 234 22-297 233-481 (499)
59 KOG0645 WD40 repeat protein [G 99.7 2.5E-15 5.4E-20 147.3 25.0 205 56-293 6-225 (312)
60 KOG0274 Cdc4 and related F-box 99.7 5.2E-16 1.1E-20 175.9 23.4 228 27-298 251-487 (537)
61 smart00299 CLH Clathrin heavy 99.7 7.6E-17 1.6E-21 152.8 13.8 131 564-757 6-139 (140)
62 KOG0284 Polyadenylation factor 99.7 8.9E-17 1.9E-21 165.2 14.7 264 29-332 102-380 (464)
63 KOG0289 mRNA splicing factor [ 99.7 1.1E-15 2.4E-20 158.2 22.8 193 28-251 264-460 (506)
64 KOG0277 Peroxisomal targeting 99.7 4.3E-16 9.4E-21 151.1 17.2 221 35-292 73-308 (311)
65 KOG0285 Pleiotropic regulator 99.7 6.1E-16 1.3E-20 156.4 17.2 217 36-293 206-439 (460)
66 KOG0275 Conserved WD40 repeat- 99.7 2.1E-16 4.6E-21 157.4 13.2 232 27-297 215-471 (508)
67 KOG0275 Conserved WD40 repeat- 99.7 1.2E-16 2.6E-21 159.2 10.9 229 25-291 263-507 (508)
68 KOG0288 WD40 repeat protein Ti 99.7 3.6E-16 7.8E-21 161.1 14.1 222 26-290 220-458 (459)
69 KOG0306 WD40-repeat-containing 99.7 1.3E-14 2.9E-19 159.4 26.7 274 25-335 373-667 (888)
70 KOG1538 Uncharacterized conser 99.7 4.7E-12 1E-16 137.3 45.3 159 36-212 25-213 (1081)
71 KOG0301 Phospholipase A2-activ 99.7 1.7E-15 3.6E-20 165.3 18.8 212 36-293 72-288 (745)
72 KOG0318 WD40 repeat stress pro 99.7 1E-13 2.3E-18 147.0 31.2 263 28-328 193-470 (603)
73 KOG0296 Angio-associated migra 99.7 9.1E-14 2E-18 141.6 29.5 265 27-330 66-396 (399)
74 KOG0273 Beta-transducin family 99.7 1.5E-14 3.4E-19 151.4 24.2 272 27-338 180-488 (524)
75 KOG0973 Histone transcription 99.7 1.5E-14 3.3E-19 165.9 26.2 275 27-329 15-353 (942)
76 PTZ00420 coronin; Provisional 99.7 2E-14 4.3E-19 163.7 27.1 193 26-251 75-293 (568)
77 KOG0294 WD40 repeat-containing 99.7 2E-14 4.4E-19 143.7 23.6 254 38-334 4-283 (362)
78 KOG0316 Conserved WD40 repeat- 99.7 4.7E-15 1E-19 142.4 17.4 185 32-253 68-259 (307)
79 KOG0296 Angio-associated migra 99.6 2.3E-14 4.9E-19 146.0 22.7 161 57-251 57-220 (399)
80 KOG1332 Vesicle coat complex C 99.6 1.1E-14 2.5E-19 140.6 19.2 231 31-291 19-284 (299)
81 KOG0289 mRNA splicing factor [ 99.6 2E-14 4.3E-19 149.1 22.1 221 23-277 217-451 (506)
82 KOG1407 WD40 repeat protein [F 99.6 2.5E-14 5.4E-19 139.6 21.2 229 33-303 30-271 (313)
83 KOG0640 mRNA cleavage stimulat 99.6 8E-15 1.7E-19 145.8 16.3 257 36-330 125-424 (430)
84 KOG0277 Peroxisomal targeting 99.6 5.5E-15 1.2E-19 143.6 13.7 190 28-250 107-308 (311)
85 KOG2096 WD40 repeat protein [G 99.6 4.6E-14 9.9E-19 141.1 20.4 239 58-328 80-357 (420)
86 KOG0283 WD40 repeat-containing 99.6 1.8E-14 3.8E-19 161.6 18.9 184 33-251 378-576 (712)
87 KOG0772 Uncharacterized conser 99.6 9.5E-14 2.1E-18 146.8 23.1 286 25-329 166-485 (641)
88 KOG0278 Serine/threonine kinas 99.6 8.5E-15 1.9E-19 141.7 13.8 260 37-335 31-300 (334)
89 KOG0643 Translation initiation 99.6 6.1E-14 1.3E-18 137.3 19.4 272 28-329 13-314 (327)
90 KOG0313 Microtubule binding pr 99.6 4.7E-14 1E-18 144.3 18.7 191 28-250 196-417 (423)
91 KOG0282 mRNA splicing factor [ 99.6 1.1E-14 2.4E-19 153.2 14.2 235 56-327 206-458 (503)
92 KOG0305 Anaphase promoting com 99.6 1.7E-13 3.6E-18 150.1 24.0 255 36-329 189-458 (484)
93 KOG1273 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 137.5 20.8 243 28-293 26-322 (405)
94 KOG1274 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 155.2 22.9 225 29-294 19-263 (933)
95 KOG0647 mRNA export protein (c 99.6 4.7E-13 1E-17 133.3 23.5 255 25-321 27-312 (347)
96 KOG0301 Phospholipase A2-activ 99.6 2.5E-13 5.3E-18 148.6 23.5 256 28-330 17-287 (745)
97 KOG2445 Nuclear pore complex c 99.6 8.7E-13 1.9E-17 131.7 24.3 209 28-252 16-257 (361)
98 KOG0307 Vesicle coat complex C 99.6 2.3E-13 4.9E-18 157.0 23.2 223 36-295 81-329 (1049)
99 KOG0264 Nucleosome remodeling 99.6 7.3E-14 1.6E-18 146.4 17.4 189 35-252 190-405 (422)
100 KOG0299 U3 snoRNP-associated p 99.6 2E-13 4.3E-18 143.0 20.5 254 27-320 144-443 (479)
101 KOG0640 mRNA cleavage stimulat 99.6 4.8E-14 1E-18 140.3 14.5 211 57-295 105-337 (430)
102 KOG0308 Conserved WD40 repeat- 99.6 4.4E-14 9.5E-19 153.2 15.3 258 36-328 38-324 (735)
103 KOG0288 WD40 repeat protein Ti 99.6 2.7E-14 5.8E-19 147.5 12.7 258 29-329 181-458 (459)
104 KOG1539 WD repeat protein [Gen 99.6 1.2E-12 2.7E-17 145.8 26.4 279 25-329 202-645 (910)
105 KOG0270 WD40 repeat-containing 99.5 2.3E-13 5.1E-18 141.9 19.0 225 35-295 192-451 (463)
106 KOG0973 Histone transcription 99.5 4E-13 8.7E-18 154.4 21.5 233 25-297 69-359 (942)
107 KOG0293 WD40 repeat-containing 99.5 1.4E-13 3.1E-18 141.8 15.9 228 27-293 271-513 (519)
108 KOG1446 Histone H3 (Lys4) meth 99.5 7.9E-12 1.7E-16 125.9 27.8 234 25-300 14-269 (311)
109 KOG0305 Anaphase promoting com 99.5 3.6E-13 7.7E-18 147.6 19.7 231 25-295 217-463 (484)
110 KOG0264 Nucleosome remodeling 99.5 6.4E-13 1.4E-17 139.4 20.3 231 36-294 138-405 (422)
111 KOG0300 WD40 repeat-containing 99.5 4.3E-13 9.3E-18 133.8 17.7 239 34-298 159-433 (481)
112 KOG0269 WD40 repeat-containing 99.5 1.4E-13 3.1E-18 152.0 14.6 176 28-233 136-319 (839)
113 KOG0269 WD40 repeat-containing 99.5 1.2E-13 2.6E-18 152.7 13.3 201 35-270 100-319 (839)
114 KOG0646 WD40 repeat protein [G 99.5 9.7E-13 2.1E-17 138.2 19.0 204 25-253 81-309 (476)
115 KOG0299 U3 snoRNP-associated p 99.5 8.3E-13 1.8E-17 138.4 18.0 216 28-278 205-445 (479)
116 KOG1036 Mitotic spindle checkp 99.5 7.6E-12 1.7E-16 125.4 23.7 251 26-321 14-293 (323)
117 KOG0268 Sof1-like rRNA process 99.5 5.2E-13 1.1E-17 135.9 15.5 222 28-291 112-343 (433)
118 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 2.6E-11 5.5E-16 130.0 29.8 243 36-320 2-266 (300)
119 KOG1274 WD40 repeat protein [G 99.5 1.9E-12 4E-17 146.0 21.0 198 24-252 55-263 (933)
120 KOG1332 Vesicle coat complex C 99.5 1.1E-12 2.4E-17 127.0 16.0 243 61-337 8-291 (299)
121 KOG0278 Serine/threonine kinas 99.5 2.9E-13 6.2E-18 131.3 11.7 215 37-293 73-297 (334)
122 KOG0646 WD40 repeat protein [G 99.5 1.1E-12 2.4E-17 137.7 16.4 174 27-231 125-327 (476)
123 PF00637 Clathrin: Region in C 99.4 5E-15 1.1E-19 140.9 -2.3 133 564-758 6-140 (143)
124 KOG0643 Translation initiation 99.4 1.7E-11 3.6E-16 120.4 21.6 197 59-295 5-222 (327)
125 KOG2096 WD40 repeat protein [G 99.4 1.7E-12 3.8E-17 129.9 14.9 192 34-249 198-400 (420)
126 KOG2048 WD40 repeat protein [G 99.4 4E-11 8.8E-16 131.4 26.1 235 23-295 23-277 (691)
127 KOG1036 Mitotic spindle checkp 99.4 2E-11 4.4E-16 122.4 21.0 217 25-277 54-293 (323)
128 KOG1524 WD40 repeat-containing 99.4 4.3E-10 9.2E-15 119.9 32.0 127 37-210 118-287 (737)
129 KOG2055 WD40 repeat protein [G 99.4 2.6E-11 5.5E-16 127.3 22.5 280 15-329 203-509 (514)
130 KOG0321 WD40 repeat-containing 99.4 6.9E-12 1.5E-16 136.2 18.6 226 36-294 65-348 (720)
131 KOG1539 WD repeat protein [Gen 99.4 3.5E-12 7.6E-17 142.3 16.7 190 26-250 449-647 (910)
132 KOG0302 Ribosome Assembly prot 99.4 4E-12 8.7E-17 130.1 15.4 148 35-208 270-436 (440)
133 KOG0302 Ribosome Assembly prot 99.4 1.3E-12 2.9E-17 133.6 11.9 150 36-211 225-379 (440)
134 KOG0641 WD40 repeat protein [G 99.4 3E-11 6.6E-16 115.4 18.9 186 37-251 154-349 (350)
135 KOG1524 WD40 repeat-containing 99.4 1E-11 2.2E-16 132.1 16.7 177 36-249 76-253 (737)
136 KOG0267 Microtubule severing p 99.4 6.7E-13 1.4E-17 145.7 7.1 186 22-241 66-256 (825)
137 KOG0270 WD40 repeat-containing 99.4 2.3E-11 5E-16 127.3 18.1 187 35-252 256-450 (463)
138 KOG2055 WD40 repeat protein [G 99.4 9.1E-12 2E-16 130.6 15.0 185 34-251 314-512 (514)
139 KOG4283 Transcription-coupled 99.4 1.2E-10 2.5E-15 115.8 21.3 195 26-251 44-276 (397)
140 KOG0641 WD40 repeat protein [G 99.4 1.6E-09 3.4E-14 103.9 28.2 273 27-330 34-347 (350)
141 KOG0267 Microtubule severing p 99.4 1.8E-12 3.9E-17 142.4 9.3 217 39-296 8-229 (825)
142 KOG4378 Nuclear protein COP1 [ 99.3 2.7E-11 5.9E-16 127.7 17.5 232 23-294 32-281 (673)
143 KOG2106 Uncharacterized conser 99.3 2.9E-10 6.3E-15 120.5 24.9 235 28-292 249-520 (626)
144 KOG0647 mRNA export protein (c 99.3 7E-11 1.5E-15 118.0 19.2 196 25-238 72-308 (347)
145 KOG1408 WD40 repeat protein [F 99.3 3.2E-10 7E-15 124.3 25.8 302 25-345 325-726 (1080)
146 KOG1407 WD40 repeat protein [F 99.3 4.2E-11 9.1E-16 117.3 17.1 255 58-350 14-280 (313)
147 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 5.8E-10 1.3E-14 119.5 26.8 220 36-297 43-283 (300)
148 KOG0300 WD40 repeat-containing 99.3 3.4E-11 7.4E-16 120.4 15.6 183 33-251 282-476 (481)
149 KOG4328 WD40 protein [Function 99.3 1.6E-10 3.5E-15 121.3 20.1 244 25-300 186-457 (498)
150 KOG0650 WD40 repeat nucleolar 99.3 8.1E-11 1.7E-15 127.0 18.2 201 58-294 394-638 (733)
151 KOG2114 Vacuolar assembly/sort 99.3 3.9E-08 8.5E-13 111.2 39.8 437 179-807 125-590 (933)
152 KOG1034 Transcriptional repres 99.3 4.3E-11 9.4E-16 120.7 14.6 225 36-292 106-382 (385)
153 KOG4378 Nuclear protein COP1 [ 99.3 8.1E-11 1.8E-15 124.2 16.9 200 26-255 80-284 (673)
154 KOG0321 WD40 repeat-containing 99.3 1.4E-10 3E-15 126.2 19.0 245 32-295 109-393 (720)
155 KOG2048 WD40 repeat protein [G 99.3 4.5E-10 9.7E-15 123.3 22.7 232 65-335 26-279 (691)
156 KOG0639 Transducin-like enhanc 99.3 2.3E-11 4.9E-16 128.4 11.0 178 36-250 522-703 (705)
157 PRK01742 tolB translocation pr 99.3 4.8E-10 1E-14 126.9 22.1 219 44-296 183-407 (429)
158 KOG0985 Vesicle coat protein c 99.2 8.6E-09 1.9E-13 117.3 31.3 390 326-814 1044-1464(1666)
159 KOG0639 Transducin-like enhanc 99.2 4.6E-10 1E-14 118.7 19.2 261 23-323 416-694 (705)
160 KOG1188 WD40 repeat protein [G 99.2 1.4E-10 3.1E-15 117.7 14.9 188 36-252 41-243 (376)
161 KOG0308 Conserved WD40 repeat- 99.2 1.8E-10 3.8E-15 125.7 15.0 191 35-251 85-285 (735)
162 KOG0771 Prolactin regulatory e 99.2 8.3E-11 1.8E-15 122.8 12.0 192 34-250 155-353 (398)
163 KOG2445 Nuclear pore complex c 99.2 9.1E-10 2E-14 110.4 17.5 200 36-251 74-318 (361)
164 KOG4283 Transcription-coupled 99.2 7.9E-10 1.7E-14 110.0 16.1 195 30-250 153-364 (397)
165 KOG0649 WD40 repeat protein [G 99.2 2.2E-09 4.8E-14 104.3 18.7 153 26-211 115-275 (325)
166 KOG2106 Uncharacterized conser 99.2 2.9E-09 6.3E-14 113.1 21.0 185 27-251 331-521 (626)
167 KOG1517 Guanine nucleotide bin 99.2 1.8E-09 4E-14 123.4 20.5 240 25-294 1109-1382(1387)
168 smart00299 CLH Clathrin heavy 99.2 8.5E-10 1.8E-14 104.4 15.3 128 392-525 6-134 (140)
169 KOG2919 Guanine nucleotide-bin 99.2 6.7E-10 1.4E-14 112.0 14.8 192 36-254 124-330 (406)
170 KOG1009 Chromatin assembly com 99.1 5.3E-09 1.1E-13 108.7 21.1 147 25-192 13-178 (434)
171 KOG1034 Transcriptional repres 99.1 3.5E-10 7.5E-15 114.3 12.1 209 25-250 135-382 (385)
172 KOG1240 Protein kinase contain 99.1 2.7E-09 5.8E-14 124.0 20.2 221 50-296 1034-1276(1431)
173 KOG0303 Actin-binding protein 99.1 2.8E-09 6.1E-14 110.2 17.0 189 34-251 43-249 (472)
174 KOG1445 Tumor-specific antigen 99.1 1E-09 2.2E-14 118.9 13.5 184 35-253 640-846 (1012)
175 KOG0642 Cell-cycle nuclear pro 99.1 1.7E-09 3.6E-14 116.7 14.8 241 28-299 297-567 (577)
176 KOG1587 Cytoplasmic dynein int 99.1 7.1E-09 1.5E-13 117.3 20.7 207 22-251 239-472 (555)
177 PF00637 Clathrin: Region in C 99.1 1.4E-11 3.1E-16 117.1 -1.2 131 389-525 3-134 (143)
178 KOG2079 Vacuolar assembly/sort 99.1 9.3E-08 2E-12 110.5 28.7 105 28-156 92-198 (1206)
179 KOG0290 Conserved WD40 repeat- 99.0 9.9E-09 2.1E-13 102.3 16.9 184 35-247 163-361 (364)
180 KOG2110 Uncharacterized conser 99.0 5.7E-08 1.2E-12 100.2 22.5 212 6-252 27-249 (391)
181 KOG1273 WD40 repeat protein [G 99.0 2.2E-08 4.8E-13 100.8 19.0 195 67-330 26-224 (405)
182 KOG1408 WD40 repeat protein [F 99.0 4.9E-09 1.1E-13 115.3 15.5 210 23-251 457-713 (1080)
183 KOG0303 Actin-binding protein 99.0 8E-09 1.7E-13 106.9 15.7 184 30-253 88-296 (472)
184 KOG1063 RNA polymerase II elon 99.0 6.2E-09 1.4E-13 114.6 15.7 166 22-210 521-699 (764)
185 KOG1538 Uncharacterized conser 99.0 8.9E-09 1.9E-13 112.4 16.4 219 66-327 14-289 (1081)
186 KOG2041 WD40 repeat protein [G 99.0 7.1E-06 1.5E-10 90.9 38.0 103 433-539 828-931 (1189)
187 PRK02889 tolB translocation pr 99.0 8.2E-08 1.8E-12 108.6 24.1 218 45-295 176-405 (427)
188 KOG4328 WD40 protein [Function 99.0 1.1E-08 2.4E-13 107.8 15.5 192 36-252 292-496 (498)
189 KOG0649 WD40 repeat protein [G 99.0 1.6E-07 3.4E-12 91.6 22.2 234 30-295 17-276 (325)
190 PRK11028 6-phosphogluconolacto 99.0 6.3E-07 1.4E-11 98.0 29.6 221 39-293 6-258 (330)
191 PRK05137 tolB translocation pr 99.0 2E-07 4.3E-12 105.9 26.5 220 46-296 183-415 (435)
192 KOG2066 Vacuolar assembly/sort 99.0 1.7E-07 3.6E-12 105.6 24.6 190 337-540 512-710 (846)
193 KOG1007 WD repeat protein TSSC 98.9 4E-08 8.6E-13 97.9 17.3 211 37-262 28-257 (370)
194 KOG2139 WD40 repeat protein [G 98.9 5.6E-08 1.2E-12 99.7 18.5 234 37-295 112-385 (445)
195 KOG3621 WD40 repeat-containing 98.9 1.1E-07 2.3E-12 105.8 22.0 291 28-353 38-375 (726)
196 PRK03629 tolB translocation pr 98.9 1.7E-07 3.7E-12 106.0 24.5 216 46-296 180-409 (429)
197 KOG1963 WD40 repeat protein [G 98.9 9.8E-08 2.1E-12 108.4 21.6 203 29-250 21-321 (792)
198 PF10366 Vps39_1: Vacuolar sor 98.9 5.9E-09 1.3E-13 92.5 9.3 94 430-530 2-108 (108)
199 KOG1063 RNA polymerase II elon 98.9 2.6E-07 5.7E-12 102.1 23.9 189 37-249 208-435 (764)
200 KOG2919 Guanine nucleotide-bin 98.9 6.9E-08 1.5E-12 97.7 17.8 227 35-294 61-328 (406)
201 KOG0322 G-protein beta subunit 98.9 3.8E-08 8.2E-13 97.0 15.3 249 27-292 16-322 (323)
202 KOG0290 Conserved WD40 repeat- 98.9 5.8E-08 1.3E-12 96.9 16.4 209 40-278 116-356 (364)
203 KOG0650 WD40 repeat nucleolar 98.9 2.1E-07 4.6E-12 101.1 22.0 238 28-290 403-677 (733)
204 PRK11028 6-phosphogluconolacto 98.9 5.4E-07 1.2E-11 98.5 26.1 233 27-293 36-304 (330)
205 KOG1523 Actin-related protein 98.9 6.1E-08 1.3E-12 98.1 15.6 200 25-252 10-237 (361)
206 KOG2111 Uncharacterized conser 98.9 1.9E-07 4.2E-12 94.6 19.2 214 7-253 28-258 (346)
207 KOG1272 WD40-repeat-containing 98.9 6.7E-09 1.4E-13 109.5 8.8 170 44-249 190-360 (545)
208 KOG2110 Uncharacterized conser 98.8 4.1E-08 9E-13 101.2 13.8 103 37-163 143-248 (391)
209 KOG0307 Vesicle coat complex C 98.8 9.5E-09 2.1E-13 119.5 9.9 207 65-302 65-293 (1049)
210 KOG1587 Cytoplasmic dynein int 98.8 7.6E-07 1.6E-11 101.1 25.0 226 43-296 220-475 (555)
211 PF04053 Coatomer_WDAD: Coatom 98.8 1.8E-06 4E-11 96.4 27.4 271 60-386 28-317 (443)
212 PRK04922 tolB translocation pr 98.8 2.7E-07 5.8E-12 104.7 21.3 217 45-296 184-414 (433)
213 KOG1963 WD40 repeat protein [G 98.8 8.3E-07 1.8E-11 101.1 24.2 267 28-329 208-535 (792)
214 PF08662 eIF2A: Eukaryotic tra 98.8 2.7E-07 5.9E-12 92.2 17.9 130 46-212 40-181 (194)
215 KOG2321 WD40 repeat protein [G 98.8 1.2E-07 2.5E-12 102.7 15.6 178 37-243 147-334 (703)
216 KOG0642 Cell-cycle nuclear pro 98.8 7.2E-08 1.6E-12 104.3 14.0 135 58-212 288-428 (577)
217 KOG1272 WD40-repeat-containing 98.8 1.8E-08 3.9E-13 106.3 8.9 145 35-211 263-409 (545)
218 PF08662 eIF2A: Eukaryotic tra 98.8 4E-07 8.6E-12 91.0 17.8 157 68-253 9-181 (194)
219 KOG1310 WD40 repeat protein [G 98.8 5.2E-07 1.1E-11 97.1 19.3 167 57-250 43-230 (758)
220 KOG1354 Serine/threonine prote 98.7 5.9E-07 1.3E-11 91.8 17.1 249 26-294 26-360 (433)
221 KOG0644 Uncharacterized conser 98.7 1.9E-08 4.2E-13 112.6 6.7 106 27-163 192-300 (1113)
222 KOG3881 Uncharacterized conser 98.7 6.7E-07 1.5E-11 93.0 17.4 196 28-255 108-324 (412)
223 KOG1007 WD repeat protein TSSC 98.7 2.7E-07 6E-12 92.1 13.8 159 62-250 121-288 (370)
224 COG2319 FOG: WD40 repeat [Gene 98.7 7.8E-06 1.7E-10 90.5 27.6 233 27-297 67-318 (466)
225 COG2319 FOG: WD40 repeat [Gene 98.7 4.7E-06 1E-10 92.3 25.6 223 38-296 126-362 (466)
226 KOG1009 Chromatin assembly com 98.7 1.1E-07 2.4E-12 99.0 11.2 155 65-239 14-181 (434)
227 KOG1445 Tumor-specific antigen 98.7 5E-07 1.1E-11 98.5 16.1 165 57-251 72-248 (1012)
228 KOG4227 WD40 repeat protein [G 98.7 2.8E-06 6.1E-11 87.9 20.6 231 28-292 59-321 (609)
229 TIGR02800 propeller_TolB tol-p 98.7 3.9E-06 8.4E-11 94.9 24.2 217 45-296 170-400 (417)
230 KOG2139 WD40 repeat protein [G 98.6 1.9E-06 4.1E-11 88.7 18.0 145 25-202 140-302 (445)
231 PF00780 CNH: CNH domain; Int 98.6 2.1E-05 4.6E-10 83.5 26.6 248 30-309 2-271 (275)
232 PRK00178 tolB translocation pr 98.6 6.7E-06 1.5E-10 93.4 23.8 216 46-296 180-409 (430)
233 KOG4227 WD40 repeat protein [G 98.6 1.3E-06 2.9E-11 90.2 15.6 166 59-252 51-226 (609)
234 PRK04792 tolB translocation pr 98.6 7.4E-06 1.6E-10 93.2 23.6 218 46-296 199-428 (448)
235 PRK01742 tolB translocation pr 98.6 2.9E-06 6.3E-11 96.2 20.2 173 35-249 215-399 (429)
236 KOG2111 Uncharacterized conser 98.6 2.9E-06 6.4E-11 86.2 16.8 114 25-162 136-255 (346)
237 PRK05137 tolB translocation pr 98.6 6.7E-06 1.4E-10 93.5 22.1 193 27-253 203-414 (435)
238 KOG0322 G-protein beta subunit 98.5 4.2E-07 9E-12 89.8 9.5 144 37-209 167-322 (323)
239 KOG1523 Actin-related protein 98.5 1.9E-06 4E-11 87.6 14.0 190 27-243 57-269 (361)
240 PRK04922 tolB translocation pr 98.5 9.3E-06 2E-10 92.2 21.5 185 35-253 215-413 (433)
241 KOG1240 Protein kinase contain 98.5 9E-06 1.9E-10 95.6 21.2 193 36-252 1062-1274(1431)
242 KOG1517 Guanine nucleotide bin 98.5 1.3E-06 2.8E-11 100.9 13.9 175 7-211 1189-1382(1387)
243 PRK03629 tolB translocation pr 98.5 1.2E-05 2.6E-10 91.0 22.1 185 36-254 211-409 (429)
244 PF00400 WD40: WD domain, G-be 98.4 4.6E-07 1E-11 64.7 5.9 39 54-101 1-39 (39)
245 PRK02889 tolB translocation pr 98.4 1.6E-05 3.5E-10 90.0 20.5 185 35-253 207-405 (427)
246 KOG1334 WD40 repeat protein [G 98.4 1.8E-06 4E-11 92.0 10.8 255 28-299 145-472 (559)
247 PF11768 DUF3312: Protein of u 98.4 0.0015 3.2E-08 72.8 33.4 71 131-212 260-331 (545)
248 KOG2394 WD40 protein DMR-N9 [G 98.4 9.1E-07 2E-11 95.3 7.9 132 26-189 220-384 (636)
249 KOG2315 Predicted translation 98.4 0.00014 3E-09 79.6 24.4 259 28-321 38-373 (566)
250 KOG1310 WD40 repeat protein [G 98.3 4.4E-06 9.6E-11 90.1 12.9 166 23-209 47-230 (758)
251 PF02239 Cytochrom_D1: Cytochr 98.3 7E-05 1.5E-09 82.5 22.5 180 39-251 10-202 (369)
252 KOG1275 PAB-dependent poly(A) 98.3 4.1E-06 8.8E-11 95.6 12.7 160 23-210 175-342 (1118)
253 PF05131 Pep3_Vps18: Pep3/Vps1 98.3 7.5E-06 1.6E-10 76.9 12.3 106 263-377 36-147 (147)
254 PRK01029 tolB translocation pr 98.3 0.00011 2.4E-09 83.0 24.0 221 45-296 165-406 (428)
255 KOG1188 WD40 repeat protein [G 98.3 3.1E-05 6.6E-10 79.6 16.9 172 97-296 52-245 (376)
256 KOG0644 Uncharacterized conser 98.3 3.8E-07 8.3E-12 102.5 3.5 118 57-210 183-300 (1113)
257 KOG2315 Predicted translation 98.3 0.00027 5.8E-09 77.4 24.6 229 43-297 144-394 (566)
258 KOG0974 WD-repeat protein WDR6 98.3 5.1E-06 1.1E-10 96.4 11.7 141 37-212 147-290 (967)
259 PF04762 IKI3: IKI3 family; I 98.2 0.014 2.9E-07 71.9 41.4 269 64-359 426-723 (928)
260 PF10282 Lactonase: Lactonase, 98.2 0.0014 3.1E-08 72.0 29.7 257 38-321 2-310 (345)
261 KOG3881 Uncharacterized conser 98.2 1.9E-05 4.2E-10 82.4 13.7 155 25-213 148-323 (412)
262 TIGR02800 propeller_TolB tol-p 98.2 0.00015 3.2E-09 82.0 22.4 185 35-253 201-399 (417)
263 COG2706 3-carboxymuconate cycl 98.2 0.0018 4E-08 67.7 27.3 255 38-321 5-309 (346)
264 KOG4547 WD40 repeat-containing 98.2 9.6E-05 2.1E-09 81.3 18.9 186 35-252 5-221 (541)
265 KOG4497 Uncharacterized conser 98.1 0.0016 3.4E-08 66.9 24.8 88 37-152 63-152 (447)
266 PF04053 Coatomer_WDAD: Coatom 98.1 0.00026 5.5E-09 79.4 21.1 204 35-302 44-262 (443)
267 PRK01029 tolB translocation pr 98.1 0.00022 4.7E-09 80.6 20.9 190 40-253 204-405 (428)
268 KOG2321 WD40 repeat protein [G 98.1 0.00037 7.9E-09 76.3 20.8 260 37-342 66-356 (703)
269 KOG3617 WD40 and TPR repeat-co 98.1 0.0078 1.7E-07 68.9 31.3 197 472-747 812-1014(1416)
270 KOG0974 WD-repeat protein WDR6 98.1 0.00011 2.4E-09 85.6 17.6 145 136-295 139-290 (967)
271 PRK00178 tolB translocation pr 98.0 0.00042 9.2E-09 78.7 21.8 185 35-253 210-408 (430)
272 KOG4547 WD40 repeat-containing 98.0 0.00027 5.9E-09 77.8 18.8 142 36-211 71-221 (541)
273 KOG2394 WD40 protein DMR-N9 [G 98.0 8.1E-06 1.8E-10 88.2 6.8 82 35-140 302-384 (636)
274 KOG0771 Prolactin regulatory e 98.0 8E-05 1.7E-09 78.7 13.5 143 134-294 148-312 (398)
275 COG2706 3-carboxymuconate cycl 98.0 0.0019 4E-08 67.7 23.2 197 28-253 92-323 (346)
276 PF02239 Cytochrom_D1: Cytochr 98.0 0.0014 3.1E-08 72.3 23.5 260 30-319 42-332 (369)
277 PRK04792 tolB translocation pr 98.0 0.0009 1.9E-08 76.2 22.3 186 35-254 229-428 (448)
278 PF10282 Lactonase: Lactonase, 97.9 0.0018 4E-08 71.1 23.8 192 35-251 98-322 (345)
279 PF08450 SGL: SMP-30/Gluconola 97.9 0.012 2.5E-07 61.3 27.8 200 35-268 11-232 (246)
280 PF04762 IKI3: IKI3 family; I 97.9 0.0048 1E-07 75.8 28.1 197 64-294 75-334 (928)
281 PLN02919 haloacid dehalogenase 97.9 0.005 1.1E-07 77.0 28.7 228 35-297 579-892 (1057)
282 KOG4532 WD40-like repeat conta 97.8 0.0011 2.3E-08 66.4 16.7 147 37-211 130-283 (344)
283 KOG4497 Uncharacterized conser 97.8 0.002 4.3E-08 66.2 18.6 243 24-279 90-423 (447)
284 PRK04043 tolB translocation pr 97.8 0.0067 1.5E-07 68.2 25.3 213 45-295 169-402 (419)
285 PLN03077 Protein ECB2; Provisi 97.8 0.15 3.3E-06 63.4 39.4 96 501-613 337-437 (857)
286 KOG4190 Uncharacterized conser 97.8 0.00017 3.7E-09 78.0 11.0 242 57-329 728-985 (1034)
287 COG5354 Uncharacterized protei 97.8 0.0036 7.7E-08 68.1 20.8 245 46-323 109-380 (561)
288 COG5170 CDC55 Serine/threonine 97.7 0.0002 4.3E-09 72.6 10.6 212 25-252 26-310 (460)
289 PLN03218 maturation of RBCL 1; 97.7 0.11 2.4E-06 64.9 36.8 256 334-613 374-662 (1060)
290 KOG1409 Uncharacterized conser 97.7 0.00056 1.2E-08 70.6 13.1 82 54-161 14-96 (404)
291 KOG0280 Uncharacterized conser 97.7 0.00028 6.1E-09 71.3 10.3 148 35-212 133-286 (339)
292 COG4946 Uncharacterized protei 97.7 0.022 4.8E-07 61.4 24.8 132 29-192 365-501 (668)
293 KOG4714 Nucleoporin [Nuclear s 97.7 0.00014 3E-09 72.3 8.0 120 25-161 179-316 (319)
294 PF04841 Vps16_N: Vps16, N-ter 97.7 0.12 2.5E-06 58.1 32.5 290 3-333 4-324 (410)
295 smart00036 CNH Domain found in 97.7 0.029 6.2E-07 60.3 26.6 260 36-320 14-300 (302)
296 PLN03218 maturation of RBCL 1; 97.6 0.028 6E-07 70.1 29.5 252 336-613 412-697 (1060)
297 KOG1064 RAVE (regulator of V-A 97.6 0.00034 7.4E-09 85.6 12.3 206 42-294 2187-2399(2439)
298 TIGR03300 assembly_YfgL outer 97.6 0.035 7.5E-07 61.8 27.8 125 195-328 243-376 (377)
299 KOG1064 RAVE (regulator of V-A 97.6 0.0003 6.4E-09 86.1 11.3 191 26-261 2209-2408(2439)
300 KOG1645 RING-finger-containing 97.6 0.0015 3.3E-08 68.9 15.1 88 47-162 175-265 (463)
301 KOG0882 Cyclophilin-related pe 97.6 0.001 2.2E-08 71.0 13.4 197 26-252 10-232 (558)
302 KOG2314 Translation initiation 97.5 0.005 1.1E-07 67.5 18.4 71 179-251 445-525 (698)
303 KOG1354 Serine/threonine prote 97.5 0.00096 2.1E-08 68.9 12.2 192 133-333 28-302 (433)
304 KOG1409 Uncharacterized conser 97.5 0.0033 7.1E-08 65.2 15.9 196 22-251 65-270 (404)
305 PF08553 VID27: VID27 cytoplas 97.5 0.0034 7.3E-08 74.2 18.1 136 42-209 501-646 (794)
306 KOG1832 HIV-1 Vpr-binding prot 97.5 9.2E-05 2E-09 84.3 4.9 156 26-220 1102-1264(1516)
307 PLN03077 Protein ECB2; Provisi 97.5 0.14 3.1E-06 63.6 33.0 81 461-545 390-482 (857)
308 PLN02919 haloacid dehalogenase 97.5 0.019 4.1E-07 72.0 24.9 186 35-253 635-890 (1057)
309 PLN03081 pentatricopeptide (PP 97.4 0.23 4.9E-06 60.3 33.4 254 332-613 89-373 (697)
310 TIGR03300 assembly_YfgL outer 97.4 0.11 2.4E-06 57.8 28.4 253 32-330 62-337 (377)
311 KOG3617 WD40 and TPR repeat-co 97.4 0.041 8.9E-07 63.3 23.7 67 28-103 62-131 (1416)
312 PLN03081 pentatricopeptide (PP 97.4 0.26 5.6E-06 59.8 33.1 177 333-513 126-316 (697)
313 TIGR02658 TTQ_MADH_Hv methylam 97.4 0.14 3E-06 55.7 27.2 229 31-298 53-335 (352)
314 KOG1334 WD40 repeat protein [G 97.3 0.0028 6.1E-08 68.4 13.3 166 57-251 135-312 (559)
315 KOG4190 Uncharacterized conser 97.3 0.00052 1.1E-08 74.4 7.5 115 34-162 746-905 (1034)
316 PRK04043 tolB translocation pr 97.3 0.033 7.1E-07 62.7 21.9 190 28-254 191-403 (419)
317 TIGR02917 PEP_TPR_lipo putativ 97.2 0.19 4.2E-06 62.2 30.4 172 336-513 505-695 (899)
318 TIGR02917 PEP_TPR_lipo putativ 97.2 0.62 1.3E-05 57.7 34.6 201 337-545 438-662 (899)
319 PF00400 WD40: WD domain, G-be 97.2 0.0012 2.6E-08 46.8 5.9 37 117-161 3-39 (39)
320 smart00320 WD40 WD40 repeats. 97.1 0.0011 2.4E-08 45.4 5.4 39 54-101 2-40 (40)
321 KOG0309 Conserved WD40 repeat- 97.1 0.0031 6.7E-08 71.1 11.1 145 36-211 82-233 (1081)
322 KOG1920 IkappaB kinase complex 97.1 0.16 3.5E-06 61.2 25.3 196 65-294 69-323 (1265)
323 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.64 1.4E-05 50.6 30.6 94 45-162 27-135 (352)
324 KOG2063 Vacuolar assembly/sort 97.1 0.016 3.4E-07 69.1 17.1 231 334-592 508-795 (877)
325 PF13838 Clathrin_H_link: Clat 97.1 0.0014 3.1E-08 51.6 5.8 57 363-419 5-66 (66)
326 COG5354 Uncharacterized protei 97.0 0.042 9.1E-07 60.0 17.6 186 41-254 198-398 (561)
327 COG4946 Uncharacterized protei 96.9 0.12 2.5E-06 56.1 19.5 142 35-212 332-479 (668)
328 KOG2041 WD40 repeat protein [G 96.8 0.0054 1.2E-07 68.9 9.9 163 65-251 15-186 (1189)
329 PF08450 SGL: SMP-30/Gluconola 96.8 0.3 6.6E-06 50.7 22.8 186 27-239 42-242 (246)
330 KOG3914 WD repeat protein WDR4 96.8 0.02 4.3E-07 60.8 13.4 159 65-251 63-223 (390)
331 PRK11138 outer membrane biogen 96.8 0.61 1.3E-05 52.3 26.5 253 32-329 117-392 (394)
332 KOG4714 Nucleoporin [Nuclear s 96.7 0.0053 1.1E-07 61.3 7.7 152 28-211 94-255 (319)
333 KOG4532 WD40-like repeat conta 96.7 0.073 1.6E-06 53.7 15.4 182 36-251 85-282 (344)
334 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.091 2E-06 46.4 14.3 93 36-158 16-109 (111)
335 PF11768 DUF3312: Protein of u 96.7 0.012 2.7E-07 65.6 11.0 73 62-163 257-329 (545)
336 KOG3616 Selective LIM binding 96.7 0.042 9.2E-07 62.2 15.1 186 332-530 676-881 (1636)
337 COG5170 CDC55 Serine/threonine 96.6 0.015 3.2E-07 59.5 10.0 121 132-257 28-207 (460)
338 KOG1912 WD40 repeat protein [G 96.6 0.022 4.8E-07 64.9 12.4 128 37-188 439-572 (1062)
339 PRK10049 pgaA outer membrane p 96.6 3.1 6.7E-05 51.0 32.6 153 329-487 14-177 (765)
340 PRK10747 putative protoheme IX 96.5 1.1 2.3E-05 50.3 25.5 232 343-613 97-341 (398)
341 PF15492 Nbas_N: Neuroblastoma 96.5 0.6 1.3E-05 48.0 20.6 150 69-241 2-166 (282)
342 KOG3914 WD repeat protein WDR4 96.4 0.015 3.2E-07 61.7 9.5 99 36-162 120-222 (390)
343 KOG2695 WD40 repeat protein [G 96.4 0.009 1.9E-07 62.0 7.7 106 35-163 264-376 (425)
344 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.16 3.4E-06 44.9 13.9 85 67-189 2-90 (111)
345 KOG2695 WD40 repeat protein [G 96.4 0.0055 1.2E-07 63.5 5.6 96 25-140 298-402 (425)
346 KOG0882 Cyclophilin-related pe 96.3 0.08 1.7E-06 57.0 13.9 137 9-161 80-229 (558)
347 KOG1912 WD40 repeat protein [G 96.2 0.14 3.1E-06 58.6 16.0 183 37-249 81-302 (1062)
348 KOG0280 Uncharacterized conser 96.0 0.024 5.2E-07 57.8 8.1 96 35-155 178-277 (339)
349 PRK15174 Vi polysaccharide exp 95.9 3.4 7.4E-05 49.6 27.0 257 330-613 42-331 (656)
350 KOG2395 Protein involved in va 95.8 0.18 3.8E-06 55.7 14.1 140 39-210 350-500 (644)
351 KOG1832 HIV-1 Vpr-binding prot 95.8 0.0059 1.3E-07 70.2 3.1 162 54-253 1091-1257(1516)
352 PF10366 Vps39_1: Vacuolar sor 95.8 0.037 8.1E-07 49.2 7.5 53 664-723 15-67 (108)
353 PRK11447 cellulose synthase su 95.8 9.6 0.00021 49.2 32.9 54 338-392 277-331 (1157)
354 PRK11788 tetratricopeptide rep 95.8 2.2 4.8E-05 47.4 23.7 249 340-612 45-327 (389)
355 COG0823 TolB Periplasmic compo 95.7 0.17 3.7E-06 56.8 14.3 166 45-240 173-342 (425)
356 PRK11447 cellulose synthase su 95.7 2.2 4.8E-05 55.0 26.1 249 338-613 359-650 (1157)
357 PF14761 HPS3_N: Hermansky-Pud 95.7 2 4.3E-05 42.8 19.7 168 27-210 20-214 (215)
358 KOG2079 Vacuolar assembly/sort 95.6 0.3 6.5E-06 58.4 16.0 64 133-203 133-197 (1206)
359 KOG1920 IkappaB kinase complex 95.5 0.25 5.4E-06 59.7 14.8 55 337-395 915-969 (1265)
360 KOG0309 Conserved WD40 repeat- 95.3 0.1 2.3E-06 59.3 10.5 190 29-251 30-232 (1081)
361 PF08596 Lgl_C: Lethal giant l 95.3 3.6 7.7E-05 45.8 22.6 185 132-330 88-334 (395)
362 PF10367 Vps39_2: Vacuolar sor 95.3 0.043 9.4E-07 49.0 6.3 44 771-816 4-48 (109)
363 PF07035 Mic1: Colon cancer-as 95.3 0.27 5.9E-06 47.2 11.8 100 409-513 10-115 (167)
364 KOG1840 Kinesin light chain [C 95.2 3.8 8.3E-05 46.8 22.9 55 336-390 205-267 (508)
365 KOG3621 WD40 repeat-containing 95.1 0.069 1.5E-06 60.8 8.4 132 133-276 38-186 (726)
366 KOG2314 Translation initiation 94.9 1 2.3E-05 50.1 16.4 100 133-241 448-555 (698)
367 KOG4640 Anaphase-promoting com 94.9 0.086 1.9E-06 59.3 8.3 93 65-189 21-115 (665)
368 PF04841 Vps16_N: Vps16, N-ter 94.7 3.7 8E-05 46.1 21.0 73 178-253 215-289 (410)
369 KOG2034 Vacuolar sorting prote 94.7 2.7 5.9E-05 49.8 19.8 227 493-792 365-603 (911)
370 PF13360 PQQ_2: PQQ-like domai 94.6 6 0.00013 40.3 24.1 215 43-300 1-237 (238)
371 PRK11138 outer membrane biogen 94.5 10 0.00022 42.4 26.6 254 33-330 67-352 (394)
372 PF07433 DUF1513: Protein of u 94.4 8 0.00017 41.0 24.2 244 36-332 18-286 (305)
373 PRK14720 transcript cleavage f 94.4 3.6 7.8E-05 50.1 20.8 99 334-445 35-134 (906)
374 KOG3785 Uncharacterized conser 94.3 2.9 6.2E-05 44.4 17.1 109 337-452 29-146 (557)
375 PRK11788 tetratricopeptide rep 94.3 2.3 5.1E-05 47.2 18.4 21 370-390 147-167 (389)
376 PF12894 Apc4_WD40: Anaphase-p 94.2 0.11 2.4E-06 38.4 4.9 30 131-163 12-41 (47)
377 PF15492 Nbas_N: Neuroblastoma 94.2 5.2 0.00011 41.3 18.4 162 29-211 49-260 (282)
378 KOG2076 RNA polymerase III tra 94.1 6 0.00013 47.1 21.1 41 571-613 420-462 (895)
379 PF04840 Vps16_C: Vps16, C-ter 93.8 9.6 0.00021 41.2 20.9 28 329-356 25-52 (319)
380 KOG4640 Anaphase-promoting com 93.8 0.21 4.6E-06 56.3 8.4 90 131-232 21-114 (665)
381 PF08553 VID27: VID27 cytoplas 93.8 0.13 2.9E-06 61.1 7.3 69 25-103 577-647 (794)
382 TIGR00990 3a0801s09 mitochondr 93.7 20 0.00043 42.8 30.6 59 337-398 134-193 (615)
383 COG3386 Gluconolactonase [Carb 93.6 9.7 0.00021 40.9 20.4 183 38-253 40-245 (307)
384 COG3490 Uncharacterized protei 93.6 9.1 0.0002 39.6 18.6 59 187-247 121-185 (366)
385 KOG2280 Vacuolar assembly/sort 93.4 20 0.00043 42.1 38.8 91 44-162 63-154 (829)
386 PF14781 BBS2_N: Ciliary BBSom 93.4 1.1 2.4E-05 41.1 10.7 113 138-255 6-129 (136)
387 TIGR00540 hemY_coli hemY prote 93.4 17 0.00036 41.0 24.1 107 342-450 96-210 (409)
388 PRK10049 pgaA outer membrane p 93.0 28 0.00062 42.7 27.2 136 470-613 247-406 (765)
389 PF15390 DUF4613: Domain of un 92.9 5.8 0.00012 45.1 17.4 140 133-276 59-218 (671)
390 PF00930 DPPIV_N: Dipeptidyl p 92.6 19 0.00041 39.6 24.3 52 42-104 20-72 (353)
391 KOG1008 Uncharacterized conser 92.5 0.046 1E-06 61.3 0.8 200 27-251 58-275 (783)
392 COG0823 TolB Periplasmic compo 92.4 2.3 4.9E-05 47.9 14.2 148 133-294 195-359 (425)
393 PF14870 PSII_BNR: Photosynthe 92.4 10 0.00022 40.5 18.2 187 29-248 108-301 (302)
394 PF00780 CNH: CNH domain; Int 92.4 3 6.5E-05 43.9 14.6 137 140-293 5-165 (275)
395 KOG3616 Selective LIM binding 92.3 2.1 4.7E-05 49.2 13.3 140 334-487 795-935 (1636)
396 smart00320 WD40 WD40 repeats. 92.0 0.41 9E-06 31.8 5.1 26 133-161 15-40 (40)
397 KOG1645 RING-finger-containing 91.5 0.87 1.9E-05 48.8 8.7 112 133-253 196-317 (463)
398 KOG2395 Protein involved in va 91.4 0.31 6.8E-06 53.9 5.5 57 25-81 430-488 (644)
399 KOG1275 PAB-dependent poly(A) 91.3 4.6 9.9E-05 48.0 14.9 182 34-251 146-342 (1118)
400 TIGR00990 3a0801s09 mitochondr 91.3 4.7 0.0001 48.1 16.1 201 338-544 339-568 (615)
401 KOG1897 Damage-specific DNA bi 91.2 42 0.00091 40.7 26.7 243 26-299 488-764 (1096)
402 PF12341 DUF3639: Protein of u 91.1 0.46 1E-05 30.4 3.9 26 26-51 2-27 (27)
403 PF12234 Rav1p_C: RAVE protein 90.8 5.2 0.00011 46.8 15.0 115 65-209 30-155 (631)
404 KOG2076 RNA polymerase III tra 90.7 45 0.00098 40.1 30.1 51 708-758 414-464 (895)
405 COG3386 Gluconolactonase [Carb 90.5 11 0.00025 40.3 16.4 146 31-202 117-276 (307)
406 PF08596 Lgl_C: Lethal giant l 90.4 2.5 5.4E-05 47.1 11.7 109 133-250 4-172 (395)
407 PF10647 Gmad1: Lipoprotein Lp 90.1 10 0.00023 39.4 15.6 177 45-253 2-199 (253)
408 PF03178 CPSF_A: CPSF A subuni 90.1 13 0.00028 40.2 16.9 154 25-205 88-260 (321)
409 KOG1840 Kinesin light chain [C 90.0 40 0.00088 38.7 21.0 29 363-391 198-226 (508)
410 PF13360 PQQ_2: PQQ-like domai 90.0 24 0.00052 35.8 23.8 171 148-331 39-230 (238)
411 PRK13616 lipoprotein LpqB; Pro 89.7 12 0.00025 44.2 17.0 177 43-253 327-529 (591)
412 PF06977 SdiA-regulated: SdiA- 89.5 27 0.00059 36.2 17.6 122 60-210 17-147 (248)
413 PF06977 SdiA-regulated: SdiA- 89.4 29 0.00063 35.9 22.5 198 25-242 21-240 (248)
414 PF03178 CPSF_A: CPSF A subuni 89.3 35 0.00077 36.8 23.3 62 148-213 45-118 (321)
415 PF13432 TPR_16: Tetratricopep 87.9 0.76 1.6E-05 36.4 4.1 54 337-391 4-58 (65)
416 PF12234 Rav1p_C: RAVE protein 87.8 12 0.00026 43.8 15.1 108 35-163 40-156 (631)
417 PRK15174 Vi polysaccharide exp 87.8 33 0.00071 41.3 19.6 52 338-390 118-170 (656)
418 PF07035 Mic1: Colon cancer-as 87.0 15 0.00032 35.5 12.8 65 664-735 46-116 (167)
419 PF13429 TPR_15: Tetratricopep 87.0 3.2 6.8E-05 43.9 9.4 48 493-540 220-270 (280)
420 TIGR00540 hemY_coli hemY prote 86.8 18 0.0004 40.6 15.9 202 336-543 159-395 (409)
421 PF15390 DUF4613: Domain of un 86.7 34 0.00075 39.2 17.0 127 66-212 58-188 (671)
422 KOG4649 PQQ (pyrrolo-quinoline 86.2 43 0.00094 34.4 25.5 71 25-104 52-124 (354)
423 TIGR02521 type_IV_pilW type IV 86.1 25 0.00054 34.8 15.3 55 337-392 38-93 (234)
424 PF14727 PHTB1_N: PTHB1 N-term 86.0 65 0.0014 36.2 28.2 119 36-163 38-163 (418)
425 PF05694 SBP56: 56kDa selenium 85.8 48 0.001 36.9 17.4 160 39-215 147-347 (461)
426 COG5422 ROM1 RhoGEF, Guanine n 84.7 25 0.00053 42.0 15.1 119 179-308 1008-1140(1175)
427 KOG2002 TPR-containing nuclear 84.4 27 0.00059 42.2 15.6 87 335-421 275-370 (1018)
428 PF12894 Apc4_WD40: Anaphase-p 84.3 2.5 5.3E-05 31.3 4.8 30 65-103 12-41 (47)
429 PF04840 Vps16_C: Vps16, C-ter 84.2 66 0.0014 34.7 28.5 105 334-454 4-108 (319)
430 PRK13616 lipoprotein LpqB; Pro 84.0 83 0.0018 37.2 19.8 136 46-211 380-528 (591)
431 PF07569 Hira: TUP1-like enhan 83.5 7 0.00015 39.7 9.5 61 22-84 9-86 (219)
432 COG5167 VID27 Protein involved 83.4 21 0.00044 40.0 13.1 140 39-212 484-634 (776)
433 PF08728 CRT10: CRT10; InterP 83.4 55 0.0012 39.0 17.6 162 25-209 40-245 (717)
434 KOG2377 Uncharacterized conser 83.3 80 0.0017 35.1 30.3 143 29-200 26-173 (657)
435 PF13371 TPR_9: Tetratricopept 83.1 1.5 3.2E-05 35.5 3.6 53 338-391 3-56 (73)
436 KOG1070 rRNA processing protei 82.8 1.4E+02 0.003 38.1 20.9 80 721-822 1613-1700(1710)
437 TIGR02521 type_IV_pilW type IV 82.7 18 0.0004 35.8 12.4 55 337-392 72-127 (234)
438 PF14559 TPR_19: Tetratricopep 82.2 0.7 1.5E-05 36.9 1.3 51 340-391 1-52 (68)
439 PF13429 TPR_15: Tetratricopep 82.1 4.4 9.6E-05 42.8 7.8 56 336-391 116-173 (280)
440 PF11715 Nup160: Nucleoporin N 81.8 6.3 0.00014 46.3 9.7 63 34-105 157-250 (547)
441 PLN00033 photosystem II stabil 81.5 95 0.0021 34.7 20.2 104 132-245 282-393 (398)
442 KOG2377 Uncharacterized conser 81.1 19 0.00041 39.7 11.7 97 133-238 69-168 (657)
443 KOG4340 Uncharacterized conser 80.9 8.4 0.00018 40.1 8.7 92 325-418 5-97 (459)
444 KOG2003 TPR repeat-containing 80.8 97 0.0021 34.3 17.4 138 371-512 497-651 (840)
445 PRK02888 nitrous-oxide reducta 80.7 36 0.00078 39.8 14.6 71 179-251 320-404 (635)
446 KOG1898 Splicing factor 3b, su 80.3 34 0.00074 41.8 14.4 113 25-160 539-668 (1205)
447 PF12895 Apc3: Anaphase-promot 80.3 2.2 4.7E-05 35.8 3.7 18 370-387 31-48 (84)
448 PRK13684 Ycf48-like protein; P 80.2 95 0.0021 33.8 18.9 183 32-249 139-329 (334)
449 PF07569 Hira: TUP1-like enhan 79.6 11 0.00024 38.3 9.2 68 257-329 9-93 (219)
450 PRK10866 outer membrane biogen 79.5 58 0.0013 33.7 14.8 57 335-391 37-96 (243)
451 KOG3630 Nuclear pore complex, 79.4 13 0.00029 45.4 10.8 161 58-241 93-261 (1405)
452 PF02897 Peptidase_S9_N: Proly 79.3 1.1E+02 0.0024 34.2 27.3 199 66-296 125-361 (414)
453 PF09976 TPR_21: Tetratricopep 79.3 4.2 9.1E-05 38.2 5.8 19 369-387 90-108 (145)
454 PF14763 HPS3_C: Hermansky-Pud 79.2 13 0.00029 38.9 9.5 98 703-808 245-350 (353)
455 KOG1126 DNA-binding cell divis 78.5 79 0.0017 36.8 16.2 76 462-543 436-513 (638)
456 PF06433 Me-amine-dh_H: Methyl 78.5 1E+02 0.0023 33.3 19.0 65 148-213 150-216 (342)
457 TIGR02604 Piru_Ver_Nterm putat 78.4 28 0.0006 38.5 12.8 100 133-241 16-141 (367)
458 PRK09782 bacteriophage N4 rece 78.3 19 0.0004 45.3 12.4 162 343-515 57-275 (987)
459 PF12569 NARP1: NMDA receptor- 78.3 1.4E+02 0.003 34.6 22.9 55 336-393 10-67 (517)
460 PRK10747 putative protoheme IX 77.8 1.2E+02 0.0027 33.8 18.4 87 341-428 129-222 (398)
461 PF13525 YfiO: Outer membrane 77.8 25 0.00054 35.2 11.2 147 336-512 11-166 (203)
462 KOG2444 WD40 repeat protein [G 77.5 4.9 0.00011 40.3 5.6 73 23-104 99-178 (238)
463 KOG1916 Nuclear protein, conta 76.8 1.7 3.6E-05 51.3 2.6 60 36-104 196-266 (1283)
464 COG5167 VID27 Protein involved 76.6 3.4 7.4E-05 45.8 4.7 65 28-103 565-632 (776)
465 PF08728 CRT10: CRT10; InterP 75.2 1.1E+02 0.0024 36.6 16.8 114 133-250 103-245 (717)
466 PF14655 RAB3GAP2_N: Rab3 GTPa 74.5 32 0.00069 38.5 11.7 59 140-208 77-144 (415)
467 COG3204 Uncharacterized protei 72.4 1.3E+02 0.0029 31.6 17.6 136 47-210 65-210 (316)
468 KOG2444 WD40 repeat protein [G 71.7 14 0.00031 37.1 7.2 62 34-104 69-133 (238)
469 KOG2376 Signal recognition par 71.3 69 0.0015 36.8 13.2 168 339-511 184-400 (652)
470 PF14870 PSII_BNR: Photosynthe 71.1 1.5E+02 0.0033 31.7 18.9 110 132-251 146-260 (302)
471 PRK02888 nitrous-oxide reducta 70.8 36 0.00079 39.8 11.3 101 44-163 295-404 (635)
472 COG5290 IkappaB kinase complex 70.6 2.4E+02 0.0052 33.8 17.6 25 335-359 668-692 (1243)
473 COG2956 Predicted N-acetylgluc 69.2 1.7E+02 0.0036 31.4 14.5 120 333-453 144-275 (389)
474 COG3063 PilF Tfp pilus assembl 69.2 33 0.00072 34.7 9.1 41 344-391 90-130 (250)
475 PRK09782 bacteriophage N4 rece 69.2 1.6E+02 0.0034 37.3 17.2 48 342-391 521-569 (987)
476 KOG0686 COP9 signalosome, subu 69.1 91 0.002 34.3 13.0 73 345-418 132-212 (466)
477 PF07719 TPR_2: Tetratricopept 68.6 6.7 0.00014 26.0 3.1 27 365-391 2-28 (34)
478 PF13424 TPR_12: Tetratricopep 68.4 9 0.00019 31.3 4.5 54 338-391 13-73 (78)
479 PF07433 DUF1513: Protein of u 68.2 1.7E+02 0.0037 31.2 20.6 41 42-82 74-116 (305)
480 PF10647 Gmad1: Lipoprotein Lp 68.1 1.6E+02 0.0034 30.6 18.6 128 43-200 46-184 (253)
481 PLN00033 photosystem II stabil 67.9 2.1E+02 0.0045 32.0 16.8 109 65-204 281-392 (398)
482 KOG4499 Ca2+-binding protein R 67.2 1.4E+02 0.003 30.4 12.9 111 68-202 161-275 (310)
483 KOG3522 Predicted guanine nucl 66.9 30 0.00065 41.2 9.6 145 36-211 548-698 (925)
484 PRK14574 hmsH outer membrane p 66.6 65 0.0014 39.7 13.0 150 335-488 73-231 (822)
485 PRK11189 lipoprotein NlpI; Pro 66.6 77 0.0017 33.8 12.5 56 339-396 73-129 (296)
486 COG5110 RPN1 26S proteasome re 66.0 1.4E+02 0.003 34.1 13.8 49 700-755 246-294 (881)
487 PF06433 Me-amine-dh_H: Methyl 65.5 57 0.0012 35.2 10.7 122 202-329 17-163 (342)
488 PF04097 Nic96: Nup93/Nic96; 65.5 38 0.00083 40.3 10.6 107 488-613 260-376 (613)
489 PF10168 Nup88: Nuclear pore c 65.2 1.3E+02 0.0029 36.4 14.9 110 39-161 36-177 (717)
490 PF13934 ELYS: Nuclear pore co 63.9 1.7E+02 0.0036 29.9 13.6 39 348-389 65-103 (226)
491 TIGR02795 tol_pal_ybgF tol-pal 63.7 57 0.0012 28.5 9.3 58 334-391 6-66 (119)
492 KOG3522 Predicted guanine nucl 63.5 13 0.00029 43.9 6.0 112 133-254 584-700 (925)
493 KOG2003 TPR repeat-containing 63.0 75 0.0016 35.1 11.0 49 342-390 249-302 (840)
494 KOG1008 Uncharacterized conser 62.8 2.4 5.2E-05 48.2 -0.0 113 28-163 159-275 (783)
495 KOG2280 Vacuolar assembly/sort 62.7 3.3E+02 0.0072 32.5 33.7 47 331-377 438-484 (829)
496 smart00564 PQQ beta-propeller 61.7 15 0.00033 24.2 3.9 26 33-58 4-30 (33)
497 PHA02713 hypothetical protein; 59.7 2E+02 0.0044 33.8 15.2 26 75-104 351-376 (557)
498 PRK10803 tol-pal system protei 59.2 22 0.00047 37.3 6.3 54 337-390 150-206 (263)
499 COG3391 Uncharacterized conser 59.2 2.9E+02 0.0062 30.7 25.5 192 67-297 76-287 (381)
500 PF10214 Rrn6: RNA polymerase 59.1 4.2E+02 0.0091 32.6 20.8 76 133-213 148-235 (765)
No 1
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-117 Score=970.34 Aligned_cols=790 Identities=46% Similarity=0.709 Sum_probs=669.3
Q ss_pred CCCceeecccccccCCCCCCCCcCCCCeEEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEeecccc-eeEEEEecCCCEE
Q 037368 1 MYQWRKFDFFEEKYGGKSTIPEEVSGNITCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSS-VLFLQQLKQRNFL 79 (823)
Q Consensus 1 ~~~w~~f~ff~~~~~~~~~~~~~~~~~is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~-V~~i~~~~~~~~l 79 (823)
|.+||||+|||+..+.++ +-+.++.|+|+.++.+.+|+||.+|.|.++++..+.++.|++|..+ |+.+....+.++|
T Consensus 3 l~qWrrF~lFq~~~i~~~--~~~~G~~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L 80 (933)
T KOG2114|consen 3 LKQWRRFSLFQWKEIPSL--ENFVGNAISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFL 80 (933)
T ss_pred hhhcceeeeeeeeecCCc--ccCCCCceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEE
Confidence 579999999999998753 2233458999999999999999999999999999998999999877 8888887777899
Q ss_pred EEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCC--CCceEEEEEecCCCCcceEEEEEeCCeE
Q 037368 80 VTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFP--EAKITSFLVLEEAPPILLIAIGLDNGCI 157 (823)
Q Consensus 80 ~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~v~~va~~~d~~~~~~ia~G~~dG~V 157 (823)
+|+|+|++|.|++ ||||++++.++ +.+|+|+++.+++...+| ...++++++|.+.+. +|+|+.||.|
T Consensus 81 ~sv~Ed~~~np~l----lkiw~lek~~~----n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~---Iv~Gf~nG~V 149 (933)
T KOG2114|consen 81 FSVGEDEQGNPVL----LKIWDLEKVDK----NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT---IVCGFTNGLV 149 (933)
T ss_pred EEEeecCCCCceE----EEEecccccCC----CCCcceeeeeeeeccCCCCCCCcceEEEEEccccE---EEEEecCcEE
Confidence 9999999873336 99999998652 334999977777643333 133999999999777 9999999999
Q ss_pred EEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccC-CCe
Q 037368 158 YCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD-RLE 236 (823)
Q Consensus 158 ~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~-~~~ 236 (823)
.+++||++|+|+.|.+..+.+++|||||+|..+++ ..+|++|..+|.+|.+.+++....+++++|..++|+++++ .++
T Consensus 150 ~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~-s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 150 ICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK-SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred EEEcCcchhccccceeeeccCCCCceeeEEecCCc-eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc
Confidence 99999999999999888888899999999999996 3599999999999999987744556899999999999997 456
Q ss_pred EEEeeCCeEEEEecCCCCcccccc-CCeEEEEeeC-cEEEEEEecCC---------CCccEEEEEeCCCCEEEEeccccc
Q 037368 237 LIIGRPEAVYFYEVDGRGPCWAFE-GEKKLLGWFR-GYLLCVIADQR---------NSKNIFNVYDLKNRLIAHSLVVKE 305 (823)
Q Consensus 237 liv~~~~~I~i~~~~g~~~~~~~~-g~~~~i~~~~-~ylv~~s~d~~---------~~~~~I~I~D~~~~~i~~~~~i~~ 305 (823)
|++++++.+++|+++|+++|++|+ |++..+.|++ .|+++++++.. +....+.++|+.++.++++..+.+
T Consensus 229 fIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n~~v~ys~vl~~ 308 (933)
T KOG2114|consen 229 FICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRNRYVLYSSVLED 308 (933)
T ss_pred EEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCCCCCcccCccchhheeehhhhcCcccchHHhHHH
Confidence 999999999999999999999999 9988888877 88888876532 124567888999999999988888
Q ss_pred eeEEEeecC-cEEEEEcCCeEEEEeecChHHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHH
Q 037368 306 VSHMLCEWG-NIILVMTDKSVLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAM 384 (823)
Q Consensus 306 v~~v~~~~~-~~~vvs~~~~v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~ 384 (823)
+..++..|+ .+|+++++|.+.+|.|++++.++++|++|++|+.|+.||+..+++++.+.+|+++||||||.||+|++|+
T Consensus 309 l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~ 388 (933)
T KOG2114|consen 309 LSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEAT 388 (933)
T ss_pred HHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 777788899 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcChHHHHHHhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHH
Q 037368 385 SQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVE 464 (823)
Q Consensus 385 ~~y~~ti~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~ 464 (823)
++||+|||.+|||+||.||+|+++|++|+.||++||++++|+++|+++||+||+|++|.++|.+||+..+ .|++.||++
T Consensus 389 ~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e 467 (933)
T KOG2114|consen 389 DQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVE 467 (933)
T ss_pred HHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 577789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037368 465 TAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDILLRL 544 (823)
Q Consensus 465 ~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~ll~~~ 544 (823)
+|+++||+++++++|.+||.+++.|++|+++++++.++|++|++|+++++++++.+.+.+||++||.+.|++|+++|++.
T Consensus 468 ~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~ 547 (933)
T KOG2114|consen 468 TALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIEL 547 (933)
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccCCCCCcccCCCCCHHHHHhhhccCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCcccccC
Q 037368 545 CTEDGESTKRGASSSTYMSMLPSPVDFLNIFVHHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSISQLN 624 (823)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~~~~ 624 (823)
|++..++... ......+++.+++.+|..+|+.+..||+++.+..+++++...+..++.++++.... ....+
T Consensus 548 ~t~~~~~~~~-----~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e~~~i~~t~~~~~l~~~s-f~~~~--- 618 (933)
T KOG2114|consen 548 ITELNSQGKG-----KSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEEVLEIIYTLLELSLMQKS-FVTKP--- 618 (933)
T ss_pred HhhcCCCCCC-----chhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchhhhccccchhhhhhhhcc-ccccc---
Confidence 9986543221 11234557889999999999999999999888877766556788889999886510 11000
Q ss_pred cccccccccCCCCCC-cccCCccccCCCCC--CC-----CcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcC
Q 037368 625 DGVDLRLRSGSGLPK-AEYNGEVTADGKDT--YK-----GKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNA 696 (823)
Q Consensus 625 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~--~~-----~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~ 696 (823)
-+.+. . ++... .++.| -.+|+..+ .. +-..++..++-.-+++.++..+.....||.+.||.+|++.+
T Consensus 619 --~~~n~-~-~~l~h~~~~~~-~~sdpq~kt~~~~~l~~~~~~~~~~~~~~~l~ksn~l~d~~~~nvd~d~al~l~qm~d 693 (933)
T KOG2114|consen 619 --FEFNL-E-AELAHYQQYEG-FDSDPQVKTTTLYDLYLELDAEDVPERTIILRKSNKLLDYAASNVDEDAALLLSQMSD 693 (933)
T ss_pred --hhhcc-H-HHHHHHHhhcc-cccChhhhhccchhhHHHHHhhhcccccchhhhhcchhhhhhccccchHHHHHHHHhC
Confidence 00000 0 00000 00000 00110000 00 00000111111222222212222345699999999999999
Q ss_pred CchhHHHHHHHhccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCC--CCCHHHHHHHHHHHHhC
Q 037368 697 FKEGLLYLYEKLKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELG--EDCSKEVKEVLTYIERD 774 (823)
Q Consensus 697 ~~~~~v~L~~k~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~--~~~~~~i~~~L~~i~~~ 774 (823)
|.+|..|+|++++.+.+.+.+++...|+++++..|+.+|.. +|+||..+|+||++.. +++.+.+.+||+.|+..
T Consensus 694 f~dg~ly~~~k~k~~~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~ 769 (933)
T KOG2114|consen 694 FTDGLLYSYEKLKEGQDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQ 769 (933)
T ss_pred CCchHHHHHhhccchHHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987 9999999999999988 55667889999999999
Q ss_pred CCCChHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 037368 775 DILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEGDRRAIENYQ 823 (823)
Q Consensus 775 ~~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l~~~~~~i~~~~~~i~~~~ 823 (823)
++|||+.||++|+||.+++++.|||||+++|++++++|++++++|+.|+
T Consensus 770 ~~ippl~VL~~Lakn~~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~yk 818 (933)
T KOG2114|consen 770 ERIPPLHVLQILAKNGTLTLSVIKDYIIKWLNKYSTIIEQDEDAIEVYK 818 (933)
T ss_pred ccCCHHHHHHHHhcCCceEEehhHHHHHHHHHhhhHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984
No 2
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-61 Score=525.06 Aligned_cols=651 Identities=20% Similarity=0.249 Sum_probs=494.0
Q ss_pred CcCCCCeEEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 22 EEVSGNITCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 22 ~~~~~~is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
++..+.|+|++.++.++++||++|.|++++..|++ ++...|+.+ +.+|.+++|||+||+ |.|-.
T Consensus 36 ~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk---------v~I~s 99 (846)
T KOG2066|consen 36 FLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK---------VVIGS 99 (846)
T ss_pred HHhhhHHHHHHhhcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc---------EEEee
Confidence 34456689999999999999999999999988887 566677765 668999999999998 99988
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC--CcceEEEEEeCCeEEEEEcccccccccceeE-EecC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP--PILLIAIGLDNGCIYCIKGDIARERITRFKL-QVDN 178 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~--~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~~~ 178 (823)
+.+.+ ...++ +.+.| +.+||++||.. ..+.+++|+..| ++++...+ .+.|..+ +.+.
T Consensus 100 l~~~~----------~~~~~---df~rp---iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~w---lgnk~~v~l~~~ 159 (846)
T KOG2066|consen 100 LFTDD----------EITQY---DFKRP---IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNW---LGNKDSVVLSEG 159 (846)
T ss_pred ccCCc----------cceeE---ecCCc---ceeEEeccchhhhhhhheeecCcce-EEEehhhh---hcCccceeeecC
Confidence 87533 11122 22567 99999999943 222288898888 88885433 2333333 5678
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC-----CccceecccCCCeEEEeeCCeEEEEecCCC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG-----CSTNSVAMSDRLELIIGRPEAVYFYEVDGR 253 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~-----~~~~~~~~s~~~~liv~~~~~I~i~~~~g~ 253 (823)
+|||.++.|.. +.++|+++.||++||+..+.....+-..++ ..+..++|.++.++++||+++|+++.++.+
T Consensus 160 eG~I~~i~W~g----~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 160 EGPIHSIKWRG----NLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred ccceEEEEecC----cEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEecc
Confidence 99999999875 589999999999999976542211111111 112347899999999999999999998732
Q ss_pred Ccc--ccccC----------------CeEEEEeeCcEEEEEEecCC----------------CCccEEEEEeCCCCEEEE
Q 037368 254 GPC--WAFEG----------------EKKLLGWFRGYLLCVIADQR----------------NSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 254 ~~~--~~~~g----------------~~~~i~~~~~ylv~~s~d~~----------------~~~~~I~I~D~~~~~i~~ 299 (823)
... -.+.+ -.+++++++..|++...+.. +..+.|++.+..+..+.-
T Consensus 236 ~s~~a~~~~~~~~~~V~~~s~f~~s~~isGla~lg~qLv~L~f~~~~~~~e~~s~~~~~r~~~~~peir~~~~~~~Ei~~ 315 (846)
T KOG2066|consen 236 SSSEARSFRLPSLKKVEIVSHFETSFYISGLAPLGDQLVVLGFDKDISEGEFTSARPSSRAKGNRPEIRIVSLNNDEICS 315 (846)
T ss_pred cccccccccCCccceeeeEEEeeeeeeeeccccccceeEEEeeecccccccccccchhhhccCCCceEEeccccchhhhh
Confidence 110 01111 13457778888888764421 246789999887755432
Q ss_pred eccc----cc--eeE--E--EeecCcEEEEEcCCeEEEEeecChHHHHHHHHHhccHHHHHHHHHhcC--CCHHHHHHHH
Q 037368 300 SLVV----KE--VSH--M--LCEWGNIILVMTDKSVLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQ--ADAAATAEVL 367 (823)
Q Consensus 300 ~~~i----~~--v~~--v--~~~~~~~~vvs~~~~v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~--~~~~~~~~I~ 367 (823)
..-+ .. +.. + .......|.+-++++++..+|++.+|+++||+++++|++|+++|+... .+...+..++
T Consensus 316 Dal~~~~~e~~~~~DY~L~~~~~~~~~yyIvspkDiV~a~~~~~~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~ 395 (846)
T KOG2066|consen 316 DALIVRGFEELSINDYHLGGHPKTEPLYYIVSPKDIVVAKERDQEDHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVG 395 (846)
T ss_pred hhhhhcchhhcCCccccccCCCCCCceEEEecCCceEEEeecCcchhHHHHHHhhHHHHHHHHHHhccCCccccchHHHH
Confidence 2110 00 111 1 112334444445688999999999999999999999999999999853 3444589999
Q ss_pred HHHhhhhccCCCHHHHHHHHHHHhCCc--ChHHHHHHhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhh
Q 037368 368 RKYGDHLYSKQDYDEAMSQYILTIGHL--EPSYVIQKFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEK 445 (823)
Q Consensus 368 ~~y~d~L~~k~~y~~A~~~y~~ti~~~--eps~vI~kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~ 445 (823)
+.|.|||+.+|+|++|+..+.+..|.. +|+.++++|...+++..+..|||+-.. .+....+..+|..++. .+...
T Consensus 396 ~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~-rL~p~vYemvLve~L~--~~~~~ 472 (846)
T KOG2066|consen 396 KTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPP-RLKPLVYEMVLVEFLA--SDVKG 472 (846)
T ss_pred HHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCc-ccCchHHHHHHHHHHH--HHHHH
Confidence 999999999999999999999887754 599999999999999999999998443 2333444455554444 67889
Q ss_pred HHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHH
Q 037368 446 LNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEY 525 (823)
Q Consensus 446 l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~ 525 (823)
|.++++.|+ +. .|+..+.++....+-... .+.+.-.+.|..|.-..++|.+|++.+.++...+++++|.+|
T Consensus 473 F~e~i~~Wp--~~-Lys~l~iisa~~~q~~q~------Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~ 543 (846)
T KOG2066|consen 473 FLELIKEWP--GH-LYSVLTIISATEPQIKQN------SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKH 543 (846)
T ss_pred HHHHHHhCC--hh-hhhhhHHHhhcchHHHhh------ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHH
Confidence 999999998 43 677777776544211000 001111122444443449999999999999999999999998
Q ss_pred H---------HHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHHHhhhccCcHHHHHHHHHHHhhcCCC
Q 037368 526 G---------KILIEHKPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVHHPESLMDFLEKYTNKVKDS 596 (823)
Q Consensus 526 ~---------~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~yLe~~i~~~~~~ 596 (823)
. ..||..+.+.+++++++. .+..+|..+++.+.+.|+++..||..+..++.+.
T Consensus 544 nL~d~i~~~Iv~Lmll~skka~~lLldn------------------~d~ip~a~Vveql~~~P~~l~~YL~kl~~rd~~~ 605 (846)
T KOG2066|consen 544 NLFDQIKDQIVLLMLLDSKKAIDLLLDN------------------RDSISPSEVVEQLEDNPKLLYCYLHKLFKRDHFM 605 (846)
T ss_pred hhHHHHHHHHHHHHccchhhHHHHHhhc------------------cccCCHHHHHHHHhcChHHHHHHHHHHhhcCccc
Confidence 6 234444455555555543 2567899999999999999999999999887633
Q ss_pred CchhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcccCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCC
Q 037368 597 PAQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAEYNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPS 676 (823)
Q Consensus 597 ~~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~ 676 (823)
...+|+.++++|+++ .|++|++||++
T Consensus 606 --~~~y~dk~I~LYAEy------------------------------------------------Drk~LLPFLr~---- 631 (846)
T KOG2066|consen 606 --GSEYHDKQIELYAEY------------------------------------------------DRKKLLPFLRK---- 631 (846)
T ss_pred --cchhhhHHHHHHHHH------------------------------------------------hHhhhhHHHHh----
Confidence 579999999999998 36999999999
Q ss_pred CCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHh-cCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhcc
Q 037368 677 ELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQ-AHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGE 755 (823)
Q Consensus 677 ~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~-~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~ 755 (823)
+.+|++++|+.+|.+.||.+|.|||+||||++.+||.++++ .+|+++||+||++++ |++||..+++|+++
T Consensus 632 ---s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~------D~eLWe~LI~~~ld 702 (846)
T KOG2066|consen 632 ---SQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQD------DSELWEDLINYSLD 702 (846)
T ss_pred ---cCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcC------CHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999 599999999999998 67999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCChHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 037368 756 LGEDCSKEVKEVLTYIERDDILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEG 814 (823)
Q Consensus 756 ~~~~~~~~i~~~L~~i~~~~~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l~~~~~~i~~ 814 (823)
.|+ .++.+|+ |..+ ++|+.|+..+| +...|-++|+-|.+.|+.++-+++=
T Consensus 703 kPe----~~~~ll~-i~~~--~dpl~ii~kip--~g~~IPnLrdsl~Kil~dy~~q~el 752 (846)
T KOG2066|consen 703 KPE----FIKALLN-IGEH--EDPLLIIRKIP--DGLEIPNLRDSLVKILQDYNLQLEL 752 (846)
T ss_pred CcH----HHHHHHH-hhhc--ccHHHHHhcCC--CCCCCccHHHHHHHHHHhhhhhHHH
Confidence 986 4777777 5553 99999999998 7778999999999999999877653
No 3
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-39 Score=371.61 Aligned_cols=678 Identities=18% Similarity=0.235 Sum_probs=466.6
Q ss_pred cCCCCeE-EEeeCCCEEEEEecCCeEEEEc-CCC---eee------EeEee--cccceeEEEEecCCCEEEEEecCCCCc
Q 037368 23 EVSGNIT-CCSSGRGKVVIGCDDGAVSLLD-RGL---KFN------FGFQA--HSSSVLFLQQLKQRNFLVTVGEDEQVS 89 (823)
Q Consensus 23 ~~~~~is-~~~~~~~~l~~gs~dG~i~~~d-~~~---~~~------~~~~~--H~~~V~~i~~~~~~~~l~s~s~D~~~~ 89 (823)
..+..|+ |++..++.+++||.+|.+.+|. .+. ... ..|.. +..+|+.|...+.-+++...++.+
T Consensus 13 ~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsq--- 89 (877)
T KOG2063|consen 13 RLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQ--- 89 (877)
T ss_pred hcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCc---
Confidence 3456677 9999999999999999999998 221 111 11222 257899998888878887776655
Q ss_pred ccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcc--e-EEEEE-eCCeEEE-EEccc
Q 037368 90 AQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPIL--L-IAIGL-DNGCIYC-IKGDI 164 (823)
Q Consensus 90 ~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~--~-ia~G~-~dG~V~l-~~~~~ 164 (823)
+.+.++...+. .+...+ ++ + ++.++..-.-..++ . .++.+ ..-.+.+ |++
T Consensus 90 -------i~~~~l~~~~~------~~~~~~-~K------g---~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~-- 144 (877)
T KOG2063|consen 90 -------IAVHKLPELEP------VPSGTR-LK------G---ASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNG-- 144 (877)
T ss_pred -------ceeeecCcccc------cccccc-cc------c---ceeeccccccccCCcceEEEEeeccceEEEEEecC--
Confidence 77777764431 110000 00 0 12222111100000 0 11111 1222222 222
Q ss_pred ccccccceeEEec--CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCC-cceEEcc---CCCccceecccCCC-eE
Q 037368 165 ARERITRFKLQVD--NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPP-KRQFLDN---IGCSTNSVAMSDRL-EL 237 (823)
Q Consensus 165 ~~~~~~k~~~~~~--~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~-~~~~l~~---~~~~~~~~~~s~~~-~l 237 (823)
+. ......+ -.....+++| +| .+++++..+.-.+....+++. +...+.+ ...+ .+++--.++ .+
T Consensus 145 ---~~-~~~~~~~~~~~~~p~~~~~--~~--~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~-P~I~~l~~~~~l 215 (877)
T KOG2063|consen 145 ---RD-GIVLVKELGFPDVPKARAW--CG--HIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRK-PLIKSLSDQSEL 215 (877)
T ss_pred ---CC-ceEEEEecccccchhhhcc--cc--eeEEEeecceeEEEecCCCccccceeeeccccccCC-CeEEEecCCceE
Confidence 11 0111111 1222333333 34 345555443433443333331 1111111 1122 223322355 78
Q ss_pred EEeeCCeEEEEecCCCCc---cccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEec-cccceeEEEeec
Q 037368 238 IIGRPEAVYFYEVDGRGP---CWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSL-VVKEVSHMLCEW 313 (823)
Q Consensus 238 iv~~~~~I~i~~~~g~~~---~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~-~i~~v~~v~~~~ 313 (823)
++|.|+...+-+.+|... .+.|...+..+.+..+|++++.+ ..|.||+..++...++. .++...++++..
T Consensus 216 l~~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~PYlIa~~~------~~veI~s~~~~qlvQSI~~~~~~~~l~s~~ 289 (877)
T KOG2063|consen 216 LLGKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVESPYLIALLD------RSVEIRSKLDGQLVQSITPLSNGRSLLSAH 289 (877)
T ss_pred EEccCceEEEEecCCcccCCCceEecccchhhcccCceEEEEcc------ccEEEEeccCHHHhhccccccccceeeecC
Confidence 888888767767776531 24566566778888899999974 48999999887655666 667777788888
Q ss_pred CcEEEEEcCCeEEEEeecC-hHHHHHHHHHhccHHHHHHHHHhcCCC-HH---HHHHHHHHH-hhhhccCCCHHHHHHHH
Q 037368 314 GNIILVMTDKSVLCIGEKD-MESKLDMLFKKNLYTVAINLVQSQQAD-AA---ATAEVLRKY-GDHLYSKQDYDEAMSQY 387 (823)
Q Consensus 314 ~~~~vvs~~~~v~~l~~~~-~~~~i~~L~~~~~f~~Al~la~~~~~~-~~---~~~~I~~~y-~d~L~~k~~y~~A~~~y 387 (823)
++++++++-..+|++.+.+ ...+++.|+..+.|++|+.+|+....+ +. .+..++..+ |-.+|.+|+|++|++.|
T Consensus 290 ~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F 369 (877)
T KOG2063|consen 290 NGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLF 369 (877)
T ss_pred CcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8999888878899999999 999999999999999999999986543 22 355566677 77899999999999999
Q ss_pred HHHhCCcChHHHHHHhhch----h-----------hHH------------HHHHHHHHHHHc-----CCCC---------
Q 037368 388 ILTIGHLEPSYVIQKFLDA----Q-----------RIY------------NLTNYLEKLHEK-----GFAS--------- 426 (823)
Q Consensus 388 ~~ti~~~eps~vI~kFl~~----~-----------~~~------------~L~~YL~~l~~~-----~~~~--------- 426 (823)
.+. ..+|..||..|++. . +++ .++.||...+.. ...+
T Consensus 370 ~~~--~~d~~~vi~lfP~l~p~~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~~~~~~ 447 (877)
T KOG2063|consen 370 EKS--EIDPRHVISLFPDLLPSENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYMNYFKN 447 (877)
T ss_pred Hhh--ccChHHHHHhchhhcCCcccccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHHhhhhc
Confidence 997 66788999999641 0 111 456666432210 0000
Q ss_pred ---------------hhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHH
Q 037368 427 ---------------KDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHEL 491 (823)
Q Consensus 427 ---------------~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~ 491 (823)
..-+|.|++||...+. ...-.+++..+ ..|+++.+..+|.+++++.+++.|++..|+|++
T Consensus 448 ~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~-~~v~~llrlen----~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~ 522 (877)
T KOG2063|consen 448 TLISELLKSDLNDILELIDTTLLKCYLETNP-GLVGPLLRLEN----NHCDVEEIETVLKKSKKYRELIELYATKGMHEK 522 (877)
T ss_pred cCcchhhccchHHHHHHHHHHHHHHHHhcCc-hhhhhhhhccC----CCcchHHHHHHHHhcccHHHHHHHHHhccchHH
Confidence 1125668899998764 44555666553 379999999999999999999999999999999
Q ss_pred HHHHHHHhhc-----------CHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCc
Q 037368 492 YLKILLEDLG-----------RYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDILLRLCTEDGESTKRGASSST 560 (823)
Q Consensus 492 ~l~il~~~~~-----------~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~ 560 (823)
+|++|.+... .++..++||+++..++ .+++++|+.|+++++|++++++|++.....
T Consensus 523 AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~-~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~------------ 589 (877)
T KOG2063|consen 523 ALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN-LDLILEYADWVLNKNPEAGIQIFTSEDKQE------------ 589 (877)
T ss_pred HHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc-hhHHHHHhhhhhccCchhheeeeeccChhh------------
Confidence 9999987422 4678999999998774 579999999999999999999988721111
Q ss_pred ccCCCCCHHHHHhhhcc-CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhcccccc-CCcccccCcccccccccCCCCC
Q 037368 561 YMSMLPSPVDFLNIFVH-HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLN-FPSISQLNDGVDLRLRSGSGLP 638 (823)
Q Consensus 561 ~~~~~~~~~~~~~~f~~-~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 638 (823)
...+++++++..+.. +|..++.|||+++..+... +..+||.++.+|++. .. ...
T Consensus 590 --~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~--~~~lht~ll~ly~e~-v~~~~~------------------- 645 (877)
T KOG2063|consen 590 --AESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT--STLLHTVLLKLYLEK-VLEQAS------------------- 645 (877)
T ss_pred --hccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc--chHHHHHHHHHHHHH-HhhccC-------------------
Confidence 135889999996654 7999999999999988654 579999999999997 33 110
Q ss_pred CcccCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHH
Q 037368 639 KAEYNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACY 718 (823)
Q Consensus 639 ~~~~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~ 718 (823)
.+.|+++..|.. +|+++..||+. +..|+++..|......+|+++++.+++|||.|++||.+|
T Consensus 646 ---------~~~kg~e~~E~~--~rekl~~~l~~-------s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 646 ---------TDGKGEEAPETT--VREKLLDFLES-------SDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred ---------chhccccchhhh--HHHHHHHHhhh-------hcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH
Confidence 011211111111 59999999999 999999998888888999999999999999999999999
Q ss_pred Hh-cCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCCCCHHHHHHHHHHHHhCC-CCChHHHHHHhcCCCCcchHH
Q 037368 719 TQ-AHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERDD-ILPPIVVLQTLSRNPCLTLSV 796 (823)
Q Consensus 719 ~~-~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~~~~~~i~~~L~~i~~~~-~l~p~~vl~~l~~~~~~~~~~ 796 (823)
++ .+|+++|..||..+++ +.+.+.+.+..+|+.++.+..+-...-..+|+.+..+. -++|..|++.|| +.+++..
T Consensus 708 v~~L~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp--~~~sl~~ 784 (877)
T KOG2063|consen 708 VHELDDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLLP--DDISLKD 784 (877)
T ss_pred HHHhcchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhCC--ccCcHhH
Confidence 99 6999999999999886 34557789999999999872221111133444444444 599999999998 8999999
Q ss_pred HHHHHHHHHHHH
Q 037368 797 IKDYIARKLEQE 808 (823)
Q Consensus 797 vk~~l~~~l~~~ 808 (823)
+-.++.+.|++.
T Consensus 785 ~~~~l~~~Lr~~ 796 (877)
T KOG2063|consen 785 LCSFLSKLLRKR 796 (877)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 4
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-40 Score=366.78 Aligned_cols=446 Identities=20% Similarity=0.251 Sum_probs=344.8
Q ss_pred EEEEEeCCCCEEEEeccccc-----eeEEEe--ecCcEEEEEcCCeEEEE-eecChHHHHHHHHHhccHHHHHHHHHhcC
Q 037368 286 IFNVYDLKNRLIAHSLVVKE-----VSHMLC--EWGNIILVMTDKSVLCI-GEKDMESKLDMLFKKNLYTVAINLVQSQQ 357 (823)
Q Consensus 286 ~I~I~D~~~~~i~~~~~i~~-----v~~v~~--~~~~~~vvs~~~~v~~l-~~~~~~~~i~~L~~~~~f~~Al~la~~~~ 357 (823)
+|.+...-++.+.+...+.. +.++.+ ..+ .|++-+...++++ .....++.|+.++++|.|+.|+++|+.
T Consensus 307 ~V~avs~Ln~~vI~~~~~n~s~~g~~LGlv~D~va~-~~w~YTq~~vf~~~vndE~R~vWk~yLd~g~y~kAL~~ar~-- 383 (911)
T KOG2034|consen 307 RVLAVSLLNGEVIYRDQFNESELGGILGLVSDSVAE-TFWLYTQTSVFEYGVNDEARDVWKTYLDKGEFDKALEIART-- 383 (911)
T ss_pred ceeeeeccCccccchhccCchhcccceeeeeccccc-eEEEEEeceeeeeeeccchHHHHHHHHhcchHHHHHHhccC--
Confidence 56666665555555443322 333322 233 4444445678888 456779999999999999999999965
Q ss_pred CCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHHHHHHHHHHHHcCC-CChhHHH----H
Q 037368 358 ADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGF-ASKDHTT----L 432 (823)
Q Consensus 358 ~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~~-~~~~~~~----l 432 (823)
++..++.+.+++||++|+.++|..||+.|+++..+|| +|..||+..++-..|..||.+..++-. ..+.+.+ +
T Consensus 384 -~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE--EVaLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~W 460 (911)
T KOG2034|consen 384 -RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE--EVALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTW 460 (911)
T ss_pred -CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH--HHHHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 4788999999999999999999999999999987777 899999999999999999988544322 3334433 4
Q ss_pred HHHHHH-hcCChh-hHHHhhcCCC--------------CCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHH
Q 037368 433 LLNCYT-KLKDVE-KLNMFIKGED--------------GVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKIL 496 (823)
Q Consensus 433 Ll~~y~-kl~~~~-~l~~fi~~~~--------------~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il 496 (823)
|++.|. ++++.+ ..+.|+.++. .......|.+++++++.++|+.++++++|...++++.++.++
T Consensus 461 Llel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~ 540 (911)
T KOG2034|consen 461 LLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYW 540 (911)
T ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 555553 455533 2222222221 000114689999999999999999999999999999999999
Q ss_pred HHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHHHhhhc
Q 037368 497 LEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFV 576 (823)
Q Consensus 497 ~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 576 (823)
+.. ++|.+||+.+.+...+ ++.++|++.|+.+.|++|++.|+..- +...++.+.+++.
T Consensus 541 ~q~-e~yeeaLevL~~~~~~---el~yk~ap~Li~~~p~~tV~~wm~~~------------------d~~~~~li~~~L~ 598 (911)
T KOG2034|consen 541 IQQ-ENYEEALEVLLNQRNP---ELFYKYAPELITHSPKETVSAWMAQK------------------DLDPNRLIPPILS 598 (911)
T ss_pred HHH-HHHHHHHHHHHhccch---hhHHHhhhHHHhcCcHHHHHHHHHcc------------------ccCchhhhHHHHH
Confidence 988 9999999999997544 59999999999999999999999852 2333444444442
Q ss_pred ---c-----CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcccCCcccc
Q 037368 577 ---H-----HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAEYNGEVTA 648 (823)
Q Consensus 577 ---~-----~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 648 (823)
+ .+.+.++||++|+...+.+ .+.+||.++.||+.. .
T Consensus 599 ~~~~~~~~~~~~~~i~yl~f~~~~l~~~--~~~ihn~ll~lya~~---~------------------------------- 642 (911)
T KOG2034|consen 599 YFSNWHSEYEENQAIRYLEFCIEVLGMT--NPAIHNSLLHLYAKH---E------------------------------- 642 (911)
T ss_pred HHhcCCccccHHHHHHHHHHHHHhccCc--CHHHHHHHHHHhhcC---C-------------------------------
Confidence 2 3568899999999888765 479999999999987 1
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHhcCChhHHH
Q 037368 649 DGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQAHDHEGLI 728 (823)
Q Consensus 649 ~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~~~d~~~~i 728 (823)
|+.++-+|+. .++..+..+||+++|+++|..++..+.+|+|+.+|++|++|++++++.+ ++.|
T Consensus 643 --------------~~~ll~~le~-~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d-~dla- 705 (911)
T KOG2034|consen 643 --------------RDDLLLYLEI-IKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD-IDLA- 705 (911)
T ss_pred --------------ccchHHHHHH-HhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC-HHHH-
Confidence 1233333332 2223347899999999999999999999999999999999999999865 5544
Q ss_pred HHHHHhCCCCC---CCCcchHHHHHHHhccCCCCCHHHHHHHHHHHHhCCCCChHHHHHHhcCCCCcchHHHHHHHHHHH
Q 037368 729 ACCKRLGDSGK---GGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERDDILPPIVVLQTLSRNPCLTLSVIKDYIARKL 805 (823)
Q Consensus 729 ~~~~~~~~~~~---~~~~~Lw~~ll~~~~~~~~~~~~~i~~~L~~i~~~~~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l 805 (823)
+.-++.+. +.++.||+.+++|+++..++ |++.++.++.+++|...++|++++ ++++++++|+.||..|
T Consensus 706 ---k~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~----ikk~i~~Lk~~~lLkiedlLpffp--df~~id~~keaic~~L 776 (911)
T KOG2034|consen 706 ---KVIANDPEEDEDLRKKLWLKIAKHVVKQEND----IKKAIRFLKENELLTIEDLLPFFP--DFTKIDNLKEAICDFL 776 (911)
T ss_pred ---hhhhcChhhHHHHHHHHHHHHHHHHHHhhcc----HHHHHHHhccCcccchhhhhcccc--chhhhhhhHHHHHHHH
Confidence 44333322 13458999999999998754 788888888889999999999997 9999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 037368 806 EQESKLIEGDRRAIEN 821 (823)
Q Consensus 806 ~~~~~~i~~~~~~i~~ 821 (823)
+.+|++|++.+++|.+
T Consensus 777 ~~~n~rieel~~em~e 792 (911)
T KOG2034|consen 777 EDYNKRIEELQEEMIE 792 (911)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-24 Score=221.11 Aligned_cols=283 Identities=14% Similarity=0.158 Sum_probs=196.1
Q ss_pred ccccccCCCCCCCCcCCCC-eEEEee-CC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEec
Q 037368 9 FFEEKYGGKSTIPEEVSGN-ITCCSS-GR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGE 84 (823)
Q Consensus 9 ff~~~~~~~~~~~~~~~~~-is~~~~-~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~ 84 (823)
.|...+|....-++.++.. |-|+.+ +. ..|++|+.|-++++|| .+-.+..+.++|..-|.|++++|||+.|||++.
T Consensus 98 vfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 98 VFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred hhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 5666666666556666554 555554 43 5899999999999999 556788899999999999999999999999999
Q ss_pred CCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec-----CCCCcceEEEEEeCCeEEE
Q 037368 85 DEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE-----EAPPILLIAIGLDNGCIYC 159 (823)
Q Consensus 85 D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-----d~~~~~~ia~G~~dG~V~l 159 (823)
||+ |++||..+... .-++++.| .-+ |++++|.| ..+. +|+++.||+|++
T Consensus 178 dg~---------I~lwdpktg~~---------~g~~l~gH--~K~---It~Lawep~hl~p~~r~---las~skDg~vrI 231 (480)
T KOG0271|consen 178 DGS---------IRLWDPKTGQQ---------IGRALRGH--KKW---ITALAWEPLHLVPPCRR---LASSSKDGSVRI 231 (480)
T ss_pred CCe---------EEEecCCCCCc---------ccccccCc--ccc---eeEEeecccccCCCccc---eecccCCCCEEE
Confidence 998 99999875431 23344433 223 99999954 5567 999999999999
Q ss_pred EEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCC--------------------------
Q 037368 160 IKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQ-------------------------- 212 (823)
Q Consensus 160 ~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~-------------------------- 212 (823)
|+... +.....+..+..+||++.|..+| .++.++.+ +|++|+....
T Consensus 232 Wd~~~----~~~~~~lsgHT~~VTCvrwGG~g---liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 232 WDTKL----GTCVRTLSGHTASVTCVRWGGEG---LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred EEccC----ceEEEEeccCccceEEEEEcCCc---eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 98642 22334455667889998887665 67777654 5888875431
Q ss_pred ----------------------------------------------------CCcceEEccCCCccceecccCCCeEEEe
Q 037368 213 ----------------------------------------------------PPKRQFLDNIGCSTNSVAMSDRLELIIG 240 (823)
Q Consensus 213 ----------------------------------------------------~~~~~~l~~~~~~~~~~~~s~~~~liv~ 240 (823)
.++...+.+|...++.+.||||++++++
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 0011112234445566677777776653
Q ss_pred e--CCeEEEEecCCCCccccccCC---eEEEEeeCc--EEEEEEecCCCCccEEEEEeCCCCEEEEecc--ccceeEE-E
Q 037368 241 R--PEAVYFYEVDGRGPCWAFEGE---KKLLGWFRG--YLLCVIADQRNSKNIFNVYDLKNRLIAHSLV--VKEVSHM-L 310 (823)
Q Consensus 241 ~--~~~I~i~~~~g~~~~~~~~g~---~~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~--i~~v~~v-~ 310 (823)
. |++|++|+.+...-..+|.|| ...++|..+ .||++| .|.|++|||+.++.+.+... -..|..+ .
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S-----kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS-----KDSTLKVWDVRTKKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC-----CCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence 2 457777765522222357776 456777655 444444 57899999999998876543 2235544 6
Q ss_pred eecCcEEEEEcCCeEEEEe
Q 037368 311 CEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 311 ~~~~~~~vvs~~~~v~~l~ 329 (823)
+++|+..+.+..+++++++
T Consensus 460 spDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCCceeecCCCceEEEee
Confidence 7888888777778899987
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.3e-24 Score=219.53 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=196.3
Q ss_pred CCeE-EEeeC-CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecC--CCEEEEEecCCCCcccccceeEEEE
Q 037368 26 GNIT-CCSSG-RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQ--RNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 26 ~~is-~~~~~-~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~--~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
-+|+ |.++. ++.|+|||.+|.+++|+ ++.+.+.+|++|++.|.++.|+|. +..|||||.||+ +|+|
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt---------vklw 246 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT---------VKLW 246 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc---------eeee
Confidence 3464 44443 46899999999999999 788889999999999999999996 568999999999 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe--cC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV--DN 178 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~--~~ 178 (823)
+++.. + .++.+..| + .+|..|+|+|+|+. +++|+-|.+=++||.. .+...++ .+
T Consensus 247 ~~~~e--------~--~l~~l~gH----~-~RVs~VafHPsG~~---L~TasfD~tWRlWD~~------tk~ElL~QEGH 302 (459)
T KOG0272|consen 247 KLSQE--------T--PLQDLEGH----L-ARVSRVAFHPSGKF---LGTASFDSTWRLWDLE------TKSELLLQEGH 302 (459)
T ss_pred ccCCC--------c--chhhhhcc----h-hhheeeeecCCCce---eeecccccchhhcccc------cchhhHhhccc
Confidence 99842 2 34455533 2 45999999999999 9999999999999863 2333332 34
Q ss_pred CCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEE-Eee-CCeEEEEecCCCCc
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGR-PEAVYFYEVDGRGP 255 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~-~~~I~i~~~~g~~~ 255 (823)
..+|.+++|.+|| .+++++.-+ -=++||+++. .....|++|..++..+.|||+|..+ +|+ |++++||+++++..
T Consensus 303 s~~v~~iaf~~DG--SL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 303 SKGVFSIAFQPDG--SLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred ccccceeEecCCC--ceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 7789999999999 444444433 3689999864 3667788999999999999999854 554 45899999998877
Q ss_pred cccccCCe---EEE--Ee-eCcEEEEEEecCCCCccEEEEEeCCCCEEE--EeccccceeEE-EeecCcEEEEEcCCeEE
Q 037368 256 CWAFEGEK---KLL--GW-FRGYLLCVIADQRNSKNIFNVYDLKNRLIA--HSLVVKEVSHM-LCEWGNIILVMTDKSVL 326 (823)
Q Consensus 256 ~~~~~g~~---~~i--~~-~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~--~~~~i~~v~~v-~~~~~~~~vvs~~~~v~ 326 (823)
.+.+++|. +.+ .+ .|.+|++++. |++++||...+-... ..++-..|..+ .+.+++.++.++-+..+
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~ 454 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI 454 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence 77777773 223 33 4568888874 589999987663321 12233335444 56677777777666677
Q ss_pred EEe
Q 037368 327 CIG 329 (823)
Q Consensus 327 ~l~ 329 (823)
+||
T Consensus 455 KLW 457 (459)
T KOG0272|consen 455 KLW 457 (459)
T ss_pred eec
Confidence 776
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-22 Score=197.93 Aligned_cols=268 Identities=14% Similarity=0.148 Sum_probs=195.0
Q ss_pred CeEEEee---CCCEEEEEecCCeEEEEc------CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 27 NITCCSS---GRGKVVIGCDDGAVSLLD------RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 27 ~is~~~~---~~~~l~~gs~dG~i~~~d------~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
.|+..+. .++.++.++.|.++.+|+ ..|.+.+.|+||+..|+.+..+++|++.+|+|.|++ +
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~---------l 87 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT---------L 87 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce---------E
Confidence 3655554 356889999999999998 236789999999999999999999999999999998 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
++||+... ++.+.+..| +.- |.+|||+||.++ |++|+.|.+|.+|+.- .+.+..+...
T Consensus 88 rlWDl~~g----------~~t~~f~GH--~~d---Vlsva~s~dn~q---ivSGSrDkTiklwnt~----g~ck~t~~~~ 145 (315)
T KOG0279|consen 88 RLWDLATG----------ESTRRFVGH--TKD---VLSVAFSTDNRQ---IVSGSRDKTIKLWNTL----GVCKYTIHED 145 (315)
T ss_pred EEEEecCC----------cEEEEEEec--CCc---eEEEEecCCCce---eecCCCcceeeeeeec----ccEEEEEecC
Confidence 99999843 244455544 233 999999999999 9999999999999852 1233332223
Q ss_pred C-CCCcceEEEeecC-CeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC--CeEEEEecCCC
Q 037368 178 N-QCSVMGLGFRVDG-QALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEVDGR 253 (823)
Q Consensus 178 ~-~~~It~l~fs~dg-~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~ 253 (823)
+ .+-|+++.|+|+. .+.++-++.++.|++||+++- +..+.+.+|...++.+++||||.+.++++ +.+.+|+++..
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence 3 6889999999985 223344444667999999863 46677778888899999999999887543 57899999865
Q ss_pred CccccccCC--eEEEEeeCc-EEEEEEecCCCCccEEEEEeCCCCEEEEeccc---------cceeE---EEeecCcEEE
Q 037368 254 GPCWAFEGE--KKLLGWFRG-YLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV---------KEVSH---MLCEWGNIIL 318 (823)
Q Consensus 254 ~~~~~~~g~--~~~i~~~~~-ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i---------~~v~~---v~~~~~~~~v 318 (823)
..++.+++- ...+++..+ |.++... ...|+|||++.+.+..+... ..+.. .++.+|+.++
T Consensus 225 k~lysl~a~~~v~sl~fspnrywL~~at-----~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 225 KNLYSLEAFDIVNSLCFSPNRYWLCAAT-----ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred ceeEeccCCCeEeeEEecCCceeEeecc-----CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 566777653 234444333 4444432 35799999998765543321 11222 2566777777
Q ss_pred EEcCCeEEEEeec
Q 037368 319 VMTDKSVLCIGEK 331 (823)
Q Consensus 319 vs~~~~v~~l~~~ 331 (823)
..-...++++++.
T Consensus 300 ~g~td~~irv~qv 312 (315)
T KOG0279|consen 300 AGYTDNVIRVWQV 312 (315)
T ss_pred eeecCCcEEEEEe
Confidence 7666678888764
No 8
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.2e-22 Score=223.21 Aligned_cols=511 Identities=18% Similarity=0.218 Sum_probs=356.9
Q ss_pred EEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC
Q 037368 134 TSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP 213 (823)
Q Consensus 134 ~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~ 213 (823)
-++-.+|+... +|.-. .+++.+++.. +.+|... +...+.|.-=.|-.+ ..+.-.|++.|+.|.+++..
T Consensus 68 dSaIm~P~kkv---ialka-~~~lQIFniE----~KsK~ks-h~m~E~VifWkWIs~---kti~lVT~tsV~hws~egds 135 (1666)
T KOG0985|consen 68 DSAIMNPDKKV---IALKA-GKTLQIFNIE----RKSKSKA-HTMDEDVIFWKWISD---KTIALVTATSVYHWSKEGDS 135 (1666)
T ss_pred CchhhCchHHH---HHHhh-CCeEEEEehh----hhhhhcc-CCCCCceEEEEecch---hHHHHhhhhheeeecccccc
Confidence 34445777666 55433 5577788754 2222211 122445544333333 24555677889999998866
Q ss_pred CcceEEccCCCccceecccC----CC-eE-EEee-------CCeEEEEecCCCCcccc------------ccCC--eEEE
Q 037368 214 PKRQFLDNIGCSTNSVAMSD----RL-EL-IIGR-------PEAVYFYEVDGRGPCWA------------FEGE--KKLL 266 (823)
Q Consensus 214 ~~~~~l~~~~~~~~~~~~s~----~~-~l-iv~~-------~~~I~i~~~~g~~~~~~------------~~g~--~~~i 266 (823)
.|...++.|....+|...+- .. .+ ++|- .+.+++|+++.+ .+.. .+|. +..+
T Consensus 136 ~PvkmfdRh~sL~gcQiInyk~~~~~eWl~LVGIs~r~~rv~G~MQLyS~~rk-vSQ~iegHaa~Fa~fk~egne~p~~l 214 (1666)
T KOG0985|consen 136 APVKMFDRHRSLNGCQIINYKGNLNAEWLALVGISARTNRVAGKMQLYSVDRK-VSQPIEGHAASFAAFKDEGNEVPSCL 214 (1666)
T ss_pred hHHHHHHhhhccccceEEEeccccccCceeEEeeecccchhheeeeeeeeccc-hhhhhHHHHHHHHHhcccCCCCceEE
Confidence 78888888877777765542 22 23 3332 256788887632 1111 2231 2222
Q ss_pred Eee------Cc--EEEEEEecCC--------------------------------------CCccEEEEEeCCCCEEEEe
Q 037368 267 GWF------RG--YLLCVIADQR--------------------------------------NSKNIFNVYDLKNRLIAHS 300 (823)
Q Consensus 267 ~~~------~~--ylv~~s~d~~--------------------------------------~~~~~I~I~D~~~~~i~~~ 300 (823)
-++ +. +++-+..+.. ...|.+.+||+++++..+.
T Consensus 215 F~fa~r~~~~GkLhiiEvg~~~tg~~~f~kk~vDvffppda~nDFPvamqvs~k~~vIyLiTKyG~ihlYdlEt~tciy~ 294 (1666)
T KOG0985|consen 215 FSFAVRKPTGGKLHIIEVGDPPTGNMPFLKKKVDVFFPPDAINDFPVAMQVSAKYGVIYLITKYGYIHLYDLETGTCIYR 294 (1666)
T ss_pred EEecCCCCCCCeeEEEecCCCccCCCcchhhhhhccCChhhccccchheeeccccCeEEEEeecchhhhhhhhhhhhhhh
Confidence 111 11 2222221110 0456777788888776666
Q ss_pred ccccc-eeEE---EeecCcEEEEEcCCeEEEEeecChHHHHHHHHH-hccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhc
Q 037368 301 LVVKE-VSHM---LCEWGNIILVMTDKSVLCIGEKDMESKLDMLFK-KNLYTVAINLVQSQQADAAATAEVLRKYGDHLY 375 (823)
Q Consensus 301 ~~i~~-v~~v---~~~~~~~~vvs~~~~v~~l~~~~~~~~i~~L~~-~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~ 375 (823)
.++.. ..++ ....++++-+...|+|.... .+.+..+..... -++-++|+.+|.+.++++ ....+.+..+.||
T Consensus 295 NRIs~dtIFvta~~~~s~Gi~~iNrKGQVLsv~-v~e~~IVpyi~~~LqnpeLal~~A~R~nLaG--Ae~Lfv~rFneLf 371 (1666)
T KOG0985|consen 295 NRISADTIFVTAPHDSSSGIQGINRKGQVLSVL-VNEQNIVPYITNVLQNPELALRLAVRANLAG--AENLFVRRFNELF 371 (1666)
T ss_pred hhccccceeEecccccCcchhhhhhcceEEEEE-ecCcceehhhhccccChHHHHHhhhhcCCcc--HHHHHHHHHHHHH
Confidence 66554 3232 23456777777778887665 455555655554 478899999999999987 4566667799999
Q ss_pred cCCCHHHHHHHHHHH-hCCcChHHHHHHhhc----hhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhh
Q 037368 376 SKQDYDEAMSQYILT-IGHLEPSYVIQKFLD----AQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFI 450 (823)
Q Consensus 376 ~k~~y~~A~~~y~~t-i~~~eps~vI~kFl~----~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi 450 (823)
.+|+|++||+..+.+ -|-++...+|.+|-. ++++.+|..|+.+|...|..|+..|..|.+|....++.+.+++|+
T Consensus 372 aqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETLEL~RpVL~Q~RkqLlekWl 451 (1666)
T KOG0985|consen 372 AQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETLELCRPVLQQGRKQLLEKWL 451 (1666)
T ss_pred hCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999998877 445788899999975 456778999999999999999999999999999999999999999
Q ss_pred cCCCCC-----Ccc--cCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHH
Q 037368 451 KGEDGV-----GEH--KFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVK 523 (823)
Q Consensus 451 ~~~~~~-----~~~--~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~ 523 (823)
+..+.+ |++ .+|...|.++..+++ -+.+++.++.|- |++++++-|.++.+....+-.+.
T Consensus 452 ~EdKLeCSEELGDlVK~~d~~lAL~iYlrAn-------------vp~KVi~cfAE~-Gqf~KiilY~kKvGyTPdymflL 517 (1666)
T KOG0985|consen 452 KEDKLECSEELGDLVKPYDTTLALSIYLRAN-------------VPAKVIQCFAET-GQFKKIILYAKKVGYTPDYMFLL 517 (1666)
T ss_pred hhhhhhhhHHhcCccccCCchHHHHHHHHcC-------------CcHHHHHHHHHh-cchhHHHHHHHHcCCCccHHHHH
Confidence 988742 444 456666666655544 677899999987 99999999999998765444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhh
Q 037368 524 EYGKILIEHKPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVE 601 (823)
Q Consensus 524 k~~~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~ 601 (823)
+ .|++.+|+++.++.+.+..+.. -..+...++.+|.. ..+....||...++.+ +|+...
T Consensus 518 q---~l~r~sPD~~~qFa~~l~Q~~~--------------~~~die~I~DlFme~N~iQq~TSFLLdaLK~~--~Pd~g~ 578 (1666)
T KOG0985|consen 518 Q---QLKRSSPDQALQFAMMLVQDEE--------------PLADIEQIVDLFMELNLIQQCTSFLLDALKLN--SPDEGH 578 (1666)
T ss_pred H---HHHccChhHHHHHHHHhhccCC--------------CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCC--Chhhhh
Confidence 4 4999999999999988765432 25778899999976 4567899999999875 455789
Q ss_pred HHHHHHHHhccccccCCcccccCcccccccccCCCCCCcccCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCC
Q 037368 602 IHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAEYNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHP 681 (823)
Q Consensus 602 ~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~ 681 (823)
+.++|||+.+.. + .+-+..+|-+. --.
T Consensus 579 LQTrLLE~NL~~--a----------------------------------------------PqVADAILgN~-----mFt 605 (1666)
T KOG0985|consen 579 LQTRLLEMNLVH--A----------------------------------------------PQVADAILGND-----MFT 605 (1666)
T ss_pred HHHHHHHHHhcc--c----------------------------------------------hHHHHHHHhcc-----ccc
Confidence 999999999986 2 15667777762 256
Q ss_pred CCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCCC-C
Q 037368 682 LYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGED-C 760 (823)
Q Consensus 682 ~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~~-~ 760 (823)
+||. ++++-||+|.|++++||++|.+.-|+.+++-..... +.-| ++.||.+..-. .
T Consensus 606 HyDr-------------a~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L--------~pEw--Lv~yFg~lsve~s 662 (1666)
T KOG0985|consen 606 HYDR-------------AEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLL--------NPEW--LVNYFGSLSVEDS 662 (1666)
T ss_pred cccH-------------HHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccC--------CHHH--HHHHHHhcCHHHH
Confidence 7886 788999999999999999999998988888655543 3578 68899886532 2
Q ss_pred HHHHHHHHH
Q 037368 761 SKEVKEVLT 769 (823)
Q Consensus 761 ~~~i~~~L~ 769 (823)
-++++.+|.
T Consensus 663 ~eclkaml~ 671 (1666)
T KOG0985|consen 663 LECLKAMLS 671 (1666)
T ss_pred HHHHHHHHH
Confidence 356666665
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.91 E-value=2.2e-22 Score=193.77 Aligned_cols=264 Identities=12% Similarity=0.158 Sum_probs=196.0
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
-.|++++.|.+|++|. .+|.+.++++--.+.|+.+.+.|++..||+++.-. ||+||+.+. +
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh----------vRlyD~~S~--------n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH----------VRLYDLNSN--------N 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe----------eEEEEccCC--------C
Confidence 4679999999999999 89999999997789999999999999999988765 999999853 4
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeE
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQAL 194 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~ 194 (823)
|..+.++..+. ..|++|.|..||+. +.+|+.||+|++|+. |. ...+..++...||+++...|+. .
T Consensus 73 p~Pv~t~e~h~-----kNVtaVgF~~dgrW---MyTgseDgt~kIWdl---R~--~~~qR~~~~~spVn~vvlhpnQ--t 137 (311)
T KOG0315|consen 73 PNPVATFEGHT-----KNVTAVGFQCDGRW---MYTGSEDGTVKIWDL---RS--LSCQRNYQHNSPVNTVVLHPNQ--T 137 (311)
T ss_pred CCceeEEeccC-----CceEEEEEeecCeE---EEecCCCceEEEEec---cC--cccchhccCCCCcceEEecCCc--c
Confidence 54566776441 23999999999999 999999999999986 22 2223345668999999999986 5
Q ss_pred EEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC--CeEEEEecCCCC-cc-----ccc---cCC
Q 037368 195 QLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEVDGRG-PC-----WAF---EGE 262 (823)
Q Consensus 195 ~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~~-~~-----~~~---~g~ 262 (823)
.|++++.+ .|++||+..........++....+.+++..|||.++++.. +..++|+.-+.. .+ ..+ +++
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 67777765 5999999875433333445567788889999999877644 589999975421 11 122 333
Q ss_pred --eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc----eeE-EEeecCcEEEEEcCCeEEEEeecChHH
Q 037368 263 --KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE----VSH-MLCEWGNIILVMTDKSVLCIGEKDMES 335 (823)
Q Consensus 263 --~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~----v~~-v~~~~~~~~vvs~~~~v~~l~~~~~~~ 335 (823)
+..++++..||++.+. +.+++||..++- +-.+..+.. +.. +|+.+|.++|-++++...++|+....+
T Consensus 218 il~C~lSPd~k~lat~ss-----dktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSS-----DKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred EEEEEECCCCcEEEeecC-----CceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 3457778889999884 589999998875 222222111 443 378787776666677789998877665
Q ss_pred HHH
Q 037368 336 KLD 338 (823)
Q Consensus 336 ~i~ 338 (823)
.+.
T Consensus 292 ~v~ 294 (311)
T KOG0315|consen 292 EVR 294 (311)
T ss_pred eee
Confidence 443
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.4e-23 Score=212.18 Aligned_cols=231 Identities=11% Similarity=0.062 Sum_probs=180.1
Q ss_pred CcCCC-CeEEEeeCCC----EEEEEecCCeEEEEcC-CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccce
Q 037368 22 EEVSG-NITCCSSGRG----KVVIGCDDGAVSLLDR-GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 22 ~~~~~-~is~~~~~~~----~l~~gs~dG~i~~~d~-~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~ 95 (823)
+.++. .|.|+.+++. .+++|+.||+|++|+- +-.++..+.+|..+|..++|+|+|++|+|+|.|.|
T Consensus 213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t-------- 284 (459)
T KOG0272|consen 213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST-------- 284 (459)
T ss_pred EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc--------
Confidence 34433 3777777653 7899999999999994 44788899999999999999999999999999998
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ 175 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~ 175 (823)
-++||+.+..+ .+ ..+.| ..+ |.+++|+|||+. +++|+.|..-++||.. .+.+..++
T Consensus 285 -WRlWD~~tk~E---------lL-~QEGH--s~~---v~~iaf~~DGSL---~~tGGlD~~~RvWDlR----tgr~im~L 341 (459)
T KOG0272|consen 285 -WRLWDLETKSE---------LL-LQEGH--SKG---VFSIAFQPDGSL---AATGGLDSLGRVWDLR----TGRCIMFL 341 (459)
T ss_pred -hhhcccccchh---------hH-hhccc--ccc---cceeEecCCCce---eeccCccchhheeecc----cCcEEEEe
Confidence 99999985421 11 11222 233 999999999999 9999999999999862 23334444
Q ss_pred ecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccC-CCeEEE-e-eCCeEEEEecC
Q 037368 176 VDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD-RLELII-G-RPEAVYFYEVD 251 (823)
Q Consensus 176 ~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~-~~~liv-~-~~~~I~i~~~~ 251 (823)
-.+..+|.+|+|+|+| +.|++++ ++++++||++.+. ...++..|...|.-+.++| .|.|++ + .|+++++|..+
T Consensus 342 ~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECCCc--eEEeecCCCCcEEEeeecccc-cceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 4668899999999999 6777775 5679999999765 4677788999999999998 777665 3 35799999988
Q ss_pred CCCccccccCCe-----EEEEeeCcEEEEEEecCCCCccEEEEEe
Q 037368 252 GRGPCWAFEGEK-----KLLGWFRGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 252 g~~~~~~~~g~~-----~~i~~~~~ylv~~s~d~~~~~~~I~I~D 291 (823)
+-.+...+-||. ..+++.+.++++.+. |.++++|.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW~ 458 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLWR 458 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeecc
Confidence 544445666762 246667888988885 58999995
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=2e-21 Score=187.25 Aligned_cols=241 Identities=15% Similarity=0.165 Sum_probs=173.5
Q ss_pred CCCeEEEee--CCCEEEEEecCCeEEEEc-CCC--eeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEE
Q 037368 25 SGNITCCSS--GRGKVVIGCDDGAVSLLD-RGL--KFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 25 ~~~is~~~~--~~~~l~~gs~dG~i~~~d-~~~--~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
+.+|+.... ..+.|++| ..-+|++|| +++ +++.+|.+|++.|+.+.|..+|.++.|+|+||+ +||
T Consensus 40 dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt---------~kI 109 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT---------VKI 109 (311)
T ss_pred ccceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce---------EEE
Confidence 445665554 33456665 477899999 443 478899999999999999999999999999998 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQ 179 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~ 179 (823)
||+.. |.|.|.++ ...| |++|.++|+... +.+|..+|.|++||.. +....-..+-+..
T Consensus 110 WdlR~----------~~~qR~~~---~~sp---Vn~vvlhpnQte---Lis~dqsg~irvWDl~---~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 110 WDLRS----------LSCQRNYQ---HNSP---VNTVVLHPNQTE---LISGDQSGNIRVWDLG---ENSCTHELIPEDD 167 (311)
T ss_pred EeccC----------cccchhcc---CCCC---cceEEecCCcce---EEeecCCCcEEEEEcc---CCccccccCCCCC
Confidence 99983 44655543 2355 999999999999 9999999999999852 1111112233556
Q ss_pred CCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCC-----CcceEEccCCCccceecccCCCeEEE-ee-CCeEEEEecC
Q 037368 180 CSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQP-----PKRQFLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVD 251 (823)
Q Consensus 180 ~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~-----~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~ 251 (823)
.+|.++...||| ..|++++. +..++|++-++. .|...+..|..-+..+.+|||+++++ ++ +.++++|+++
T Consensus 168 ~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 168 TSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred cceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 899999999999 45666654 569999986543 23344555655555668899998664 44 4599999988
Q ss_pred CCCc-cccccCCe-----EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCE--EEEecccc
Q 037368 252 GRGP-CWAFEGEK-----KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRL--IAHSLVVK 304 (823)
Q Consensus 252 g~~~-~~~~~g~~-----~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~--i~~~~~i~ 304 (823)
+--. ...++|+. ..++.++.||+++++ |+++++||+.++. ..+..+..
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass-----d~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASS-----DHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCC-----CCceeecccccCceeeecCCccc
Confidence 5411 13455552 235557889999985 5899999998765 33455543
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.87 E-value=4.4e-21 Score=212.03 Aligned_cols=231 Identities=14% Similarity=0.165 Sum_probs=179.6
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEcCC--------------------------------CeeeEeEeecccceeEE
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLDRG--------------------------------LKFNFGFQAHSSSVLFL 70 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d~~--------------------------------~~~~~~~~~H~~~V~~i 70 (823)
...++|+.+++ ..+|.|..|..|++|.-+ ....+++-||+++|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 55688888865 367899999999999821 01135688999999999
Q ss_pred EEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEE
Q 037368 71 QQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAI 150 (823)
Q Consensus 71 ~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~ 150 (823)
.|+|+.++|+|||+|++ ||+|++.+. .|+-..+ ++.+| |+.|.|+|-|-+ +|+
T Consensus 458 sFsPd~rfLlScSED~s---------vRLWsl~t~----------s~~V~y~--GH~~P---VwdV~F~P~GyY---Fat 510 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSS---------VRLWSLDTW----------SCLVIYK--GHLAP---VWDVQFAPRGYY---FAT 510 (707)
T ss_pred eecccccceeeccCCcc---------eeeeecccc----------eeEEEec--CCCcc---eeeEEecCCceE---EEe
Confidence 99999999999999998 999999853 2544444 33578 999999999999 999
Q ss_pred EEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCcccee
Q 037368 151 GLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSV 229 (823)
Q Consensus 151 G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~ 229 (823)
|+.|++-++|..+ .....+++..+-+.|.++.|.|+. ..++.++.+ .|++||+.+. ...++|.+|..++.++
T Consensus 511 as~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 511 ASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTAL 583 (707)
T ss_pred cCCCceeeeeecc----cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCC-cEEEEecCCCCceEEE
Confidence 9999999999876 233455566677889999999987 466666544 6999998754 4678899999999999
Q ss_pred cccCCCeEEEeeC--CeEEEEecCCCCccccccCC---eEEE--EeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 230 AMSDRLELIIGRP--EAVYFYEVDGRGPCWAFEGE---KKLL--GWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 230 ~~s~~~~liv~~~--~~I~i~~~~g~~~~~~~~g~---~~~i--~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
+|||.|+++++++ +.|.+||+.+......+.|| ...+ +..|..|++.+ .|.+|++||+..
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-----~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-----ADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-----CCCeEEEEEchh
Confidence 9999999877554 47999998754444455565 2333 44566777666 468999999854
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=4.7e-19 Score=193.89 Aligned_cols=193 Identities=17% Similarity=0.262 Sum_probs=151.9
Q ss_pred CCeEEEeeCCC--EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSGRG--KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~~~--~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
+.|+|++.+++ ++|+|..||.|++|| ..|-++.+|..|+..|+.+.|+..|+.|+|.|-||| |+.||+
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt---------VRAwDl 421 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT---------VRAWDL 421 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe---------EEeeee
Confidence 46899997653 889999999999999 778899999999999999999999999999999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC-eEEEEEcccccccccceeEEecCCCC
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG-CIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG-~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
.+. .+-|++.. +.| ....|+|.+|.|.. +.+|..|. .|.+|... +|.-..++..+++|
T Consensus 422 kRY----------rNfRTft~---P~p-~QfscvavD~sGel---V~AG~~d~F~IfvWS~q----TGqllDiLsGHEgP 480 (893)
T KOG0291|consen 422 KRY----------RNFRTFTS---PEP-IQFSCVAVDPSGEL---VCAGAQDSFEIFVWSVQ----TGQLLDILSGHEGP 480 (893)
T ss_pred ccc----------ceeeeecC---CCc-eeeeEEEEcCCCCE---EEeeccceEEEEEEEee----cCeeeehhcCCCCc
Confidence 854 34555431 223 34889999999988 88887765 68889753 44445556678999
Q ss_pred cceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEee-CCeEEEEecC
Q 037368 182 VMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGR-PEAVYFYEVD 251 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~-~~~I~i~~~~ 251 (823)
|.+|+|+|+| ..|+.++ +.+|++|++-.......+++ +...+..++|+|+|. ++|+. ++.|-+|+++
T Consensus 481 Vs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 481 VSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred ceeeEEcccc--CeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 9999999999 4677666 67899999865433444443 445567789999986 66654 5689999875
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.7e-21 Score=193.35 Aligned_cols=237 Identities=17% Similarity=0.223 Sum_probs=184.7
Q ss_pred CeEEEeeCCC--EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSGRG--KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~~~--~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
+|+-+-.++. .++++|.|++|++|| .+|++.++++||+.+|..|+|+..|++|||||.|-+ +++||+.
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~---------~~LWd~~ 180 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS---------AKLWDFD 180 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc---------hhheeHH
Confidence 3555555554 457888999999999 789999999999999999999999999999999997 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
+. .+|+++...+ . ..|.+|+|-|-|.. |++.+.|.+|+.|+.+ .+....++..+++.|.
T Consensus 181 ~~---------~~c~ks~~gh--~---h~vS~V~f~P~gd~---ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 181 TF---------FRCIKSLIGH--E---HGVSSVFFLPLGDH---ILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVR 239 (406)
T ss_pred HH---------HHHHHHhcCc--c---cceeeEEEEecCCe---eeecccccceeEEecc----cceeEEeccCchHhEE
Confidence 52 2466655432 2 23999999999999 9999999999999875 3555556666788999
Q ss_pred eEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccC---------------CCeEEE--eeCCeE
Q 037368 184 GLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD---------------RLELII--GRPEAV 245 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~---------------~~~liv--~~~~~I 245 (823)
.+.-+.|| .++++++. .+|++|-+.++. .+..+..|..++.|++|.| .+++.+ ++|++|
T Consensus 240 ~v~v~~DG--ti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 240 MVRVNQDG--TIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred EEEecCCe--eEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 99999998 45555544 469999998763 6677878888888988764 124443 367899
Q ss_pred EEEecCCCCcc-ccccCC---eE--EEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEecc
Q 037368 246 YFYEVDGRGPC-WAFEGE---KK--LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLV 302 (823)
Q Consensus 246 ~i~~~~g~~~~-~~~~g~---~~--~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~ 302 (823)
++|++. .+.| +++.|| .. .+.+.|.||+++. +|++++|||++++.....-.
T Consensus 317 k~wdv~-tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-----DDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 317 KIWDVS-TGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-----DDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEEecc-CCeEEEEEecccceeeeeEEcCCCeEEEEEe-----cCCcEEEEEeccceeeeccC
Confidence 999997 4566 577777 23 3455699999998 46899999999987665444
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=8e-21 Score=187.18 Aligned_cols=193 Identities=16% Similarity=0.230 Sum_probs=158.4
Q ss_pred CcCCCC-eEEEee-CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeE
Q 037368 22 EEVSGN-ITCCSS-GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 22 ~~~~~~-is~~~~-~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+.++.. ++||.+ .+++|++||.|.+.-+|| .+|+.+..|.+|++-|.+++++| +++.++|+|-|.+ .
T Consensus 141 l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~---------a 211 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS---------A 211 (343)
T ss_pred ecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc---------e
Confidence 344444 688877 568999999999999999 88999999999999999999999 9999999999998 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
++||+.. +.|.+++..+. +.|++|+|.|+|.. +|+|+.|++.++|+. |.-....+++
T Consensus 212 klWD~R~----------~~c~qtF~ghe-----sDINsv~ffP~G~a---fatGSDD~tcRlyDl-----RaD~~~a~ys 268 (343)
T KOG0286|consen 212 KLWDVRS----------GQCVQTFEGHE-----SDINSVRFFPSGDA---FATGSDDATCRLYDL-----RADQELAVYS 268 (343)
T ss_pred eeeeccC----------cceeEeecccc-----cccceEEEccCCCe---eeecCCCceeEEEee-----cCCcEEeeec
Confidence 9999983 45888887552 33999999999999 999999999999986 2222233444
Q ss_pred C---CCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE--eeCCeEEEEe
Q 037368 178 N---QCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII--GRPEAVYFYE 249 (823)
Q Consensus 178 ~---~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv--~~~~~I~i~~ 249 (823)
+ ..+|++++||-.| .+||++. +.++.+||.= ++...-+|.+|...+.|+..+|||.-+. +||..+++|.
T Consensus 269 ~~~~~~gitSv~FS~SG--RlLfagy~d~~c~vWDtl-k~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 HDSIICGITSVAFSKSG--RLLFAGYDDFTCNVWDTL-KGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCcccCCceeEEEcccc--cEEEeeecCCceeEeecc-ccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3 5789999999999 5777764 5679999964 2335566789999999999999998654 4678999994
No 16
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.4e-18 Score=184.67 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=153.0
Q ss_pred CCCe-EEEeeCC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 25 SGNI-TCCSSGR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 25 ~~~i-s~~~~~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
..+| +|.+..+ +.+++|+.|+.|++|+ .+++.+++|.||..-|.+|+++|...+++|+|+|.+ ||+||
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~---------iKlW~ 125 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMT---------IKLWD 125 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccE---------EEEee
Confidence 3345 5555555 6889999999999999 789999999999999999999999999999999998 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecC-CCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEE-APPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d-~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
-++. =.|.+++..|. += |++|+|.|. .+. +|+++.|++|++|... ......++..++.
T Consensus 126 we~~---------wa~~qtfeGH~--Hy---VMqv~fnPkD~nt---FaS~sLDrTVKVWslg----s~~~nfTl~gHek 184 (794)
T KOG0276|consen 126 WENE---------WACEQTFEGHE--HY---VMQVAFNPKDPNT---FASASLDRTVKVWSLG----SPHPNFTLEGHEK 184 (794)
T ss_pred ccCc---------eeeeeEEcCcc--eE---EEEEEecCCCccc---eeeeeccccEEEEEcC----CCCCceeeecccc
Confidence 9853 23777776542 22 999999994 456 9999999999999742 1122334555677
Q ss_pred CcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe-e-CCeEEEEec
Q 037368 181 SVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG-R-PEAVYFYEV 250 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~-~-~~~I~i~~~ 250 (823)
.|.++.|-+.|....|.+++++ .|++||..++. +.++|++|...+.+++|.|.--++++ + |+++++|..
T Consensus 185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred CcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 7999999876622345555554 69999998764 78899999999999999888776654 3 358999963
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=3.5e-19 Score=194.93 Aligned_cols=314 Identities=11% Similarity=0.108 Sum_probs=205.6
Q ss_pred CCCeEEEee-C--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSS-G--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~-~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
.+.|.-|++ + .++++++|+.+.+++|+ ++..+- -+.||+..|.++....+|.+|+|||.|.+ +++|
T Consensus 323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~s---------vilW 392 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKS---------VILW 392 (775)
T ss_pred chhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCce---------EEEE
Confidence 345755554 4 37999999999999999 555544 68899999999997788899999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe----
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV---- 176 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~---- 176 (823)
.++... ....|+.....| . ..|.+|+++..+.. .+|+|+.|+++++|...-.++... ..++
T Consensus 393 r~~~~~------~~~~~~a~~~gH--~---~svgava~~~~~as--ffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~~~ 457 (775)
T KOG0319|consen 393 RLNNNC------SKSLCVAQANGH--T---NSVGAVAGSKLGAS--FFVSVSQDCTLKLWDLPKSKETAF--PIVLTCRY 457 (775)
T ss_pred EecCCc------chhhhhhhhccc--c---cccceeeecccCcc--EEEEecCCceEEEecCCCcccccc--cceehhhH
Confidence 985321 111133222222 2 33999999776533 299999999999997542112111 1221
Q ss_pred ---cCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEE-EeeC-CeEEEEec
Q 037368 177 ---DNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGRP-EAVYFYEV 250 (823)
Q Consensus 177 ---~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~~-~~I~i~~~ 250 (823)
.+.-.|++++.+|+. .++++++.+ ..++|+++. .....+|.+|.-.+.|+.|+|.++++ ++++ .+|++|.+
T Consensus 458 t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred HHHhhcccccceEecCCC--ceEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 246679999999987 466666654 599999983 34677889999999999999977754 5544 59999999
Q ss_pred CCCCcc-ccccCCeE-----EEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEe--ccccceeEE-EeecCcEEEEEc
Q 037368 251 DGRGPC-WAFEGEKK-----LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS--LVVKEVSHM-LCEWGNIILVMT 321 (823)
Q Consensus 251 ~g~~~~-~~~~g~~~-----~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~--~~i~~v~~v-~~~~~~~~vvs~ 321 (823)
+ ...| .+|+||.. .+.-.+..++++. .+|-|+||+++++....+ .+-..|+.. .+..+..++.+.
T Consensus 535 s-~fSClkT~eGH~~aVlra~F~~~~~qliS~~-----adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 535 S-TFSCLKTFEGHTSAVLRASFIRNGKQLISAG-----ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred c-cceeeeeecCccceeEeeeeeeCCcEEEecc-----CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC
Confidence 8 4556 47999843 2344577888876 458999999998764332 222235544 233444444433
Q ss_pred CCeEEEEeecChHHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHH
Q 037368 322 DKSVLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYIL 389 (823)
Q Consensus 322 ~~~v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ 389 (823)
.+.++.++.-......+--.+| .+.+....+--+.|+.+++|.+|.-....
T Consensus 609 ~Dg~i~~wkD~Te~~~~ee~~K-----------------~~eaieq~QeL~n~l~~~~~~~A~~LA~t 659 (775)
T KOG0319|consen 609 GDGRIIFWKDVTEEEQNEEQEK-----------------REEAIEQEQELENLLSQKRYTKAFVLALT 659 (775)
T ss_pred CCeEEEEeecCcHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhhhHHHHHhHhh
Confidence 3345555543333321111111 11112223335567778888888765443
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.86 E-value=8.3e-20 Score=179.16 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=169.2
Q ss_pred CcCCCC-e-EEEeeCC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 22 EEVSGN-I-TCCSSGR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 22 ~~~~~~-i-s~~~~~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+.++.. | .|.++++ ++.++|+.||++++|| .+|+..+.|.+|+.-|.+++|+|+...++|+|-|.| |
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT---------i 129 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT---------I 129 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce---------e
Confidence 344333 5 4555554 5778999999999999 778999999999999999999999999999999999 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecC--CCCcceEEEEEeCCeEEEEEcccccccccceeE-
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEE--APPILLIAIGLDNGCIYCIKGDIARERITRFKL- 174 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d--~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~- 174 (823)
++|+.-. .|.-++. .... ...|+||.|+|+ ... |+.++.|++|++|+.. +.+.+.
T Consensus 130 klwnt~g-----------~ck~t~~--~~~~-~~WVscvrfsP~~~~p~---Ivs~s~DktvKvWnl~-----~~~l~~~ 187 (315)
T KOG0279|consen 130 KLWNTLG-----------VCKYTIH--EDSH-REWVSCVRFSPNESNPI---IVSASWDKTVKVWNLR-----NCQLRTT 187 (315)
T ss_pred eeeeecc-----------cEEEEEe--cCCC-cCcEEEEEEcCCCCCcE---EEEccCCceEEEEccC-----Ccchhhc
Confidence 9999863 2543432 2111 145999999998 456 9999999999999863 233332
Q ss_pred EecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEE-EeeCCeEEEEecCC
Q 037368 175 QVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGRPEAVYFYEVDG 252 (823)
Q Consensus 175 ~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~~~~I~i~~~~g 252 (823)
+..+.+-|+.+.+|||| .+++.+.. +++.+||++.+. ....++ +...+++++|+|+...+ .+.+.+|+||+.+.
T Consensus 188 ~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k-~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGK-NLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLES 263 (315)
T ss_pred cccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCc-eeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence 34567889999999999 44554443 469999998643 345554 66788999999988755 56677999999874
Q ss_pred CCcc--cccc--CC--------eEEEEee--CcEEEEEEecCCCCccEEEEEeC
Q 037368 253 RGPC--WAFE--GE--------KKLLGWF--RGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 253 ~~~~--~~~~--g~--------~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
+... +.++ |+ ...++|+ |..|..+.. ++.|++|.+
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----d~~irv~qv 312 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----DNVIRVWQV 312 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----CCcEEEEEe
Confidence 4211 1111 11 3457776 777777764 578999975
No 19
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.4e-20 Score=189.56 Aligned_cols=238 Identities=15% Similarity=0.125 Sum_probs=169.2
Q ss_pred eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEE
Q 037368 56 FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITS 135 (823)
Q Consensus 56 ~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~ 135 (823)
+..++.||.++|.++.|+|+|..|||+|.|.| +|+||+... +| +.+.+.|. ..|.|
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~T---------vR~WD~~Te--------Tp--~~t~KgH~-----~WVlc 162 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTT---------VRLWDLDTE--------TP--LFTCKGHK-----NWVLC 162 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCce---------EEeeccCCC--------Cc--ceeecCCc-----cEEEE
Confidence 45578899999999999999999999999998 999999853 44 34555332 45999
Q ss_pred EEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCC---eEEEEEEc-CCeEEEEEecC
Q 037368 136 FLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQ---ALQLFAVT-PNSVILFSLQN 211 (823)
Q Consensus 136 va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~---~~~l~~~t-~~~V~~~d~~~ 211 (823)
|+|+|||.. ||+|+.||+|.+|+..- .+..-+.+..+...|++|+|-|-.. ...++.++ ++.|++||+..
T Consensus 163 vawsPDgk~---iASG~~dg~I~lwdpkt---g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 163 VAWSPDGKK---IASGSKDGSIRLWDPKT---GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred EEECCCcch---hhccccCCeEEEecCCC---CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC
Confidence 999999999 99999999999998631 1222334556688999999976421 13455555 45699999976
Q ss_pred CCCcceEEccCCCccceecccCCCeEEEeeC-CeEEEEecCCCCcc-ccccCCe---EEEEee-------------C---
Q 037368 212 QPPKRQFLDNIGCSTNSVAMSDRLELIIGRP-EAVYFYEVDGRGPC-WAFEGEK---KLLGWF-------------R--- 270 (823)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~-~~I~i~~~~g~~~~-~~~~g~~---~~i~~~-------------~--- 270 (823)
+. ...++.+|..++.|+.|-.+|.+..|+. .+|++|+... |.+ -.+.||- ..++.. +
T Consensus 237 ~~-~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 237 GT-CVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred ce-EEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 43 5677789999999999988888888765 5999999763 332 3444541 112111 1
Q ss_pred ----------------------cEEEEEEecCCCCccEEEEEeCCC------CEEEEeccccceeEE-EeecCcEEEEEc
Q 037368 271 ----------------------GYLLCVIADQRNSKNIFNVYDLKN------RLIAHSLVVKEVSHM-LCEWGNIILVMT 321 (823)
Q Consensus 271 ----------------------~ylv~~s~d~~~~~~~I~I~D~~~------~~i~~~~~i~~v~~v-~~~~~~~~vvs~ 321 (823)
..+|+++ .|.++.+|++.. +..+|+.. |.++ |++++.++..++
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgs-----Dd~tlflW~p~~~kkpi~rmtgHq~l---Vn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGS-----DDFTLFLWNPFKSKKPITRMTGHQAL---VNHVSFSPDGRYIASAS 386 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEec-----CCceEEEecccccccchhhhhchhhh---eeeEEECCCccEEEEee
Confidence 2366665 468999998853 23344444 4444 788877776666
Q ss_pred CCeEEEEeecCh
Q 037368 322 DKSVLCIGEKDM 333 (823)
Q Consensus 322 ~~~v~~l~~~~~ 333 (823)
=++-++||.-..
T Consensus 387 FDkSVkLW~g~t 398 (480)
T KOG0271|consen 387 FDKSVKLWDGRT 398 (480)
T ss_pred cccceeeeeCCC
Confidence 566777775443
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.85 E-value=8.6e-21 Score=209.79 Aligned_cols=190 Identities=14% Similarity=0.189 Sum_probs=154.5
Q ss_pred eEEEeeCC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 28 ITCCSSGR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 28 is~~~~~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
..|-++++ .+|++||.|++|++|+ .++..+-.++||..+|+.+.|+|-|-++||+|.|+| .++|..+..
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t---------ArLWs~d~~ 525 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT---------ARLWSTDHN 525 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce---------eeeeecccC
Confidence 36666664 6889999999999999 677777799999999999999999999999999998 999999853
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceE
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGL 185 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l 185 (823)
.| +|.+..+ .+.|.|++|||+..+ +|+|+.|.+|++|+.. +|...+++..+.+||++|
T Consensus 526 --------~P--lRifagh-----lsDV~cv~FHPNs~Y---~aTGSsD~tVRlWDv~----~G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 526 --------KP--LRIFAGH-----LSDVDCVSFHPNSNY---VATGSSDRTVRLWDVS----TGNSVRIFTGHKGPVTAL 583 (707)
T ss_pred --------Cc--hhhhccc-----ccccceEEECCcccc---cccCCCCceEEEEEcC----CCcEEEEecCCCCceEEE
Confidence 23 4443322 134999999999999 9999999999999864 466667777789999999
Q ss_pred EEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC-CeEEEEecC
Q 037368 186 GFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP-EAVYFYEVD 251 (823)
Q Consensus 186 ~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~-~~I~i~~~~ 251 (823)
+|||+| ..|+.+.++ .|.+||+.+. .+...+.+|...+++++||.+|.+++ |+. .+|.+||..
T Consensus 584 ~~Sp~G--r~LaSg~ed~~I~iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 584 AFSPCG--RYLASGDEDGLIKIWDLANG-SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEcCCC--ceEeecccCCcEEEEEcCCC-cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 999999 467777654 5999999764 35555667888889999999888554 444 599999976
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.84 E-value=3.2e-19 Score=179.96 Aligned_cols=268 Identities=12% Similarity=0.130 Sum_probs=193.0
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.|-|++..+ .++++|+.|++|+||| .+|++..++.||-..|..+++++...+|+|||+|++ ||.|||.
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~---------VKCwDLe 223 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ---------VKCWDLE 223 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe---------eEEEech
Confidence 388888754 5899999999999999 889998899999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
..+ .+|... ++- +.|.|++++|.... +++|+.|.++++||.. .+ ....++..+.++|+
T Consensus 224 ~nk----------vIR~Yh--GHl---S~V~~L~lhPTldv---l~t~grDst~RvWDiR---tr-~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 224 YNK----------VIRHYH--GHL---SGVYCLDLHPTLDV---LVTGGRDSTIRVWDIR---TR-ASVHVLSGHTNPVA 281 (460)
T ss_pred hhh----------hHHHhc--ccc---ceeEEEecccccee---EEecCCcceEEEeeec---cc-ceEEEecCCCCcce
Confidence 532 343322 211 33999999999999 9999999999999862 22 12233446789999
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEeeCCeEEEEecCCCCccccccCC
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGRPEAVYFYEVDGRGPCWAFEGE 262 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~~~~I~i~~~~g~~~~~~~~g~ 262 (823)
++.+.+.+. .++..+.+.+|++||+... ....++.+|...+.|++..|.- .|+.++.+.|+.|+.-....+..++|+
T Consensus 282 ~V~~~~~dp-qvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 282 SVMCQPTDP-QVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred eEEeecCCC-ceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccc
Confidence 999987542 3455555778999999753 3556677888889999999855 577788899999997533334567777
Q ss_pred eE---EEEeeC-cEEEEEEecCCCCccEEEEEeCCCCEEEEe-------ccccc----eeEEEeecCcEEEEEcCCeEEE
Q 037368 263 KK---LLGWFR-GYLLCVIADQRNSKNIFNVYDLKNRLIAHS-------LVVKE----VSHMLCEWGNIILVMTDKSVLC 327 (823)
Q Consensus 263 ~~---~i~~~~-~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~-------~~i~~----v~~v~~~~~~~~vvs~~~~v~~ 327 (823)
.. .++.+. +++++++ ..+.+..||...+...+. +.+.+ ....|...+.-++.+-.++.+.
T Consensus 360 ~~iintl~~nsD~v~~~G~-----dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk 434 (460)
T KOG0285|consen 360 NAIINTLSVNSDGVLVSGG-----DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIK 434 (460)
T ss_pred cceeeeeeeccCceEEEcC-----CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceE
Confidence 43 333333 4555554 358999999987654322 22222 2223444555555555555666
Q ss_pred EeecC
Q 037368 328 IGEKD 332 (823)
Q Consensus 328 l~~~~ 332 (823)
+++.+
T Consensus 435 ~~keD 439 (460)
T KOG0285|consen 435 MYKED 439 (460)
T ss_pred EEecc
Confidence 65444
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=197.83 Aligned_cols=269 Identities=14% Similarity=0.202 Sum_probs=187.0
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCe--eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLK--FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~--~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
..|+|+.++ +..++.++.++.+++|+ ..++ ..+...+|...|..++|+|+|.+++|+++|++ ||||
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~t---------iriw 230 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKT---------LRIW 230 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCce---------EEEe
Confidence 457776553 35789999999999999 3455 66777899999999999999999999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
|+.. ...++++++.| ..+ |++++|+|+++. +++|+.||+|++|+.. .+...+.+..+.+
T Consensus 231 d~~~---------~~~~~~~l~gH--~~~---v~~~~f~p~g~~---i~Sgs~D~tvriWd~~----~~~~~~~l~~hs~ 289 (456)
T KOG0266|consen 231 DLKD---------DGRNLKTLKGH--STY---VTSVAFSPDGNL---LVSGSDDGTVRIWDVR----TGECVRKLKGHSD 289 (456)
T ss_pred eccC---------CCeEEEEecCC--CCc---eEEEEecCCCCE---EEEecCCCcEEEEecc----CCeEEEeeeccCC
Confidence 9942 12378888744 334 999999999999 9999999999999863 2344455666788
Q ss_pred CcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCC-cceEEccCC-C-ccceecccCCCeEE-EeeCC-eEEEEecCCCC
Q 037368 181 SVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPP-KRQFLDNIG-C-STNSVAMSDRLELI-IGRPE-AVYFYEVDGRG 254 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~-~~~~l~~~~-~-~~~~~~~s~~~~li-v~~~~-~I~i~~~~g~~ 254 (823)
+|++++|+++|+ .+++++ ++.|++||+.+... +...+..+. . ++.++.|+|++.++ ++..+ .+++|++....
T Consensus 290 ~is~~~f~~d~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 290 GISGLAFSPDGN--LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred ceEEEEECCCCC--EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 999999999994 555555 55699999976431 223443222 2 57899999999865 45555 99999987321
Q ss_pred ccccccCCeE---EE-----EeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEe--cc-ccceeEE-EeecCcEEEEEc-
Q 037368 255 PCWAFEGEKK---LL-----GWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS--LV-VKEVSHM-LCEWGNIILVMT- 321 (823)
Q Consensus 255 ~~~~~~g~~~---~i-----~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~--~~-i~~v~~v-~~~~~~~~vvs~- 321 (823)
....+.++.. .+ ...+.++++.+ .++.|.+||+.++.+... .+ ...+..+ +.....+++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-----~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-----EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF 442 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEe-----CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc
Confidence 1123333321 11 22356777776 468999999997654432 22 2222222 334445555544
Q ss_pred -CCeEEEEeec
Q 037368 322 -DKSVLCIGEK 331 (823)
Q Consensus 322 -~~~v~~l~~~ 331 (823)
.+..+++++.
T Consensus 443 ~~d~~~~~w~~ 453 (456)
T KOG0266|consen 443 EGDGLIRLWKY 453 (456)
T ss_pred CCCceEEEecC
Confidence 3456666644
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.83 E-value=4e-20 Score=189.62 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=173.8
Q ss_pred CCCeEEEee--CCCEEEEEecCCeEEEEcCCCeeeEeEeecc-cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 25 SGNITCCSS--GRGKVVIGCDDGAVSLLDRGLKFNFGFQAHS-SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 25 ~~~is~~~~--~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~-~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
+..|.++.. ++.++++|+.+|.|++|+.+.+.++.+++|. .+|.+++|+|....++|||+||+ |+|||
T Consensus 138 Ds~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~---------ikiWd 208 (464)
T KOG0284|consen 138 DSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT---------IKIWD 208 (464)
T ss_pred cccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCe---------EEEEe
Confidence 334777764 3568999999999999999888888898876 89999999999999999999998 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
..... .-+.++.+ .. .|+|++|||.-.. ||+|+.|..|++||.. .+.....++.++..
T Consensus 209 f~~~k----------ee~vL~GH--gw---dVksvdWHP~kgL---iasgskDnlVKlWDpr----Sg~cl~tlh~HKnt 266 (464)
T KOG0284|consen 209 FRMPK----------EERVLRGH--GW---DVKSVDWHPTKGL---IASGSKDNLVKLWDPR----SGSCLATLHGHKNT 266 (464)
T ss_pred ccCCc----------hhheeccC--CC---CcceeccCCccce---eEEccCCceeEeecCC----Ccchhhhhhhccce
Confidence 98532 22344433 22 3999999999888 9999999999999863 34455556778899
Q ss_pred cceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccC--CCeEEE-eeCCeEEEEecCCCCcc-
Q 037368 182 VMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSD--RLELII-GRPEAVYFYEVDGRGPC- 256 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~--~~~liv-~~~~~I~i~~~~g~~~~- 256 (823)
|+++.|++++ ..|++++.+ .+++||++... -..++.+|...+.+++|.| .+-|.+ |+++.|+.|.+....+.
T Consensus 267 Vl~~~f~~n~--N~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 267 VLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred EEEEEEcCCC--CeeEEccCCceEEEEehhHhH-HHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 9999999998 466666654 69999998432 3455667888999999998 555665 45679999987644333
Q ss_pred ---ccccCCeEEEEeeC--cEEEEEEecCCCCccEEEEEe
Q 037368 257 ---WAFEGEKKLLGWFR--GYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 257 ---~~~~g~~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D 291 (823)
.+.++....++|+. ..|..++ .|.+++.|.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgs-----nd~t~rfw~ 378 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGS-----NDRTVRFWT 378 (464)
T ss_pred CCCcccccceeeeeccccceeEeecC-----CCcceeeec
Confidence 34455566777764 4444444 568999994
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=3.2e-18 Score=187.48 Aligned_cols=231 Identities=13% Similarity=0.165 Sum_probs=172.1
Q ss_pred CCCeEEEeeC--CCEEEEEec-CCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSG--RGKVVIGCD-DGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~--~~~l~~gs~-dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
+.+|..++.. ++.|++|+. -|.+-+|+ .+-.-+-.-+||..+|++++.+|||+++||+++||. ||||
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK---------VKvW 377 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK---------VKVW 377 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc---------EEEE
Confidence 3557666654 679988864 48999999 444444456799999999999999999999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
|..+ ..|..|+.-| + +.|++|.|+..++. +.+.+.||+|+.||.. |.-.-++ +..+.
T Consensus 378 n~~S----------gfC~vTFteH--t---s~Vt~v~f~~~g~~---llssSLDGtVRAwDlk----RYrNfRT-ft~P~ 434 (893)
T KOG0291|consen 378 NTQS----------GFCFVTFTEH--T---SGVTAVQFTARGNV---LLSSSLDGTVRAWDLK----RYRNFRT-FTSPE 434 (893)
T ss_pred eccC----------ceEEEEeccC--C---CceEEEEEEecCCE---EEEeecCCeEEeeeec----ccceeee-ecCCC
Confidence 9873 3588777633 2 34999999999999 9999999999999863 2222233 33456
Q ss_pred Ccc--eEEEeecCCeEEEEEEcCC--eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE--eeCCeEEEEecCCCC
Q 037368 181 SVM--GLGFRVDGQALQLFAVTPN--SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII--GRPEAVYFYEVDGRG 254 (823)
Q Consensus 181 ~It--~l~fs~dg~~~~l~~~t~~--~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv--~~~~~I~i~~~~g~~ 254 (823)
|+. +|+-.|.| .++++++.+ .|.+|++.+. +...++.+|..++.+++|+|+|..++ +||.+|++|++-++.
T Consensus 435 p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 435 PIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred ceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 665 45555556 567777766 4999999763 46778889999999999999998665 478899999986542
Q ss_pred cc-ccccC--Ce--EEEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 255 PC-WAFEG--EK--KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 255 ~~-~~~~g--~~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
.. -.++. .. ..+.|.|..|++.+- +|.|.+||++..
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTl-----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATL-----DGQITFFDIKEA 552 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEe-----cceEEEEEhhhc
Confidence 21 12222 12 245556888888875 489999999754
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=3.5e-17 Score=172.20 Aligned_cols=265 Identities=15% Similarity=0.190 Sum_probs=184.5
Q ss_pred CCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
..|+|++..+ +.+++|+.+|.|++|+ .+++....+.+|...|..+.+.|+++.+++++.|+. |++|++
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~---------i~i~~~ 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT---------IRLWDL 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCe---------EEEEEc
Confidence 4588888765 6889999999999999 566677789999999999999999999999999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
.... .+..+..+ ..+ +.+++|+|++.. +++|+.+|.|.+|+.. .+.....+..+.++|
T Consensus 81 ~~~~----------~~~~~~~~--~~~---i~~~~~~~~~~~---~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i 138 (289)
T cd00200 81 ETGE----------CVRTLTGH--TSY---VSSVAFSPDGRI---LSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWV 138 (289)
T ss_pred Cccc----------ceEEEecc--CCc---EEEEEEcCCCCE---EEEecCCCeEEEEECC----CcEEEEEeccCCCcE
Confidence 8421 23344322 223 999999999777 8888779999999863 111122233456789
Q ss_pred ceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEee-CCeEEEEecCCCCccccc
Q 037368 183 MGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGR-PEAVYFYEVDGRGPCWAF 259 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~-~~~I~i~~~~g~~~~~~~ 259 (823)
+++.|++++ ..+++++ ++.|.+||+... .+...+..+...+.++.|+|++ .++++. ++.|++|+.........+
T Consensus 139 ~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 139 NSVAFSPDG--TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEEEEcCcC--CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 999999986 4677776 677999999743 3455666677788999999988 455554 568999998743222233
Q ss_pred cC---CeEEEEeeC--cEEEEEEecCCCCccEEEEEeCCCCEEEEec--cccceeEE-EeecCcEEEEEcCCeEEEEe
Q 037368 260 EG---EKKLLGWFR--GYLLCVIADQRNSKNIFNVYDLKNRLIAHSL--VVKEVSHM-LCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 260 ~g---~~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~--~i~~v~~v-~~~~~~~~vvs~~~~v~~l~ 329 (823)
.+ ....+.+.. .++++.+ .++.|.+||+......... +-..+..+ +++.+..++.++.+..++++
T Consensus 216 ~~~~~~i~~~~~~~~~~~~~~~~-----~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 216 RGHENGVNSVAFSPDGYLLASGS-----EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred hhcCCceEEEEEcCCCcEEEEEc-----CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 22 344566654 3444443 3589999999864433222 22224443 55555666665554444443
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=1.8e-18 Score=177.40 Aligned_cols=269 Identities=14% Similarity=0.154 Sum_probs=188.9
Q ss_pred CCCe-EEEeeCC-CEEEEEecCCeEEEEc----CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 25 SGNI-TCCSSGR-GKVVIGCDDGAVSLLD----RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 25 ~~~i-s~~~~~~-~~l~~gs~dG~i~~~d----~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
.+.| -|.++++ ++||+||.|.+..+|. ...++.+++.+|..+|..|.|+||..+|++||.|.. ++
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~---------~~ 294 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV---------LS 294 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh---------ee
Confidence 3456 5566654 5899999999999997 235678899999999999999999999999999987 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
+||.++.+ +.+... .+..+ .++|++|.|||.. +++|+.|+++..|+.|- +.. .+.+-+.
T Consensus 295 lwDv~tgd----------~~~~y~-~~~~~---S~~sc~W~pDg~~---~V~Gs~dr~i~~wdlDg-n~~-~~W~gvr-- 353 (519)
T KOG0293|consen 295 LWDVDTGD----------LRHLYP-SGLGF---SVSSCAWCPDGFR---FVTGSPDRTIIMWDLDG-NIL-GNWEGVR-- 353 (519)
T ss_pred eccCCcch----------hhhhcc-cCcCC---CcceeEEccCCce---eEecCCCCcEEEecCCc-chh-hcccccc--
Confidence 99998643 322221 11122 3899999999999 99999999999997541 000 1111111
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe--eCCeEEEEecCCCCcc
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG--RPEAVYFYEVDGRGPC 256 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~--~~~~I~i~~~~g~~~~ 256 (823)
...|..++.++||+ ..+.++.+..|++|+...+..-. .. ....++.+.++|.+|+++.. .+..|.+||.+.+...
T Consensus 354 ~~~v~dlait~Dgk-~vl~v~~d~~i~l~~~e~~~dr~-li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 354 DPKVHDLAITYDGK-YVLLVTVDKKIRLYNREARVDRG-LI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV 430 (519)
T ss_pred cceeEEEEEcCCCc-EEEEEecccceeeechhhhhhhc-cc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH
Confidence 24588999999997 56777778889999987653211 12 22345778889999998764 3568999999865545
Q ss_pred ccccCCeEE---E-EeeC----cEEEEEEecCCCCccEEEEEeCCCC-EEE-EeccccceeEE-EeecC-cEEEEEcCCe
Q 037368 257 WAFEGEKKL---L-GWFR----GYLLCVIADQRNSKNIFNVYDLKNR-LIA-HSLVVKEVSHM-LCEWG-NIILVMTDKS 324 (823)
Q Consensus 257 ~~~~g~~~~---i-~~~~----~ylv~~s~d~~~~~~~I~I~D~~~~-~i~-~~~~i~~v~~v-~~~~~-~~~vvs~~~~ 324 (823)
..+.||+.+ | ++|| .+++++| +|+.|.||+..++ .++ .+++...|..| .++.+ .++..++|+.
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-----ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGS-----EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecC-----CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 567787542 2 3343 4666665 5789999998764 443 45554444433 12222 3777788888
Q ss_pred EEEEeec
Q 037368 325 VLCIGEK 331 (823)
Q Consensus 325 v~~l~~~ 331 (823)
.+|+|-.
T Consensus 506 tIRIWg~ 512 (519)
T KOG0293|consen 506 TIRIWGP 512 (519)
T ss_pred eEEEecC
Confidence 9999743
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.4e-18 Score=163.00 Aligned_cols=258 Identities=14% Similarity=0.130 Sum_probs=186.1
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.|.++-+. +++.++|+.|.+|++|+ ..|.+++++.+|...|..++.+.+...++|||.|.. |.+||+.
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~---------v~vwDV~ 89 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA---------VQVWDVN 89 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCce---------EEEEEcc
Confidence 36566553 57889999999999999 679999999999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce-eEEecCCCCc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF-KLQVDNQCSV 182 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~-~~~~~~~~~I 182 (823)
+. +.+|.++.|. +.|++|+|+.+.+. +++|+-|.+|++|+- |.+..++ +++-+....|
T Consensus 90 TG----------kv~Rr~rgH~-----aqVNtV~fNeesSV---v~SgsfD~s~r~wDC---RS~s~ePiQildea~D~V 148 (307)
T KOG0316|consen 90 TG----------KVDRRFRGHL-----AQVNTVRFNEESSV---VASGSFDSSVRLWDC---RSRSFEPIQILDEAKDGV 148 (307)
T ss_pred cC----------eeeeeccccc-----ceeeEEEecCcceE---EEeccccceeEEEEc---ccCCCCccchhhhhcCce
Confidence 43 3567776442 44999999999999 999999999999984 3333333 3344557789
Q ss_pred ceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe--eCCeEEEEecCCCCcc-ccc
Q 037368 183 MGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG--RPEAVYFYEVDGRGPC-WAF 259 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~--~~~~I~i~~~~g~~~~-~~~ 259 (823)
.++..+.. .++..+.+++++.||++... ..-+..|.+++|++|++|++...+ -++++++.|-+ .|.. ...
T Consensus 149 ~Si~v~~h---eIvaGS~DGtvRtydiR~G~---l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~-tGklL~sY 221 (307)
T KOG0316|consen 149 SSIDVAEH---EIVAGSVDGTVRTYDIRKGT---LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE-TGKLLKSY 221 (307)
T ss_pred eEEEeccc---EEEeeccCCcEEEEEeecce---eehhhcCCcceeEEecCCCCEEEEeeccceeeecccc-hhHHHHHh
Confidence 99887653 35555567789999998532 223456889999999999985543 36789999866 3433 345
Q ss_pred cCCeE-------EEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc---eeEE-EeecCcEEEEEcCCeEE
Q 037368 260 EGEKK-------LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE---VSHM-LCEWGNIILVMTDKSVL 326 (823)
Q Consensus 260 ~g~~~-------~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~---v~~v-~~~~~~~~vvs~~~~v~ 326 (823)
.||+. .+.-...+++.++ +|+.|.+||+.+..+....+..+ +..+ +.+.-.-|+++..+.++
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgS-----EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGS-----EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred cccccceeeeeeeecccceeEEecc-----CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 67642 1222234666666 57999999998877766555444 2222 33444445554444333
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.80 E-value=6.6e-18 Score=191.53 Aligned_cols=230 Identities=15% Similarity=0.211 Sum_probs=167.8
Q ss_pred CeEEEee-CC-CEEEEEecCCeEEEEcC-C-CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 27 NITCCSS-GR-GKVVIGCDDGAVSLLDR-G-LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 27 ~is~~~~-~~-~~l~~gs~dG~i~~~d~-~-~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
.|+++++ ++ .++++|+.|++|++||. . +..++++++|...|++++|+|+|+.++|||.|++ |||||+
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t---------vriWd~ 275 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT---------VRIWDV 275 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCc---------EEEEec
Confidence 3766655 34 48899999999999993 4 5788999999999999999999999999999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc--eeEEecC-C
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR--FKLQVDN-Q 179 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k--~~~~~~~-~ 179 (823)
.. ..|++.+..+. .+ |++++|++|++. +++|+.||.|++|+.. .+.+ ...+... .
T Consensus 276 ~~----------~~~~~~l~~hs--~~---is~~~f~~d~~~---l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~ 333 (456)
T KOG0266|consen 276 RT----------GECVRKLKGHS--DG---ISGLAFSPDGNL---LVSASYDGTIRVWDLE----TGSKLCLKLLSGAEN 333 (456)
T ss_pred cC----------CeEEEeeeccC--Cc---eEEEEECCCCCE---EEEcCCCccEEEEECC----CCceeeeecccCCCC
Confidence 84 24788887653 34 999999999999 9999999999999863 2221 1222222 2
Q ss_pred C-CcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccce---ecccCCCeEEEe-e-CCeEEEEecCC
Q 037368 180 C-SVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNS---VAMSDRLELIIG-R-PEAVYFYEVDG 252 (823)
Q Consensus 180 ~-~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~---~~~s~~~~liv~-~-~~~I~i~~~~g 252 (823)
. +++.+.|+|+|. .+++++.+ .+.+|++.... .......|...+.| ...++++.++++ . +..|++|++..
T Consensus 334 ~~~~~~~~fsp~~~--~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 334 SAPVTSVQFSPNGK--YLLSASLDRTLKLWDLRSGK-SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCceeEEEECCCCc--EEEEecCCCeEEEEEccCCc-ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 2 799999999994 56666655 79999997432 34444444443333 234578887654 3 45899999986
Q ss_pred CCccccccCC-eE---E--EEeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 253 RGPCWAFEGE-KK---L--LGWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 253 ~~~~~~~~g~-~~---~--i~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
......++|| +. . ..+..++++..+.+ .++.+++|...
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~---~d~~~~~w~~~ 454 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFE---GDGLIRLWKYD 454 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCcC---CCceEEEecCC
Confidence 5555566776 32 2 23345666666533 47899999643
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7.1e-16 Score=171.51 Aligned_cols=208 Identities=12% Similarity=0.142 Sum_probs=151.7
Q ss_pred CcCCCC-eEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 22 EEVSGN-ITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 22 ~~~~~~-is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+.++.. |-.++++. ..|+++|.|.+|+||+ .+.+++..+.||..-|.|..|+|..+.++|+|-|.| |
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT---------V 159 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT---------V 159 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce---------E
Confidence 455555 66666665 4799999999999999 889999999999999999999999999999999998 9
Q ss_pred EEEeCCCCCCCCCCCC-----------------CCceE--EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEE
Q 037368 98 KVFDLDKMEPEGTSST-----------------SPDCI--GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIY 158 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~-----------------~~~~~--~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~ 158 (823)
||||+....+..+..+ .+.++ ..+. ++++ .|+-+||+|..-. |++|+.|..|+
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE--GHDR---GVNwaAfhpTlpl---iVSG~DDRqVK 231 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE--GHDR---GVNWAAFHPTLPL---IVSGADDRQVK 231 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec--cccc---ccceEEecCCcce---EEecCCcceee
Confidence 9999986543211111 11121 1122 2222 2999999999889 99999999999
Q ss_pred EEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeE
Q 037368 159 CIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLEL 237 (823)
Q Consensus 159 l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~l 237 (823)
+|+-.- .+.+-..+...+-++|+++-|.|.. ..+.+.+ ++.|++||++.+. ..+++.......++++--|...+
T Consensus 232 lWrmne--tKaWEvDtcrgH~nnVssvlfhp~q--~lIlSnsEDksirVwDm~kRt-~v~tfrrendRFW~laahP~lNL 306 (1202)
T KOG0292|consen 232 LWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQ--DLILSNSEDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPELNL 306 (1202)
T ss_pred EEEecc--ccceeehhhhcccCCcceEEecCcc--ceeEecCCCccEEEEeccccc-ceeeeeccCCeEEEEEecCCcce
Confidence 998531 1222233345667899999999965 3444444 5569999998764 66777655667778888887765
Q ss_pred E-EeeCCeEEEEecC
Q 037368 238 I-IGRPEAVYFYEVD 251 (823)
Q Consensus 238 i-v~~~~~I~i~~~~ 251 (823)
. +|-|+++.+|..+
T Consensus 307 fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 307 FAAGHDSGMIVFKLE 321 (1202)
T ss_pred eeeecCCceEEEEEc
Confidence 4 4556677777655
No 30
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.7e-18 Score=187.87 Aligned_cols=234 Identities=16% Similarity=0.226 Sum_probs=177.9
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.+-.+++++ ..++++-++|.|.+|| +-+.++..|..|.|+|..|+|+|.+.+++|+|+|-+ ||||+..
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk---------IkVWnYk 81 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK---------IKVWNYK 81 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccE---------EEEEecc
Confidence 455667765 4789999999999999 888999999999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
.. +|+-++..|. .+ |.++.||+..-. |.+++.|-+|++|+.. ......++..++.-|.
T Consensus 82 ~r----------rclftL~GHl-DY----VRt~~FHheyPW---IlSASDDQTIrIWNwq----sr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 82 TR----------RCLFTLLGHL-DY----VRTVFFHHEYPW---ILSASDDQTIRIWNWQ----SRKCIAVLTGHNHYVM 139 (1202)
T ss_pred cc----------eehhhhcccc-ce----eEEeeccCCCce---EEEccCCCeEEEEecc----CCceEEEEecCceEEE
Confidence 42 4766665432 22 999999999999 9999999999999753 1223445667788899
Q ss_pred eEEEeecCCeEEEEEEc-CCeEEEEEecCC---C-C------------------------cceEEccCCCccceecccCC
Q 037368 184 GLGFRVDGQALQLFAVT-PNSVILFSLQNQ---P-P------------------------KRQFLDNIGCSTNSVAMSDR 234 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~---~-~------------------------~~~~l~~~~~~~~~~~~s~~ 234 (823)
+-.|.|.. ..+.+++ +.+|++||+.+- . . .+.++++|.-.++.++|-|.
T Consensus 140 cAqFhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 140 CAQFHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred eeccCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 99999965 4566666 557999998651 0 0 23456788888899999998
Q ss_pred CeEEEee-CC-eEEEEecCCCCccc---cccCC---eEEEEeeC--cEEEEEEecCCCCccEEEEEeCCCCEEEE
Q 037368 235 LELIIGR-PE-AVYFYEVDGRGPCW---AFEGE---KKLLGWFR--GYLLCVIADQRNSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 235 ~~liv~~-~~-~I~i~~~~g~~~~~---~~~g~---~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~i~~ 299 (823)
--+++++ || .|++|..+... .+ +..|| .+++-+++ +.+++.+ +|++|+|||+..+.-.+
T Consensus 218 lpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSns-----EDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNS-----EDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecC-----CCccEEEEeccccccee
Confidence 8877754 44 79999876432 22 22344 34555555 5555554 67999999998765443
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.79 E-value=2.4e-17 Score=172.17 Aligned_cols=263 Identities=14% Similarity=0.155 Sum_probs=185.5
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.+|+|..-. +..||+|+.||.+++|+.+|.++.+|..|+++|.++.+...|++++|+|-|++ +.+||..
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t---------tilwd~~ 306 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT---------TILWDAH 306 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc---------EEEEecc
Confidence 458888865 57899999999999999999999999999999999999999999999999998 9999986
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
+. .+.+.+..+ ..| .-.|.|-.+ .. +|+.+.||.|++++.+- ..+. .++..+.++|.
T Consensus 307 ~g----------~~~q~f~~~--s~~---~lDVdW~~~-~~---F~ts~td~~i~V~kv~~---~~P~-~t~~GH~g~V~ 363 (524)
T KOG0273|consen 307 TG----------TVKQQFEFH--SAP---ALDVDWQSN-DE---FATSSTDGCIHVCKVGE---DRPV-KTFIGHHGEVN 363 (524)
T ss_pred Cc----------eEEEeeeec--cCC---ccceEEecC-ce---EeecCCCceEEEEEecC---CCcc-eeeecccCceE
Confidence 42 244444433 222 344566543 35 88889999999998652 2222 33445789999
Q ss_pred eEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCC----------eEEE-eeCCeEEEEecC
Q 037368 184 GLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL----------ELII-GRPEAVYFYEVD 251 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~----------~liv-~~~~~I~i~~~~ 251 (823)
.|.|.|.| .+|+.++++ ++++|+..... ....|..|...+..+.|+|+| .++. +.+++|++|+++
T Consensus 364 alk~n~tg--~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 364 ALKWNPTG--SLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEECCCC--ceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 99999998 577777765 69999975432 334455566666666666522 2343 446799999998
Q ss_pred CCCccccccCC---eEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc-eeEE-EeecCc-EEEEEcCC
Q 037368 252 GRGPCWAFEGE---KKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE-VSHM-LCEWGN-IILVMTDK 323 (823)
Q Consensus 252 g~~~~~~~~g~---~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~-v~~v-~~~~~~-~~vvs~~~ 323 (823)
.-.+..+|..| ...+++ .+.|++.++. ++.|.||+.+.+.+..+..-.. +..+ ++..|+ +.+..+++
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~-----dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL-----DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCC-----CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCC
Confidence 33333566554 344544 5889998884 5899999999887766554333 3333 444454 44445566
Q ss_pred eEEEE
Q 037368 324 SVLCI 328 (823)
Q Consensus 324 ~v~~l 328 (823)
.+..+
T Consensus 516 ~vcvl 520 (524)
T KOG0273|consen 516 SVCVL 520 (524)
T ss_pred CceEE
Confidence 55544
No 32
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=9e-18 Score=167.43 Aligned_cols=229 Identities=15% Similarity=0.213 Sum_probs=168.1
Q ss_pred CCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCC--EEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRN--FLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~--~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
..|+|++.++.++|+|+.|-+|+||| +....+..+-.|++.|+++.|.+... .|+||++||. |.+|+.
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~---------i~iw~~ 114 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH---------IIIWRV 114 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc---------EEEEEc
Confidence 35899999999999999999999999 55556667888999999999988654 8999999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
... .++.+++.+. +.|+-+++||.++. ..+.++|+.+++|+. ++.|... +......-
T Consensus 115 ~~W----------~~~~slK~H~-----~~Vt~lsiHPS~KL---ALsVg~D~~lr~WNL--V~Gr~a~---v~~L~~~a 171 (362)
T KOG0294|consen 115 GSW----------ELLKSLKAHK-----GQVTDLSIHPSGKL---ALSVGGDQVLRTWNL--VRGRVAF---VLNLKNKA 171 (362)
T ss_pred CCe----------EEeeeecccc-----cccceeEecCCCce---EEEEcCCceeeeehh--hcCccce---eeccCCcc
Confidence 854 3777887553 23999999999876 444455999999974 3333322 22223334
Q ss_pred ceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCC-eEEEEecCCCCccccccC
Q 037368 183 MGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPE-AVYFYEVDGRGPCWAFEG 261 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~-~I~i~~~~g~~~~~~~~g 261 (823)
+.|.|+|.| ...+++..++|-+|.++... ....+.. ...+-|+.|-..+.+++|+++ .|.+||.+...+...+.+
T Consensus 172 t~v~w~~~G--d~F~v~~~~~i~i~q~d~A~-v~~~i~~-~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 172 TLVSWSPQG--DHFVVSGRNKIDIYQLDNAS-VFREIEN-PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred eeeEEcCCC--CEEEEEeccEEEEEecccHh-Hhhhhhc-cccceeeeecCCceEEEecCCceEEEeccCCCccceeeec
Confidence 559999988 45666777889999987532 1122221 234568888888999999886 899999885333345556
Q ss_pred Ce---EEEEeeC----cEEEEEEecCCCCccEEEEEeCCCC
Q 037368 262 EK---KLLGWFR----GYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 262 ~~---~~i~~~~----~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
|+ ..+.++. .||++++. ||.|+|||+...
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSS-----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASS-----DGFIKVWDIDME 283 (362)
T ss_pred chhheeeeEEEecCCceEEEEecc-----CceEEEEEcccc
Confidence 63 3455443 48888884 589999998754
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.79 E-value=2e-17 Score=164.03 Aligned_cols=264 Identities=17% Similarity=0.219 Sum_probs=186.0
Q ss_pred eEEEee-CC-CEEEEEecCCeEEEEcCCCee--eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 28 ITCCSS-GR-GKVVIGCDDGAVSLLDRGLKF--NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 28 is~~~~-~~-~~l~~gs~dG~i~~~d~~~~~--~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
|.++.+ ++ ..+++|+.|..|.+|+-.+.+ ....++|++.|..+.+.++++.++|||.|.+ |+.||..
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~---------v~~wD~~ 120 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT---------VRGWDAE 120 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce---------EEEEecc
Confidence 655555 43 478999999999999944433 3456799999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
.. ++++..+.+. .- |++++-+.-| .. +.+|+.||+++|||. |.+.. .+ .++.+-++
T Consensus 121 tG----------~~~rk~k~h~--~~---vNs~~p~rrg~~l---v~SgsdD~t~kl~D~---R~k~~-~~-t~~~kyql 177 (338)
T KOG0265|consen 121 TG----------KRIRKHKGHT--SF---VNSLDPSRRGPQL---VCSGSDDGTLKLWDI---RKKEA-IK-TFENKYQL 177 (338)
T ss_pred cc----------eeeehhcccc--ce---eeecCccccCCeE---EEecCCCceEEEEee---cccch-hh-ccccceeE
Confidence 43 3555555432 11 6666643333 24 889999999999986 22211 11 23456789
Q ss_pred ceEEEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEEEecCCCC---cc
Q 037368 183 MGLGFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRG---PC 256 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~---~~ 256 (823)
|++.|...+ ..++++ -++.|++||+... ....++.+|..++..+..+|+|.++.+. +.++++|+++--- +|
T Consensus 178 tAv~f~d~s--~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 178 TAVGFKDTS--DQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred EEEEecccc--cceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 999998877 344444 4677999999743 4678899999999999999999988765 4689999986321 22
Q ss_pred -ccccCC-------eEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEEEE--eccccceeEE-EeecCcEEEEEcCC
Q 037368 257 -WAFEGE-------KKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLIAH--SLVVKEVSHM-LCEWGNIILVMTDK 323 (823)
Q Consensus 257 -~~~~g~-------~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~--~~~i~~v~~v-~~~~~~~~vvs~~~ 323 (823)
..+.|+ ....+| .+.++-.++ .+..+.+||...+-+.| .++..+|..+ |.+...++..++.+
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags-----~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-----ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCcccccc-----ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 234443 122233 455666666 45899999999876665 3455555555 78888888877666
Q ss_pred eEEEEeec
Q 037368 324 SVLCIGEK 331 (823)
Q Consensus 324 ~v~~l~~~ 331 (823)
+.+-|-|.
T Consensus 330 k~i~lgei 337 (338)
T KOG0265|consen 330 KTIYLGEI 337 (338)
T ss_pred ceeEeecc
Confidence 55555543
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.79 E-value=5.1e-19 Score=177.58 Aligned_cols=227 Identities=16% Similarity=0.233 Sum_probs=171.5
Q ss_pred CCCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 25 SGNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
...|-|.-..++.+++|..|.+|++|| .+..+.+.+.||+|+|.|+.+ +...++|+|.|.| |+|||..
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsT---------vrvWDv~ 265 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDST---------VRVWDVN 265 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCce---------EEEEecc
Confidence 345888888999999999999999999 556788889999999999999 4569999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
+. . ++.++-.+ . ..|.-+.|+.+ . +++.+.|.++.+|+.+-.++ ....+++..+-..|.
T Consensus 266 tg--------e--~l~tlihH--c---eaVLhlrf~ng--~---mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 266 TG--------E--PLNTLIHH--C---EAVLHLRFSNG--Y---MVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVN 324 (499)
T ss_pred CC--------c--hhhHHhhh--c---ceeEEEEEeCC--E---EEEecCCceeEEEeccCchH-HHHHHHHhhhhhhee
Confidence 43 2 44443211 1 22888888875 7 89999999999998642111 112234556678899
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEEEecCCCCccc-ccc
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPCW-AFE 260 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~~-~~~ 260 (823)
.+.|+.. +++.++.+.+|++|++++- ...+++.+|.-.+-|+. ..|+|+|++ |.+|++|+++ .|.|+ .++
T Consensus 325 vVdfd~k---yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi~-~G~cLRvLe 397 (499)
T KOG0281|consen 325 VVDFDDK---YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIE-CGACLRVLE 397 (499)
T ss_pred eeccccc---eEEEecCCceEEEEeccce-eeehhhhcccccceehh--ccCeEEEecCCCceEEEEecc-ccHHHHHHh
Confidence 9999753 4555555667999999753 46677766665555544 588888854 4599999998 67775 678
Q ss_pred CC---eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 261 GE---KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 261 g~---~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
|| ...+.++...+|++.. ||+|+|||+...
T Consensus 398 GHEeLvRciRFd~krIVSGaY-----DGkikvWdl~aa 430 (499)
T KOG0281|consen 398 GHEELVRCIRFDNKRIVSGAY-----DGKIKVWDLQAA 430 (499)
T ss_pred chHHhhhheeecCceeeeccc-----cceEEEEecccc
Confidence 88 4678888888888874 589999999753
No 35
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-17 Score=164.92 Aligned_cols=231 Identities=13% Similarity=0.183 Sum_probs=168.1
Q ss_pred CCeEEEeeCCCEEEEEec--CCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSGRGKVVIGCD--DGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~~~~l~~gs~--dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
....|.+.++..++-+|. |-+|+.++ .+.+.+|.|.||...|+.|+.+|.++.++|+|.|++ |++||+
T Consensus 59 ~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t---------vrLWDl 129 (311)
T KOG1446|consen 59 VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT---------VRLWDL 129 (311)
T ss_pred ccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe---------EEeeEe
Confidence 445566666677777765 88999999 788999999999999999999999999999999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--CCC
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD--NQC 180 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~--~~~ 180 (823)
+. +.|...+... . -..+||+|.|-. +|+|...+.|.||+... .++++....... ...
T Consensus 130 R~----------~~cqg~l~~~--~-----~pi~AfDp~GLi---fA~~~~~~~IkLyD~Rs-~dkgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 130 RV----------KKCQGLLNLS--G-----RPIAAFDPEGLI---FALANGSELIKLYDLRS-FDKGPFTTFSITDNDEA 188 (311)
T ss_pred cC----------CCCceEEecC--C-----CcceeECCCCcE---EEEecCCCeEEEEEecc-cCCCCceeEccCCCCcc
Confidence 83 3465555532 1 356799999999 99999888999998632 234554444332 356
Q ss_pred CcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccC---CCccceecccCCCeEEEeeC--CeEEEEecCCCCc
Q 037368 181 SVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNI---GCSTNSVAMSDRLELIIGRP--EAVYFYEVDGRGP 255 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~---~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~~~ 255 (823)
..+.|.||+||+ .+|..++.+.+.+.|--. +..+..+..+ +...-..+|+||++|+.+++ +.|.+|+.+...+
T Consensus 189 ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 189 EWTDLEFSPDGK-SILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred ceeeeEEcCCCC-EEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 799999999997 566666666688888543 2344555422 22223568999999987553 5899999974333
Q ss_pred cccccC----CeEEEEeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 256 CWAFEG----EKKLLGWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 256 ~~~~~g----~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
...+.| +...+.|...|.+.++.+ ..+..|=+.
T Consensus 267 v~~~~~~~~~~~~~~~fnP~~~mf~sa~-----s~l~fw~p~ 303 (311)
T KOG1446|consen 267 VAVLRGPNGGPVSCVRFNPRYAMFVSAS-----SNLVFWLPD 303 (311)
T ss_pred eeEecCCCCCCccccccCCceeeeeecC-----ceEEEEecc
Confidence 344544 355677778888888753 678888554
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.79 E-value=1.3e-16 Score=157.67 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=179.7
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
.+|.|+-.+ ..+|+++|.||.+.+|| .+.+..+.+.--+.-|..++++|+|+++|++|.|+. ..||++
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~---------Csiy~l 126 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNK---------CSIYPL 126 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCce---------eEEEec
Confidence 458887764 46899999999999999 555556677777889999999999999999999997 889999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
...++ .+.....+.+..|. +-+.|+.|-+|+ . |.+|++|.+..+|+.. .+.+.+.+..+.+.|
T Consensus 127 s~~d~----~g~~~v~r~l~gHt-----gylScC~f~dD~-~---ilT~SGD~TCalWDie----~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 127 STRDA----EGNVRVSRELAGHT-----GYLSCCRFLDDN-H---ILTGSGDMTCALWDIE----TGQQTQVFHGHTGDV 189 (343)
T ss_pred ccccc----cccceeeeeecCcc-----ceeEEEEEcCCC-c---eEecCCCceEEEEEcc----cceEEEEecCCcccE
Confidence 85532 11211233344221 238999998874 6 8999999999999974 555666677788999
Q ss_pred ceEEEee-cCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeCC-eEEEEecCCCCccccc
Q 037368 183 MGLGFRV-DGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRPE-AVYFYEVDGRGPCWAF 259 (823)
Q Consensus 183 t~l~fs~-dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~~-~I~i~~~~g~~~~~~~ 259 (823)
.+|+++| +++ .++..+++...++||++.. ...+.|.+|...++.+.|-|+|. |++|+++ +.++||++.......+
T Consensus 190 ~slsl~p~~~n-tFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 190 MSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred EEEecCCCCCC-eEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 9999999 664 4566667788999999864 57899999999999999999987 7788876 7899999743332233
Q ss_pred cCC-----eEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 260 EGE-----KKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 260 ~g~-----~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
+.+ ...+.+ .|.+|.++. .+.++.|||.-.+.+
T Consensus 268 s~~~~~~gitSv~FS~SGRlLfagy-----~d~~c~vWDtlk~e~ 307 (343)
T KOG0286|consen 268 SHDSIICGITSVAFSKSGRLLFAGY-----DDFTCNVWDTLKGER 307 (343)
T ss_pred ccCcccCCceeEEEcccccEEEeee-----cCCceeEeeccccce
Confidence 322 223333 567777765 458999999865443
No 37
>PTZ00420 coronin; Provisional
Probab=99.78 E-value=1e-16 Score=182.21 Aligned_cols=226 Identities=12% Similarity=0.049 Sum_probs=148.3
Q ss_pred EecCCeEEEEc-CCCeeeEeEeecccceeEEEEecC-CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceE
Q 037368 41 GCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCI 118 (823)
Q Consensus 41 gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~ 118 (823)
|+.+|.|++|+ .....+..+++|.++|.+++|+|+ +++|||||.|++ |+|||+............ ++
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt---------IrIWDi~t~~~~~~~i~~--p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT---------IRVWEIPHNDESVKEIKD--PQ 118 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe---------EEEEECCCCCcccccccc--ce
Confidence 56788999998 344567789999999999999996 789999999998 999999742100000001 22
Q ss_pred EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEE
Q 037368 119 GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFA 198 (823)
Q Consensus 119 ~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~ 198 (823)
.++..| ..+ |++++|+|++.. .+|+|+.||+|++|+.. .+.... ...+..+|++++|+++|. .+++
T Consensus 119 ~~L~gH--~~~---V~sVaf~P~g~~--iLaSgS~DgtIrIWDl~----tg~~~~-~i~~~~~V~SlswspdG~--lLat 184 (568)
T PTZ00420 119 CILKGH--KKK---ISIIDWNPMNYY--IMCSSGFDSFVNIWDIE----NEKRAF-QINMPKKLSSLKWNIKGN--LLSG 184 (568)
T ss_pred EEeecC--CCc---EEEEEECCCCCe--EEEEEeCCCeEEEEECC----CCcEEE-EEecCCcEEEEEECCCCC--EEEE
Confidence 334322 233 999999998865 04788999999999863 121111 223467899999999994 5665
Q ss_pred Ec-CCeEEEEEecCCCCcceEEccCCCccc-----eecccCCCe-EEEee-CC----eEEEEecCCCCccc---cccCCe
Q 037368 199 VT-PNSVILFSLQNQPPKRQFLDNIGCSTN-----SVAMSDRLE-LIIGR-PE----AVYFYEVDGRGPCW---AFEGEK 263 (823)
Q Consensus 199 ~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~-----~~~~s~~~~-liv~~-~~----~I~i~~~~g~~~~~---~~~g~~ 263 (823)
++ ++.|++||++.. .....+..|...+. +..|++++. +++++ ++ .|++|+++..+.+. .++...
T Consensus 185 ~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~ 263 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNAS 263 (568)
T ss_pred EecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCc
Confidence 55 567999999864 34455666654332 223456665 45443 32 69999988433222 222322
Q ss_pred EEEEe--e---CcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 264 KLLGW--F---RGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 264 ~~i~~--~---~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
..+.+ + +.++++++ .|++|++|++..+.+
T Consensus 264 ~~L~p~~D~~tg~l~lsGk-----GD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 264 APLIPHYDESTGLIYLIGK-----GDGNCRYYQHSLGSI 297 (568)
T ss_pred cceEEeeeCCCCCEEEEEE-----CCCeEEEEEccCCcE
Confidence 23322 2 44666665 468999999976654
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.78 E-value=8.2e-18 Score=166.76 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=160.0
Q ss_pred CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
+.+.|++++.|.+|+.|| .+|+.++.+++|..-|+.+....-| .++.|+|+|+| +||||..+.+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t---------~kl~D~R~k~----- 166 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT---------LKLWDIRKKE----- 166 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCce---------EEEEeecccc-----
Confidence 346899999999999999 8899999999999999999866555 55678999998 9999998643
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecC
Q 037368 112 STSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 112 ~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg 191 (823)
+++++ ..+++ +++|+|..++.. +.+|+-|+.|++|+.. ++.-..++..+..+||+|+.+++|
T Consensus 167 -----~~~t~---~~kyq---ltAv~f~d~s~q---v~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 167 -----AIKTF---ENKYQ---LTAVGFKDTSDQ---VISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred -----hhhcc---cccee---EEEEEecccccc---eeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCC
Confidence 34443 22345 999999999999 9999999999999862 122233445668999999999998
Q ss_pred CeEEEEEEcCCeEEEEEecCCC---CcceEEccC--CC--ccceecccCCCeEEEee--CCeEEEEecCCCCccccccCC
Q 037368 192 QALQLFAVTPNSVILFSLQNQP---PKRQFLDNI--GC--STNSVAMSDRLELIIGR--PEAVYFYEVDGRGPCWAFEGE 262 (823)
Q Consensus 192 ~~~~l~~~t~~~V~~~d~~~~~---~~~~~l~~~--~~--~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~~~~~g~ 262 (823)
. ..+.-+-++.+++||++... .+..++.++ +- ..-.++|+|++..+.++ +..+++|+..+++..+.++||
T Consensus 229 s-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh 307 (338)
T KOG0265|consen 229 S-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH 307 (338)
T ss_pred C-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence 5 44555567889999997643 234455433 22 22356899999988643 458999999988877899998
Q ss_pred e-----EEEEeeCcEEEEEEec
Q 037368 263 K-----KLLGWFRGYLLCVIAD 279 (823)
Q Consensus 263 ~-----~~i~~~~~ylv~~s~d 279 (823)
- ..+.+..+.+++++.|
T Consensus 308 ~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 308 YGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred ceeEEEeeecCCCcEEEEeccC
Confidence 3 2344455677766643
No 39
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=9e-18 Score=187.65 Aligned_cols=197 Identities=11% Similarity=0.149 Sum_probs=140.2
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
++.|+||.+-|..|.|+. .++|+|.|.|.| ||+|++... .|++++... .+ ||||
T Consensus 362 ~~ef~GHt~DILDlSWSK-n~fLLSSSMDKT---------VRLWh~~~~----------~CL~~F~Hn--df----VTcV 415 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSK-NNFLLSSSMDKT---------VRLWHPGRK----------ECLKVFSHN--DF----VTCV 415 (712)
T ss_pred hhhhhccchhheeccccc-CCeeEecccccc---------EEeecCCCc----------ceeeEEecC--Ce----eEEE
Confidence 457889999999999975 579999999999 999999853 388877532 23 9999
Q ss_pred EEec-CCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCc
Q 037368 137 LVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPK 215 (823)
Q Consensus 137 a~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~ 215 (823)
+|+| |-++ +++|+-||+|+||... ..+...+.+..+-||++.|+|||+ ..++.+-.+.+++|++.+....
T Consensus 416 aFnPvDDry---FiSGSLD~KvRiWsI~-----d~~Vv~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 416 AFNPVDDRY---FISGSLDGKVRLWSIS-----DKKVVDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred EecccCCCc---EeecccccceEEeecC-----cCeeEeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEE
Confidence 9999 6678 9999999999999862 223333345578899999999996 4445445666999998764311
Q ss_pred --ceEEcc-----CCCccceecccC--CCeEEE-eeCCeEEEEecCCCCccccccCC-------eEEEEeeCcEEEEEEe
Q 037368 216 --RQFLDN-----IGCSTNSVAMSD--RLELII-GRPEAVYFYEVDGRGPCWAFEGE-------KKLLGWFRGYLLCVIA 278 (823)
Q Consensus 216 --~~~l~~-----~~~~~~~~~~s~--~~~liv-~~~~~I~i~~~~g~~~~~~~~g~-------~~~i~~~~~ylv~~s~ 278 (823)
.++... .+..++.+.+.| ..+++| +.|..|+||+.+.+.....|.|. ...+..+|.|||+++
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s- 565 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS- 565 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-
Confidence 111110 122455444443 224555 45568999998655555566653 234666899999998
Q ss_pred cCCCCccEEEEEeCC
Q 037368 279 DQRNSKNIFNVYDLK 293 (823)
Q Consensus 279 d~~~~~~~I~I~D~~ 293 (823)
+|..|.||+.+
T Consensus 566 ----eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 ----EDSWVYIWKND 576 (712)
T ss_pred ----cCceEEEEeCC
Confidence 46899999874
No 40
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.4e-17 Score=175.01 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=190.9
Q ss_pred CceeecccccccCCCCCCCCcCCCCeEEEeeCCC---EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCE
Q 037368 3 QWRKFDFFEEKYGGKSTIPEEVSGNITCCSSGRG---KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNF 78 (823)
Q Consensus 3 ~w~~f~ff~~~~~~~~~~~~~~~~~is~~~~~~~---~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~ 78 (823)
.|+||+|=... ..+..|+++++++. .+|+. ++-.|.+|+ .+-...++|.-+...|.+++|-.||.+
T Consensus 13 ~w~~~~~~~~~---------ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 13 YWRQETFPPVH---------KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred hhhhhcccccc---------cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeE
Confidence 47887765421 22567888888762 34333 245689999 445566778888899999999999999
Q ss_pred EEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEE
Q 037368 79 LVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIY 158 (823)
Q Consensus 79 l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~ 158 (823)
||.|.+.|. |+|+|+.+. ..++.++. +++| +..+-|+|+... .+++|+.|+.++
T Consensus 83 laaGD~sG~---------V~vfD~k~r----------~iLR~~~a--h~ap---v~~~~f~~~d~t--~l~s~sDd~v~k 136 (487)
T KOG0310|consen 83 LAAGDESGH---------VKVFDMKSR----------VILRQLYA--HQAP---VHVTKFSPQDNT--MLVSGSDDKVVK 136 (487)
T ss_pred EEccCCcCc---------EEEeccccH----------HHHHHHhh--ccCc---eeEEEecccCCe--EEEecCCCceEE
Confidence 998888886 999996531 14555553 3678 999999997654 277888778888
Q ss_pred EEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe-
Q 037368 159 CIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE- 236 (823)
Q Consensus 159 l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~- 236 (823)
+|+.+ ...-+..+..++.-|.+.+|+|-.. +++++++ |+.|++||++........+ +||+++..+.+-|.|.
T Consensus 137 ~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 137 YWDLS----TAYVQAELSGHTDYVRCGDISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSL 210 (487)
T ss_pred EEEcC----CcEEEEEecCCcceeEeeccccCCC-eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCE
Confidence 88864 1111112345678899999998653 4566665 5679999998764333334 6999999988888765
Q ss_pred EEEeeCCeEEEEecCCCCccc-cccCC---eEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc-eeEE
Q 037368 237 LIIGRPEAVYFYEVDGRGPCW-AFEGE---KKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE-VSHM 309 (823)
Q Consensus 237 liv~~~~~I~i~~~~g~~~~~-~~~g~---~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~-v~~v 309 (823)
++.++++.|++||+.+.+... ....| .+++.. .+..|++++- |+.|+|||..+-.+.++-.++. +..+
T Consensus 211 iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL-----D~~VKVfd~t~~Kvv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 211 IASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL-----DRHVKVFDTTNYKVVHSWKYPGPVLSI 285 (487)
T ss_pred EEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc-----ccceEEEEccceEEEEeeecccceeeE
Confidence 556777899999987333322 22224 234433 4467887774 5899999988777777777766 5554
Q ss_pred -EeecCcEEEEEcCCeEEEEe
Q 037368 310 -LCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 310 -~~~~~~~~vvs~~~~v~~l~ 329 (823)
.+++++..+++..+.+..+.
T Consensus 286 avs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EecCCCceEEEecccceeeee
Confidence 66677777775544444443
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.77 E-value=1e-16 Score=195.11 Aligned_cols=230 Identities=14% Similarity=0.172 Sum_probs=165.6
Q ss_pred CCCeEEEeeC---CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEE
Q 037368 25 SGNITCCSSG---RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 25 ~~~is~~~~~---~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
...|++++.. ...|++|+.||+|++|| .+++.+..+++|.+.|++++|+| ++++|+|+|.|++ |++
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~---------v~i 602 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS---------VKL 602 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE---------EEE
Confidence 3456666653 46899999999999999 77888889999999999999996 7899999999998 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEe-cCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL-EEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~-~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
||+... .++.++... .+ +.+++|+ +++.. +|+|+.||.|++|+.. ........+..+
T Consensus 603 Wd~~~~----------~~~~~~~~~---~~---v~~v~~~~~~g~~---latgs~dg~I~iwD~~---~~~~~~~~~~~h 660 (793)
T PLN00181 603 WSINQG----------VSIGTIKTK---AN---ICCVQFPSESGRS---LAFGSADHKVYYYDLR---NPKLPLCTMIGH 660 (793)
T ss_pred EECCCC----------cEEEEEecC---CC---eEEEEEeCCCCCE---EEEEeCCCeEEEEECC---CCCccceEecCC
Confidence 999742 255555421 23 8999995 57888 9999999999999863 111122334456
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCC-----CCcceEEccCCCccceecccCCCeEEE-ee-CCeEEEEecC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQ-----PPKRQFLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVD 251 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~-----~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~ 251 (823)
..+|+++.|.+ +. .++.++.++.|++||+... ..+...+.+|...+++++|+|++.+++ |+ ++.|++|+..
T Consensus 661 ~~~V~~v~f~~-~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 661 SKTVSYVRFVD-SS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCEEEEEEeC-CC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 78999999974 42 4445555678999998632 124566778888888999999887654 44 4689999865
Q ss_pred CCCccc--c-----------ccCC---eEEEEee--CcEEEEEEecCCCCccEEEEEeC
Q 037368 252 GRGPCW--A-----------FEGE---KKLLGWF--RGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 252 g~~~~~--~-----------~~g~---~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
...+.. . ...+ ...+.|. +.++++++ .+++|+|||+
T Consensus 739 ~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~-----~dG~I~i~~~ 792 (793)
T PLN00181 739 FPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN-----STGNIKILEM 792 (793)
T ss_pred CCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec-----CCCcEEEEec
Confidence 322111 1 1111 3455564 45777776 4589999986
No 42
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=5.2e-18 Score=171.73 Aligned_cols=282 Identities=15% Similarity=0.186 Sum_probs=196.8
Q ss_pred CCCeEEEeeCCCE---EEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSGRGK---VVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~~~~---l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
.+.|+|++-+++. +++|+.||.|++|| .+-+++++|++|.|.|..|+++. ..++|||+|.| ||.|
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt---------vK~w 134 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKT---------VKQW 134 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcc---------eeee
Confidence 4569999988764 69999999999999 77788999999999999999965 78999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
.++. | .++++- .+ +.+..+.-+..++. +|++ +-.|.||+.. ++ .+. +.+.-+-.
T Consensus 135 k~~~----------~-p~~til-g~-----s~~~gIdh~~~~~~---FaTc--Ge~i~IWD~~--R~-~Pv-~smswG~D 188 (433)
T KOG0268|consen 135 KIDG----------P-PLHTIL-GK-----SVYLGIDHHRKNSV---FATC--GEQIDIWDEQ--RD-NPV-SSMSWGAD 188 (433)
T ss_pred eccC----------C-cceeee-cc-----cccccccccccccc---cccc--Cceeeecccc--cC-Ccc-ceeecCCC
Confidence 9873 2 244442 11 22566666666666 7765 4578899863 22 122 22223456
Q ss_pred CcceEEEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeCC-eEEEEecCCC-Ccc
Q 037368 181 SVMGLGFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRPE-AVYFYEVDGR-GPC 256 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~~-~I~i~~~~g~-~~~ 256 (823)
.|.++.|+|... .+|.++ ++.+|.+||++......++. .+...+.+||+|.+. |++|..| .++.||++-- .+.
T Consensus 189 ti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 189 SISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ceeEEecCCCcc-hheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhcccc
Confidence 799999999875 355555 67789999998755444443 234457889999665 6666655 8999987621 223
Q ss_pred ccccCCeE-----EEEeeCcEEEEEEecCCCCccEEEEEeCCC---CEEEEeccccceeEE-EeecCcEEEEEcCCeEEE
Q 037368 257 WAFEGEKK-----LLGWFRGYLLCVIADQRNSKNIFNVYDLKN---RLIAHSLVVKEVSHM-LCEWGNIILVMTDKSVLC 327 (823)
Q Consensus 257 ~~~~g~~~-----~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~---~~i~~~~~i~~v~~v-~~~~~~~~vvs~~~~v~~ 327 (823)
..+.+|.. .+++.|.-+|++|. |.+|+||.... +.+-|+..++.|..+ ++.++.+++.++|..=+|
T Consensus 266 ~v~~dhvsAV~dVdfsptG~Efvsgsy-----DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSY-----DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccc-----cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCccee
Confidence 34555532 24556778888874 58999998864 446677777777776 555666666667777788
Q ss_pred EeecChHHHHHHHHHh----ccHHHHHH
Q 037368 328 IGEKDMESKLDMLFKK----NLYTVAIN 351 (823)
Q Consensus 328 l~~~~~~~~i~~L~~~----~~f~~Al~ 351 (823)
||.-...+++..+..+ -.|.+||+
T Consensus 341 lWka~Aseklgv~t~rEk~~~~Y~e~Lk 368 (433)
T KOG0268|consen 341 LWKAKASEKLGVITPREKNKLEYNEALK 368 (433)
T ss_pred eeecchhhhcCCCChhHHHHHHHHHHHH
Confidence 9877777777666643 34555554
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=9.8e-17 Score=172.43 Aligned_cols=231 Identities=16% Similarity=0.223 Sum_probs=180.5
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
.+.|-|+-.++ ..++.+=.+|.|.||| .+..++++|.--.-+|....|.+..++++++|+|+. |||++
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~---------IrVfn 83 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQ---------IRVFN 83 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCce---------EEEEe
Confidence 46799999887 4778888999999999 667789999999999999999999999999999998 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQC 180 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~ 180 (823)
..+.+ -+.++..|+ .-|.|+++||..-. +.+++.|-+|++|+-+ ..+.....+ .++.
T Consensus 84 ynt~e----------kV~~FeAH~-----DyIR~iavHPt~P~---vLtsSDDm~iKlW~we----~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 84 YNTGE----------KVKTFEAHS-----DYIRSIAVHPTLPY---VLTSSDDMTIKLWDWE----NEWACEQTFEGHEH 141 (794)
T ss_pred cccce----------eeEEeeccc-----cceeeeeecCCCCe---EEecCCccEEEEeecc----CceeeeeEEcCcce
Confidence 98643 355555442 23999999999888 9999999999999864 344444445 4577
Q ss_pred CcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCC---eEEEeeCC-eEEEEecCCCCc
Q 037368 181 SVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL---ELIIGRPE-AVYFYEVDGRGP 255 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~---~liv~~~~-~I~i~~~~g~~~ 255 (823)
-|..++|.|.... ..++++ +.+|++|.+.. ..+..+|++|...++|+.+-+.| .+++|.|| +|++||-..+ .
T Consensus 142 yVMqv~fnPkD~n-tFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 142 YVMQVAFNPKDPN-TFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred EEEEEEecCCCcc-ceeeeeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 8999999998753 344444 66799999965 34778899999999999998766 57778777 8999998743 4
Q ss_pred c-ccccCCeE---EEEeeCc--EEEEEEecCCCCccEEEEEeCCC
Q 037368 256 C-WAFEGEKK---LLGWFRG--YLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 256 ~-~~~~g~~~---~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
| .+++||.. .+.++.. .+++++ +|+|++||.-.+
T Consensus 219 CV~TLeGHt~Nvs~v~fhp~lpiiisgs-----EDGTvriWhs~T 258 (794)
T KOG0276|consen 219 CVQTLEGHTNNVSFVFFHPELPIIISGS-----EDGTVRIWNSKT 258 (794)
T ss_pred HHHHhhcccccceEEEecCCCcEEEEec-----CCccEEEecCcc
Confidence 5 57899843 3344443 444444 679999997654
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.8e-16 Score=151.23 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=186.8
Q ss_pred CeEEEeeCCC---EEEEEecCCeEEEEcCC----CeeeEeE-eecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 27 NITCCSSGRG---KVVIGCDDGAVSLLDRG----LKFNFGF-QAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 27 ~is~~~~~~~---~l~~gs~dG~i~~~d~~----~~~~~~~-~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
.+-.++.+++ .|++|+.|..|++|+.+ ..+...+ .+|+..|.+++++|.|++||++|-|.| +-
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---------~~ 86 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---------VV 86 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---------EE
Confidence 4656666655 68999999999999944 3333233 369999999999999999999999998 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
||.=.. +...|+.++..+ +.+|.||||+++|++ +|+.+.|.+|=+|..+- -+--....++.++
T Consensus 87 Iw~k~~--------~efecv~~lEGH-----EnEVK~Vaws~sG~~---LATCSRDKSVWiWe~de-ddEfec~aVL~~H 149 (312)
T KOG0645|consen 87 IWKKED--------GEFECVATLEGH-----ENEVKCVAWSASGNY---LATCSRDKSVWIWEIDE-DDEFECIAVLQEH 149 (312)
T ss_pred EeecCC--------CceeEEeeeecc-----ccceeEEEEcCCCCE---EEEeeCCCeEEEEEecC-CCcEEEEeeeccc
Confidence 997542 345688888743 356999999999999 99999999999998641 0001233445667
Q ss_pred CCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCC--CcceEEccCCCccceecccCCC-eEEEeeCC-eEEEEecCCC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQP--PKRQFLDNIGCSTNSVAMSDRL-ELIIGRPE-AVYFYEVDGR 253 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~--~~~~~l~~~~~~~~~~~~s~~~-~liv~~~~-~I~i~~~~g~ 253 (823)
...|..+.|.|.. .+|+.++ +++|++|.-.... .+.+++++|...+.|+.|.+.| +++.+.++ +|++|.....
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 8889999999975 4677765 6789999876322 4678888888899999999988 56666665 8999974311
Q ss_pred CccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCC------------EEEEeccccceeEE-Eee-cCcEEEE
Q 037368 254 GPCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR------------LIAHSLVVKEVSHM-LCE-WGNIILV 319 (823)
Q Consensus 254 ~~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~------------~i~~~~~i~~v~~v-~~~-~~~~~vv 319 (823)
......+....++|...-|+++. .+..|+++.-... .-+|... |..+ ..+ ..+.++.
T Consensus 228 -~~~~~sr~~Y~v~W~~~~IaS~g-----gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---VNsV~w~p~~~~~L~s 298 (312)
T KOG0645|consen 228 -LSGMHSRALYDVPWDNGVIASGG-----GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---VNSVQWNPKVSNRLAS 298 (312)
T ss_pred -cchhcccceEeeeecccceEecc-----CCCEEEEEEecCCCCCchHHHHHhhhcccccc---cceEEEcCCCCCceee
Confidence 11112233455777744555555 4578888844321 1122222 3333 333 2456777
Q ss_pred EcCCeEEEEeec
Q 037368 320 MTDKSVLCIGEK 331 (823)
Q Consensus 320 s~~~~v~~l~~~ 331 (823)
++++.++++++.
T Consensus 299 ~~DDG~v~~W~l 310 (312)
T KOG0645|consen 299 GGDDGIVNFWEL 310 (312)
T ss_pred cCCCceEEEEEe
Confidence 777778887754
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.76 E-value=8.3e-18 Score=176.39 Aligned_cols=227 Identities=13% Similarity=0.078 Sum_probs=170.2
Q ss_pred eEEEeeCC---CEEEEEecCCeEEEEc--CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 28 ITCCSSGR---GKVVIGCDDGAVSLLD--RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 28 is~~~~~~---~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
|+|+-.-+ ..|++|+.||.|+||+ .+++++++|.+|..+|..++|+.+|..+.|+|-|+. ||+||+
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~---------lKlwDt 287 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF---------LKLWDT 287 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee---------eeeecc
Confidence 66665433 3568999999999999 568999999999999999999999999999999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEe---cC
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQV---DN 178 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~---~~ 178 (823)
++ .+|+..+.. ..+ ++||.|+||+ +. +.+|+.||.|+.||. |..+ ++. .+
T Consensus 288 ET----------G~~~~~f~~---~~~---~~cvkf~pd~~n~---fl~G~sd~ki~~wDi-----Rs~k--vvqeYd~h 341 (503)
T KOG0282|consen 288 ET----------GQVLSRFHL---DKV---PTCVKFHPDNQNI---FLVGGSDKKIRQWDI-----RSGK--VVQEYDRH 341 (503)
T ss_pred cc----------ceEEEEEec---CCC---ceeeecCCCCCcE---EEEecCCCcEEEEec-----cchH--HHHHHHhh
Confidence 84 347666553 344 8999999998 66 999999999999986 2222 222 23
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEEEecCCCCcc
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPC 256 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~ 256 (823)
-++|..+.|.++|. .++.++.++.+++|+...........+..-....|++..|++.+.++. ++.|.++.+.-+-+.
T Consensus 342 Lg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 342 LGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 57899999999985 455555566799999865433333333333455788888988877764 468999886533221
Q ss_pred ---ccccCCe-------EEEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 257 ---WAFEGEK-------KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 257 ---~~~~g~~-------~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
..|+||. ..++++|.||+.+.. +|.+.+||.++-
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGds-----dG~v~~wdwkt~ 464 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-----DGKVNFWDWKTT 464 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecC-----CccEEEeechhh
Confidence 3567762 245668889988874 589999999763
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.76 E-value=1.6e-16 Score=168.09 Aligned_cols=263 Identities=15% Similarity=0.193 Sum_probs=176.1
Q ss_pred ecccccccCCCCCCCCcCCCC-eEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeE-eecccceeEEEEecCCCEEEE
Q 037368 7 FDFFEEKYGGKSTIPEEVSGN-ITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGF-QAHSSSVLFLQQLKQRNFLVT 81 (823)
Q Consensus 7 f~ff~~~~~~~~~~~~~~~~~-is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~-~~H~~~V~~i~~~~~~~~l~s 81 (823)
.+||++.... |...+.++.+ |+|.+..+ ++|++|+.||+|--|+ ..|..-+-+ ++|+..|.+|..+.. ..++|
T Consensus 302 in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t 379 (603)
T KOG0318|consen 302 INYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFT 379 (603)
T ss_pred EEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEE
Confidence 4678766555 3233566555 89998754 6899999999999999 555543223 679999999998653 56899
Q ss_pred EecCCCCcccccceeEEEEeCCCCCC--C--CCCCCCCceEEE-----------------EEeccC--CC-CCCceEEEE
Q 037368 82 VGEDEQVSAQQSAVCLKVFDLDKMEP--E--GTSSTSPDCIGI-----------------LRVFTS--QF-PEAKITSFL 137 (823)
Q Consensus 82 ~s~D~~~~~~~~~~~vkvWdl~~~~~--~--~~~~~~~~~~~~-----------------~~~~~~--~~-p~~~v~~va 137 (823)
+|.|.+ +|+-++..... . -+....|.++.. ++.+.. .. +.-.++++|
T Consensus 380 ~g~Dd~---------l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 380 IGWDDT---------LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred EecCCe---------EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 999998 99998853221 0 011223332211 110100 00 112489999
Q ss_pred EecCCCCcceEEEEEeCCeEEEEEccccccccccee-EEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCc
Q 037368 138 VLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK-LQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPK 215 (823)
Q Consensus 138 ~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~-~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~ 215 (823)
++|+++. +|+|+.||+|++|... ....+.. ...++.++||.++||||+ ..|+++... +|.+||+..+...
T Consensus 451 v~~~~~~---vaVGG~Dgkvhvysl~---g~~l~ee~~~~~h~a~iT~vaySpd~--~yla~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 451 VSPDGSE---VAVGGQDGKVHVYSLS---GDELKEEAKLLEHRAAITDVAYSPDG--AYLAAGDASRKVVLYDVASREVK 522 (603)
T ss_pred EcCCCCE---EEEecccceEEEEEec---CCcccceeeeecccCCceEEEECCCC--cEEEEeccCCcEEEEEcccCcee
Confidence 9999999 9999999999999742 1111222 245678999999999999 467766654 5999999876533
Q ss_pred ceEEccCCCccceecccCCCeEEE-ee-CCeEEEEecCCCCcccc----ccCCeEEEEeeCc-EEEEEEecCCCCccEEE
Q 037368 216 RQFLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVDGRGPCWA----FEGEKKLLGWFRG-YLLCVIADQRNSKNIFN 288 (823)
Q Consensus 216 ~~~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~g~~~~~~----~~g~~~~i~~~~~-ylv~~s~d~~~~~~~I~ 288 (823)
...+.-|...++|++|+|++++++ |+ |.+|.+|+++....... ..+....+.|..+ .+++.. .|..|+
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG-----~Da~iK 597 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSG-----QDANIK 597 (603)
T ss_pred cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEecc-----CcceeE
Confidence 333445888999999999998665 44 45899999873222122 2223567888655 444443 568999
Q ss_pred EEeCC
Q 037368 289 VYDLK 293 (823)
Q Consensus 289 I~D~~ 293 (823)
+|.+.
T Consensus 598 ~W~v~ 602 (603)
T KOG0318|consen 598 VWNVT 602 (603)
T ss_pred Eeccc
Confidence 99763
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.76 E-value=1.8e-16 Score=166.66 Aligned_cols=227 Identities=17% Similarity=0.179 Sum_probs=163.3
Q ss_pred CeEEEe-eCC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCS-SGR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~-~~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.+.++. .++ +.+++|+.+|.|++|+ .+++....+.+|...|.++.++++++++++++.|+. |++||+.
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------i~~~~~~ 123 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT---------IKVWDVE 123 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCe---------EEEEECC
Confidence 453444 444 4899999999999999 556777889999999999999999999999998887 9999997
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
.. .+...+..+ ..+ +++++++|++.. +++|+.+|.|.+|+.. .+.....+..+..+|+
T Consensus 124 ~~----------~~~~~~~~~--~~~---i~~~~~~~~~~~---l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~ 181 (289)
T cd00200 124 TG----------KCLTTLRGH--TDW---VNSVAFSPDGTF---VASSSQDGTIKLWDLR----TGKCVATLTGHTGEVN 181 (289)
T ss_pred Cc----------EEEEEeccC--CCc---EEEEEEcCcCCE---EEEEcCCCcEEEEEcc----ccccceeEecCccccc
Confidence 32 234444322 223 999999999877 8888879999999863 1222233334567899
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEEEecCCCCccccccC
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPCWAFEG 261 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~~~~~g 261 (823)
++.|+++++ .+++++.++.|.+|++... .....+..+...+.++.|+|++.++++. ++.|++|+.........+.+
T Consensus 182 ~~~~~~~~~-~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 182 SVAFSPDGE-KLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred eEEECCCcC-EEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 999999984 3444444667999999753 2444454566678889999988877654 56899999874333333434
Q ss_pred C---eEEEEeeC--cEEEEEEecCCCCccEEEEEe
Q 037368 262 E---KKLLGWFR--GYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 262 ~---~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D 291 (823)
+ ...+.|.. .++++++ .++.|++|+
T Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-----~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDGKRLASGS-----ADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCCCEEEEec-----CCCeEEecC
Confidence 3 34566654 6777776 457999996
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.76 E-value=7.4e-16 Score=187.69 Aligned_cols=229 Identities=11% Similarity=0.108 Sum_probs=160.5
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEcCCC-----e----eeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccc
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLDRGL-----K----FNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSA 94 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d~~~-----~----~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~ 94 (823)
.|+|++++ +.++++|+.||.|++|+.+. . ....+. +...|.+++|+| .+++|+|++.||+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~------- 556 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV------- 556 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe-------
Confidence 47777765 35789999999999998321 1 122333 346899999987 4789999999998
Q ss_pred eeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 95 VCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 95 ~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
|+|||+.+. .++..+..+ ..+ |++++|+| ++.. +++|+.||+|++|+.. .+....
T Consensus 557 --v~lWd~~~~----------~~~~~~~~H--~~~---V~~l~~~p~~~~~---L~Sgs~Dg~v~iWd~~----~~~~~~ 612 (793)
T PLN00181 557 --VQVWDVARS----------QLVTEMKEH--EKR---VWSIDYSSADPTL---LASGSDDGSVKLWSIN----QGVSIG 612 (793)
T ss_pred --EEEEECCCC----------eEEEEecCC--CCC---EEEEEEcCCCCCE---EEEEcCCCEEEEEECC----CCcEEE
Confidence 999999742 245454433 333 99999997 7888 9999999999999863 122222
Q ss_pred EEecCCCCcceEEEee-cCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee-CCeEEEEec
Q 037368 174 LQVDNQCSVMGLGFRV-DGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR-PEAVYFYEV 250 (823)
Q Consensus 174 ~~~~~~~~It~l~fs~-dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~-~~~I~i~~~ 250 (823)
.+ .....|+++.|.+ +| ..+++++ ++.|++||+.....+...+.+|...+.++.|.+.+.+++++ |+.|++|++
T Consensus 613 ~~-~~~~~v~~v~~~~~~g--~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 613 TI-KTKANICCVQFPSESG--RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EE-ecCCCeEEEEEeCCCC--CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 22 3356899999964 45 3455554 56799999975433455667788889999998666676655 568999998
Q ss_pred CCC------CccccccCCe---EE--EEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 251 DGR------GPCWAFEGEK---KL--LGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 251 ~g~------~~~~~~~g~~---~~--i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
... .....+.||. .. +.+.+.++++++. +++|.||+....
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-----D~~v~iw~~~~~ 740 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-----TNEVFVYHKAFP 740 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCEEEEEECCCC
Confidence 621 1223566652 23 3445778888874 589999997643
No 49
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=180.34 Aligned_cols=266 Identities=15% Similarity=0.160 Sum_probs=194.6
Q ss_pred CCCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEe-EeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 25 SGNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFG-FQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~-~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
...+.|...+++++++|+.+++|++|+ .++..+.+ +.+|.+.|.++++...++.|+|||.|.| +||||.
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t---------~rvWd~ 278 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT---------ERVWDC 278 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCc---------EEeEec
Confidence 455788888999999999999999999 67777777 9999999999999877899999999999 999998
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
.+ ..|++++..+. +.|.++...+. . +++|+.|.+|++|+.. .+....++..+.++|
T Consensus 279 ~s----------g~C~~~l~gh~-----stv~~~~~~~~--~---~~sgs~D~tVkVW~v~----n~~~l~l~~~h~~~V 334 (537)
T KOG0274|consen 279 ST----------GECTHSLQGHT-----SSVRCLTIDPF--L---LVSGSRDNTVKVWDVT----NGACLNLLRGHTGPV 334 (537)
T ss_pred CC----------CcEEEEecCCC-----ceEEEEEccCc--e---EeeccCCceEEEEecc----CcceEEEeccccccE
Confidence 74 34998887442 33888877765 6 7889999999999874 233445555578999
Q ss_pred ceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee-CCeEEEEecCCCCcc-ccc
Q 037368 183 MGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR-PEAVYFYEVDGRGPC-WAF 259 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~-~~~I~i~~~~g~~~~-~~~ 259 (823)
.++.... ..+++++ ++.|.+|+... ..+.+.+.+|...|.|+.+.+...++.|+ |++|++||.++...| .++
T Consensus 335 ~~v~~~~----~~lvsgs~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 335 NCVQLDE----PLLVSGSYDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred EEEEecC----CEEEEEecCceEEEEEhhh-ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhh
Confidence 9999873 2455555 55699999874 45788888999999998776555555554 568999999854134 567
Q ss_pred cCCe---EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEecc---ccceeEEEeecCcEEEEEcCCeEEEEeecCh
Q 037368 260 EGEK---KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLV---VKEVSHMLCEWGNIILVMTDKSVLCIGEKDM 333 (823)
Q Consensus 260 ~g~~---~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~---i~~v~~v~~~~~~~~vvs~~~~v~~l~~~~~ 333 (823)
.+|. ..+...+++++..+. +++|++||...+....... ...+..+ ......++++.+..-+.++....
T Consensus 410 ~~h~~~v~~l~~~~~~Lvs~~a-----D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l-~~~~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTSLVSSLLLRDNFLVSSSA-----DGTIKLWDAEEGECLRTLEGRHVGGVSAL-ALGKEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcccccccccccceeEeccc-----cccEEEeecccCceeeeeccCCcccEEEe-ecCcceEEEEecCCeeEEEeccc
Confidence 7774 355667788888875 5799999998765544332 2333332 21124455544444555554443
Q ss_pred H
Q 037368 334 E 334 (823)
Q Consensus 334 ~ 334 (823)
-
T Consensus 484 ~ 484 (537)
T KOG0274|consen 484 G 484 (537)
T ss_pred C
Confidence 3
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.75 E-value=2e-16 Score=161.47 Aligned_cols=239 Identities=14% Similarity=0.165 Sum_probs=170.3
Q ss_pred cCCCCeEEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCC---CEEEEEecCCCCcccccceeEEE
Q 037368 23 EVSGNITCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQR---NFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 23 ~~~~~is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~---~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
.-++-|+++-..+++|++|+.||++++||..|+.+++..||+++|..+++.-.. ..|+|+|.|.+ +++
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt---------l~L 173 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT---------LRL 173 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCce---------EEE
Confidence 335568888877899999999999999999999999999999999987775433 35999999998 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc--cc--------ccccc
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG--DI--------ARERI 169 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~--~~--------~~~~~ 169 (823)
|-.+..+. .-.++..-+. +..+ |-+|+..+++.. +++|+.|.++.+|+. +. .+.+.
T Consensus 174 w~~~~~~~------~~~~~~~~~G--Hk~~---V~sVsv~~sgtr---~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 174 WKWNVGEN------KVKALKVCRG--HKRS---VDSVSVDSSGTR---FCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEecCchh------hhhHHhHhcc--cccc---eeEEEecCCCCe---EEeecccceeeecccCCCccccccccchhhhh
Confidence 99885431 1112211122 2344 999999999999 999999999999981 11 01111
Q ss_pred ---------cc--eeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeE
Q 037368 170 ---------TR--FKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLEL 237 (823)
Q Consensus 170 ---------~k--~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~l 237 (823)
.+ ..++..+.++|.++.|++.+ .+|.++ +.+|+.||+...+. ...+. .+..++|+..+|...+
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~---v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT---VIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKL 314 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCCC---ceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccce
Confidence 11 11233457899999998854 566665 66899999986542 23332 3456889999998877
Q ss_pred EEe-eC-CeEEEEecCCCCc---cccccCCeE---EEEeeC---cEEEEEEecCCCCccEEEEEeCCC
Q 037368 238 IIG-RP-EAVYFYEVDGRGP---CWAFEGEKK---LLGWFR---GYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 238 iv~-~~-~~I~i~~~~g~~~---~~~~~g~~~---~i~~~~---~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
+++ +. ..|++||++.++. ...|-||+. .+.|.. ..++.++. |+++++||+..
T Consensus 315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~-----D~t~klWDvRS 377 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY-----DNTVKLWDVRS 377 (423)
T ss_pred eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec-----CCeEEEEEecc
Confidence 654 43 4899999974432 256778853 455543 35666764 58999999965
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=3.1e-17 Score=179.71 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=172.6
Q ss_pred EEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
+|++.++.++++|+.+|.+.++| .+..++.+.+||.+.|+.|+.+|++..++|+|.|.| ||+||+.-...
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt---------VkfWdf~l~~~ 488 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT---------VKFWDFKLVVS 488 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE---------EEEEeEEEEec
Confidence 33334567899999999999999 777777788999999999999999999999999998 99999863221
Q ss_pred CCCCCCCC-ce-----EEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee-EEecCCC
Q 037368 108 EGTSSTSP-DC-----IGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK-LQVDNQC 180 (823)
Q Consensus 108 ~~~~~~~~-~~-----~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~-~~~~~~~ 180 (823)
..|+. .. .+++.+ + ..|.|+++|||++. +|+|..|.+|++|..|- .|.- .++.+.-
T Consensus 489 ---~~gt~~k~lsl~~~rtLel-----~-ddvL~v~~Spdgk~---LaVsLLdnTVkVyflDt-----lKFflsLYGHkL 551 (888)
T KOG0306|consen 489 ---VPGTQKKVLSLKHTRTLEL-----E-DDVLCVSVSPDGKL---LAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL 551 (888)
T ss_pred ---cCcccceeeeeccceEEec-----c-ccEEEEEEcCCCcE---EEEEeccCeEEEEEecc-----eeeeeeeccccc
Confidence 01111 00 123332 2 34999999999999 99999999999997652 2222 2567899
Q ss_pred CcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEE--EeeCCeEEEEecCCCCccc
Q 037368 181 SVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI--IGRPEAVYFYEVDGRGPCW 257 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li--v~~~~~I~i~~~~g~~~~~ 257 (823)
||.++..|||++ .+.+++ +..|++|-++= +.+.+.+-.|...+-|+.|-|..++. .|.++.|+-||-+.=....
T Consensus 552 PV~smDIS~DSk--livTgSADKnVKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 552 PVLSMDISPDSK--LIVTGSADKNVKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ 628 (888)
T ss_pred ceeEEeccCCcC--eEEeccCCCceEEecccc-chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe
Confidence 999999999984 455555 45699999863 34555555677788899999977633 4556789999865222234
Q ss_pred cccCCe-----EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 258 AFEGEK-----KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 258 ~~~g~~-----~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
.++||. ..+.+.|.|+++.+. |.+|++|......
T Consensus 629 ~L~~H~~ev~cLav~~~G~~vvs~sh-----D~sIRlwE~tde~ 667 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSPNGSFVVSSSH-----DKSIRLWERTDEI 667 (888)
T ss_pred eeccchheeeeeEEcCCCCeEEeccC-----CceeEeeeccCcc
Confidence 677773 245667889998884 5899999754433
No 52
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.6e-16 Score=174.24 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=178.4
Q ss_pred CEEEEEecCCeEEEEcC-----CCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDR-----GLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~-----~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
..|++|+.|.++++|.- ..-++....+|++.|.+++++..+ .+|+|+|.|.| +|+|++.+..
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t---------lK~W~l~~s~--- 445 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT---------LKLWDLPKSK--- 445 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce---------EEEecCCCcc---
Confidence 48899999999999942 223455677899999999997644 78999999998 9999998622
Q ss_pred CCCCCCceE---EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEE
Q 037368 110 TSSTSPDCI---GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLG 186 (823)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~ 186 (823)
.+..|..+ .+.+.|+ ..|+||+++|+.+. ||+|+.|.+.++|+.+ ...-.-++..+.-.|+++.
T Consensus 446 -~~~~~~~~~~~~t~~aHd-----KdIN~Vaia~ndkL---iAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~ 512 (775)
T KOG0319|consen 446 -ETAFPIVLTCRYTERAHD-----KDINCVAIAPNDKL---IATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVS 512 (775)
T ss_pred -cccccceehhhHHHHhhc-----ccccceEecCCCce---EEecccccceeeeccc----CceEEEEeeCCccceEEEE
Confidence 12222111 1112222 33999999999999 9999999999999864 1222334456677899999
Q ss_pred EeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEee-CCeEEEEecCCCCcc-ccccCC
Q 037368 187 FRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGR-PEAVYFYEVDGRGPC-WAFEGE 262 (823)
Q Consensus 187 fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~-~~~I~i~~~~g~~~~-~~~~g~ 262 (823)
|++.. .++++++ +.+|++|.+++. .+.++|++|.+.+-.+.|-.+|. ++.++ ++-|++|+++ ++.| .++++|
T Consensus 513 Fs~~d--q~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik-t~eC~~tlD~H 588 (775)
T KOG0319|consen 513 FSKND--QLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK-TNECEMTLDAH 588 (775)
T ss_pred ecccc--ceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc-chhhhhhhhhc
Confidence 99987 4666665 457999999875 48899999999888777766554 55544 4679999998 4455 467776
Q ss_pred e---EEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEEEeecCcEEEEEcCCeEEEEeecCh-HHH
Q 037368 263 K---KLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHMLCEWGNIILVMTDKSVLCIGEKDM-ESK 336 (823)
Q Consensus 263 ~---~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v~~~~~~~~vvs~~~~v~~l~~~~~-~~~ 336 (823)
. ..++. ..++++++. .|+.|..|.=.+.... ... . ++ -.|.-. +.-
T Consensus 589 ~DrvWaL~~~~~~~~~~tgg-----~Dg~i~~wkD~Te~~~-~ee----------~--------~K----~~eaieq~Qe 640 (775)
T KOG0319|consen 589 NDRVWALSVSPLLDMFVTGG-----GDGRIIFWKDVTEEEQ-NEE----------Q--------EK----REEAIEQEQE 640 (775)
T ss_pred cceeEEEeecCccceeEecC-----CCeEEEEeecCcHHHH-HHH----------H--------HH----HHHHHHHHHH
Confidence 2 22222 234444444 3567777721110000 000 0 00 011111 223
Q ss_pred HHHHHHhccHHHHHHHHHhcCCC
Q 037368 337 LDMLFKKNLYTVAINLVQSQQAD 359 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~~~~ 359 (823)
++-|+.+++|-.|+-||-+...|
T Consensus 641 L~n~l~~~~~~~A~~LA~tLd~P 663 (775)
T KOG0319|consen 641 LENLLSQKRYTKAFVLALTLDKP 663 (775)
T ss_pred HHHHHhhhhhHHHHHhHhhccCc
Confidence 67778899999999999875444
No 53
>PTZ00421 coronin; Provisional
Probab=99.75 E-value=5.9e-16 Score=175.21 Aligned_cols=210 Identities=9% Similarity=0.066 Sum_probs=139.1
Q ss_pred eEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEE
Q 037368 59 GFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFL 137 (823)
Q Consensus 59 ~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va 137 (823)
.+.+|+++|++++|+| ++++|+|+|+|++ |+|||+...... .....++.++..+ ..+ |.+++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt---------IkIWdi~~~~~~---~~~~~~l~~L~gH--~~~---V~~l~ 132 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGT---------IMGWGIPEEGLT---QNISDPIVHLQGH--TKK---VGIVS 132 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCE---------EEEEecCCCccc---cccCcceEEecCC--CCc---EEEEE
Confidence 4789999999999999 8899999999998 999999743100 0001124444422 334 99999
Q ss_pred EecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCc
Q 037368 138 VLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPK 215 (823)
Q Consensus 138 ~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~ 215 (823)
|+|++ .. +|+|+.||+|++|+.. .+.....+..+.++|++++|+++| ..+++++ ++.|++||++... .
T Consensus 133 f~P~~~~i---LaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~-~ 202 (493)
T PTZ00421 133 FHPSAMNV---LASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGT-I 202 (493)
T ss_pred eCcCCCCE---EEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEEEEECCC--CEEEEecCCCEEEEEECCCCc-E
Confidence 99986 57 9999999999999863 222223344467889999999998 4566665 5579999997543 4
Q ss_pred ceEEccCCCc-cceecccCCC-eEEEee-----CCeEEEEecCCCCcccc-ccCC---eEE---EEeeCcEEEEEEecCC
Q 037368 216 RQFLDNIGCS-TNSVAMSDRL-ELIIGR-----PEAVYFYEVDGRGPCWA-FEGE---KKL---LGWFRGYLLCVIADQR 281 (823)
Q Consensus 216 ~~~l~~~~~~-~~~~~~s~~~-~liv~~-----~~~I~i~~~~g~~~~~~-~~g~---~~~---i~~~~~ylv~~s~d~~ 281 (823)
...+..|... ...+.|.+++ .+++++ ++.|++||++.....+. ...+ ... +.+.+.++++++.
T Consensus 203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk--- 279 (493)
T PTZ00421 203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK--- 279 (493)
T ss_pred EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe---
Confidence 4555555443 3355677654 444432 35899999874332222 1111 111 2224566666653
Q ss_pred CCccEEEEEeCCCCEEEE
Q 037368 282 NSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 282 ~~~~~I~I~D~~~~~i~~ 299 (823)
.+++|++||+.++...+
T Consensus 280 -gDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 280 -GEGNIRCFELMNERLTF 296 (493)
T ss_pred -CCCeEEEEEeeCCceEE
Confidence 36899999998765544
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=3e-16 Score=165.17 Aligned_cols=226 Identities=13% Similarity=0.150 Sum_probs=161.0
Q ss_pred CCeEEEee-CC-CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEe
Q 037368 26 GNITCCSS-GR-GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 26 ~~is~~~~-~~-~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
..++++++ ++ ..++.|+..|.|+++| .+-..++.+++|+++|..+.|+|++ ..|+|||+|+. +|+||
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v---------~k~~d 139 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV---------VKYWD 139 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCce---------EEEEE
Confidence 34544444 44 4668999999999999 4445778999999999999999965 56788888886 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC-CcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
+++. .+ .+.+.+++ .-|.|.+++|... . +++|+-||+|++|+.. ..+. ...-+++..
T Consensus 140 ~s~a-----------~v-~~~l~~ht---DYVR~g~~~~~~~hi---vvtGsYDg~vrl~DtR---~~~~-~v~elnhg~ 197 (487)
T KOG0310|consen 140 LSTA-----------YV-QAELSGHT---DYVRCGDISPANDHI---VVTGSYDGKVRLWDTR---SLTS-RVVELNHGC 197 (487)
T ss_pred cCCc-----------EE-EEEecCCc---ceeEeeccccCCCeE---EEecCCCceEEEEEec---cCCc-eeEEecCCC
Confidence 9852 12 22332221 2399999999754 6 8999999999999863 2221 222346789
Q ss_pred CcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEee-CCeEEEEecCCCCc---
Q 037368 181 SVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGR-PEAVYFYEVDGRGP--- 255 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~-~~~I~i~~~~g~~~--- 255 (823)
||.++.|-|.| ..++.+..+.|++||+.+.++....+.+|...++|+.+..+++ ++.|+ |+.|++|++. +-.
T Consensus 198 pVe~vl~lpsg--s~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t-~~Kvv~ 274 (487)
T KOG0310|consen 198 PVESVLALPSG--SLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT-NYKVVH 274 (487)
T ss_pred ceeeEEEcCCC--CEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEcc-ceEEEE
Confidence 99999999988 4677777888999999855545555556888999999987665 55544 6799999954 322
Q ss_pred cccccCCeE--EEEeeCcEEEEEEecCCCCccEEEEE
Q 037368 256 CWAFEGEKK--LLGWFRGYLLCVIADQRNSKNIFNVY 290 (823)
Q Consensus 256 ~~~~~g~~~--~i~~~~~ylv~~s~d~~~~~~~I~I~ 290 (823)
.+.++|+.. .+++.+..++++..+ +.+.+-
T Consensus 275 s~~~~~pvLsiavs~dd~t~viGmsn-----Glv~~r 306 (487)
T KOG0310|consen 275 SWKYPGPVLSIAVSPDDQTVVIGMSN-----GLVSIR 306 (487)
T ss_pred eeecccceeeEEecCCCceEEEeccc-----ceeeee
Confidence 256677744 445555677776643 455554
No 55
>PTZ00421 coronin; Provisional
Probab=99.72 E-value=1.7e-15 Score=171.53 Aligned_cols=195 Identities=13% Similarity=0.123 Sum_probs=136.4
Q ss_pred CCeEEEeeCC---CEEEEEecCCeEEEEc-CCC-------eeeEeEeecccceeEEEEecCC-CEEEEEecCCCCccccc
Q 037368 26 GNITCCSSGR---GKVVIGCDDGAVSLLD-RGL-------KFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQS 93 (823)
Q Consensus 26 ~~is~~~~~~---~~l~~gs~dG~i~~~d-~~~-------~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~ 93 (823)
..|.++++++ ..|++|+.||+|++|| .++ +.+..+.+|...|.+++|+|++ ++|+|+|.|++
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt------ 149 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV------ 149 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE------
Confidence 3488887643 5899999999999999 433 3466899999999999999975 79999999998
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 94 AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
|+|||+... .++.++..+ ..+ |.+++|+|++.. +|+|+.||+|++|+.. .+....
T Consensus 150 ---VrIWDl~tg----------~~~~~l~~h--~~~---V~sla~spdG~l---Latgs~Dg~IrIwD~r----sg~~v~ 204 (493)
T PTZ00421 150 ---VNVWDVERG----------KAVEVIKCH--SDQ---ITSLEWNLDGSL---LCTTSKDKKLNIIDPR----DGTIVS 204 (493)
T ss_pred ---EEEEECCCC----------eEEEEEcCC--CCc---eEEEEEECCCCE---EEEecCCCEEEEEECC----CCcEEE
Confidence 999999842 244455432 233 999999999999 9999999999999862 122222
Q ss_pred EEecCCCC-cceEEEeecCCeEEEEEEc----CCeEEEEEecCCCCcceEEcc-CCCccceecccCCCeE-EEee--CCe
Q 037368 174 LQVDNQCS-VMGLGFRVDGQALQLFAVT----PNSVILFSLQNQPPKRQFLDN-IGCSTNSVAMSDRLEL-IIGR--PEA 244 (823)
Q Consensus 174 ~~~~~~~~-It~l~fs~dg~~~~l~~~t----~~~V~~~d~~~~~~~~~~l~~-~~~~~~~~~~s~~~~l-iv~~--~~~ 244 (823)
.+..+.+. +..+.|.+++. .++.++. ++.|.+||++....+...... ....+....|++++.+ ++++ ++.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred EEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 23333333 44677888763 3333332 356999999754334444332 2233344567888764 4443 568
Q ss_pred EEEEecCC
Q 037368 245 VYFYEVDG 252 (823)
Q Consensus 245 I~i~~~~g 252 (823)
|++|++..
T Consensus 284 Iriwdl~~ 291 (493)
T PTZ00421 284 IRCFELMN 291 (493)
T ss_pred EEEEEeeC
Confidence 99999874
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.72 E-value=2.1e-16 Score=166.63 Aligned_cols=235 Identities=14% Similarity=0.178 Sum_probs=152.7
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEcCCCeeeE-------------eEeecccceeEEEEecCC-CEEEEEecCCCCc
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLDRGLKFNF-------------GFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVS 89 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d~~~~~~~-------------~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~ 89 (823)
..|.+...+ ++.|++.+.....+++|+.|..+- .-+||.+.++|-+|+|.. +.++|||.||+
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-- 292 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-- 292 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc--
Confidence 356666654 456766677788999998765432 235799999999999965 67999999999
Q ss_pred ccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec---cCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEE-cccc
Q 037368 90 AQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF---TSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIK-GDIA 165 (823)
Q Consensus 90 ~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~-~~~~ 165 (823)
+||||+..... .++.++.- ....| +++++|+||+.. ||+|..||+|.+|+ +.+.
T Consensus 293 -------lRiWdv~~~k~---------q~qVik~k~~~g~Rv~---~tsC~~nrdg~~---iAagc~DGSIQ~W~~~~~~ 350 (641)
T KOG0772|consen 293 -------LRIWDVNNTKS---------QLQVIKTKPAGGKRVP---VTSCAWNRDGKL---IAAGCLDGSIQIWDKGSRT 350 (641)
T ss_pred -------EEEEecCCchh---------heeEEeeccCCCcccC---ceeeecCCCcch---hhhcccCCceeeeecCCcc
Confidence 99999985321 12233311 11234 999999999999 99999999999998 3321
Q ss_pred cccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC--CccceecccCCCeEEEeeC-
Q 037368 166 RERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG--CSTNSVAMSDRLELIIGRP- 242 (823)
Q Consensus 166 ~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~--~~~~~~~~s~~~~liv~~~- 242 (823)
.....+.+--+.....|++|+||.||+ .++.-+.++.+++||++.-..+..+..+-- .+-.-++|||+.++++.+.
T Consensus 351 v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 351 VRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred cccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 111111111222345899999999995 344445577899999986444444433211 2234579999999886532
Q ss_pred -------CeEEEEecCCCCcccc--ccC-CeEEEEeeC--cEEEEEEecCCCCccEEEEE
Q 037368 243 -------EAVYFYEVDGRGPCWA--FEG-EKKLLGWFR--GYLLCVIADQRNSKNIFNVY 290 (823)
Q Consensus 243 -------~~I~i~~~~g~~~~~~--~~g-~~~~i~~~~--~ylv~~s~d~~~~~~~I~I~ 290 (823)
+.+++|+...=...+. +.+ +...+.|+. +.|.+.+. +|++.||
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg-----dG~~~vy 484 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG-----DGTAHVY 484 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC-----CCceEEE
Confidence 4578887642211122 222 234566765 46666664 4677776
No 57
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.2e-16 Score=162.24 Aligned_cols=226 Identities=12% Similarity=0.111 Sum_probs=172.4
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEc--CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLD--RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
+..+.++ +..+++++.|=.+++|| ...+++++..+|+..|.++.|.|.|++++|||.|.+ ||.|+++
T Consensus 153 v~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t---------ik~We~~ 223 (406)
T KOG0295|consen 153 VFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT---------IKAWECD 223 (406)
T ss_pred eeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc---------eeEEecc
Confidence 4444443 46789999999999999 336788899999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
. .-|+.++.. ++ ..|..|+.+.||.. +|+++.|.+|++|-.. .+.. ...+.+++-||.
T Consensus 224 t----------g~cv~t~~~----h~-ewvr~v~v~~DGti---~As~s~dqtl~vW~~~---t~~~-k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 T----------GYCVKTFPG----HS-EWVRMVRVNQDGTI---IASCSNDQTLRVWVVA---TKQC-KAELREHEHPVE 281 (406)
T ss_pred c----------ceeEEeccC----ch-HhEEEEEecCCeeE---EEecCCCceEEEEEec---cchh-hhhhhccccceE
Confidence 4 347777652 22 56999999999999 9999999999999542 1111 234556788999
Q ss_pred eEEEeecCC-------------eEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEE
Q 037368 184 GLGFRVDGQ-------------ALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYF 247 (823)
Q Consensus 184 ~l~fs~dg~-------------~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i 247 (823)
.++|.|... ..++.+++. ..|++||+... .+.-++.+|+..+..++|+|.|+++++. |+++++
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 999977520 135666664 46999999753 4666777899999999999999988754 359999
Q ss_pred EecCCCCccc-cccCC---eEEEEee--CcEEEEEEecCCCCccEEEEEe
Q 037368 248 YEVDGRGPCW-AFEGE---KKLLGWF--RGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 248 ~~~~g~~~~~-~~~g~---~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D 291 (823)
|+.+ .+.|. +++.| ...+.++ .+|+++++- +.++++|.
T Consensus 361 wdl~-~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV-----dqt~KvwE 404 (406)
T KOG0295|consen 361 WDLK-NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV-----DQTVKVWE 404 (406)
T ss_pred EEec-cceeeeccCCCcceeEEEecCCCCceEEeccc-----cceeeeee
Confidence 9998 44553 45554 4455554 458888775 47899985
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.72 E-value=2.5e-17 Score=165.52 Aligned_cols=234 Identities=14% Similarity=0.189 Sum_probs=170.0
Q ss_pred CcCC-CCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEE
Q 037368 22 EEVS-GNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 22 ~~~~-~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
+.++ ..|-|.-+.+..|++||+|.+|++|| .+|++++++-+|...|.++.|+ .++++|||.|.+ +.|
T Consensus 233 L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrs---------iaV 301 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRS---------IAV 301 (499)
T ss_pred hhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCce---------eEE
Confidence 3443 34888888899999999999999999 8899999999999999999995 579999999998 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQ 179 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~ 179 (823)
||+.... .-.|.+.+..+ - +.|..|.|+.. + |+++++|.+|++|+.. .+...+++..+.
T Consensus 302 Wdm~sps-------~it~rrVLvGH--r---AaVNvVdfd~k--y---IVsASgDRTikvW~~s----t~efvRtl~gHk 360 (499)
T KOG0281|consen 302 WDMASPT-------DITLRRVLVGH--R---AAVNVVDFDDK--Y---IVSASGDRTIKVWSTS----TCEFVRTLNGHK 360 (499)
T ss_pred EeccCch-------HHHHHHHHhhh--h---hheeeeccccc--e---EEEecCCceEEEEecc----ceeeehhhhccc
Confidence 9998431 11133333322 1 23999999875 7 9999999999999864 334455666667
Q ss_pred CCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe-eCCeEEEEecCCC-Cc--
Q 037368 180 CSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG-RPEAVYFYEVDGR-GP-- 255 (823)
Q Consensus 180 ~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~-~~~~I~i~~~~g~-~~-- 255 (823)
-.|-++.++.. .++..+++++|++||+... .+.+++++|...+.|+-|. +.+++.| .|+.|++|+.... .+
T Consensus 361 RGIAClQYr~r---lvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 361 RGIACLQYRDR---LVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred ccceehhccCe---EEEecCCCceEEEEecccc-HHHHHHhchHHhhhheeec-CceeeeccccceEEEEecccccCCcc
Confidence 77888887642 2333335678999999853 4788899998899999983 3445543 4689999997521 11
Q ss_pred -----cc-c---ccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 256 -----CW-A---FEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 256 -----~~-~---~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
|+ . ..|....+.++...+++.+. +.+|.|||..+..-
T Consensus 436 ~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssH-----ddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 436 PASTLCLRTLVEHSGRVFRLQFDEFQIISSSH-----DDTILIWDFLNGPP 481 (499)
T ss_pred cccchHHHhhhhccceeEEEeecceEEEeccC-----CCeEEEEEcCCCCc
Confidence 21 1 12333456666666766664 47999999877543
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.5e-15 Score=147.29 Aligned_cols=205 Identities=12% Similarity=0.168 Sum_probs=150.3
Q ss_pred eeEeEeecccceeEEEEecC-CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceE
Q 037368 56 FNFGFQAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKIT 134 (823)
Q Consensus 56 ~~~~~~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~ 134 (823)
.+++.++|.++|..++++|. |.+|||||.|.+ ||||++...+ +-.|..++.- .++.. |.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~---------vriw~~~~~~-------s~~ck~vld~-~hkrs---VR 65 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKA---------VRIWSTSSGD-------SWTCKTVLDD-GHKRS---VR 65 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCce---------EEEEecCCCC-------cEEEEEeccc-cchhe---ee
Confidence 45678999999999999998 889999999998 9999998422 2223333321 12334 99
Q ss_pred EEEEecCCCCcceEEEEEeCCeEEEEEcccccccc-cceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCC
Q 037368 135 SFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERI-TRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQ 212 (823)
Q Consensus 135 ~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~-~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~ 212 (823)
+|||+|.|++ +|+|+-|+++.+|... +.. ....++..+++.|.+++|+.+| .+|+.++.+ .|.+|.+...
T Consensus 66 svAwsp~g~~---La~aSFD~t~~Iw~k~---~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 66 SVAWSPHGRY---LASASFDATVVIWKKE---DGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred eeeecCCCcE---EEEeeccceEEEeecC---CCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCC
Confidence 9999999999 9999999999999631 111 1233344568899999999999 578777755 5999998754
Q ss_pred C--CcceEEccCCCccceecccCCCeEEE--eeCCeEEEEecC--CCCcc-ccccCCe---EEEEe--eCcEEEEEEecC
Q 037368 213 P--PKRQFLDNIGCSTNSVAMSDRLELII--GRPEAVYFYEVD--GRGPC-WAFEGEK---KLLGW--FRGYLLCVIADQ 280 (823)
Q Consensus 213 ~--~~~~~l~~~~~~~~~~~~s~~~~liv--~~~~~I~i~~~~--g~~~~-~~~~g~~---~~i~~--~~~ylv~~s~d~ 280 (823)
. ....+|.+|.-.+.-+.|-|.-.+++ +.|++|++|.-. +...| .++.|+. ..++| .|..+++.+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s--- 214 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS--- 214 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec---
Confidence 3 46677888888888889999665554 357899999765 22333 4677763 23444 466888777
Q ss_pred CCCccEEEEEeCC
Q 037368 281 RNSKNIFNVYDLK 293 (823)
Q Consensus 281 ~~~~~~I~I~D~~ 293 (823)
.+++|+||-.-
T Consensus 215 --dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 215 --DDGTVSIWRLY 225 (312)
T ss_pred --CCcceEeeeec
Confidence 56899999643
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.72 E-value=5.2e-16 Score=175.91 Aligned_cols=228 Identities=17% Similarity=0.223 Sum_probs=169.4
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.|.+++.+ ++++++|+.|.++++|| .+|.++++|.+|+..|.+|.. .+..++++|.|.+ ||||++.
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~t---------VkVW~v~ 319 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNT---------VKVWDVT 319 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCce---------EEEEecc
Confidence 47777776 78999999999999999 889999999999999999987 4578899999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
++.|+++++.+ ..| |.++.++ +.. +++|+.||+|.+|+.. ++.....+..+.+.|+
T Consensus 320 ----------n~~~l~l~~~h--~~~---V~~v~~~--~~~---lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 320 ----------NGACLNLLRGH--TGP---VNCVQLD--EPL---LVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVY 375 (537)
T ss_pred ----------CcceEEEeccc--ccc---EEEEEec--CCE---EEEEecCceEEEEEhh----hceeeeeecCCcceEE
Confidence 34588887743 556 9999998 458 9999999999999863 3344455566789999
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-CCeEEEEecCCCCccccccC
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVDGRGPCWAFEG 261 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~g~~~~~~~~g 261 (823)
++.+.... ..+-.+.++.|++||++++..+..++.+|+..+.++. ..+++++ +. ++.|++||.+..+...++++
T Consensus 376 sl~~~~~~--~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 376 SLIVDSEN--RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred EEEecCcc--eEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecccCceeeeecc
Confidence 99887632 3444455677999999875346677777777664433 3455554 44 35899999875443345565
Q ss_pred -CeE---EEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEE
Q 037368 262 -EKK---LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIA 298 (823)
Q Consensus 262 -~~~---~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~ 298 (823)
+.. .+...+..+++.+ .++++++||+.+....
T Consensus 452 ~~~~~v~~l~~~~~~il~s~-----~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 452 RHVGGVSALALGKEEILCSS-----DDGSVKLWDLRSGTLI 487 (537)
T ss_pred CCcccEEEeecCcceEEEEe-----cCCeeEEEecccCchh
Confidence 333 3333335566555 4689999999875543
No 61
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.72 E-value=7.6e-17 Score=152.78 Aligned_cols=131 Identities=23% Similarity=0.353 Sum_probs=117.7
Q ss_pred CCCCHHHHHhhhc--cCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcc
Q 037368 564 MLPSPVDFLNIFV--HHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAE 641 (823)
Q Consensus 564 ~~~~~~~~~~~f~--~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (823)
...+|..+++.|. +.|++++.||+++++.++ ..+.+||+|+++|+.+ .
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~---~------------------------ 55 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKY---D------------------------ 55 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHH---C------------------------
Confidence 5678999999998 569999999999998753 2568999999999886 1
Q ss_pred cCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHhc
Q 037368 642 YNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQA 721 (823)
Q Consensus 642 ~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~~ 721 (823)
++++++||++ .+.+||+++|+++|..+++++++++||+++|++++|++++++.
T Consensus 56 ---------------------~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~ 108 (140)
T smart00299 56 ---------------------PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH 108 (140)
T ss_pred ---------------------HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc
Confidence 4799999994 2889999999999999999999999999999999999999996
Q ss_pred -CChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCC
Q 037368 722 -HDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELG 757 (823)
Q Consensus 722 -~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~ 757 (823)
+|++.|++||++.+ ++++|..+++++++.|
T Consensus 109 ~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~~~ 139 (140)
T smart00299 109 LGNYEKAIEYFVKQN------NPELWAEVLKALLDKP 139 (140)
T ss_pred ccCHHHHHHHHHhCC------CHHHHHHHHHHHHccC
Confidence 99999999999965 7799999999999765
No 62
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.71 E-value=8.9e-17 Score=165.21 Aligned_cols=264 Identities=11% Similarity=0.169 Sum_probs=181.7
Q ss_pred EEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
-+++..+..|++|+..|.+.+|+ ..++-....++|..+|.+|.++++|.+++|+..||. ||+|+.....
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~---------iKyWqpnmnn- 171 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM---------IKYWQPNMNN- 171 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCce---------EEecccchhh-
Confidence 44444557899999999999999 334433346899999999999999999999999997 9999987421
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc-eeEEecCCCCcceEE
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR-FKLQVDNQCSVMGLG 186 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k-~~~~~~~~~~It~l~ 186 (823)
+..+..+. . ..|+++||+|+.+. +++.+.||+|+||+.- .+| .+++..+.-.|+++.
T Consensus 172 ----------Vk~~~ahh-~---eaIRdlafSpnDsk---F~t~SdDg~ikiWdf~-----~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 172 ----------VKIIQAHH-A---EAIRDLAFSPNDSK---FLTCSDDGTIKIWDFR-----MPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred ----------hHHhhHhh-h---hhhheeccCCCCce---eEEecCCCeEEEEecc-----CCchhheeccCCCCcceec
Confidence 11222111 1 33999999999999 9999999999999863 122 234455566799999
Q ss_pred EeecCCeEEEEEEcCCe-EEEEEecCCCCcceEEccCCCccceecccCCCeEE-Ee-eCCeEEEEecCCCCccccccCCe
Q 037368 187 FRVDGQALQLFAVTPNS-VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IG-RPEAVYFYEVDGRGPCWAFEGEK 263 (823)
Q Consensus 187 fs~dg~~~~l~~~t~~~-V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~-~~~~I~i~~~~g~~~~~~~~g~~ 263 (823)
|.|.- ..+++++++. |++||.++.. +..++-.|...|-.+.|+|++.++ ++ .|..++++|++.-...+.+.||+
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHK 306 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcch
Confidence 99975 4677777654 9999987643 455555677777788999988754 44 44589999987333346677774
Q ss_pred ---EEEEee---CcEEEEEEecCCCCccEEEEEeCCCC-EEEE--eccccceeEE-EeecCcEEEEEcCCeEEEEeecC
Q 037368 264 ---KLLGWF---RGYLLCVIADQRNSKNIFNVYDLKNR-LIAH--SLVVKEVSHM-LCEWGNIILVMTDKSVLCIGEKD 332 (823)
Q Consensus 264 ---~~i~~~---~~ylv~~s~d~~~~~~~I~I~D~~~~-~i~~--~~~i~~v~~v-~~~~~~~~vvs~~~~v~~l~~~~ 332 (823)
..+.|+ .+.++++. .|+.|..|.+... -+.- ..+-..+..+ ..+-|.++..++.++.++.+-++
T Consensus 307 kdv~~~~WhP~~~~lftsgg-----~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGG-----SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeecc-----CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 356664 34555554 4689999988632 2110 0111113333 44556677666667777776433
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=158.24 Aligned_cols=193 Identities=14% Similarity=0.113 Sum_probs=139.7
Q ss_pred eEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 28 ITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 28 is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
|+.+.++. ..+++++.|-.|++|. .........++|.++|+.+..+|.|+||+++|.|++ .-+.|+..
T Consensus 264 i~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~---------w~Fsd~~~ 334 (506)
T KOG0289|consen 264 ITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGT---------WAFSDISS 334 (506)
T ss_pred EEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCce---------EEEEEccC
Confidence 44444443 3578999999999999 444444467899999999999999999999999998 77778773
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcce
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
+. ++.....-... -.+++.+|||||.. +++|+.||.|++|+.. +.. ....+-.+.+||+.
T Consensus 335 --------g~--~lt~vs~~~s~---v~~ts~~fHpDgLi---fgtgt~d~~vkiwdlk---s~~-~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 335 --------GS--QLTVVSDETSD---VEYTSAAFHPDGLI---FGTGTPDGVVKIWDLK---SQT-NVAKFPGHTGPVKA 394 (506)
T ss_pred --------Cc--EEEEEeecccc---ceeEEeeEcCCceE---EeccCCCceEEEEEcC---Ccc-ccccCCCCCCceeE
Confidence 22 33222211111 23999999999999 9999999999999863 111 11112245899999
Q ss_pred EEEeecCCeEEEEEEcCCe-EEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCCeEEEEecC
Q 037368 185 LGFRVDGQALQLFAVTPNS-VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYFYEVD 251 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~-V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i~~~~ 251 (823)
|+|+.+| +.|+++++++ |++||++.....++..-..+.++..++|.+.|++++..+..+++|-..
T Consensus 395 i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 395 ISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999 8898888776 999999854323333223344788899999999876656666665443
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.3e-16 Score=151.14 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=160.7
Q ss_pred CCEEEEEecCCeEEEEc--CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD--RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
.+.+++++.||++++|| ...++++.||.|...|.++.+.+ .+..++|.|-|+| ||+|+...
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T---------iKLW~~~r------- 136 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT---------IKLWDPNR------- 136 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc---------eEeecCCC-------
Confidence 46889999999999999 33568889999999999999987 4566888899999 99999884
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEEecC-CCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeec
Q 037368 112 STSPDCIGILRVFTSQFPEAKITSFLVLEE-APPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVD 190 (823)
Q Consensus 112 ~~~~~~~~~~~~~~~~~p~~~v~~va~~~d-~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~d 190 (823)
|..++|++.+. .-|...+|+|. .+. +|+.++||..++|+.. .. .|...+..++..|.+..|+.-
T Consensus 137 ---~~Sv~Tf~gh~-----~~Iy~a~~sp~~~nl---fas~Sgd~~l~lwdvr---~~-gk~~~i~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 137 ---PNSVQTFNGHN-----SCIYQAAFSPHIPNL---FASASGDGTLRLWDVR---SP-GKFMSIEAHNSEILCCDWSKY 201 (311)
T ss_pred ---CcceEeecCCc-----cEEEEEecCCCCCCe---EEEccCCceEEEEEec---CC-CceeEEEeccceeEeeccccc
Confidence 34566765331 33899999984 467 9999999999999963 33 344445556678999999865
Q ss_pred CCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe--EEEee-CCeEEEEecCCCCccc-cccCC---
Q 037368 191 GQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE--LIIGR-PEAVYFYEVDGRGPCW-AFEGE--- 262 (823)
Q Consensus 191 g~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~--liv~~-~~~I~i~~~~g~~~~~-~~~g~--- 262 (823)
.. .+|+++. ++.|+.||++.-..|...+.+|+-.++.+.|||... ++.++ |-++++|+.+....+. ..+-|
T Consensus 202 ~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF 280 (311)
T KOG0277|consen 202 NH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF 280 (311)
T ss_pred CC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE
Confidence 53 4565554 456999999865557777889999999999999654 34443 4589999987332221 22222
Q ss_pred eEEEEe---eCcEEEEEEecCCCCccEEEEEeC
Q 037368 263 KKLLGW---FRGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 263 ~~~i~~---~~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
..++.| .+.+++.+. -|..+.||++
T Consensus 281 v~g~Dws~~~~~~vAs~g-----WDe~l~Vw~p 308 (311)
T KOG0277|consen 281 VCGLDWSLFDPGQVASTG-----WDELLYVWNP 308 (311)
T ss_pred EeccccccccCceeeecc-----cccceeeecc
Confidence 122322 345676665 4689999986
No 65
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.69 E-value=6.1e-16 Score=156.45 Aligned_cols=217 Identities=17% Similarity=0.214 Sum_probs=165.4
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
.++++|+.|+.|+-|| ...+.++.+.||-..|.+++.+|.-+.|+|||.|.+ +||||+....
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst---------~RvWDiRtr~-------- 268 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST---------IRVWDIRTRA-------- 268 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce---------EEEeeecccc--------
Confidence 5899999999999999 667889999999999999999999999999999998 9999998542
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee-EEecCCCCcceEEEeecCCe
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK-LQVDNQCSVMGLGFRVDGQA 193 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~-~~~~~~~~It~l~fs~dg~~ 193 (823)
.+.++..| ..| |.+|.+.|-.-+ +++|+.|++|++||.- ..|.. ++..++-.|.+++..|..
T Consensus 269 --~V~~l~GH--~~~---V~~V~~~~~dpq---vit~S~D~tvrlWDl~-----agkt~~tlt~hkksvral~lhP~e-- 331 (460)
T KOG0285|consen 269 --SVHVLSGH--TNP---VASVMCQPTDPQ---VITGSHDSTVRLWDLR-----AGKTMITLTHHKKSVRALCLHPKE-- 331 (460)
T ss_pred --eEEEecCC--CCc---ceeEEeecCCCc---eEEecCCceEEEeeec-----cCceeEeeecccceeeEEecCCch--
Confidence 35555544 456 899988876667 9999999999999852 23333 455667889999999876
Q ss_pred EEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCC-eEEEEecCCCCcccc----------ccCC
Q 037368 194 LQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPE-AVYFYEVDGRGPCWA----------FEGE 262 (823)
Q Consensus 194 ~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~-~I~i~~~~g~~~~~~----------~~g~ 262 (823)
+..+.++.+.|..|++..+. ..+.+.+|...+++++...||-+++|+++ .+.+|+.+. |+.+. ++++
T Consensus 332 ~~fASas~dnik~w~~p~g~-f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwks-g~nyQ~~~t~vqpGSl~sE 409 (460)
T KOG0285|consen 332 NLFASASPDNIKQWKLPEGE-FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKS-GHNYQRGQTIVQPGSLESE 409 (460)
T ss_pred hhhhccCCccceeccCCccc-hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCc-CcccccccccccCCccccc
Confidence 45666678899999987543 44557788888899999999999999886 688999873 33321 1111
Q ss_pred e--EEEEe--eCcEEEEEEecCCCCccEEEEEeCC
Q 037368 263 K--KLLGW--FRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 263 ~--~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
. ...++ .+..|+++- .|.+|++|.-+
T Consensus 410 agI~as~fDktg~rlit~e-----adKtIk~~keD 439 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGE-----ADKTIKMYKED 439 (460)
T ss_pred cceeEEeecccCceEEecc-----CCcceEEEecc
Confidence 1 11122 345666654 46899999643
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.69 E-value=2.1e-16 Score=157.37 Aligned_cols=232 Identities=16% Similarity=0.243 Sum_probs=163.9
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEe--------EeecccceeEEEEecCCCEEEEEecCCCCcccccce
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFG--------FQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~--------~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~ 95 (823)
-+.|..++ +.+|++||.||.|.+|| .+|++.+. |--|..+|.||+|+.|..+|||++.||.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk-------- 286 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK-------- 286 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc--------
Confidence 36555543 35899999999999999 77776443 3347899999999999999999999998
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEE-eccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILR-VFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL 174 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~ 174 (823)
||||.+.+ .+|++.+. .+ + ..|+|+.|+.|++. +.+|+-|.+|++.-.. .|...+-
T Consensus 287 -IKvWri~t----------G~ClRrFdrAH--t---kGvt~l~FSrD~Sq---iLS~sfD~tvRiHGlK----SGK~LKE 343 (508)
T KOG0275|consen 287 -IKVWRIET----------GQCLRRFDRAH--T---KGVTCLSFSRDNSQ---ILSASFDQTVRIHGLK----SGKCLKE 343 (508)
T ss_pred -EEEEEEec----------chHHHHhhhhh--c---cCeeEEEEccCcch---hhcccccceEEEeccc----cchhHHH
Confidence 99999984 34877654 22 1 23999999999999 9999999999986321 1222333
Q ss_pred EecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEcc--CCCccceecccCCC--eEEEe-eCCeEEEEe
Q 037368 175 QVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDN--IGCSTNSVAMSDRL--ELIIG-RPEAVYFYE 249 (823)
Q Consensus 175 ~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~--~~~~~~~~~~s~~~--~liv~-~~~~I~i~~ 249 (823)
+..+.+-|+...|++||+ .++.++++++|++|+..+. .+..++.. ...+++.+..-|.+ +++++ +.++|++.+
T Consensus 344 frGHsSyvn~a~ft~dG~-~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGH-HIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred hcCccccccceEEcCCCC-eEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 445677899999999996 5677777888999998653 34555532 33456666555533 46665 567999998
Q ss_pred cCCCCccccc-----cC-C--eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 250 VDGRGPCWAF-----EG-E--KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 250 ~~g~~~~~~~-----~g-~--~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
+.|.-. ..| || . ...+++-|.++.++. +|+.+..+....+.+
T Consensus 422 ~qGQvV-rsfsSGkREgGdFi~~~lSpkGewiYcig-----ED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 422 MQGQVV-RSFSSGKREGGDFINAILSPKGEWIYCIG-----EDGVLYCFSVLSGKL 471 (508)
T ss_pred ccceEE-eeeccCCccCCceEEEEecCCCcEEEEEc-----cCcEEEEEEeecCce
Confidence 876421 122 22 1 234566677777766 457777777655443
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=159.15 Aligned_cols=229 Identities=14% Similarity=0.200 Sum_probs=163.4
Q ss_pred CCCeEEEeeCCC--EEEEEecCCeEEEEc-CCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSGRG--KVVIGCDDGAVSLLD-RGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~~~--~l~~gs~dG~i~~~d-~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
+..|-|++++++ .+++|+.||.|++|. .+|.+++.|. +|+..|+++.|+.|+..+.|+|.|.+ +||.
T Consensus 263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t---------vRiH 333 (508)
T KOG0275|consen 263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT---------VRIH 333 (508)
T ss_pred ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccce---------EEEe
Confidence 566899998764 689999999999999 8999999996 99999999999999999999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--C
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD--N 178 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~--~ 178 (823)
.+... .|+..++.+. +-|+-..|++||.. +.+++.||+|++|++.. +....++.. .
T Consensus 334 GlKSG----------K~LKEfrGHs-----Syvn~a~ft~dG~~---iisaSsDgtvkvW~~Kt----teC~~Tfk~~~~ 391 (508)
T KOG0275|consen 334 GLKSG----------KCLKEFRGHS-----SYVNEATFTDDGHH---IISASSDGTVKVWHGKT----TECLSTFKPLGT 391 (508)
T ss_pred ccccc----------hhHHHhcCcc-----ccccceEEcCCCCe---EEEecCCccEEEecCcc----hhhhhhccCCCC
Confidence 99742 4777777543 22899999999999 99999999999998742 222223322 2
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc---cCCCccceecccCCCeEE--EeeCCeEEEEecCCC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD---NIGCSTNSVAMSDRLELI--IGRPEAVYFYEVDGR 253 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~---~~~~~~~~~~~s~~~~li--v~~~~~I~i~~~~g~ 253 (823)
+-+|.++..-|.+...++.+.-.++|++-++.+. ..+.+. ..|...-++++||.|.++ +|-|+.++++.+...
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 5689999887766433333333467888888653 445552 345556677889999865 455667888876522
Q ss_pred CccccccCC---eEEEEee--CcEEEEEEecCCCCccEEEEEe
Q 037368 254 GPCWAFEGE---KKLLGWF--RGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 254 ~~~~~~~g~---~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D 291 (823)
+.-..+..| ..+++-+ .+.+++-+ +|+.+++|.
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHqNllAsYs-----EDgllKLWk 507 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQNLLASYS-----EDGLLKLWK 507 (508)
T ss_pred ceeeeeecccccccccccCcccchhhhhc-----ccchhhhcC
Confidence 111122222 3344333 33444333 578999995
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=3.6e-16 Score=161.10 Aligned_cols=222 Identities=18% Similarity=0.232 Sum_probs=163.0
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
.+|+.+.+. +.+++.+|+|+.+++|+ .++.+..++.+|+..|+++.|......++|++.|.| ||+||+
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt---------iK~WDl 290 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT---------IKLWDL 290 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch---------hhhhhh
Confidence 457777764 45788999999999999 778888899999999999999877667999999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
.+. .|.+++ .|.+.+..|..+ ... +++|..|++|++|++ ++.......+..+.|
T Consensus 291 ~k~----------~C~kt~------l~~S~cnDI~~~--~~~---~~SgH~DkkvRfwD~-----Rs~~~~~sv~~gg~v 344 (459)
T KOG0288|consen 291 QKA----------YCSKTV------LPGSQCNDIVCS--ISD---VISGHFDKKVRFWDI-----RSADKTRSVPLGGRV 344 (459)
T ss_pred hhh----------heeccc------cccccccceEec--cee---eeecccccceEEEec-----cCCceeeEeecCcce
Confidence 853 366553 233346777766 346 999999999999986 333333344557799
Q ss_pred ceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEcc----CCCccceecccCCCeEEEee--CCeEEEEecCCCCcc
Q 037368 183 MGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDN----IGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPC 256 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~----~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~ 256 (823)
|+|..+.+|. .++.++-++.+.++|++++. ..+++.. .++..+.+.|||++.+++++ ++.|++|++.+ +.+
T Consensus 345 tSl~ls~~g~-~lLsssRDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t-gKl 421 (459)
T KOG0288|consen 345 TSLDLSMDGL-ELLSSSRDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT-GKL 421 (459)
T ss_pred eeEeeccCCe-EEeeecCCCceeeeeccccc-EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC-ceE
Confidence 9999999984 45555567889999998764 4455532 23456678999999987644 46999999874 333
Q ss_pred -ccc--cCC---eEEEEee--CcEEEEEEecCCCCccEEEEE
Q 037368 257 -WAF--EGE---KKLLGWF--RGYLLCVIADQRNSKNIFNVY 290 (823)
Q Consensus 257 -~~~--~g~---~~~i~~~--~~ylv~~s~d~~~~~~~I~I~ 290 (823)
..+ .+. ...++|. |.+++.++ ....+++|
T Consensus 422 E~~l~~s~s~~aI~s~~W~~sG~~Llsad-----k~~~v~lW 458 (459)
T KOG0288|consen 422 EKVLSLSTSNAAITSLSWNPSGSGLLSAD-----KQKAVTLW 458 (459)
T ss_pred EEEeccCCCCcceEEEEEcCCCchhhccc-----CCcceEec
Confidence 222 222 3456664 67887776 34678887
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=1.3e-14 Score=159.39 Aligned_cols=274 Identities=15% Similarity=0.178 Sum_probs=189.6
Q ss_pred CCCeEEEeeCCCEEEEE-ecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 25 SGNITCCSSGRGKVVIG-CDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~g-s~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
...|-..+.+.+.++++ ...+.|++|+ .++++++++..- -+.+..|.|.+.++++|...|. +.|+|+
T Consensus 373 R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Ge---------l~vfdl 441 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGE---------LQVFDL 441 (888)
T ss_pred hhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCc---------eEEEEe
Confidence 44476666655444443 4678999999 568999888743 7889999999999999999997 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccc-ccccee-------E
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARE-RITRFK-------L 174 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~-~~~k~~-------~ 174 (823)
.... .+.+++.| . +.+++++.+||+.. +++|++|.+|++|+-.+..+ .+.+.+ .
T Consensus 442 aS~~----------l~Eti~AH--d---gaIWsi~~~pD~~g---~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 442 ASAS----------LVETIRAH--D---GAIWSISLSPDNKG---FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ehhh----------hhhhhhcc--c---cceeeeeecCCCCc---eEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 8532 34455543 2 44999999999999 99999999999998654333 122212 1
Q ss_pred EecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC-CeEEEEecC
Q 037368 175 QVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP-EAVYFYEVD 251 (823)
Q Consensus 175 ~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~-~~I~i~~~~ 251 (823)
..+-++.|.++++||||+ +|+++- +++|.+|-+++-. ..-.|-+|.-||.|+.+|||+.+++ |+. ..|++|..+
T Consensus 504 tLel~ddvL~v~~Spdgk--~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGK--LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEeccccEEEEEEcCCCc--EEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 234478899999999994 666664 6789999887532 3334558889999999999998765 554 499999876
Q ss_pred CCCccc-cccCC---eEEEEee-CcEEEEEEecCCCCccEEEEEeCCC--CEEEEeccccceeEE-EeecCcEEEEEcCC
Q 037368 252 GRGPCW-AFEGE---KKLLGWF-RGYLLCVIADQRNSKNIFNVYDLKN--RLIAHSLVVKEVSHM-LCEWGNIILVMTDK 323 (823)
Q Consensus 252 g~~~~~-~~~g~---~~~i~~~-~~ylv~~s~d~~~~~~~I~I~D~~~--~~i~~~~~i~~v~~v-~~~~~~~~vvs~~~ 323 (823)
=|-|. .+-+| ...+.+- +.|+.-.+. .|+.|+-||-+. ....+.++...++.. .++.|++.|.++.+
T Consensus 581 -FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g----KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 581 -FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG----KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred -cchhhhhhhcccCceeEEEEcccceeEEEec----CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC
Confidence 33442 22232 2222222 233333332 679999998754 222344555556654 56677777777777
Q ss_pred eEEEEeecChHH
Q 037368 324 SVLCIGEKDMES 335 (823)
Q Consensus 324 ~v~~l~~~~~~~ 335 (823)
.-+|+||++.+.
T Consensus 656 ~sIRlwE~tde~ 667 (888)
T KOG0306|consen 656 KSIRLWERTDEI 667 (888)
T ss_pred ceeEeeeccCcc
Confidence 889999877643
No 70
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=4.7e-12 Score=137.26 Aligned_cols=159 Identities=12% Similarity=0.174 Sum_probs=106.2
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
..|+++ .+..+.+|| .+|..+.+++||...|.+++++.+|+.+||+|.|.. |.||+-.-... =+-+++
T Consensus 25 sqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~---------VI~W~~klEG~-LkYSH~ 93 (1081)
T KOG1538|consen 25 TQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKS---------VIIWTSKLEGI-LKYSHN 93 (1081)
T ss_pred ceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCcee---------EEEecccccce-eeeccC
Confidence 455555 456799999 779999999999999999999999999999999997 99998542100 000111
Q ss_pred --CceEE-----------EEEeccCCCC----------CCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc
Q 037368 115 --PDCIG-----------ILRVFTSQFP----------EAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR 171 (823)
Q Consensus 115 --~~~~~-----------~~~~~~~~~p----------~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k 171 (823)
-+|.. ++.-|+.=.| ..+|.+++|..||++ +|.|..||+|.+-+.. ...|
T Consensus 94 D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqy---lalG~~nGTIsiRNk~----gEek 166 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQY---LALGMFNGTISIRNKN----GEEK 166 (1081)
T ss_pred CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcE---EEEeccCceEEeecCC----CCcc
Confidence 01110 1111100001 135999999999999 9999999999986421 1233
Q ss_pred eeEEec--CCCCcceEEEeecC---CeEEEEEEcC-CeEEEEEecCC
Q 037368 172 FKLQVD--NQCSVMGLGFRVDG---QALQLFAVTP-NSVILFSLQNQ 212 (823)
Q Consensus 172 ~~~~~~--~~~~It~l~fs~dg---~~~~l~~~t~-~~V~~~d~~~~ 212 (823)
.++-.. .++||++++|+|.. ...++.++.= .++..|.++++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 333332 37899999999863 2245666643 45777777764
No 71
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.67 E-value=1.7e-15 Score=165.29 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=160.4
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
+.+++|+.|++|.+|. .+..++.++++|+..|.+++...++. |+|+|.|.| +|||-...
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T---------akvW~~~~---------- 131 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST---------AKVWRIGE---------- 131 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc---------eEEecchh----------
Confidence 6799999999999999 66788999999999999999887776 999999998 99998763
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeE
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQAL 194 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~ 194 (823)
|..++. +++.+ |++|+.-|+. . +++|++|.+|++|+++ ...+++..|..-|++|++-+++ .
T Consensus 132 --l~~~l~--gH~as---VWAv~~l~e~-~---~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~~--~ 192 (745)
T KOG0301|consen 132 --LVYSLQ--GHTAS---VWAVASLPEN-T---YVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDDS--H 192 (745)
T ss_pred --hhcccC--Ccchh---eeeeeecCCC-c---EEeccCcceeeeccCC------chhhhhccchhheeeeEEecCC--C
Confidence 333333 22344 9999999987 7 9999999999999874 3445566678889999999886 5
Q ss_pred EEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-CCeEEEEecCCCCccccccCC-eEEEEee-C
Q 037368 195 QLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVDGRGPCWAFEGE-KKLLGWF-R 270 (823)
Q Consensus 195 ~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~g~~~~~~~~g~-~~~i~~~-~ 270 (823)
++.+++++.|+.|++++. ....+-+|..-++|+++..++.+++ ++ |.++++|+.+.-..+..+++. .....+. .
T Consensus 193 flScsNDg~Ir~w~~~ge--~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDLDGE--VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred eEeecCCceEEEEeccCc--eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeC
Confidence 788888888999999653 4455557778889998766555554 33 459999997744444555553 2233222 2
Q ss_pred cEEEEEEecCCCCccEEEEEeCC
Q 037368 271 GYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 271 ~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
.-+++++ .||.|+||...
T Consensus 271 gDIvvg~-----SDG~VrVfT~~ 288 (745)
T KOG0301|consen 271 GDIVVGG-----SDGRVRVFTVD 288 (745)
T ss_pred CCEEEec-----cCceEEEEEec
Confidence 3455555 36899999765
No 72
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.67 E-value=1e-13 Score=146.98 Aligned_cols=263 Identities=13% Similarity=0.158 Sum_probs=177.3
Q ss_pred eEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEe---ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 28 ITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQ---AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 28 is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~---~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
|.|+-+++ .++++.+.||+|.+|| .+|+.+..|. +|+++|..++|+||++.++|+|.|.+ +||||
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt---------~KIWd 263 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT---------IKIWD 263 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce---------EEEEE
Confidence 78888753 5889999999999999 8899888888 89999999999999999999999998 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
.... .+++++..... .-++.+-|+.- . .. |.+-+.+|++.+++.+ ...-.+++..++-+
T Consensus 264 Vs~~----------slv~t~~~~~~-v~dqqvG~lWq-k--d~---lItVSl~G~in~ln~~----d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 264 VSTN----------SLVSTWPMGST-VEDQQVGCLWQ-K--DH---LITVSLSGTINYLNPS----DPSVLKVISGHNKS 322 (603)
T ss_pred eecc----------ceEEEeecCCc-hhceEEEEEEe-C--Ce---EEEEEcCcEEEEeccc----CCChhheecccccc
Confidence 9843 36777654321 11122555543 3 36 8888889999999753 12234556677889
Q ss_pred cceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeCCeEEEEecCCCCcc---
Q 037368 182 VMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRPEAVYFYEVDGRGPC--- 256 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~~~I~i~~~~g~~~~--- 256 (823)
||+|..+++++ .++.++ ++.|.-|+..........-+.|...+.++..+..+. +.+|+|+++++.+..+++-.
T Consensus 323 ITaLtv~~d~~--~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 323 ITALTVSPDGK--TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred eeEEEEcCCCC--EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 99999999994 567666 556999998643222122256778888888877565 55789999999988765422
Q ss_pred -ccccCCeEEEEeeCc--EEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEEEeecCcEEEEEc-CCeEEEE
Q 037368 257 -WAFEGEKKLLGWFRG--YLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHMLCEWGNIILVMT-DKSVLCI 328 (823)
Q Consensus 257 -~~~~g~~~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v~~~~~~~~vvs~-~~~v~~l 328 (823)
..+...+.+++...+ ++++++. ..|.++.-.++...-...+....-.++++++.+++.. |++|...
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~------~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvy 470 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACI------SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVY 470 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEec------CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEE
Confidence 233334566666544 5555542 3455554333332222222221223566666666644 4454433
No 73
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=9.1e-14 Score=141.62 Aligned_cols=265 Identities=15% Similarity=0.133 Sum_probs=172.8
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
++-|++.+ .+.+++|+.|-.-++|+ .+|.....+.+|..+|+++.|+.+|.+|||++.+|. |+||...
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~---------v~v~~~s 136 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK---------VLVFKVS 136 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc---------EEEEEcc
Confidence 35455444 35679999999999999 788888889999999999999999999999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
+.. ....+. .+-..+-=+.|||.+.. ++.|+.||.|-.|+.. .+.-.+++..++.|++
T Consensus 137 tg~----------~~~~~~-----~e~~dieWl~WHp~a~i---llAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 137 TGG----------EQWKLD-----QEVEDIEWLKWHPRAHI---LLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCT 194 (399)
T ss_pred cCc----------eEEEee-----cccCceEEEEecccccE---EEeecCCCcEEEEECC----CcceeeEecCCCCCcc
Confidence 532 122221 11123677899999999 9999999999999864 1122334456688999
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc-cCCCccceecccCCCeEEEeeC------------CeEEEEec
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLELIIGRP------------EAVYFYEV 250 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~liv~~~------------~~I~i~~~ 250 (823)
+=.|.|+|+ .++....++.|++|+..+. ++...+. ..+.+..|+.++..+..++.++ +.|...+.
T Consensus 195 ~G~f~pdGK-r~~tgy~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 195 CGEFIPDGK-RILTGYDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred cccccCCCc-eEEEEecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecC
Confidence 999999996 3444445667999998754 3444442 2234455555554444333221 12222111
Q ss_pred CCCCc-----------c---------------------------------c--cccCCeEEEEeeC-cEEEEEEecCCCC
Q 037368 251 DGRGP-----------C---------------------------------W--AFEGEKKLLGWFR-GYLLCVIADQRNS 283 (823)
Q Consensus 251 ~g~~~-----------~---------------------------------~--~~~g~~~~i~~~~-~ylv~~s~d~~~~ 283 (823)
++++ | . ..+.....+.|.. .||++.+.
T Consensus 273 -~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~----- 346 (399)
T KOG0296|consen 273 -GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACA----- 346 (399)
T ss_pred -CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeecc-----
Confidence 0000 0 0 0111123466665 68887774
Q ss_pred ccEEEEEeCCCCEEEE--eccccc-eeEEEeecCcEEEEEcCCeEEEEee
Q 037368 284 KNIFNVYDLKNRLIAH--SLVVKE-VSHMLCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 284 ~~~I~I~D~~~~~i~~--~~~i~~-v~~v~~~~~~~~vvs~~~~v~~l~~ 330 (823)
+++|++||..++...+ .++-.. ..+++++..+++|-.++....++-+
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 5899999998765543 333333 3345677777777777665555443
No 74
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.66 E-value=1.5e-14 Score=151.40 Aligned_cols=272 Identities=11% Similarity=0.097 Sum_probs=182.4
Q ss_pred CeEEEeeCC---CEEEEEecCCeEEEEc-CC--Ceee--EeEe------ecc----cceeEEEEecCCCEEEEEecCCCC
Q 037368 27 NITCCSSGR---GKVVIGCDDGAVSLLD-RG--LKFN--FGFQ------AHS----SSVLFLQQLKQRNFLVTVGEDEQV 88 (823)
Q Consensus 27 ~is~~~~~~---~~l~~gs~dG~i~~~d-~~--~~~~--~~~~------~H~----~~V~~i~~~~~~~~l~s~s~D~~~ 88 (823)
+|.|++-.+ +.++.|+.+-+.++|+ .. +... ..|+ +++ ..|++++|+.+|+.|||+++||.
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~- 258 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE- 258 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE-
Confidence 365555432 4789999999999999 32 1111 1122 232 46999999999999999999997
Q ss_pred cccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccc
Q 037368 89 SAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARER 168 (823)
Q Consensus 89 ~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~ 168 (823)
++||+.... .+.++. .+..| |.++.|+.+|.+ |++|+.||++++|+.- .
T Consensus 259 --------~riw~~~G~-----------l~~tl~--~HkgP---I~slKWnk~G~y---ilS~~vD~ttilwd~~----~ 307 (524)
T KOG0273|consen 259 --------ARIWNKDGN-----------LISTLG--QHKGP---IFSLKWNKKGTY---ILSGGVDGTTILWDAH----T 307 (524)
T ss_pred --------EEEEecCch-----------hhhhhh--ccCCc---eEEEEEcCCCCE---EEeccCCccEEEEecc----C
Confidence 999998742 344443 23567 999999999999 9999999999999852 1
Q ss_pred ccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC-CeEE
Q 037368 169 ITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP-EAVY 246 (823)
Q Consensus 169 ~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~-~~I~ 246 (823)
+.-.+.+..++.|-..+.|-.+. .+....+++.|.+|.+..+. |..++.+|..+++++-|.|.|.++. +++ ++++
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred ceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 21112222234554667776654 35555566779999998764 7788888999999999999999765 454 4899
Q ss_pred EEecCCCCccccccCC---eEEEEee-----------CcEEEEEEecCCCCccEEEEEeCCCCEEEE--eccccceeEE-
Q 037368 247 FYEVDGRGPCWAFEGE---KKLLGWF-----------RGYLLCVIADQRNSKNIFNVYDLKNRLIAH--SLVVKEVSHM- 309 (823)
Q Consensus 247 i~~~~g~~~~~~~~g~---~~~i~~~-----------~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~--~~~i~~v~~v- 309 (823)
+|+......+..+.+| ...+.|. +..++.++ .+++|++||+......+ ..+-..|..+
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-----~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-----FDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-----cCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 9986522222233343 2334442 23455555 46899999998755433 3344445555
Q ss_pred EeecCcEEEEEcCCeEEEEeecChHHHHH
Q 037368 310 LCEWGNIILVMTDKSVLCIGEKDMESKLD 338 (823)
Q Consensus 310 ~~~~~~~~vvs~~~~v~~l~~~~~~~~i~ 338 (823)
|++.+......+-+..+.++.......++
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeE
Confidence 66666666666656677777655544333
No 75
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.66 E-value=1.5e-14 Score=165.92 Aligned_cols=275 Identities=12% Similarity=0.152 Sum_probs=177.0
Q ss_pred CeEEEeeCC--CEEEEEe--cCCeEEEEcCC-------------CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCc
Q 037368 27 NITCCSSGR--GKVVIGC--DDGAVSLLDRG-------------LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVS 89 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs--~dG~i~~~d~~-------------~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~ 89 (823)
+|.++..++ ..+++|+ .||.+.+|+.+ -+.+.+...|.+.|+|+.|+|+|++||+||+|..
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~-- 92 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL-- 92 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce--
Confidence 376666654 3678998 89999999832 1124456679999999999999999999999996
Q ss_pred ccccceeEEEEeCCCCCCC---CCCCCCC-----ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 90 AQQSAVCLKVFDLDKMEPE---GTSSTSP-----DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 90 ~~~~~~~vkvWdl~~~~~~---~~~~~~~-----~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
|.||........ +...+.+ .+..+++.|+ +.|..++|+|+++. +|+++.|++|++|+
T Consensus 93 -------v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Wsp~~~~---lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 93 -------VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWSPDDSL---LVSVSLDNSVIIWN 157 (942)
T ss_pred -------EEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccCCCccE---EEEecccceEEEEc
Confidence 999998741000 0001111 2455555332 44999999999999 99999999999998
Q ss_pred cccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEcc------CCCccceecccCC
Q 037368 162 GDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDN------IGCSTNSVAMSDR 234 (823)
Q Consensus 162 ~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~------~~~~~~~~~~s~~ 234 (823)
+. ...+.+++..+.+.|.|+.|.|-|+ ++++-+++ +|++|.+..-+ ..+.... ....+..+.||||
T Consensus 158 ~~----tF~~~~vl~~H~s~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~-i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 158 AK----TFELLKVLRGHQSLVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWG-IEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred cc----cceeeeeeecccccccceEECCccC--eeeeecCCceEEEEEcccce-eeEeeccchhhCCCcceeeecccCCC
Confidence 74 2245566677889999999999995 56666665 59999976533 2333321 1123456899999
Q ss_pred CeEEEeeC------CeEEEEecCCCCcc-ccccCC---eEEEEe-----------------eCcEEEEEEecCCCCccEE
Q 037368 235 LELIIGRP------EAVYFYEVDGRGPC-WAFEGE---KKLLGW-----------------FRGYLLCVIADQRNSKNIF 287 (823)
Q Consensus 235 ~~liv~~~------~~I~i~~~~g~~~~-~~~~g~---~~~i~~-----------------~~~ylv~~s~d~~~~~~~I 287 (823)
|+++++.. .++.+.+-+ .+.+ ..|=|| ...+.+ ...|.++++.. .|++|
T Consensus 231 G~~las~nA~n~~~~~~~IieR~-tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS---qDrSl 306 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERG-TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS---QDRSL 306 (942)
T ss_pred cCeecchhhccCCcceeEEEecC-CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec---CCccE
Confidence 99876421 356664432 2111 222233 112222 12454555443 68999
Q ss_pred EEEeCCCCE---EEEeccccceeEE-EeecC-cEEEEEcCCeEEEEe
Q 037368 288 NVYDLKNRL---IAHSLVVKEVSHM-LCEWG-NIILVMTDKSVLCIG 329 (823)
Q Consensus 288 ~I~D~~~~~---i~~~~~i~~v~~v-~~~~~-~~~vvs~~~~v~~l~ 329 (823)
.||...... +++.-.-.++..+ .+++| .+|+++-||.|..+.
T Consensus 307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 999874422 2222111123333 45555 488888899988885
No 76
>PTZ00420 coronin; Provisional
Probab=99.66 E-value=2e-14 Score=163.67 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=129.5
Q ss_pred CCeEEEeeCC---CEEEEEecCCeEEEEc-CCC--------eeeEeEeecccceeEEEEecCCCE-EEEEecCCCCcccc
Q 037368 26 GNITCCSSGR---GKVVIGCDDGAVSLLD-RGL--------KFNFGFQAHSSSVLFLQQLKQRNF-LVTVGEDEQVSAQQ 92 (823)
Q Consensus 26 ~~is~~~~~~---~~l~~gs~dG~i~~~d-~~~--------~~~~~~~~H~~~V~~i~~~~~~~~-l~s~s~D~~~~~~~ 92 (823)
..|.++++++ ..|++|+.||+|++|| +++ ..+..+.+|...|.+++|+|++.. |+|+|.|++
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt----- 149 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF----- 149 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe-----
Confidence 3588887753 5889999999999999 432 134468899999999999998865 589999998
Q ss_pred cceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce
Q 037368 93 SAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF 172 (823)
Q Consensus 93 ~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~ 172 (823)
|+|||+... ..+..+. + ..+ |++++|+|+|+. +|+|+.||+|++|+.. .+...
T Consensus 150 ----IrIWDl~tg----------~~~~~i~-~--~~~---V~SlswspdG~l---Lat~s~D~~IrIwD~R----sg~~i 202 (568)
T PTZ00420 150 ----VNIWDIENE----------KRAFQIN-M--PKK---LSSLKWNIKGNL---LSGTCVGKHMHIIDPR----KQEIA 202 (568)
T ss_pred ----EEEEECCCC----------cEEEEEe-c--CCc---EEEEEECCCCCE---EEEEecCCEEEEEECC----CCcEE
Confidence 999999843 2333333 1 223 999999999999 9999999999999862 12222
Q ss_pred eEEecCCCCcceE-----EEeecCCeEEEEEEcCC----eEEEEEecCCCCcceEEc--cCCCccceecccCCCeEE-Ee
Q 037368 173 KLQVDNQCSVMGL-----GFRVDGQALQLFAVTPN----SVILFSLQNQPPKRQFLD--NIGCSTNSVAMSDRLELI-IG 240 (823)
Q Consensus 173 ~~~~~~~~~It~l-----~fs~dg~~~~l~~~t~~----~V~~~d~~~~~~~~~~l~--~~~~~~~~~~~s~~~~li-v~ 240 (823)
..+..+.+.+.+. .|+++++ .++.++.++ +|++||++....+..... .....+.+....++|.++ +|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 2333445544433 3446653 344444443 599999985444544443 222222222224567755 45
Q ss_pred e-CCeEEEEecC
Q 037368 241 R-PEAVYFYEVD 251 (823)
Q Consensus 241 ~-~~~I~i~~~~ 251 (823)
. |+.|++|++.
T Consensus 282 kGD~tIr~~e~~ 293 (568)
T PTZ00420 282 KGDGNCRYYQHS 293 (568)
T ss_pred ECCCeEEEEEcc
Confidence 4 4589999986
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=2e-14 Score=143.73 Aligned_cols=254 Identities=18% Similarity=0.225 Sum_probs=166.6
Q ss_pred EEEEecCCeEEEEc----C---------CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 38 VVIGCDDGAVSLLD----R---------GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 38 l~~gs~dG~i~~~d----~---------~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
|++|+....|.=++ + +..++..|.+|.++|+++++ +|.++||+|.|.+ |+|||+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDet---------I~IYDm~k 72 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDET---------IHIYDMRK 72 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCc---------EEEEeccc
Confidence 56676666554443 1 12336678899999999999 6899999999998 99999986
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC--CcceEEEEEeCCeEEEEEcccccccccc-eeEEecCCCC
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP--PILLIAIGLDNGCIYCIKGDIARERITR-FKLQVDNQCS 181 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~--~~~~ia~G~~dG~V~l~~~~~~~~~~~k-~~~~~~~~~~ 181 (823)
.. .++++-.+ .+.|+++.|.++.+ . +.+|+.||.|.+|+.. .+. ...+..+.+.
T Consensus 73 ~~----------qlg~ll~H-----agsitaL~F~~~~S~sh---LlS~sdDG~i~iw~~~-----~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 73 RK----------QLGILLSH-----AGSITALKFYPPLSKSH---LLSGSDDGHIIIWRVG-----SWELLKSLKAHKGQ 129 (362)
T ss_pred hh----------hhcceecc-----ccceEEEEecCCcchhh---eeeecCCCcEEEEEcC-----CeEEeeeecccccc
Confidence 42 12333222 14499999999876 6 9999999999999853 111 2224456778
Q ss_pred cceEEEeecCCeEEEEEEcCCeEEEEEe-cCCCCcceEEccCCCccceecccCCCe-EEEeeCCeEEEEecCCCCccccc
Q 037368 182 VMGLGFRVDGQALQLFAVTPNSVILFSL-QNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRPEAVYFYEVDGRGPCWAF 259 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~~V~~~d~-~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~~~I~i~~~~g~~~~~~~ 259 (823)
||.|+..|.|+ ..|.++.+..++.|++ +++......+. .....+.|+|.|. |+++..+.|-+|..+.......+
T Consensus 130 Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i 205 (362)
T KOG0294|consen 130 VTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREI 205 (362)
T ss_pred cceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccC---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhh
Confidence 99999999996 4566667778999996 45543222222 2233478999775 88888889999987632211122
Q ss_pred cCC--eEEEEe-eCcEEEEEEecCCCCccEEEEEeCCCCE-----EEEeccccceeEEEeecCcEEEEEcCCeEEEEeec
Q 037368 260 EGE--KKLLGW-FRGYLLCVIADQRNSKNIFNVYDLKNRL-----IAHSLVVKEVSHMLCEWGNIILVMTDKSVLCIGEK 331 (823)
Q Consensus 260 ~g~--~~~i~~-~~~ylv~~s~d~~~~~~~I~I~D~~~~~-----i~~~~~i~~v~~v~~~~~~~~vvs~~~~v~~l~~~ 331 (823)
+.+ ..++.| .+.+++++.. +..|++||-+... .+|..++-++..+..+.+.+++..+.+..+++|..
T Consensus 206 ~~~~r~l~~~~l~~~~L~vG~d-----~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 206 ENPKRILCATFLDGSELLVGGD-----NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred hccccceeeeecCCceEEEecC-----CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 223 334444 4567777763 4799999988643 33444433333333333344444444447777777
Q ss_pred ChH
Q 037368 332 DME 334 (823)
Q Consensus 332 ~~~ 334 (823)
+.+
T Consensus 281 ~~~ 283 (362)
T KOG0294|consen 281 DME 283 (362)
T ss_pred ccc
Confidence 665
No 78
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=4.7e-15 Score=142.42 Aligned_cols=185 Identities=19% Similarity=0.210 Sum_probs=134.9
Q ss_pred eeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 32 SSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 32 ~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
.+....+++|+.|..|.+|| .+|+.++.|++|.+.|+.+.|..+...++|+|.|.+ +++||....
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s---------~r~wDCRS~----- 133 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS---------VRLWDCRSR----- 133 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce---------eEEEEcccC-----
Confidence 34556899999999999999 899999999999999999999999999999999998 999999853
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec-CCCCcceEEEee
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-NQCSVMGLGFRV 189 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-~~~~It~l~fs~ 189 (823)
++..++++.-+. ..|.+|.++.- . |+.|+.||+++.|+.. .+. .... -..||++++|++
T Consensus 134 ---s~ePiQildea~-----D~V~Si~v~~h--e---IvaGS~DGtvRtydiR----~G~---l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 134 ---SFEPIQILDEAK-----DGVSSIDVAEH--E---IVAGSVDGTVRTYDIR----KGT---LSSDYFGHPITSVSFSK 193 (307)
T ss_pred ---CCCccchhhhhc-----CceeEEEeccc--E---EEeeccCCcEEEEEee----cce---eehhhcCCcceeEEecC
Confidence 344455554221 23888888764 6 9999999999999852 121 1111 267999999999
Q ss_pred cCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC---CccceecccCCCeEE-Eee-CCeEEEEecCCC
Q 037368 190 DGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG---CSTNSVAMSDRLELI-IGR-PEAVYFYEVDGR 253 (823)
Q Consensus 190 dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~---~~~~~~~~s~~~~li-v~~-~~~I~i~~~~g~ 253 (823)
||+ ..|+.+-++.+++.|-++. ...+...+|. ..+.| +++.....+ .|+ |+.|++|+....
T Consensus 194 d~n-c~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc-~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 194 DGN-CSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDC-CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCC-EEEEeeccceeeecccchh-HHHHHhcccccceeeeee-eecccceeEEeccCCceEEEEEeccc
Confidence 995 4555555778999997643 2344443443 23444 444444444 444 358999998643
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.65 E-value=2.3e-14 Score=145.96 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=125.0
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
+.+|..|+++|-+++.+|+.++++|+|+|.. -.||++...+ ....+..|+ ..|+++
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~---------AflW~~~~ge----------~~~eltgHK-----DSVt~~ 112 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDL---------AFLWDISTGE----------FAGELTGHK-----DSVTCC 112 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCce---------EEEEEccCCc----------ceeEecCCC-----CceEEE
Confidence 4589999999999999999999999999997 8999998543 233444332 339999
Q ss_pred EEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCc
Q 037368 137 LVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPK 215 (823)
Q Consensus 137 a~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~ 215 (823)
.|+-||.+ +|+|..+|.|.+|+.. .+.-...+.+.-+.|.-|.|+|.+ .+|++++ ++.|+.|.+..+ ..
T Consensus 113 ~Fshdgtl---LATGdmsG~v~v~~~s----tg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~-~~ 182 (399)
T KOG0296|consen 113 SFSHDGTL---LATGDMSGKVLVFKVS----TGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQ-AL 182 (399)
T ss_pred EEccCceE---EEecCCCccEEEEEcc----cCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCc-ce
Confidence 99999999 9999999999999874 222122233334568888999987 4666665 456999999765 35
Q ss_pred ceEEccCCCccceecccCCCeEE-EeeC-CeEEEEecC
Q 037368 216 RQFLDNIGCSTNSVAMSDRLELI-IGRP-EAVYFYEVD 251 (823)
Q Consensus 216 ~~~l~~~~~~~~~~~~s~~~~li-v~~~-~~I~i~~~~ 251 (823)
.+++.+|+++++|=.|.|+|+.+ ++.+ ++|++|++.
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 68888999999998999999855 5554 589999986
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.1e-14 Score=140.60 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=154.8
Q ss_pred EeeCCCEEEEEecCCeEEEEc--CCC--eeeEeEeecccceeEEEEec--CCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 31 CSSGRGKVVIGCDDGAVSLLD--RGL--KFNFGFQAHSSSVLFLQQLK--QRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 31 ~~~~~~~l~~gs~dG~i~~~d--~~~--~~~~~~~~H~~~V~~i~~~~--~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
+-+.+.+|+||+.||+|+|+. .++ +++.++.||+++|+++.+.. -|++|||||.||. |.||.-..
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk---------VIiWke~~ 89 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK---------VIIWKEEN 89 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce---------EEEEecCC
Confidence 335678999999999999999 344 67889999999999999975 7899999999998 99998763
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc-eeEEecCCCCcc
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR-FKLQVDNQCSVM 183 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k-~~~~~~~~~~It 183 (823)
.. -.-......+ ++.|++|+|.|..- -+.+|+|+.||+|.+.+-+- +.++- .++..-+.-.|+
T Consensus 90 g~--------w~k~~e~~~h-----~~SVNsV~waphey-gl~LacasSDG~vsvl~~~~--~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 90 GR--------WTKAYEHAAH-----SASVNSVAWAPHEY-GLLLACASSDGKVSVLTYDS--SGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred Cc--------hhhhhhhhhh-----cccceeeccccccc-ceEEEEeeCCCcEEEEEEcC--CCCccchhhhhccccccc
Confidence 21 0001011111 13499999988652 24499999999999986431 11111 122233456699
Q ss_pred eEEEeec---CC----------eEEEEEEcCCeEEEEEecCCC-CcceEEccCCCccceecccCCC-----eEEEee-CC
Q 037368 184 GLGFRVD---GQ----------ALQLFAVTPNSVILFSLQNQP-PKRQFLDNIGCSTNSVAMSDRL-----ELIIGR-PE 243 (823)
Q Consensus 184 ~l~fs~d---g~----------~~~l~~~t~~~V~~~d~~~~~-~~~~~l~~~~~~~~~~~~s~~~-----~liv~~-~~ 243 (823)
+++|.|. |. ..++..++++.|.+|..+... ...++|.+|...++-++|.|.- .++.++ |+
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 9999875 20 023444567789999987543 3445688898889888888732 355444 56
Q ss_pred eEEEEecCCCCccc------cccCCeEEEEe--eCcEEEEEEecCCCCccEEEEEe
Q 037368 244 AVYFYEVDGRGPCW------AFEGEKKLLGW--FRGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 244 ~I~i~~~~g~~~~~------~~~g~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D 291 (823)
.+.+|..+.....+ .|+.....++| .|+.|.+.. .+..|++|-
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~-----GdNkvtlwk 284 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG-----GDNKVTLWK 284 (299)
T ss_pred cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec-----CCcEEEEEE
Confidence 89999876442221 23333445555 455554444 457899994
No 81
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.64 E-value=2e-14 Score=149.09 Aligned_cols=221 Identities=14% Similarity=0.175 Sum_probs=160.9
Q ss_pred cCCCCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEE
Q 037368 23 EVSGNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 23 ~~~~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
.+-+.|+++...+ +.+.+|+.|.++.++| ...+.+.+|+||+..|+.+.++|+...++++|.|.. |+|
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~---------i~v 287 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEI---------IRV 287 (506)
T ss_pred cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcce---------EEe
Confidence 3355677776544 7889999999999999 677888899999999999999999999999999997 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE-ec-
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ-VD- 177 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~-~~- 177 (823)
|..... ..|. .++.+ ..| |+.+..+|.|.+ +..++.||+..+.+.. .+....++ .+
T Consensus 288 ws~~~~-------s~~~---~~~~h--~~~---V~~ls~h~tgeY---llsAs~d~~w~Fsd~~----~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 288 WSVPLS-------SEPT---SSRPH--EEP---VTGLSLHPTGEY---LLSASNDGTWAFSDIS----SGSQLTVVSDET 345 (506)
T ss_pred eccccc-------cCcc---ccccc--ccc---ceeeeeccCCcE---EEEecCCceEEEEEcc----CCcEEEEEeecc
Confidence 998632 1222 22322 345 999999999999 9999999999887652 22222222 22
Q ss_pred CCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEE-EeeCC-eEEEEecCCCC
Q 037368 178 NQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGRPE-AVYFYEVDGRG 254 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~~~-~I~i~~~~g~~ 254 (823)
+.-.+++.+|+||| .++..++. +.|++||+.... ....|++|..++..+.|+++|.++ ++.++ .|++||.+.-.
T Consensus 346 s~v~~ts~~fHpDg--Lifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDG--LIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ccceeEEeeEcCCc--eEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 23569999999999 34444444 459999997643 456678899999999999999854 56665 59999987322
Q ss_pred c--cccccC----CeEEEEeeCcEEEEEE
Q 037368 255 P--CWAFEG----EKKLLGWFRGYLLCVI 277 (823)
Q Consensus 255 ~--~~~~~g----~~~~i~~~~~ylv~~s 277 (823)
. .+.++. ....+...|.|+++.+
T Consensus 423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred ccceeeccccccceeEEEcCCCCeEEeec
Confidence 1 122221 1223444578988875
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.64 E-value=2.5e-14 Score=139.55 Aligned_cols=229 Identities=14% Similarity=0.171 Sum_probs=158.6
Q ss_pred eCCCEEEEEecCCeEEEEcCC-Ceee--EeEeecccceeEEEEecC-CCEEEEEecCCCCcccccceeEEEEeCCCCCCC
Q 037368 33 SGRGKVVIGCDDGAVSLLDRG-LKFN--FGFQAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE 108 (823)
Q Consensus 33 ~~~~~l~~gs~dG~i~~~d~~-~~~~--~~~~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~ 108 (823)
..+..|+.|+.|+++.+|+.. .... -..++|++.|-+++++|. .+.|+|++.|.+ |++||....
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~---------ir~wd~r~~--- 97 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT---------IRIWDIRSG--- 97 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce---------EEEEEeccC---
Confidence 356799999999999999932 2222 246789999999999984 578999999998 999999843
Q ss_pred CCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 109 GTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
.|+..+... .+=.-++|+|+|.+ +|+|..|..|..++. +..+...-.+..-.+..+.|+
T Consensus 98 -------k~~~~i~~~------~eni~i~wsp~g~~---~~~~~kdD~it~id~-----r~~~~~~~~~~~~e~ne~~w~ 156 (313)
T KOG1407|consen 98 -------KCTARIETK------GENINITWSPDGEY---IAVGNKDDRITFIDA-----RTYKIVNEEQFKFEVNEISWN 156 (313)
T ss_pred -------cEEEEeecc------CcceEEEEcCCCCE---EEEecCcccEEEEEe-----cccceeehhcccceeeeeeec
Confidence 255444321 11355789999999 999999999998875 222222222334567888898
Q ss_pred ecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeCC-eEEEEecCCCCcc------ccc
Q 037368 189 VDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRPE-AVYFYEVDGRGPC------WAF 259 (823)
Q Consensus 189 ~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~~-~I~i~~~~g~~~~------~~~ 259 (823)
.++ .+.|.++. +.|.+..... -.+.+.+..|.....|+.|+|+|+ |++|++| .+-+||++. -.| +.+
T Consensus 157 ~~n--d~Fflt~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isRldw 232 (313)
T KOG1407|consen 157 NSN--DLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISRLDW 232 (313)
T ss_pred CCC--CEEEEecCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeeccccC
Confidence 665 45555555 4455554432 135666777877667788999997 6788877 567999873 223 122
Q ss_pred cCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccc
Q 037368 260 EGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV 303 (823)
Q Consensus 260 ~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i 303 (823)
+.....++.+|.||+++| +|..|-|=+++++...+....
T Consensus 233 pVRTlSFS~dg~~lASaS-----EDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASAS-----EDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred ceEEEEeccCcceeeccC-----ccceEEeEecccCCeEEEeec
Confidence 223345566788999888 468898888888776665443
No 83
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.63 E-value=8e-15 Score=145.78 Aligned_cols=257 Identities=14% Similarity=0.166 Sum_probs=173.6
Q ss_pred CEEEEEecCCeEEEEcCC-------------C------eeeEeEeecccceeEEEEecCCCEEEEEecCCCCccccccee
Q 037368 36 GKVVIGCDDGAVSLLDRG-------------L------KFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVC 96 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~-------------~------~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~ 96 (823)
..+++|+.|-.|+|+|-. | -++++|--|...|+++.|+|...+|+|+|.|++
T Consensus 125 ~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t--------- 195 (430)
T KOG0640|consen 125 SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT--------- 195 (430)
T ss_pred cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe---------
Confidence 467999999999999821 1 147888889999999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE-
Q 037368 97 LKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ- 175 (823)
Q Consensus 97 vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~- 175 (823)
||++|+.+.. .-+.++++....| |.++.|||.|.. +++|+.--++++|+... -+..+
T Consensus 196 vKlFDfsK~s----------aKrA~K~~qd~~~---vrsiSfHPsGef---llvgTdHp~~rlYdv~T------~Qcfvs 253 (430)
T KOG0640|consen 196 VKLFDFSKTS----------AKRAFKVFQDTEP---VRSISFHPSGEF---LLVGTDHPTLRLYDVNT------YQCFVS 253 (430)
T ss_pred EEEEecccHH----------HHHHHHHhhccce---eeeEeecCCCce---EEEecCCCceeEEeccc------eeEeee
Confidence 9999998631 2223344433567 999999999999 99999999999998741 11111
Q ss_pred ----ecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEE-ccCC-CccceecccCCCeEEEee--CCeEE
Q 037368 176 ----VDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFL-DNIG-CSTNSVAMSDRLELIIGR--PEAVY 246 (823)
Q Consensus 176 ----~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l-~~~~-~~~~~~~~s~~~~liv~~--~~~I~ 246 (823)
-++.+.|+.+.+++.|+ +-..++ ++.|++||--.. .+..++ ..|| ..+.+..|+.+|+++.++ |..++
T Consensus 254 anPd~qht~ai~~V~Ys~t~~--lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGS--LYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred cCcccccccceeEEEecCCcc--EEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 12468999999999983 333334 445999994322 244444 3454 456566788999988654 35899
Q ss_pred EEecCCCCccccccCC--------eEE--EEeeCcEEEEEEecCCCCccEEEEEeCCCCEEE--Ee-ccccceeEE-Eee
Q 037368 247 FYEVDGRGPCWAFEGE--------KKL--LGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIA--HS-LVVKEVSHM-LCE 312 (823)
Q Consensus 247 i~~~~g~~~~~~~~g~--------~~~--i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~--~~-~~i~~v~~v-~~~ 312 (823)
+|.+..........|. .+. +.-..+|++.- |. ..+.+.-||..+.... ++ ++-..++.+ .++
T Consensus 331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p--DE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP--DE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcc--cc--ccCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence 9998632222222221 111 22235677644 32 3478999998764321 11 122225554 567
Q ss_pred cCcEEEEEcCCeEEEEee
Q 037368 313 WGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 313 ~~~~~vvs~~~~v~~l~~ 330 (823)
.+..|+-++++.-.|.|-
T Consensus 407 ~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceeeecccceeeeee
Confidence 778888888887777764
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.5e-15 Score=143.55 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=137.8
Q ss_pred eEEEeeC---CCEEEEEecCCeEEEEcCC-CeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 28 ITCCSSG---RGKVVIGCDDGAVSLLDRG-LKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 28 is~~~~~---~~~l~~gs~dG~i~~~d~~-~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
|-++--+ +..++++|-||+|++|+.+ .+-+.+|++|...|.+..|+| .+++++|+|.|++ +++||+
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~---------l~lwdv 177 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT---------LRLWDV 177 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce---------EEEEEe
Confidence 5444433 3467888999999999944 567789999999999999999 6789999999998 999998
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEccccccccccee--EEecCC
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITRFK--LQVDNQ 179 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~--~~~~~~ 179 (823)
+.. |.+ + .+..+. .+|.|+.|+. +-.. +|+|+.|+.|+.||.. ..+.. .+..+.
T Consensus 178 r~~-------gk~--~-~i~ah~-----~Eil~cdw~ky~~~v---l~Tg~vd~~vr~wDir-----~~r~pl~eL~gh~ 234 (311)
T KOG0277|consen 178 RSP-------GKF--M-SIEAHN-----SEILCCDWSKYNHNV---LATGGVDNLVRGWDIR-----NLRTPLFELNGHG 234 (311)
T ss_pred cCC-------Cce--e-EEEecc-----ceeEeecccccCCcE---EEecCCCceEEEEehh-----hccccceeecCCc
Confidence 742 222 2 244432 3499999986 3356 9999999999999863 22222 234456
Q ss_pred CCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccC--CCeEE-EeeCCeEEEEec
Q 037368 180 CSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD--RLELI-IGRPEAVYFYEV 250 (823)
Q Consensus 180 ~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~--~~~li-v~~~~~I~i~~~ 250 (823)
-.|..++|||... .+|+.++ +.++++|+.........+.+.|..-+.-+.||+ .++++ +|||+.+++|++
T Consensus 235 ~AVRkvk~Sph~~-~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHA-SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchh-hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 7899999999753 4566665 568999998643334444455554444466775 56676 589999999985
No 85
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.6e-14 Score=141.06 Aligned_cols=239 Identities=16% Similarity=0.210 Sum_probs=148.7
Q ss_pred EeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEE
Q 037368 58 FGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFL 137 (823)
Q Consensus 58 ~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va 137 (823)
..+++|.+.|++++|+++|+.||||+.|++ |+||+++...+ ...+|+|. .+ ...+ .+.|+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~---------Ir~w~~~DF~~-----~eHr~~R~-nv-e~dh----pT~V~ 139 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRS---------IRLWDVRDFEN-----KEHRCIRQ-NV-EYDH----PTRVV 139 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCce---------EEEEecchhhh-----hhhhHhhc-cc-cCCC----ceEEE
Confidence 468899999999999999999999999998 99999986531 11124432 11 1123 69999
Q ss_pred EecCCCCcceEEEEEeCC-eEEEEEcccccccccceeEEe-c-------CCCCcceEEEeecCCeEEEEEEc-CCeEEEE
Q 037368 138 VLEEAPPILLIAIGLDNG-CIYCIKGDIARERITRFKLQV-D-------NQCSVMGLGFRVDGQALQLFAVT-PNSVILF 207 (823)
Q Consensus 138 ~~~d~~~~~~ia~G~~dG-~V~l~~~~~~~~~~~k~~~~~-~-------~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~ 207 (823)
|.||.+. +++...+| ++.+|..+--.+.+.....+. + +.-+|-++....++ .++..++ ++.|.+|
T Consensus 140 FapDc~s---~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~--k~imsas~dt~i~lw 214 (420)
T KOG2096|consen 140 FAPDCKS---VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA--KYIMSASLDTKICLW 214 (420)
T ss_pred ECCCcce---EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc--eEEEEecCCCcEEEE
Confidence 9999877 77666655 567775321111111011111 1 23455555555555 3455454 5679999
Q ss_pred EecCCCCcceEEccCCCccceecccCCCeEEEeeC--CeEEEEec----CCC----CccccccCCeEEEEe-----eCcE
Q 037368 208 SLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEV----DGR----GPCWAFEGEKKLLGW-----FRGY 272 (823)
Q Consensus 208 d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~----~g~----~~~~~~~g~~~~i~~-----~~~y 272 (823)
++.++ .....+.......-++.||+|+|+++.+ --|++|.+ +|. ...+.+.||+..+.| ....
T Consensus 215 ~lkGq--~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 215 DLKGQ--LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred ecCCc--eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 99753 4455543333334567899999998765 35888875 232 123567888654333 3568
Q ss_pred EEEEEecCCCCccEEEEEeCCCCEEEEec---------ccc----c-eeEEEeecCcEEEEEcCCeEEEE
Q 037368 273 LLCVIADQRNSKNIFNVYDLKNRLIAHSL---------VVK----E-VSHMLCEWGNIILVMTDKSVLCI 328 (823)
Q Consensus 273 lv~~s~d~~~~~~~I~I~D~~~~~i~~~~---------~i~----~-v~~v~~~~~~~~vvs~~~~v~~l 328 (823)
++++|. ||+++|||.+-++-.-+. .+. . ++--+++.|+++.++....+..+
T Consensus 293 ~vtvSk-----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 293 AVTVSK-----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred eEEEec-----CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 888884 589999998765533221 111 1 33347788888888765555444
No 86
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.8e-14 Score=161.55 Aligned_cols=184 Identities=14% Similarity=0.142 Sum_probs=131.6
Q ss_pred eCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 33 SGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 33 ~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
+..++|+++|.|.||++|+ ...+++++|. |..-|+||+|+| |.++++|||-|+. ||||++....
T Consensus 378 SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~K---------vRiWsI~d~~---- 443 (712)
T KOG0283|consen 378 SKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGK---------VRLWSISDKK---- 443 (712)
T ss_pred ccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccc---------eEEeecCcCe----
Confidence 3457999999999999999 4567888886 999999999999 7789999999998 9999997421
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE---E--ec----CCCC
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL---Q--VD----NQCS 181 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~---~--~~----~~~~ 181 (823)
.+ .-.+-. .-||+++|.|||+. .++|+-+|..++|+.. +.+... + .. ....
T Consensus 444 ------Vv---~W~Dl~---~lITAvcy~PdGk~---avIGt~~G~C~fY~t~-----~lk~~~~~~I~~~~~Kk~~~~r 503 (712)
T KOG0283|consen 444 ------VV---DWNDLR---DLITAVCYSPDGKG---AVIGTFNGYCRFYDTE-----GLKLVSDFHIRLHNKKKKQGKR 503 (712)
T ss_pred ------eE---eehhhh---hhheeEEeccCCce---EEEEEeccEEEEEEcc-----CCeEEEeeeEeeccCccccCce
Confidence 11 111101 22999999999999 9999999999999742 222111 1 11 1237
Q ss_pred cceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC--CccceecccCCCeEEE-eeCC-eEEEEecC
Q 037368 182 VMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG--CSTNSVAMSDRLELII-GRPE-AVYFYEVD 251 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~--~~~~~~~~s~~~~liv-~~~~-~I~i~~~~ 251 (823)
|||+.|.|.....+|.+++|++|++||...+. +...|.+.. .......|+.||+.|| +++| .|++|+.+
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 99999987653236666677889999986543 333443221 1223457778998776 4544 89999964
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.61 E-value=9.5e-14 Score=146.77 Aligned_cols=286 Identities=13% Similarity=0.098 Sum_probs=180.1
Q ss_pred CCC-eEEEeeC--CCEEEEEecCCeEEEEcCCC-e-eeEeEee----cccceeEEEEecCCCEEEEEecCCCCcccccce
Q 037368 25 SGN-ITCCSSG--RGKVVIGCDDGAVSLLDRGL-K-FNFGFQA----HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 25 ~~~-is~~~~~--~~~l~~gs~dG~i~~~d~~~-~-~~~~~~~----H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~ 95 (823)
+.+ |++.+.. +..+++|+-|-+|++||-.| . -.+.|+. -+..|.++.+++.|+.++.++....
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq-------- 237 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ-------- 237 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc--------
Confidence 444 5777764 35899999999999999322 1 1223432 2357999999999988887776666
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ 175 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~ 175 (823)
.||.|-+......-..|. +-++.+.. ..++. +.++|.+|+|+.+. .+.+.+.||++++|+++-. +. ..+++
T Consensus 238 -akl~DRdG~~~~e~~KGD-QYI~Dm~n-TKGHi-a~lt~g~whP~~k~--~FlT~s~DgtlRiWdv~~~--k~-q~qVi 308 (641)
T KOG0772|consen 238 -AKLLDRDGFEIVEFSKGD-QYIRDMYN-TKGHI-AELTCGCWHPDNKE--EFLTCSYDGTLRIWDVNNT--KS-QLQVI 308 (641)
T ss_pred -eeEEccCCceeeeeeccc-hhhhhhhc-cCCce-eeeeccccccCccc--ceEEecCCCcEEEEecCCc--hh-heeEE
Confidence 999998754210000000 00111110 01111 34999999998643 2777788999999998521 11 12222
Q ss_pred e---c--CCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCC-Ccc-eEEccC--CCccceecccCCCeEEEee--CC
Q 037368 176 V---D--NQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQP-PKR-QFLDNI--GCSTNSVAMSDRLELIIGR--PE 243 (823)
Q Consensus 176 ~---~--~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~-~~~-~~l~~~--~~~~~~~~~s~~~~liv~~--~~ 243 (823)
. . ..-++++.+|++||+ .+++++ ++.|.+|+..+.. .+. .+-+.| |..+.|++||+||+.+.++ |+
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~--~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGK--LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred eeccCCCcccCceeeecCCCcc--hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 2 1 145899999999995 455555 5569999985433 122 222445 4488999999999987765 57
Q ss_pred eEEEEecCCCCcc-ccc-------cCCeEEEEeeCcEEEEEEecCC-CCccEEEEEeCCCCEEEEeccccceeEEEeec-
Q 037368 244 AVYFYEVDGRGPC-WAF-------EGEKKLLGWFRGYLLCVIADQR-NSKNIFNVYDLKNRLIAHSLVVKEVSHMLCEW- 313 (823)
Q Consensus 244 ~I~i~~~~g~~~~-~~~-------~g~~~~i~~~~~ylv~~s~d~~-~~~~~I~I~D~~~~~i~~~~~i~~v~~v~~~~- 313 (823)
++++|+++--..+ ..+ .+...++++....|++++...+ ...+++..||..+=.+.+...+....-+-..|
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 9999998733322 232 3334566777677777654332 23568999998876677766666522222334
Q ss_pred ---CcEEEEEcCCeEEEEe
Q 037368 314 ---GNIILVMTDKSVLCIG 329 (823)
Q Consensus 314 ---~~~~vvs~~~~v~~l~ 329 (823)
+++++-+.+|.+..+-
T Consensus 467 pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred chhhheeeecCCCceEEEE
Confidence 4688888888777764
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.61 E-value=8.5e-15 Score=141.68 Aligned_cols=260 Identities=11% Similarity=0.080 Sum_probs=189.2
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
+|++++.||.=-+-+ .+|.-+-+|.+|.+.|+..+...+....||++.|-| -||||.-+.+
T Consensus 31 flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadft---------akvw~a~tgd--------- 92 (334)
T KOG0278|consen 31 FLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFT---------AKVWDAVTGD--------- 92 (334)
T ss_pred EEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccch---------hhhhhhhhhh---------
Confidence 678999999877777 668888999999999999999888888899999998 9999987543
Q ss_pred ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEE
Q 037368 116 DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 116 ~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~ 195 (823)
.++++. +.+- |.++||+.|... +.+|+.+.-+++|+.+ +. ...+.-+..+.+.|..+-|....+ .+
T Consensus 93 -elhsf~---hkhi---vk~~af~~ds~~---lltgg~ekllrvfdln--~p-~App~E~~ghtg~Ir~v~wc~eD~-~i 158 (334)
T KOG0278|consen 93 -ELHSFE---HKHI---VKAVAFSQDSNY---LLTGGQEKLLRVFDLN--RP-KAPPKEISGHTGGIRTVLWCHEDK-CI 158 (334)
T ss_pred -hhhhhh---hhhe---eeeEEecccchh---hhccchHHHhhhhhcc--CC-CCCchhhcCCCCcceeEEEeccCc-eE
Confidence 233332 2333 999999999999 9999988888888753 11 111223445678899999977664 45
Q ss_pred EEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeCCeEEEEecCCCCccccccCC----eEEEEeeC
Q 037368 196 LFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRPEAVYFYEVDGRGPCWAFEGE----KKLLGWFR 270 (823)
Q Consensus 196 l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~~~I~i~~~~g~~~~~~~~g~----~~~i~~~~ 270 (823)
|.++.+.+|++||..+.. ..+.+. ...++.++-.+++|++++ +-+++|.+|++..=+....++.+ ..++.+.+
T Consensus 159 LSSadd~tVRLWD~rTgt-~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGT-EVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK 236 (334)
T ss_pred EeeccCCceEEEEeccCc-EEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence 555556679999987643 344443 446688888999999775 66679999998743333233332 23566666
Q ss_pred cEEEEEEecCCCCccEEEEEeCCCCE-EE-E-eccccceeEE-EeecCcEEEEEcCCeEEEEeecChHH
Q 037368 271 GYLLCVIADQRNSKNIFNVYDLKNRL-IA-H-SLVVKEVSHM-LCEWGNIILVMTDKSVLCIGEKDMES 335 (823)
Q Consensus 271 ~ylv~~s~d~~~~~~~I~I~D~~~~~-i~-~-~~~i~~v~~v-~~~~~~~~vvs~~~~v~~l~~~~~~~ 335 (823)
...|++. ++..+..||..++. |+ | +++...|..+ |+++|..|.+.+.+..+|||......
T Consensus 237 ~~fVaGg-----ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 237 EFFVAGG-----EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceEEecC-----cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 6666665 56899999997653 43 3 4566666666 89999999999988888998665543
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.60 E-value=6.1e-14 Score=137.25 Aligned_cols=272 Identities=10% Similarity=0.031 Sum_probs=181.2
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
|+-+-.. ++.|++|+.|.+..+|- .+|+.+-++.||++.|+++.++-+.+.|+|+|.|.+ +|+||...
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t---------~kLWDv~t 83 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQT---------AKLWDVET 83 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccce---------eEEEEcCC
Confidence 5556554 46889999999999999 599999999999999999999999999999999998 99999984
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-----CCeEEEEEccccc-ccccc--eeEEe
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-----NGCIYCIKGDIAR-ERITR--FKLQV 176 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-----dG~V~l~~~~~~~-~~~~k--~~~~~ 176 (823)
. .++.+++. ..| |..+.|+++++. +++.+. .+.|.+++..... +.... ...+.
T Consensus 84 G----------k~la~~k~---~~~---Vk~~~F~~~gn~---~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 84 G----------KQLATWKT---NSP---VKRVDFSFGGNL---ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred C----------cEEEEeec---CCe---eEEEeeccCCcE---EEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 3 36666653 245 999999999987 665543 3567888752100 00111 22234
Q ss_pred cCCCCcceEEEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeC-CeEEEEecCCC
Q 037368 177 DNQCSVMGLGFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRP-EAVYFYEVDGR 253 (823)
Q Consensus 177 ~~~~~It~l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~-~~I~i~~~~g~ 253 (823)
.++..||..-|+|.++ .++.+ .++.|..||..........-+.|+..++.+.++++.. |++++. .+-++||+..-
T Consensus 145 t~~skit~a~Wg~l~~--~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGE--TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CCccceeeeeecccCC--EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 4568899999999884 44444 4567999999864334444456888899999999886 566654 58899998632
Q ss_pred Ccc--ccccCC--eEEEEeeCcEEEEEEecCC---------CCccEEEEEeCCC-CEE-EEeccccceeEE-EeecCcEE
Q 037368 254 GPC--WAFEGE--KKLLGWFRGYLLCVIADQR---------NSKNIFNVYDLKN-RLI-AHSLVVKEVSHM-LCEWGNII 317 (823)
Q Consensus 254 ~~~--~~~~g~--~~~i~~~~~ylv~~s~d~~---------~~~~~I~I~D~~~-~~i-~~~~~i~~v~~v-~~~~~~~~ 317 (823)
... +.-+-+ ...+.+..+++|++..... ...-.-+-|++-. ..+ ..+.++..+..+ ++++|.-|
T Consensus 223 ~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY 302 (327)
T KOG0643|consen 223 EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY 302 (327)
T ss_pred eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc
Confidence 111 222222 3456677788888754311 0001122222210 011 123333333333 78889888
Q ss_pred EEEcCCeEEEEe
Q 037368 318 LVMTDKSVLCIG 329 (823)
Q Consensus 318 vvs~~~~v~~l~ 329 (823)
.....+.-+|+.
T Consensus 303 sSGGEDG~VR~h 314 (327)
T KOG0643|consen 303 SSGGEDGYVRLH 314 (327)
T ss_pred ccCCCCceEEEE
Confidence 887766677776
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.60 E-value=4.7e-14 Score=144.26 Aligned_cols=191 Identities=12% Similarity=0.081 Sum_probs=146.2
Q ss_pred eEEEee--CCCEEEEEecCCeEEEEc--CC------------------------CeeeEeEeecccceeEEEEecCCCEE
Q 037368 28 ITCCSS--GRGKVVIGCDDGAVSLLD--RG------------------------LKFNFGFQAHSSSVLFLQQLKQRNFL 79 (823)
Q Consensus 28 is~~~~--~~~~l~~gs~dG~i~~~d--~~------------------------~~~~~~~~~H~~~V~~i~~~~~~~~l 79 (823)
|-|+.+ ++..+++||.|.+|.+|+ .+ ..++-++.||+.+|.++.|++ ...+
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 666664 346889999999999998 11 123457889999999999976 7889
Q ss_pred EEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEE
Q 037368 80 VTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYC 159 (823)
Q Consensus 80 ~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l 159 (823)
.|+|.|.| ||+||+.... +..++.. ..+ .+|++.+|.... +|+|+.|..++|
T Consensus 275 yS~SwDHT---------Ik~WDletg~----------~~~~~~~---~ks---l~~i~~~~~~~L---l~~gssdr~irl 326 (423)
T KOG0313|consen 275 YSVSWDHT---------IKVWDLETGG----------LKSTLTT---NKS---LNCISYSPLSKL---LASGSSDRHIRL 326 (423)
T ss_pred Eeecccce---------EEEEEeeccc----------ceeeeec---Ccc---eeEeecccccce---eeecCCCCceee
Confidence 99999999 9999998532 3334331 123 999999999999 999999999999
Q ss_pred EEcccccccccce--eEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeE
Q 037368 160 IKGDIARERITRF--KLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLEL 237 (823)
Q Consensus 160 ~~~~~~~~~~~k~--~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~l 237 (823)
||.. .++.+. ..+..+++-|.++.|+|.....++.++.++++++||++....+...+.+|+..+-|+.|+..+-+
T Consensus 327 ~DPR---~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~I 403 (423)
T KOG0313|consen 327 WDPR---TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLI 403 (423)
T ss_pred cCCC---CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceE
Confidence 9973 223222 22446788999999999874233444457889999998655577888889999999999887778
Q ss_pred EEeeCC-eEEEEec
Q 037368 238 IIGRPE-AVYFYEV 250 (823)
Q Consensus 238 iv~~~~-~I~i~~~ 250 (823)
+.|+.| .|+++..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 877654 8998853
No 91
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.59 E-value=1.1e-14 Score=153.16 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=163.3
Q ss_pred eeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceE
Q 037368 56 FNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKIT 134 (823)
Q Consensus 56 ~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~ 134 (823)
.+.+|.+|+..|+++.|.| .+.+|+|+|.|+. |+||++.. ...|++++..| ..| |.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~---------vklW~vy~---------~~~~lrtf~gH--~k~---Vr 262 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGL---------VKLWNVYD---------DRRCLRTFKGH--RKP---VR 262 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCce---------EEEEEEec---------Ccceehhhhcc--hhh---hh
Confidence 4678999999999999999 8899999999998 99999974 23589888755 345 99
Q ss_pred EEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCC
Q 037368 135 SFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPP 214 (823)
Q Consensus 135 ~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~ 214 (823)
.++|+++|+. +.+++-|+.|++||.. +| +...-+....+++++.|.|++...+|+.+++++|+.||++.. .
T Consensus 263 d~~~s~~g~~---fLS~sfD~~lKlwDtE----TG-~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-k 333 (503)
T KOG0282|consen 263 DASFNNCGTS---FLSASFDRFLKLWDTE----TG-QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-K 333 (503)
T ss_pred hhhccccCCe---eeeeecceeeeeeccc----cc-eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-H
Confidence 9999999999 8888889999999964 33 222334456789999999998424455556778999999864 2
Q ss_pred cceEEccCCCccceecccCCC-eEEEeeCC-eEEEEecCCCCcc-cc-----ccCCeEEEEeeCcEEEEEEecCCCCccE
Q 037368 215 KRQFLDNIGCSTNSVAMSDRL-ELIIGRPE-AVYFYEVDGRGPC-WA-----FEGEKKLLGWFRGYLLCVIADQRNSKNI 286 (823)
Q Consensus 215 ~~~~l~~~~~~~~~~~~s~~~-~liv~~~~-~I~i~~~~g~~~~-~~-----~~g~~~~i~~~~~ylv~~s~d~~~~~~~ 286 (823)
..+..+.|-..++.++|-|+| +|+.++++ ++++|+.+-.-+. +. +..+...+.+++.++++-+- +..
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~-----dN~ 408 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM-----DNY 408 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc-----Cce
Confidence 455555665667778888876 48877765 8999986522111 11 11123456667777776653 467
Q ss_pred EEEEeCCCCE-----EEEeccccc---eeEEEeecCcEEEEEc-CCeEEE
Q 037368 287 FNVYDLKNRL-----IAHSLVVKE---VSHMLCEWGNIILVMT-DKSVLC 327 (823)
Q Consensus 287 I~I~D~~~~~-----i~~~~~i~~---v~~v~~~~~~~~vvs~-~~~v~~ 327 (823)
|.|+....++ -.|.++... +.--|+++|++++.+. +|.++.
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 7777654432 223332222 2223888888777644 454443
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-13 Score=150.14 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=177.4
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
+.+++|. .-.|.+|+ .++....-+.-+...|+++.++++|++|+.+-.+|+ |.|||.....
T Consensus 189 n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~---------v~iwD~~~~k-------- 250 (484)
T KOG0305|consen 189 NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGT---------VQIWDVKEQK-------- 250 (484)
T ss_pred CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCe---------EEEEehhhcc--------
Confidence 4667764 44699999 667766556666899999999999999999999998 9999998532
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeE
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQAL 194 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~ 194 (823)
.++++... +. +.|.+++|.. .. +.+|+.+|.|..++... ......++..+...|.+++|++|++
T Consensus 251 --~~~~~~~~---h~-~rvg~laW~~--~~---lssGsr~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~-- 314 (484)
T KOG0305|consen 251 --KTRTLRGS---HA-SRVGSLAWNS--SV---LSSGSRDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGN-- 314 (484)
T ss_pred --ccccccCC---cC-ceeEEEeccC--ce---EEEecCCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCC--
Confidence 34444431 11 4499999984 47 99999999999997632 1111122445678899999999994
Q ss_pred EEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccC--CCeEEEeeC---CeEEEEecCCCCccc-cc-cC-CeEE
Q 037368 195 QLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD--RLELIIGRP---EAVYFYEVDGRGPCW-AF-EG-EKKL 265 (823)
Q Consensus 195 ~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~--~~~liv~~~---~~I~i~~~~g~~~~~-~~-~g-~~~~ 265 (823)
.++.+ +++.+.+||.... .++..+.+|...|..++|+| .|-+++|++ .+|++|++. .+.++ .+ .| ....
T Consensus 315 ~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~-~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN-TGARIDSVDTGSQVCS 392 (484)
T ss_pred eeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC-CCcEecccccCCceee
Confidence 45555 5677999998543 46777888999999999998 566777754 489999987 33332 22 22 3667
Q ss_pred EEeeCcE--EEEEEecCCCCccEEEEEeCCCCE--EEEeccccceeEE-EeecCcEEEEEcCCeEEEEe
Q 037368 266 LGWFRGY--LLCVIADQRNSKNIFNVYDLKNRL--IAHSLVVKEVSHM-LCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 266 i~~~~~y--lv~~s~d~~~~~~~I~I~D~~~~~--i~~~~~i~~v~~v-~~~~~~~~vvs~~~~v~~l~ 329 (823)
+.|.+.| +++...- ....|.||+..... .....+-..|.++ .+++|..+++++.+..++++
T Consensus 393 L~Wsk~~kEi~sthG~---s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGY---SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred EEEcCCCCEEEEecCC---CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEec
Confidence 8998776 6655432 34689999885422 2233333335554 67777766666655555655
No 93
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.4e-13 Score=137.47 Aligned_cols=243 Identities=14% Similarity=0.257 Sum_probs=153.8
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
..||.++ +.+||+|..+|.|-+|| .++.+-+.+.||..+|++++|+++|..|+|+|.|.. |++||+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s---------i~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS---------IKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce---------eEEEeccC
Confidence 6666665 46899999999999999 778888899999999999999999999999999997 99999986
Q ss_pred CCCC------C---CCCCCC----ceEEEE-------Eecc-CC------CCC----CceEEEEEecCCCCcceEEEEEe
Q 037368 105 MEPE------G---TSSTSP----DCIGIL-------RVFT-SQ------FPE----AKITSFLVLEEAPPILLIAIGLD 153 (823)
Q Consensus 105 ~~~~------~---~~~~~~----~~~~~~-------~~~~-~~------~p~----~~v~~va~~~d~~~~~~ia~G~~ 153 (823)
+... + +..-.| .|+.++ -.++ .. .++ ....+..|++.|.+ |.+|.+
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y---IitGts 173 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY---IITGTS 173 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE---EEEecC
Confidence 5310 0 000000 111110 0010 00 001 12445567888888 999999
Q ss_pred CCeEEEEEcccccccccceeEE--ecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC-----CC-C--cceEEcc--
Q 037368 154 NGCIYCIKGDIARERITRFKLQ--VDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN-----QP-P--KRQFLDN-- 221 (823)
Q Consensus 154 dG~V~l~~~~~~~~~~~k~~~~--~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~-----~~-~--~~~~l~~-- 221 (823)
.|.+.+++... .+.... ...-..|..|-|+..|. .+++-+++..|+.|++.. +. . +.+.+.+
T Consensus 174 KGkllv~~a~t-----~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 174 KGKLLVYDAET-----LECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred cceEEEEecch-----heeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 99999998641 111111 11235788999998884 344545555699999752 11 1 1111110
Q ss_pred CCCccceecccCCCeEEEeeC---CeEEEEecCCCCcc-ccccCCe----EEEEeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 222 IGCSTNSVAMSDRLELIIGRP---EAVYFYEVDGRGPC-WAFEGEK----KLLGWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 222 ~~~~~~~~~~s~~~~liv~~~---~~I~i~~~~g~~~~-~~~~g~~----~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
....-+|++||.+|.+++|+. ..+++|... .|.. ..++|.+ ..+.|+.-.-++++- ..|+|.||...
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~-~GsLVKILhG~kgE~l~DV~whp~rp~i~si----~sg~v~iw~~~ 322 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS-IGSLVKILHGTKGEELLDVNWHPVRPIIASI----ASGVVYIWAVV 322 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecC-CcceeeeecCCchhheeecccccceeeeeec----cCCceEEEEee
Confidence 012235789999999887653 589999754 3332 3556654 345565433333332 24799999643
No 94
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.3e-13 Score=155.20 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=161.7
Q ss_pred EEEeeCCCEEEEEecCCeEEEEcCC-C-eeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLDRG-L-KFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKME 106 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d~~-~-~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~ 106 (823)
=|+...+.+|++++.||.|++|+.. - +.-.+..-|+..|.+|+. .++.|++++++++ |.++.+...+
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~t---------v~~y~fps~~ 87 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNT---------VLRYKFPSGE 87 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccce---------EEEeeCCCCC
Confidence 3444456799999999999999932 2 222233348889999987 5579999999998 9999988543
Q ss_pred CCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEE
Q 037368 107 PEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLG 186 (823)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~ 186 (823)
. +. .+..+ +.| +.+++|+-+|.. +|+|+.|-.|++.+.+ .....+++..+++||.+|.
T Consensus 88 ~-----~~--iL~Rf-----tlp---~r~~~v~g~g~~---iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 88 E-----DT--ILARF-----TLP---IRDLAVSGSGKM---IAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred c-----cc--eeeee-----ecc---ceEEEEecCCcE---EEeecCceeEEEEecc----ccchheeecccCCceeeee
Confidence 1 11 22222 467 999999999999 9999999999999864 2334455667799999999
Q ss_pred EeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEc-------cCCCc-cceecccCC-CeEEE-eeCCeEEEEecCCCCc
Q 037368 187 FRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLD-------NIGCS-TNSVAMSDR-LELII-GRPEAVYFYEVDGRGP 255 (823)
Q Consensus 187 fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~-------~~~~~-~~~~~~s~~-~~liv-~~~~~I~i~~~~g~~~ 255 (823)
|+|.+ .+|+++ +++.|++|++..+. ...++. ..... ....+|+|+ |+|++ +.++.|++|+..|-..
T Consensus 146 ~~p~~--~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 146 YDPKG--NFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred EcCCC--CEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 99998 466666 46679999998653 223332 11122 234689997 77776 5678999999886555
Q ss_pred cccccCC-------eEEEEeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 256 CWAFEGE-------KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 256 ~~~~~g~-------~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
.+.+.+. ...+++.|.||++.+- ++.|.|||.++
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~-----~g~I~vWnv~t 263 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTL-----DGQILVWNVDT 263 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeecc-----CCcEEEEeccc
Confidence 5555432 1234557899999885 58999999985
No 95
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.58 E-value=4.7e-13 Score=133.35 Aligned_cols=255 Identities=15% Similarity=0.174 Sum_probs=161.4
Q ss_pred CCCeEEEeeCC---CEEEEEecCCeEEEEc--CCCeee-EeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 25 SGNITCCSSGR---GKVVIGCDDGAVSLLD--RGLKFN-FGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 25 ~~~is~~~~~~---~~l~~gs~dG~i~~~d--~~~~~~-~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
.+.|+++++++ ..++.||.||+||+|+ .+|..+ +....|.++|.+++|+.+|..++++|-|++ +|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~---------~k 97 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ---------AK 97 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc---------eE
Confidence 44599999875 4667999999999999 334432 345569999999999999999999999998 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC--CcceEEEEEeCCeEEEEEcccccccccceeEEe
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP--PILLIAIGLDNGCIYCIKGDIARERITRFKLQV 176 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~--~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~ 176 (823)
+|||.+.+ ++.+..| ..| |.++.|-+... + +++|+-|.+|+.||. |........
T Consensus 98 ~wDL~S~Q-----------~~~v~~H--d~p---vkt~~wv~~~~~~c---l~TGSWDKTlKfWD~-----R~~~pv~t~ 153 (347)
T KOG0647|consen 98 LWDLASGQ-----------VSQVAAH--DAP---VKTCHWVPGMNYQC---LVTGSWDKTLKFWDT-----RSSNPVATL 153 (347)
T ss_pred EEEccCCC-----------eeeeeec--ccc---eeEEEEecCCCcce---eEecccccceeeccc-----CCCCeeeee
Confidence 99998532 3344444 456 99999987665 6 999999999999985 333333334
Q ss_pred cCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCC-cceEEccCCCccceecccCC-CeEEEee-CCeEEEEecCC
Q 037368 177 DNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPP-KRQFLDNIGCSTNSVAMSDR-LELIIGR-PEAVYFYEVDG 252 (823)
Q Consensus 177 ~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~-~~~~l~~~~~~~~~~~~s~~-~~liv~~-~~~I~i~~~~g 252 (823)
+..+.|.++..-. ..+.+++. .+|.+|++++... .+..-..-....+|++.-.+ ..+++|+ .+.+-+-.++.
T Consensus 154 ~LPeRvYa~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 154 QLPERVYAADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDD 229 (347)
T ss_pred eccceeeehhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCC
Confidence 4566676665432 24555554 5699999975321 11111112234567654433 3356654 45566655543
Q ss_pred CCc--cccccCC------------eEEEEeeC--cEEEEEEecCCCCccEEEEEeCCCCEEEEec-cccc--eeEEEeec
Q 037368 253 RGP--CWAFEGE------------KKLLGWFR--GYLLCVIADQRNSKNIFNVYDLKNRLIAHSL-VVKE--VSHMLCEW 313 (823)
Q Consensus 253 ~~~--~~~~~g~------------~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~-~i~~--v~~v~~~~ 313 (823)
..+ .+.|.-| ...|+++. ..++++. .||+...||-+.+.-..+. ..+. ...-|+..
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-----sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-----SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec-----CCceEEEecchhhhhhhccCcCCCccceeEecCC
Confidence 211 1222211 11344443 3455555 4699999998765544332 2222 23337778
Q ss_pred CcEEEEEc
Q 037368 314 GNIILVMT 321 (823)
Q Consensus 314 ~~~~vvs~ 321 (823)
|++|+.+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 88777653
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.58 E-value=2.5e-13 Score=148.60 Aligned_cols=256 Identities=12% Similarity=0.160 Sum_probs=176.7
Q ss_pred eEEEee-CCCEEEEEecCCeEEEEcCCCe---eeEeEeecccceeE-EEEec-CCCEEEEEecCCCCcccccceeEEEEe
Q 037368 28 ITCCSS-GRGKVVIGCDDGAVSLLDRGLK---FNFGFQAHSSSVLF-LQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 28 is~~~~-~~~~l~~gs~dG~i~~~d~~~~---~~~~~~~H~~~V~~-i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
|..+++ .+..++.||.||++++|++.++ ....|.+|.+-|.. +++.+ ++..++++|.|++ +.+|.
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~---------i~v~~ 87 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT---------IIVFK 87 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce---------EEEEe
Confidence 533334 4557899999999999995333 33568888888877 88875 4456999999998 88999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
+... .| +.+++.| + +.|+|++...++ . +++|+-|.++++|+.. .....+..|+.+
T Consensus 88 ~~~~--------~P--~~~LkgH--~---snVC~ls~~~~~-~---~iSgSWD~TakvW~~~------~l~~~l~gH~as 142 (745)
T KOG0301|consen 88 LSQA--------EP--LYTLKGH--K---SNVCSLSIGEDG-T---LISGSWDSTAKVWRIG------ELVYSLQGHTAS 142 (745)
T ss_pred cCCC--------Cc--hhhhhcc--c---cceeeeecCCcC-c---eEecccccceEEecch------hhhcccCCcchh
Confidence 8843 34 4456544 2 238998887765 4 7999999999999752 111224466889
Q ss_pred cceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee-CCeEEEEecCCCCcccccc
Q 037368 182 VMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR-PEAVYFYEVDGRGPCWAFE 260 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~-~~~I~i~~~~g~~~~~~~~ 260 (823)
|+.+.+-|++ .++..+.|..|++|.-. ...++|.+|..-|+.+++-|++.|+.++ |+.|+.|+..|.- .+...
T Consensus 143 VWAv~~l~e~--~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~-l~~~~ 216 (745)
T KOG0301|consen 143 VWAVASLPEN--TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEV-LLEMH 216 (745)
T ss_pred eeeeeecCCC--cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCce-eeeee
Confidence 9999998887 45555566779999752 3677888888878888888998888765 4689999997532 23455
Q ss_pred CCeE---EEE-eeC-cEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc--eeEE-EeecCcEEEEEcCCeEEEEee
Q 037368 261 GEKK---LLG-WFR-GYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE--VSHM-LCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 261 g~~~---~i~-~~~-~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~--v~~v-~~~~~~~~vvs~~~~v~~l~~ 330 (823)
||.. +++ ..+ ..+++.. +|++++||+.. ...+...++. ++.+ +-..|++++-++||.|+....
T Consensus 217 ghtn~vYsis~~~~~~~Ivs~g-----EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 217 GHTNFVYSISMALSDGLIVSTG-----EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred ccceEEEEEEecCCCCeEEEec-----CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 6643 333 222 3444443 67999999877 3334444443 4444 234678888888886655543
No 97
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.7e-13 Score=131.73 Aligned_cols=209 Identities=11% Similarity=0.115 Sum_probs=138.1
Q ss_pred eEEEee--CCCEEEEEecCCeEEEEc-C----CCeeeEeEeecccceeEEEEec--CCCEEEEEecCCCCcccccceeEE
Q 037368 28 ITCCSS--GRGKVVIGCDDGAVSLLD-R----GLKFNFGFQAHSSSVLFLQQLK--QRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 28 is~~~~--~~~~l~~gs~dG~i~~~d-~----~~~~~~~~~~H~~~V~~i~~~~--~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
|.|+.+ ++..+++|+.|++|+||| . ++.+...+++|.++|..|.+.+ -|+.+||||.|+| ++
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt---------v~ 86 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT---------VS 86 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc---------ee
Confidence 677776 467999999999999999 2 3568889999999999999975 5899999999999 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc----cccccc-ccee
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD----IARERI-TRFK 173 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~----~~~~~~-~k~~ 173 (823)
||.=......+ .+. +=++...+.+.. +.|+.|.|.|.-. -+-+|+.+.||.+++|+.- +.+... .-.+
T Consensus 87 iWEE~~~~~~~--~~~-~Wv~~ttl~Dsr---ssV~DV~FaP~hl-GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 87 IWEEQEKSEEA--HGR-RWVRRTTLVDSR---SSVTDVKFAPKHL-GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eeeeccccccc--ccc-eeEEEEEeecCC---cceeEEEecchhc-ceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 99753221100 011 111111122222 3399999999632 1228999999999999741 111100 0000
Q ss_pred EEe----cCCCCcceEEEeecC-CeEEEEEEcCC------eEEEEEecCCC-Cc--ceEEccCCCccceecccCC-C---
Q 037368 174 LQV----DNQCSVMGLGFRVDG-QALQLFAVTPN------SVILFSLQNQP-PK--RQFLDNIGCSTNSVAMSDR-L--- 235 (823)
Q Consensus 174 ~~~----~~~~~It~l~fs~dg-~~~~l~~~t~~------~V~~~d~~~~~-~~--~~~l~~~~~~~~~~~~s~~-~--- 235 (823)
.+. ....+--+|.|++.- +...++++++. ++++|.....+ .. ...+.+++.+++.++|.|+ |
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 011 124566688887542 12467777765 68888865433 22 2335689999999999983 2
Q ss_pred -eEEEeeCCeEEEEecCC
Q 037368 236 -ELIIGRPEAVYFYEVDG 252 (823)
Q Consensus 236 -~liv~~~~~I~i~~~~g 252 (823)
.++++..++|+||++++
T Consensus 240 ~~lAvA~kDgv~I~~v~~ 257 (361)
T KOG2445|consen 240 HLLAVATKDGVRIFKVKV 257 (361)
T ss_pred eeEEEeecCcEEEEEEee
Confidence 25677777899999874
No 98
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.3e-13 Score=157.00 Aligned_cols=223 Identities=19% Similarity=0.253 Sum_probs=152.8
Q ss_pred CEEEEEecCCeEEEEcCC-------CeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRG-------LKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~-------~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
|.|+.|..||.|-+||.. ..++.+++-|+|.|..+.|.+.+ ++||||+.||. |-|||+.+.+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge---------I~iWDlnn~~- 150 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE---------ILIWDLNKPE- 150 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc---------EEEeccCCcC-
Confidence 568999999999999932 23567888999999999999955 59999999998 9999999743
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEe-cC--CCCcc
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DN--QCSVM 183 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~--~~~It 183 (823)
+|-.. ....+.+.|.+++|+..- .. +|+|+.+|.+.+||.. ..+..+-. .+ ...+.
T Consensus 151 ------tP~~~------~~~~~~~eI~~lsWNrkvqhI---LAS~s~sg~~~iWDlr-----~~~pii~ls~~~~~~~~S 210 (1049)
T KOG0307|consen 151 ------TPFTP------GSQAPPSEIKCLSWNRKVSHI---LASGSPSGRAVIWDLR-----KKKPIIKLSDTPGRMHCS 210 (1049)
T ss_pred ------CCCCC------CCCCCcccceEeccchhhhHH---hhccCCCCCceecccc-----CCCcccccccCCCcccee
Confidence 22110 011122569999998754 35 8999999999999863 22222222 12 23467
Q ss_pred eEEEeecCCeEEEEEEcC-Ce---EEEEEecCCCCcceEEccCCCccceecccCCC-eEEE--eeCCeEEEEecCCCCcc
Q 037368 184 GLGFRVDGQALQLFAVTP-NS---VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELII--GRPEAVYFYEVDGRGPC 256 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~-~~---V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv--~~~~~I~i~~~~g~~~~ 256 (823)
+|.|+|++. ..|+++++ ++ |.+||++--..+.+++.+|...+-++.|.+.+ ++++ |.|+.|.+|+.+. +..
T Consensus 211 ~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEv 288 (1049)
T KOG0307|consen 211 VLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEV 288 (1049)
T ss_pred eeeeCCCCc-eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceE
Confidence 899999985 44555554 33 99999986556888888888888899998755 6654 3467899999873 221
Q ss_pred -cccc--CC-eEEEEeeC--c-EEEEEEecCCCCccEEEEEeCCCC
Q 037368 257 -WAFE--GE-KKLLGWFR--G-YLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 257 -~~~~--g~-~~~i~~~~--~-ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
..+. |. ...+.|.. . .+.+.+ -+|.|.||.+.+.
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~as-----fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAAS-----FDGKISIYSLQGT 329 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhhe-----eccceeeeeeecC
Confidence 1121 11 12233432 2 333334 3588999988654
No 99
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.57 E-value=7.3e-14 Score=146.39 Aligned_cols=189 Identities=12% Similarity=0.131 Sum_probs=134.1
Q ss_pred CCEEEEEecCCeEEEEcC--CC------eeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 35 RGKVVIGCDDGAVSLLDR--GL------KFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~--~~------~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
.+.|++|+.|++|.+||- .+ .+...|.+|+..|..++|++-. +.++|||+|+. +.|||++..
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~---------L~iwD~R~~ 260 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK---------LMIWDTRSN 260 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe---------EEEEEcCCC
Confidence 368999999999999992 12 2345789999999999999844 67899999998 999999852
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcce
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
. ..+.++...+ +.+ |+|++|+|-+ .. ||+|+.||+|.|||. |+...+...+..++..|..
T Consensus 261 ~--------~~~~~~~~ah--~~~---vn~~~fnp~~~~i---lAT~S~D~tV~LwDl---RnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 261 T--------SKPSHSVKAH--SAE---VNCVAFNPFNEFI---LATGSADKTVALWDL---RNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred C--------CCCccccccc--CCc---eeEEEeCCCCCce---EEeccCCCcEEEeec---hhcccCceeccCCCcceEE
Confidence 1 1122233322 344 9999999944 45 999999999999986 3333344444566889999
Q ss_pred EEEeecCCeEEEEEE-cCCeEEEEEecCCC-----------CcceEE--ccCCCccceecccCCCeEEEe--e-CCeEEE
Q 037368 185 LGFRVDGQALQLFAV-TPNSVILFSLQNQP-----------PKRQFL--DNIGCSTNSVAMSDRLELIIG--R-PEAVYF 247 (823)
Q Consensus 185 l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~-----------~~~~~l--~~~~~~~~~~~~s~~~~liv~--~-~~~I~i 247 (823)
|.|+|... .+|+++ +++.+.+||+..-+ .+.-.| .+|...+.-.+|.|..-.+++ . ++.+.|
T Consensus 322 V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 322 VEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999864 455555 45679999986321 122122 456667777889986654332 2 458899
Q ss_pred EecCC
Q 037368 248 YEVDG 252 (823)
Q Consensus 248 ~~~~g 252 (823)
|.+.+
T Consensus 401 W~~s~ 405 (422)
T KOG0264|consen 401 WQMAE 405 (422)
T ss_pred eeccc
Confidence 98763
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.56 E-value=2e-13 Score=143.03 Aligned_cols=254 Identities=14% Similarity=0.178 Sum_probs=173.5
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc-CCCeee----Ee--------------EeecccceeEEEEecCCCEEEEEecC
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFN----FG--------------FQAHSSSVLFLQQLKQRNFLVTVGED 85 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~----~~--------------~~~H~~~V~~i~~~~~~~~l~s~s~D 85 (823)
++.|++.++ .+.++++.+|+|.-|+ .+|+.. .+ .++|...|.++++++||.+|||++-|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 355555544 5889999999999998 444311 11 13788899999999999999999999
Q ss_pred CCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccc
Q 037368 86 EQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIA 165 (823)
Q Consensus 86 ~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~ 165 (823)
.. |.||+..+.+ .+++++.+ . ..|.+++|-...+. +.+++.|.+|.+|..+-
T Consensus 224 ~~---------v~Iw~~~t~e----------hv~~~~gh--r---~~V~~L~fr~gt~~---lys~s~Drsvkvw~~~~- 275 (479)
T KOG0299|consen 224 RH---------VQIWDCDTLE----------HVKVFKGH--R---GAVSSLAFRKGTSE---LYSASADRSVKVWSIDQ- 275 (479)
T ss_pred ce---------EEEecCcccc----------hhhccccc--c---cceeeeeeecCccc---eeeeecCCceEEEehhH-
Confidence 87 9999998542 13333433 2 23999999888778 99999999999998651
Q ss_pred cccccceeEEecCCCCcceEEEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCC-
Q 037368 166 RERITRFKLQVDNQCSVMGLGFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPE- 243 (823)
Q Consensus 166 ~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~- 243 (823)
-.-..+++++.+.|.+|.-..-+ ..+.++ .+.++++|.+... ..-++.++...+.|++|-.+..|++|+++
T Consensus 276 ---~s~vetlyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG 348 (479)
T KOG0299|consen 276 ---LSYVETLYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNG 348 (479)
T ss_pred ---hHHHHHHhCCccceeeechhccc--ceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCc
Confidence 11233467788889998776655 456666 4667999999543 33455667778999999999999999875
Q ss_pred eEEEEecCCCCcccccc-------CC--------eEEEE--eeCcEEEEEEecCCCCccEEEEEeCCCCEE----EEecc
Q 037368 244 AVYFYEVDGRGPCWAFE-------GE--------KKLLG--WFRGYLLCVIADQRNSKNIFNVYDLKNRLI----AHSLV 302 (823)
Q Consensus 244 ~I~i~~~~g~~~~~~~~-------g~--------~~~i~--~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i----~~~~~ 302 (823)
.|.+|++-.+.|.++.. .+ ...++ +..+.+++++ .++.|++|-+..++. .++..
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-----~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-----WSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-----CCCceEEEEecCCccccceeeecc
Confidence 89999987555543221 10 11121 2234444444 468999999987743 23334
Q ss_pred ccc-eeEE-EeecCcEEEEE
Q 037368 303 VKE-VSHM-LCEWGNIILVM 320 (823)
Q Consensus 303 i~~-v~~v-~~~~~~~~vvs 320 (823)
+.. |..+ |+..|..++++
T Consensus 424 ~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccEEEEEEEccCCCEEEEe
Confidence 444 3333 46666645444
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.56 E-value=4.8e-14 Score=140.34 Aligned_cols=211 Identities=14% Similarity=0.146 Sum_probs=147.9
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC---------CCCCCCCCceEEEEEeccCC
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP---------EGTSSTSPDCIGILRVFTSQ 127 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~---------~~~~~~~~~~~~~~~~~~~~ 127 (823)
...+..|.+++.+.+|+|||.++||+|.|.. |||.|+.+.-. .....+.| .+|++. ++.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~S---------IKildvermlaks~~~em~~~~~qa~hP-vIRTlY--DH~ 172 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADAS---------IKILDVERMLAKSKPKEMISGDTQARHP-VIRTLY--DHV 172 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcce---------EEEeehhhhhhhcchhhhccCCcccCCc-eEeehh--hcc
Confidence 4467789999999999999999999999997 99999984321 01112334 567765 323
Q ss_pred CCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEE
Q 037368 128 FPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVIL 206 (823)
Q Consensus 128 ~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~ 206 (823)
-+ |+++.|||.... +++|+.|++|++++-. +....|...+++..+||.+|+|.|.| .+|.++++. .+++
T Consensus 173 de---vn~l~FHPre~I---LiS~srD~tvKlFDfs--K~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rl 242 (430)
T KOG0640|consen 173 DE---VNDLDFHPRETI---LISGSRDNTVKLFDFS--KTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRL 242 (430)
T ss_pred Cc---ccceeecchhhe---EEeccCCCeEEEEecc--cHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeE
Confidence 34 999999999999 9999999999999752 11111222234456899999999999 578888876 5899
Q ss_pred EEecCCCCcceE-E-ccCCCccceecccCCCeEEE-ee-CCeEEEEecCCCCccc-----cccCC-eEEEEe--eCcEEE
Q 037368 207 FSLQNQPPKRQF-L-DNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVDGRGPCW-----AFEGE-KKLLGW--FRGYLL 274 (823)
Q Consensus 207 ~d~~~~~~~~~~-l-~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~g~~~~~-----~~~g~-~~~i~~--~~~ylv 274 (823)
||+.+-+..... . +.|...++|+..|+.|.+.+ |+ |+.|++||-- .+.|. +..|. .....+ .+.|++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-S~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-SNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc-cHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 999764311111 1 35667889999999998654 44 5799999843 23342 22332 233333 466877
Q ss_pred EEEecCCCCccEEEEEeCCCC
Q 037368 275 CVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 275 ~~s~d~~~~~~~I~I~D~~~~ 295 (823)
+.. .|.++++|.+.++
T Consensus 322 sSG-----~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 322 SSG-----KDSTVKLWEISTG 337 (430)
T ss_pred ecC-----CcceeeeeeecCC
Confidence 655 4689999999764
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.56 E-value=4.4e-14 Score=153.24 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=168.2
Q ss_pred CEEEEEecCCeEEEEc-C--CCe----eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-R--GLK----FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE 108 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~--~~~----~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~ 108 (823)
.+|++|+.||.|++|+ . .++ .+.+++.|+..|+.|.....|+.|+|||.|.| ||+|+..+.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT---------VK~W~~~~~--- 105 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT---------VKVWNAHKD--- 105 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce---------EEEeecccC---
Confidence 4799999999999998 2 122 36688899999999999889999999999998 999999853
Q ss_pred CCCCCCCceEEEEEeccCCCCCCceEEEEE-ecCCCCcceEEEEEeCCeEEEEEcccccc-----ccccee--EEecCCC
Q 037368 109 GTSSTSPDCIGILRVFTSQFPEAKITSFLV-LEEAPPILLIAIGLDNGCIYCIKGDIARE-----RITRFK--LQVDNQC 180 (823)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~~~v~~va~-~~d~~~~~~ia~G~~dG~V~l~~~~~~~~-----~~~k~~--~~~~~~~ 180 (823)
++ -|+++++.|+ .+ |.|+|. -++... +|+|+.|+.|.+|+...... ...... ....+..
T Consensus 106 ----~~-~c~stir~H~-DY----Vkcla~~ak~~~l---vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 106 ----NT-FCMSTIRTHK-DY----VKCLAYIAKNNEL---VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred ----cc-hhHhhhhccc-ch----heeeeecccCcee---EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 12 3788887653 23 899999 777778 99999999999999752111 000000 0113357
Q ss_pred CcceEEEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEe-eCCeEEEEecCCCCccc
Q 037368 181 SVMGLGFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIG-RPEAVYFYEVDGRGPCW 257 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~-~~~~I~i~~~~g~~~~~ 257 (823)
+|.+++-++.| .+++.+ +.+-+++||...+.. ...+.+|...+.++..++||+ ++.+ +|++|++|+.. ...|.
T Consensus 173 siYSLA~N~t~--t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg-qQrCl 248 (735)
T KOG0308|consen 173 SIYSLAMNQTG--TIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG-QQRCL 248 (735)
T ss_pred ceeeeecCCcc--eEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc-cccee
Confidence 88899988887 334333 345599999876532 334558989999999999996 4444 45699999986 44553
Q ss_pred -cccCCe---EEEEeeCc--EEEEEEecCCCCccEEEEEeCCCC---EEEEeccccceeEE-Ee-ecCcEEEEEcCCeEE
Q 037368 258 -AFEGEK---KLLGWFRG--YLLCVIADQRNSKNIFNVYDLKNR---LIAHSLVVKEVSHM-LC-EWGNIILVMTDKSVL 326 (823)
Q Consensus 258 -~~~g~~---~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~~---~i~~~~~i~~v~~v-~~-~~~~~~vvs~~~~v~ 326 (823)
++-.|+ ..+.+..+ ++..+. +++.|..=|+.+. ...+...-+ +..+ .. .++++++.+.+++|-
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~-----rd~~i~~Tdl~n~~~~tlick~daP-v~~l~~~~~~~~~WvtTtds~I~ 322 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGG-----RDGNIYRTDLRNPAKSTLICKEDAP-VLKLHLHEHDNSVWVTTTDSSIK 322 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecC-----CCCcEEecccCCchhheEeecCCCc-hhhhhhccccCCceeeeccccce
Confidence 333332 22222222 333332 4577777777652 222222111 1111 11 234566666677665
Q ss_pred EE
Q 037368 327 CI 328 (823)
Q Consensus 327 ~l 328 (823)
+-
T Consensus 323 rW 324 (735)
T KOG0308|consen 323 RW 324 (735)
T ss_pred ec
Confidence 44
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.55 E-value=2.7e-14 Score=147.45 Aligned_cols=258 Identities=11% Similarity=0.116 Sum_probs=173.0
Q ss_pred EEEeeCCCEEEEEecCCeEEEEcCCCe---eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLDRGLK---FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d~~~~---~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
.-+-...+.|++|+.|..|++|+..++ .+.++.|-.++|+.+.+++++..+++.|.|+. +++|+++..
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~---------~r~Wnvd~~ 251 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN---------LRLWNVDSL 251 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc---------eeeeeccch
Confidence 333344579999999999999994432 45667777889999999999999999999998 999999853
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceE
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGL 185 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l 185 (823)
+..+++..|. .+|+++.|...-.. +++|+.|-+|++|+.. +.-..+.++. .+.+..|
T Consensus 252 ----------r~~~TLsGHt-----dkVt~ak~~~~~~~---vVsgs~DRtiK~WDl~----k~~C~kt~l~-~S~cnDI 308 (459)
T KOG0288|consen 252 ----------RLRHTLSGHT-----DKVTAAKFKLSHSR---VVSGSADRTIKLWDLQ----KAYCSKTVLP-GSQCNDI 308 (459)
T ss_pred ----------hhhhhhcccc-----cceeeehhhccccc---eeeccccchhhhhhhh----hhheeccccc-cccccce
Confidence 3455666442 44999999888777 9999999999999853 1222222221 1223333
Q ss_pred EEeecCCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EE-EeeCCeEEEEecCCCCccccc--c
Q 037368 186 GFRVDGQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LI-IGRPEAVYFYEVDGRGPCWAF--E 260 (823)
Q Consensus 186 ~fs~dg~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-li-v~~~~~I~i~~~~g~~~~~~~--~ 260 (823)
.-++ ..++.+ ++.+|++||..+. .+....+. |..+.++..+++|. ++ .++++++.+.+.++...+..+ +
T Consensus 309 ~~~~----~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~ 382 (459)
T KOG0288|consen 309 VCSI----SDVISGHFDKKVRFWDIRSA-DKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE 382 (459)
T ss_pred Eecc----eeeeecccccceEEEeccCC-ceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence 3321 122222 4667999998753 24444444 44788999998886 43 367889999998876544332 2
Q ss_pred C----C---eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc----eeEE-EeecCcEEEEEcCCeEEEE
Q 037368 261 G----E---KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE----VSHM-LCEWGNIILVMTDKSVLCI 328 (823)
Q Consensus 261 g----~---~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~----v~~v-~~~~~~~~vvs~~~~v~~l 328 (823)
| + ...++|.+.|+++++. ++.|.||++.++.+......+. +..+ +++.|.-.+.+..+.-.++
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred ccccccccceeEECCCCceeeeccC-----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 2 1 3467888999999985 4899999999877655332221 3332 4444444444444444444
Q ss_pred e
Q 037368 329 G 329 (823)
Q Consensus 329 ~ 329 (823)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 3
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-12 Score=145.83 Aligned_cols=279 Identities=17% Similarity=0.222 Sum_probs=183.8
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCE-EEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNF-LVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~-l~s~s~D~~~~~~~~~~~vkvW 100 (823)
...|+|+...+ +.+++|..+|+|++++ +.++.+.+|+.-.++|+.++|..||+- ||+++..|. +-+|
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~---------m~~w 272 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGD---------MAFW 272 (910)
T ss_pred ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCce---------EEEE
Confidence 36899998876 7899999999999999 888999999966799999999988865 566666676 9999
Q ss_pred eCCCCCCC-------------------------------------CCCCC-------------CCceEE-----------
Q 037368 101 DLDKMEPE-------------------------------------GTSST-------------SPDCIG----------- 119 (823)
Q Consensus 101 dl~~~~~~-------------------------------------~~~~~-------------~~~~~~----------- 119 (823)
||++.... ....| .|.|++
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 99865310 00001 011211
Q ss_pred -----EEE--------------------------------------------------------ec------------cC
Q 037368 120 -----ILR--------------------------------------------------------VF------------TS 126 (823)
Q Consensus 120 -----~~~--------------------------------------------------------~~------------~~ 126 (823)
+++ .| .+
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 000 00 00
Q ss_pred C------CC------CCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe----cCCCCcceEEEeec
Q 037368 127 Q------FP------EAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV----DNQCSVMGLGFRVD 190 (823)
Q Consensus 127 ~------~p------~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~----~~~~~It~l~fs~d 190 (823)
. -| +..++||++++.|+. ..+|+..|.|-+|+.. ....+--+ .++++|++|+....
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF---~~IG~S~G~Id~fNmQ-----SGi~r~sf~~~~ah~~~V~gla~D~~ 504 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNF---VFIGYSKGTIDRFNMQ-----SGIHRKSFGDSPAHKGEVTGLAVDGT 504 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCce---EEEeccCCeEEEEEcc-----cCeeecccccCccccCceeEEEecCC
Confidence 0 00 135899999999999 9999999999999753 11111112 35789999997655
Q ss_pred CCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccC-CCeEEEeeCC-eEEEEecCCCCccccccCCe----
Q 037368 191 GQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSD-RLELIIGRPE-AVYFYEVDGRGPCWAFEGEK---- 263 (823)
Q Consensus 191 g~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~-~~~liv~~~~-~I~i~~~~g~~~~~~~~g~~---- 263 (823)
+ ..+.+++.+ -+.+|+..++. ++..++ -|+.+.++.... .+-++++.++ .|.++|+..+...-.|.||.
T Consensus 505 n--~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit 580 (910)
T KOG1539|consen 505 N--RLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT 580 (910)
T ss_pred C--ceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee
Confidence 5 345555544 48899997654 334443 345555555443 5557777776 89999987665555677772
Q ss_pred -EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc-eeEE-EeecCcEEEEEcCC-eEEEEe
Q 037368 264 -KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE-VSHM-LCEWGNIILVMTDK-SVLCIG 329 (823)
Q Consensus 264 -~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~-v~~v-~~~~~~~~vvs~~~-~v~~l~ 329 (823)
..++++|.+|++++. |++|++||+-+....=.-.+.+ ..++ +++.|+++..+..+ .-+.||
T Consensus 581 d~~FS~DgrWlisasm-----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASM-----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeEeCCCCcEEEEeec-----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 356778899999985 5899999998765432223333 2233 67777766665433 334444
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=2.3e-13 Score=141.94 Aligned_cols=225 Identities=17% Similarity=0.171 Sum_probs=150.1
Q ss_pred CCEEEEEecCCeEEEEcCC----Ceee----------------EeE--eecccceeEEEEecC-CCEEEEEecCCCCccc
Q 037368 35 RGKVVIGCDDGAVSLLDRG----LKFN----------------FGF--QAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQ 91 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~~----~~~~----------------~~~--~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~ 91 (823)
++++|+||.+..|.|||.. -.+. +.+ .+|+..|..+++... .++|||+|.|.|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T---- 267 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT---- 267 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce----
Confidence 3599999999999999932 0111 111 258888888888653 478999999999
Q ss_pred ccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEccccccccc
Q 037368 92 QSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERIT 170 (823)
Q Consensus 92 ~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~ 170 (823)
|++||+++. + |.+++..+ + .+|.+++|+|.- +. +.+|+.||+|.+.+. |+.+.
T Consensus 268 -----V~lWD~~~g--------~--p~~s~~~~--~---k~Vq~l~wh~~~p~~---LLsGs~D~~V~l~D~---R~~~~ 321 (463)
T KOG0270|consen 268 -----VKLWDVDTG--------K--PKSSITHH--G---KKVQTLEWHPYEPSV---LLSGSYDGTVALKDC---RDPSN 321 (463)
T ss_pred -----EEEEEcCCC--------C--cceehhhc--C---CceeEEEecCCCceE---EEeccccceEEeeec---cCccc
Confidence 999999953 3 45565533 2 339999999964 45 999999999999986 22111
Q ss_pred ceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccC--CCeEEEee-CCeEE
Q 037368 171 RFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD--RLELIIGR-PEAVY 246 (823)
Q Consensus 171 k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~--~~~liv~~-~~~I~ 246 (823)
... -+.-.+.|-.++|.+... ...+++++ +.|+-+|++..+.+...+..|..++.++++++ -|.+++++ ++.|+
T Consensus 322 s~~-~wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 322 SGK-EWKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cCc-eEEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 111 122256788999988653 34555555 45899999876667778888988999998875 44566554 46899
Q ss_pred EEecCCCCcccc----cc-CCeEEE--EeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 247 FYEVDGRGPCWA----FE-GEKKLL--GWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 247 i~~~~g~~~~~~----~~-g~~~~i--~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
+|+..+..+... +. |...++ .+.-.+++++.. ..+.++|||+.+.
T Consensus 400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG----~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG----EKAVLRVWDIFTN 451 (463)
T ss_pred EEeecCCCCcccccccccccceeecccCCCcceEEEecC----ccceEEEeecccC
Confidence 999876543211 10 111111 112234444433 3458999998653
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.53 E-value=4e-13 Score=154.43 Aligned_cols=233 Identities=15% Similarity=0.187 Sum_probs=164.2
Q ss_pred CCCeEEEeeC-C-CEEEEEecCCeEEEEcCC-------------------CeeeEeEeecccceeEEEEecCCCEEEEEe
Q 037368 25 SGNITCCSSG-R-GKVVIGCDDGAVSLLDRG-------------------LKFNFGFQAHSSSVLFLQQLKQRNFLVTVG 83 (823)
Q Consensus 25 ~~~is~~~~~-~-~~l~~gs~dG~i~~~d~~-------------------~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s 83 (823)
...|+|+.++ + .+||+||.|+.|.+|.+. ++....+.+|++.|..++|+|++.+|||+|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 4458999653 3 589999999999999843 124668889999999999999999999999
Q ss_pred cCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc-
Q 037368 84 EDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG- 162 (823)
Q Consensus 84 ~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~- 162 (823)
-|++ |.|||..+. .++.+++.| ..+ |..++|+|-|++ +|+=+.|++|++|+.
T Consensus 149 ~Dns---------Viiwn~~tF----------~~~~vl~~H--~s~---VKGvs~DP~Gky---~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 149 LDNS---------VIIWNAKTF----------ELLKVLRGH--QSL---VKGVSWDPIGKY---FASQSDDRTLKVWRTS 201 (942)
T ss_pred ccce---------EEEEccccc----------eeeeeeecc--ccc---ccceEECCccCe---eeeecCCceEEEEEcc
Confidence 9998 999999854 367777754 344 999999999999 999999999999983
Q ss_pred ccccccccceeEEe---c---CCCCcceEEEeecCCeEEEEEEcC--C---eEEEEEecCCCCcceEEccCCCccceecc
Q 037368 163 DIARERITRFKLQV---D---NQCSVMGLGFRVDGQALQLFAVTP--N---SVILFSLQNQPPKRQFLDNIGCSTNSVAM 231 (823)
Q Consensus 163 ~~~~~~~~k~~~~~---~---~~~~It~l~fs~dg~~~~l~~~t~--~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~ 231 (823)
++ + -.+.+. + ...-..-++|||||+ +|+++.. + .+.+.+..+. .....|-+|..++.|+.|
T Consensus 202 dw----~-i~k~It~pf~~~~~~T~f~RlSWSPDG~--~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 202 DW----G-IEKSITKPFEESPLTTFFLRLSWSPDGH--HLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRF 273 (942)
T ss_pred cc----e-eeEeeccchhhCCCcceeeecccCCCcC--eecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEe
Confidence 21 1 011111 1 123466899999994 5655542 2 3666665432 234556688889999999
Q ss_pred cC------CC---------e--E-EEe-eCCeEEEEecCCCCcccc----ccCCeEEEEee--CcEEEEEEecCCCCccE
Q 037368 232 SD------RL---------E--L-IIG-RPEAVYFYEVDGRGPCWA----FEGEKKLLGWF--RGYLLCVIADQRNSKNI 286 (823)
Q Consensus 232 s~------~~---------~--l-iv~-~~~~I~i~~~~g~~~~~~----~~g~~~~i~~~--~~ylv~~s~d~~~~~~~ 286 (823)
+| .+ . . ++| .|.+|-+|...-..|.+. +.-....++|. |--|.++| .||+
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS-----~DGt 348 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS-----LDGT 348 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe-----cCCe
Confidence 87 11 1 2 233 356999998743333321 22224457775 55666666 4689
Q ss_pred EEEEeCCCCEE
Q 037368 287 FNVYDLKNRLI 297 (823)
Q Consensus 287 I~I~D~~~~~i 297 (823)
|.++..+.+.+
T Consensus 349 V~~i~Fee~El 359 (942)
T KOG0973|consen 349 VALIHFEEKEL 359 (942)
T ss_pred EEEEEcchHHh
Confidence 99998876543
No 107
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.4e-13 Score=141.81 Aligned_cols=228 Identities=12% Similarity=0.093 Sum_probs=155.8
Q ss_pred CeEEEee-C-CCEEEEEecCCeEEEEc-CCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 27 NITCCSS-G-RGKVVIGCDDGAVSLLD-RGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 27 ~is~~~~-~-~~~l~~gs~dG~i~~~d-~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
+|+-+.. + +.+|++|+.+-.+.+|| .+|...+.|. +|.-++++++|.|||..+++||.|++ +.-||+
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~---------i~~wdl 341 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRT---------IIMWDL 341 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCc---------EEEecC
Confidence 3654443 3 46899999999999999 6788776664 46689999999999999999999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
+.... .+-+-++ . .+|.++|+++||.. +.+.+.|..|.+|+..-..+++ +.+.+.||
T Consensus 342 Dgn~~--------~~W~gvr----~---~~v~dlait~Dgk~---vl~v~~d~~i~l~~~e~~~dr~-----lise~~~i 398 (519)
T KOG0293|consen 342 DGNIL--------GNWEGVR----D---PKVHDLAITYDGKY---VLLVTVDKKIRLYNREARVDRG-----LISEEQPI 398 (519)
T ss_pred Ccchh--------hcccccc----c---ceeEEEEEcCCCcE---EEEEecccceeeechhhhhhhc-----cccccCce
Confidence 85321 0111111 1 23999999999998 8888889999999743111111 34457899
Q ss_pred ceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC--CccceecccC-CCeEEEee--CCeEEEEecCCCCccc
Q 037368 183 MGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG--CSTNSVAMSD-RLELIIGR--PEAVYFYEVDGRGPCW 257 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~--~~~~~~~~s~-~~~liv~~--~~~I~i~~~~g~~~~~ 257 (823)
|++..|.||+ ..|.-..+.+|.+||+.... ..+...+|. .-+-..||-. +..|++++ |+.|++|+-....+..
T Consensus 399 ts~~iS~d~k-~~LvnL~~qei~LWDl~e~~-lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 399 TSFSISKDGK-LALVNLQDQEIHLWDLEENK-LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred eEEEEcCCCc-EEEEEcccCeeEEeecchhh-HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 9999999985 45555567789999998542 222222332 2222345643 44677654 3589999976333345
Q ss_pred cccCCe---EEEEeeC---cEEEEEEecCCCCccEEEEEeCC
Q 037368 258 AFEGEK---KLLGWFR---GYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 258 ~~~g~~---~~i~~~~---~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
.+.||. .+++|.. ..+++++ .|+||+||-+.
T Consensus 477 ~LsGHs~~vNcVswNP~~p~m~ASas-----DDgtIRIWg~~ 513 (519)
T KOG0293|consen 477 VLSGHSKTVNCVSWNPADPEMFASAS-----DDGTIRIWGPS 513 (519)
T ss_pred eecCCcceeeEEecCCCCHHHhhccC-----CCCeEEEecCC
Confidence 678884 3566643 2444444 57999999764
No 108
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.9e-12 Score=125.91 Aligned_cols=234 Identities=12% Similarity=0.126 Sum_probs=164.8
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEec--CCCCcccccceeEEE
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGE--DEQVSAQQSAVCLKV 99 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~--D~~~~~~~~~~~vkv 99 (823)
...|+++.+++ ..+++++.|-++++|| .+++..++...+...|..++|....+.++.+|. |.+ ||.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t---------Iry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT---------IRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc---------eEE
Confidence 34688888864 4788899999999999 789999999888889999999877777766665 776 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DN 178 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~ 178 (823)
-++... +++|-+..| . ..|++++.+|-... +.+|+.|++|++||.. ..+.+.+. -.
T Consensus 85 Lsl~dN----------kylRYF~GH--~---~~V~sL~~sP~~d~---FlS~S~D~tvrLWDlR-----~~~cqg~l~~~ 141 (311)
T KOG1446|consen 85 LSLHDN----------KYLRYFPGH--K---KRVNSLSVSPKDDT---FLSSSLDKTVRLWDLR-----VKKCQGLLNLS 141 (311)
T ss_pred EEeecC----------ceEEEcCCC--C---ceEEEEEecCCCCe---EEecccCCeEEeeEec-----CCCCceEEecC
Confidence 998742 367666544 2 23999999999999 9999999999999863 23333333 22
Q ss_pred CCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCC-CcceEEc---cCCCccceecccCCCeEE-Eee-CCeEEEEec-
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQP-PKRQFLD---NIGCSTNSVAMSDRLELI-IGR-PEAVYFYEV- 250 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~-~~~~~l~---~~~~~~~~~~~s~~~~li-v~~-~~~I~i~~~- 250 (823)
.-|| .+|.|.| .++++++.+ .|.+||++.-. .|-.++. +..++.+-+.|||||+.+ ++. ++.+++.+.
T Consensus 142 ~~pi--~AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 142 GRPI--AAFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCcc--eeECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 3333 5689998 455666655 69999997532 3555542 334455678899999854 443 356777664
Q ss_pred CCCCccccccCC--------eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEe
Q 037368 251 DGRGPCWAFEGE--------KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS 300 (823)
Q Consensus 251 ~g~~~~~~~~g~--------~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~ 300 (823)
+|.- ...|+++ ...+.+.+.++++++ .+++|.+|+++++..+..
T Consensus 218 ~G~~-~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-----~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 218 DGTV-KSTFSGYPNAGNLPLSATFTPDSKFVLSGS-----DDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCcE-eeeEeeccCCCCcceeEEECCCCcEEEEec-----CCCcEEEEEcCCCcEeeE
Confidence 3331 1233332 124556788998887 458999999988766543
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.6e-13 Score=147.58 Aligned_cols=231 Identities=13% Similarity=0.150 Sum_probs=169.6
Q ss_pred CCCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEee-cccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQA-HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~-H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
...|+++... +++|++|+.+|.|.||| .+.+.++++.+ |.+.|.++++. +..+.+++.|+. |.++
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~---------I~~~ 285 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGK---------ILNH 285 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCc---------EEEE
Confidence 4568777764 57999999999999999 56677778888 99999999995 688999999998 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
|+...+ ...+++..|. ++|..++|++|+.+ +|+|+.|+.|.+|+.. +..++ ..+.++..
T Consensus 286 dvR~~~---------~~~~~~~~H~-----qeVCgLkws~d~~~---lASGgnDN~~~Iwd~~---~~~p~-~~~~~H~a 344 (484)
T KOG0305|consen 286 DVRISQ---------HVVSTLQGHR-----QEVCGLKWSPDGNQ---LASGGNDNVVFIWDGL---SPEPK-FTFTEHTA 344 (484)
T ss_pred EEecch---------hhhhhhhccc-----ceeeeeEECCCCCe---eccCCCccceEeccCC---Ccccc-EEEeccce
Confidence 998532 1222233221 44999999999999 9999999999999872 22232 23567889
Q ss_pred CcceEEEeecCCeEEEEEEc---CCeEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEee---CCeEEEEecCCC
Q 037368 181 SVMGLGFRVDGQALQLFAVT---PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGR---PEAVYFYEVDGR 253 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t---~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~---~~~I~i~~~~g~ 253 (823)
.|..++|+|-.. .+|+++. +..|++|+..+.. ..... ..|..|..+.|++.. +++++- .+.|.+|+.-.-
T Consensus 345 AVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~-~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 345 AVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGA-RIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred eeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCc-Eeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 999999998653 4677664 3459999987532 22333 357788889999865 576643 357899986433
Q ss_pred CccccccCCeE-----EEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 254 GPCWAFEGEKK-----LLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 254 ~~~~~~~g~~~-----~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
.....+.||.. .+++++.++++++. |.|+++|++.+.
T Consensus 422 ~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-----DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 KLVAELLGHTSRVLYLALSPDGETIVTGAA-----DETLRFWNLFDE 463 (484)
T ss_pred ceeeeecCCcceeEEEEECCCCCEEEEecc-----cCcEEeccccCC
Confidence 33345567632 34557889999885 479999988664
No 110
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.53 E-value=6.4e-13 Score=139.38 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=158.5
Q ss_pred CEEEEEecCCeEEEEcCC---Cee--------eEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCC
Q 037368 36 GKVVIGCDDGAVSLLDRG---LKF--------NFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~---~~~--------~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
..+++++..|.|.|||.+ ... -.++++|++.=..++|++.. ..|+|+|+|++ |.+||+.
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~---------i~lwdi~ 208 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT---------ICLWDIN 208 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc---------EEEEecc
Confidence 467889999999999922 111 12688999877789998743 56999999998 9999998
Q ss_pred CCCCCCCCCCCCceEEEEEec-cCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC
Q 037368 104 KMEPEGTSSTSPDCIGILRVF-TSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
..... +.++.....+ ++. ..|.-|+|++-- +. +++.+.||.+.|||... ...........+.++
T Consensus 209 ~~~~~------~~~~~p~~~~~~h~---~~VeDV~~h~~h~~l---F~sv~dd~~L~iwD~R~--~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 209 AESKE------DKVVDPKTIFSGHE---DVVEDVAWHPLHEDL---FGSVGDDGKLMIWDTRS--NTSKPSHSVKAHSAE 274 (422)
T ss_pred ccccC------CccccceEEeecCC---cceehhhccccchhh---heeecCCCeEEEEEcCC--CCCCCcccccccCCc
Confidence 54311 1122111122 222 339999999843 45 88889999999998621 111222234456899
Q ss_pred cceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe--EEEee-CCeEEEEecCCCC---
Q 037368 182 VMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE--LIIGR-PEAVYFYEVDGRG--- 254 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~--liv~~-~~~I~i~~~~g~~--- 254 (823)
|.+++|+|-+. .+|++++ +++|.+||++.-..+..++++|...+.++.|||... ++.++ |+.+.+||...-+
T Consensus 275 vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 275 VNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred eeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999998763 5666665 667999999876668888999999999999999665 34333 4689999975221
Q ss_pred --------c---cccccCCeE---EEEee--CcEEEEEEecCCCCccEEEEEeCCC
Q 037368 255 --------P---CWAFEGEKK---LLGWF--RGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 255 --------~---~~~~~g~~~---~i~~~--~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
+ .+...||.. -++|. .+++++... +|+.+.||++..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva----eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA----EDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec----CCceEEEeeccc
Confidence 1 134456643 34554 456655443 578999998764
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.3e-13 Score=133.78 Aligned_cols=239 Identities=10% Similarity=0.110 Sum_probs=165.3
Q ss_pred CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC------CCC
Q 037368 34 GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD------KME 106 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~------~~~ 106 (823)
....+.+++.|.+.+||. .+|.++.++.||.|+|++|.|++++.+++|+|.|++ -.||... +..
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t---------aHIW~~av~~~vP~~~ 229 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET---------AHIWKAAVNWEVPSNN 229 (481)
T ss_pred CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc---------hHHHHHhhcCcCCCCC
Confidence 345678899999999999 889999999999999999999999999999999998 8889732 110
Q ss_pred CC--------------------C-CCCCCCceEEE--EEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 107 PE--------------------G-TSSTSPDCIGI--LRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 107 ~~--------------------~-~~~~~~~~~~~--~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
.. + .....| .+++ .++.++..+ |.+..|-..|++ +++|+-|.+-.+|+..
T Consensus 230 a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~-tiRvPl~~ltgH~~v---V~a~dWL~gg~Q---~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 230 APSDHSSEEEEEHSDEHNRDTDSSEKSDGH-TIRVPLMRLTGHRAV---VSACDWLAGGQQ---MVTASWDRTANLWDVE 302 (481)
T ss_pred CCCCCCchhhhhcccccccccccccccCCc-eeeeeeeeeeccccc---eEehhhhcCcce---eeeeeccccceeeeec
Confidence 00 0 001111 1111 111122334 888999999999 9999999999999864
Q ss_pred cccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC
Q 037368 164 IARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP 242 (823)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~ 242 (823)
.+.-...+..++...+-++-.|.. .++..++ +.+.++||.+..-+...+|.+|...+.+..|.-+.+++.|+|
T Consensus 303 ----tge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSD 376 (481)
T KOG0300|consen 303 ----TGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSD 376 (481)
T ss_pred ----cCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCC
Confidence 333333344556677777777765 3444444 456999999854456677889999999999999999999988
Q ss_pred C-eEEEEecCC-CCccccc--cCCeEEEEe-eCcEEEEEEecCCCCccEEEEEeCCCCEEE
Q 037368 243 E-AVYFYEVDG-RGPCWAF--EGEKKLLGW-FRGYLLCVIADQRNSKNIFNVYDLKNRLIA 298 (823)
Q Consensus 243 ~-~I~i~~~~g-~~~~~~~--~g~~~~i~~-~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~ 298 (823)
| +|++|+.+. +.+..++ +.+...++. .|.-++.+-.| ...|++||++++.++
T Consensus 377 DrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD----NRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD----NRQVRLFDLNGNRLA 433 (481)
T ss_pred CceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC----CceEEEEecCCCccc
Confidence 7 899999863 2332222 222223333 23334444333 368999999886543
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=1.4e-13 Score=152.02 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=134.0
Q ss_pred eEEEeeC---CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 28 ITCCSSG---RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 28 is~~~~~---~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
|+|++++ +..|++||.||+|+.|| +..+-..+|.+-+.+|..+.|+| .++.++|+.+.|. |++||+
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~---------lqlWDl 206 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY---------LQLWDL 206 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce---------EEEeec
Confidence 7888876 46899999999999999 66665668888888999999998 5678999988887 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
...+ +|...+..| ..| |.|+.|+|+... ||+|+.|+.|++|+..- ...+.....+.-.||
T Consensus 207 Rqp~---------r~~~k~~AH--~Gp---V~c~nwhPnr~~---lATGGRDK~vkiWd~t~---~~~~~~~tInTiapv 266 (839)
T KOG0269|consen 207 RQPD---------RCEKKLTAH--NGP---VLCLNWHPNREW---LATGGRDKMVKIWDMTD---SRAKPKHTINTIAPV 266 (839)
T ss_pred cCch---------hHHHHhhcc--cCc---eEEEeecCCCce---eeecCCCccEEEEeccC---CCccceeEEeeccee
Confidence 9643 243333323 456 999999999999 99999999999998531 112222333446799
Q ss_pred ceEEEeecCCeEEEEEEc---CCeEEEEEecCCCCcceEEccCCCccceecccC
Q 037368 183 MGLGFRVDGQALQLFAVT---PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD 233 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t---~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~ 233 (823)
..|+|+|... +.|++++ +..|.+||++-.-.|..++..|...+..++|..
T Consensus 267 ~rVkWRP~~~-~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 267 GRVKWRPARS-YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eeeeeccCcc-chhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 9999999864 4565554 456999999754457788888877777777744
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=1.2e-13 Score=152.69 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=143.2
Q ss_pred CCEEEEEecCCeEEEEcCC----CeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLDRG----LKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~~----~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
.+.||+++..|.|-+||-+ .+.+..|..|+..|+++.|++ ..++|+|||.||+ ||+||+...+
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~---------vK~~DlR~~~--- 167 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT---------VKCWDLRSKK--- 167 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce---------EEEEeeeccc---
Confidence 4688999999999999922 345568999999999999997 4588999999998 9999998643
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEccccccccccee--EEecCCCCcceEE
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFK--LQVDNQCSVMGLG 186 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~--~~~~~~~~It~l~ 186 (823)
...+++.. . ..|..|+|+|.. .. +|+++.+|.+.+||. |.++.. .+..+.+||.++.
T Consensus 168 -------S~~t~~~n--S---ESiRDV~fsp~~~~~---F~s~~dsG~lqlWDl-----Rqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 168 -------SKSTFRSN--S---ESIRDVKFSPGYGNK---FASIHDSGYLQLWDL-----RQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred -------cccccccc--c---hhhhceeeccCCCce---EEEecCCceEEEeec-----cCchhHHHHhhcccCceEEEe
Confidence 11222211 1 238999999854 56 999999999999986 223222 1335799999999
Q ss_pred EeecCCeEEEEEEcC-CeEEEEEecCC-CCcceEEccCCCccceecccCCCe--EEEe---eCCeEEEEecCCCC-cccc
Q 037368 187 FRVDGQALQLFAVTP-NSVILFSLQNQ-PPKRQFLDNIGCSTNSVAMSDRLE--LIIG---RPEAVYFYEVDGRG-PCWA 258 (823)
Q Consensus 187 fs~dg~~~~l~~~t~-~~V~~~d~~~~-~~~~~~l~~~~~~~~~~~~s~~~~--liv~---~~~~I~i~~~~g~~-~~~~ 258 (823)
|+|++ ..|+++.. +.|++|++.+. ..+..+. +...+++++.|-|+.+ ++++ .+-.|++||+.-.- |-..
T Consensus 228 whPnr--~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 228 WHPNR--EWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred ecCCC--ceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeecccccccee
Confidence 99976 56666654 45999998753 2344444 4678899999999665 4443 23489999997221 1124
Q ss_pred ccCC---eEEEEeeC
Q 037368 259 FEGE---KKLLGWFR 270 (823)
Q Consensus 259 ~~g~---~~~i~~~~ 270 (823)
+..| ...+.|.+
T Consensus 305 ~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 305 FLEHTDSVTGIAWDS 319 (839)
T ss_pred eeccCccccceeccC
Confidence 4444 34567754
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=9.7e-13 Score=138.22 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=148.0
Q ss_pred CCCeEEEeeCC-C-EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 25 SGNITCCSSGR-G-KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 25 ~~~is~~~~~~-~-~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
+..|+|.++.+ + +|+.|+-.|.|++|. .+|.++..+.+|-.+|+|+.|+-+|.+++|+|.||. |.+|+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~---------V~vW~ 151 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGA---------VLVWL 151 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCcc---------EEEEE
Confidence 44678888753 5 456666999999999 899999999999999999999999999999999998 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC--CCcceEEEEEeCCeEEEEEcccccccccceeEEecCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA--PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQ 179 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~--~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~ 179 (823)
+...-.+ ...++|..++.+. +++.| |+.+.+.+.| .. +++.+.|.++++|+.. .+. .-.-...+
T Consensus 152 l~~lv~a-~~~~~~~p~~~f~--~Htls---ITDl~ig~Gg~~~r---l~TaS~D~t~k~wdlS----~g~-LLlti~fp 217 (476)
T KOG0646|consen 152 LTDLVSA-DNDHSVKPLHIFS--DHTLS---ITDLQIGSGGTNAR---LYTASEDRTIKLWDLS----LGV-LLLTITFP 217 (476)
T ss_pred EEeeccc-ccCCCccceeeec--cCcce---eEEEEecCCCccce---EEEecCCceEEEEEec----cce-eeEEEecC
Confidence 8653210 0122333444444 34566 9999988765 34 8999999999999864 221 11112237
Q ss_pred CCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCC---------------CcceEEccCCC--ccceecccCCCeEEEee
Q 037368 180 CSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQP---------------PKRQFLDNIGC--STNSVAMSDRLELIIGR 241 (823)
Q Consensus 180 ~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~---------------~~~~~l~~~~~--~~~~~~~s~~~~liv~~ 241 (823)
.+|++++..|-+ ..+|+++.. .|.+.++.+-. .....+.+|.. .+.|++++-||.+++++
T Consensus 218 ~si~av~lDpae--~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 218 SSIKAVALDPAE--RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred CcceeEEEcccc--cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 789999999987 578888765 47766654321 01223445544 89999999999988766
Q ss_pred C--CeEEEEecCCC
Q 037368 242 P--EAVYFYEVDGR 253 (823)
Q Consensus 242 ~--~~I~i~~~~g~ 253 (823)
+ +.|.+|++..+
T Consensus 296 d~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 296 DEDGKVCVWDIYSK 309 (476)
T ss_pred CCCCCEEEEecchH
Confidence 4 58999998754
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=8.3e-13 Score=138.44 Aligned_cols=216 Identities=17% Similarity=0.170 Sum_probs=146.9
Q ss_pred eEEEee-C-CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 28 ITCCSS-G-RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 28 is~~~~-~-~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
|-|++. + +.+|++|+.|..|+||+ .+++.++.|++|.+.|.+++|-...+-|.|+|.|.+ |++|+++.
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs---------vkvw~~~~ 275 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRS---------VKVWSIDQ 275 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCc---------eEEEehhH
Confidence 544443 3 46899999999999999 889999999999999999999877788999999998 99999985
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcce
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
.. .+.++ ++ ++ +.|.++....-.++ +.+|..|+++++|+.. + ..+-+...+.+.|.+
T Consensus 276 ~s----------~vetl--yG--Hq-d~v~~IdaL~reR~---vtVGgrDrT~rlwKi~---e--esqlifrg~~~sidc 332 (479)
T KOG0299|consen 276 LS----------YVETL--YG--HQ-DGVLGIDALSRERC---VTVGGRDRTVRLWKIP---E--ESQLIFRGGEGSIDC 332 (479)
T ss_pred hH----------HHHHH--hC--Cc-cceeeechhcccce---EEeccccceeEEEecc---c--cceeeeeCCCCCeee
Confidence 32 22232 22 22 33888887777777 9999999999999862 1 112233455779999
Q ss_pred EEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEE-ccCCC-----------ccceecccCCCeEEE-e-eCCeEEEEec
Q 037368 185 LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL-DNIGC-----------STNSVAMSDRLELII-G-RPEAVYFYEV 250 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l-~~~~~-----------~~~~~~~s~~~~liv-~-~~~~I~i~~~ 250 (823)
++|-.+. +++..+.++.|.+|++..+. |..+. ..||. .++.++..|...+++ | |+++|++|.+
T Consensus 333 v~~In~~--HfvsGSdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 333 VAFINDE--HFVSGSDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred EEEeccc--ceeeccCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 9998775 34444444569999987654 32222 13332 344555567666554 3 4679999998
Q ss_pred CCCCcc------ccccCCeEEEEe--eCcEEEEEEe
Q 037368 251 DGRGPC------WAFEGEKKLLGW--FRGYLLCVIA 278 (823)
Q Consensus 251 ~g~~~~------~~~~g~~~~i~~--~~~ylv~~s~ 278 (823)
+..-.. +.+.|-...+.| .+..++++..
T Consensus 410 ~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 410 EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 754221 233444444443 4555665543
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=7.6e-12 Score=125.39 Aligned_cols=251 Identities=17% Similarity=0.207 Sum_probs=158.9
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
+.||.+-++ .+.|++++.||++++|+ ....+...|+ |+++|.+++|.+ ...++|++-||. |+.+|+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~---------vr~~Dl 82 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQ---------VRRYDL 82 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCce---------EEEEEe
Confidence 348777765 36788899999999999 4444333344 899999999976 467899999998 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE-EecCCCC
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL-QVDNQCS 181 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~~~~~~ 181 (823)
.... . ..+..+.-| +.|+...+.-.. +++|+-|++|++|++. . +... ..+....
T Consensus 83 n~~~--------~-----~~igth~~~---i~ci~~~~~~~~---vIsgsWD~~ik~wD~R-----~-~~~~~~~d~~kk 137 (323)
T KOG1036|consen 83 NTGN--------E-----DQIGTHDEG---IRCIEYSYEVGC---VISGSWDKTIKFWDPR-----N-KVVVGTFDQGKK 137 (323)
T ss_pred cCCc--------c-----eeeccCCCc---eEEEEeeccCCe---EEEcccCccEEEEecc-----c-cccccccccCce
Confidence 8532 1 112222334 999999987778 9999999999999972 2 1111 2334557
Q ss_pred cceEEEeecCCeEEEEE-EcCCeEEEEEecCCCCcceEEc-cCCCccceecccCCCe-EEEe-eCCeEEE--EecCCC--
Q 037368 182 VMGLGFRVDGQALQLFA-VTPNSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLE-LIIG-RPEAVYF--YEVDGR-- 253 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~-~t~~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~-liv~-~~~~I~i--~~~~g~-- 253 (823)
|.++..+.+ .|.+ +.+..|.+||++.-..+.+.-+ .-....+|+++-|++. ++++ -++.|.+ ++....
T Consensus 138 Vy~~~v~g~----~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 138 VYCMDVSGN----RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEEeccCC----EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 888876643 4555 5566799999986543332221 2234567888888544 4444 4565544 443310
Q ss_pred CccccccCCe------------EEEEeeCc--EEEEEEecCCCCccEEEEEeCCCCEEEE--eccccceeEE-EeecCcE
Q 037368 254 GPCWAFEGEK------------KLLGWFRG--YLLCVIADQRNSKNIFNVYDLKNRLIAH--SLVVKEVSHM-LCEWGNI 316 (823)
Q Consensus 254 ~~~~~~~g~~------------~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~~~i~~--~~~i~~v~~v-~~~~~~~ 316 (823)
..-++|.-|. ..++++.- .++++. .||.|.+||+.++.... ...-.++..+ |+.+|..
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-----sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-----SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSL 288 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecC-----CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCe
Confidence 1124444331 12343332 355444 57999999999865332 2221223333 7777877
Q ss_pred EEEEc
Q 037368 317 ILVMT 321 (823)
Q Consensus 317 ~vvs~ 321 (823)
+.+++
T Consensus 289 LAia~ 293 (323)
T KOG1036|consen 289 LAIAS 293 (323)
T ss_pred EEEEe
Confidence 77765
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=5.2e-13 Score=135.86 Aligned_cols=222 Identities=10% Similarity=0.097 Sum_probs=157.6
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
|.-++.+.+.+++++.|.+|+.|.-++.+.+++-+- +.+..|..+..++.++|||++ |-|||....
T Consensus 112 V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~-----------i~IWD~~R~-- 177 (433)
T KOG0268|consen 112 VRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGEQ-----------IDIWDEQRD-- 177 (433)
T ss_pred eeeEEecccceEEecCCcceeeeeccCCcceeeecc-ccccccccccccccccccCce-----------eeecccccC--
Confidence 677777778899999999999999777777777654 367788887788999999986 889999853
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEE
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLG 186 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~ 186 (823)
+| ++++... + ..|.++.|+|-- +. ||++..|++|.|||.- ...+-.+++. .-.-.+|+
T Consensus 178 ------~P--v~smswG---~--Dti~svkfNpvETsI---Las~~sDrsIvLyD~R---~~~Pl~KVi~--~mRTN~Is 236 (433)
T KOG0268|consen 178 ------NP--VSSMSWG---A--DSISSVKFNPVETSI---LASCASDRSIVLYDLR---QASPLKKVIL--TMRTNTIC 236 (433)
T ss_pred ------Cc--cceeecC---C--CceeEEecCCCcchh---eeeeccCCceEEEecc---cCCccceeee--ecccccee
Confidence 34 3344322 1 239999999964 34 8888889999999852 2222222333 33456899
Q ss_pred EeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEee-CCeEEEEecCCCCcc--c-cc-
Q 037368 187 FRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGR-PEAVYFYEVDGRGPC--W-AF- 259 (823)
Q Consensus 187 fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~-~~~I~i~~~~g~~~~--~-~~- 259 (823)
|+|.+ ....+++. ..++.||+..-..+..+..+|.+.+-.+.|||.|+ |+.|+ |.+|+||.+++...- + +-
T Consensus 237 wnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR 314 (433)
T KOG0268|consen 237 WNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR 314 (433)
T ss_pred cCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh
Confidence 99965 33444444 46999999865567788888999999999999887 77665 569999998743211 1 10
Q ss_pred cCCeEEEEe--eCcEEEEEEecCCCCccEEEEEe
Q 037368 260 EGEKKLLGW--FRGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 260 ~g~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D 291 (823)
.-+..++.| +..|++++|. ++.|++|-
T Consensus 315 Mq~V~~Vk~S~Dskyi~SGSd-----d~nvRlWk 343 (433)
T KOG0268|consen 315 MQHVFCVKYSMDSKYIISGSD-----DGNVRLWK 343 (433)
T ss_pred hheeeEEEEeccccEEEecCC-----Ccceeeee
Confidence 112334444 5679998884 58999995
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.49 E-value=2.6e-11 Score=130.01 Aligned_cols=243 Identities=15% Similarity=0.150 Sum_probs=149.5
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEE-EEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFL-VTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l-~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
..+++++.||.|++|| .+++.++.+..|. .+..++++|+|+.+ ++++.|++ |++||+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~---------v~~~d~~~~-------- 63 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDT---------IQVIDLATG-------- 63 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCe---------EEEEECCCC--------
Confidence 3567889999999999 6788888888665 46789999999876 56677887 999998742
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCC
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~ 192 (823)
..++.+... ..+..++++|+++. ++++ ..+|.|.+|+.. ..+.....+....+.+++|+|+|+
T Consensus 64 --~~~~~~~~~------~~~~~~~~~~~g~~---l~~~~~~~~~l~~~d~~-----~~~~~~~~~~~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 64 --EVIGTLPSG------PDPELFALHPNGKI---LYIANEDDNLVTVIDIE-----TRKVLAEIPVGVEPEGMAVSPDGK 127 (300)
T ss_pred --cEEEeccCC------CCccEEEECCCCCE---EEEEcCCCCeEEEEECC-----CCeEEeEeeCCCCcceEEECCCCC
Confidence 233333211 12577899999987 6554 558999999863 111111223334578999999984
Q ss_pred eEEEEEEcCC--eEEEEEecCCCCcceEEccCCCccceecccCCCeEE-Eee--CCeEEEEecCCCCcc--cccc--C--
Q 037368 193 ALQLFAVTPN--SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGR--PEAVYFYEVDGRGPC--WAFE--G-- 261 (823)
Q Consensus 193 ~~~l~~~t~~--~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~--~~~I~i~~~~g~~~~--~~~~--g-- 261 (823)
.++++..+ .+..|+..+.. ...... .+..+.++.|+|+|+.+ ++. ++.|++|+.+..... +.+. +
T Consensus 128 --~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 128 --IVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred --EEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence 55555543 36677876432 222221 23345678899998754 443 568999998732111 1111 1
Q ss_pred ----CeEEE--EeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccc-cceeEE-EeecCcEEEEE
Q 037368 262 ----EKKLL--GWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV-KEVSHM-LCEWGNIILVM 320 (823)
Q Consensus 262 ----~~~~i--~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i-~~v~~v-~~~~~~~~vvs 320 (823)
.+..+ .+.+.++++... .+.+|.+||+.+..+...... ..+..+ +++++..++++
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALG----PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred cccCCccceEECCCCCEEEEEcC----CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence 11223 345666555433 245899999976544321111 113333 56677765554
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.9e-12 Score=146.05 Aligned_cols=198 Identities=12% Similarity=0.094 Sum_probs=147.8
Q ss_pred CCCCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 24 VSGNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 24 ~~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
.+..|+|++...+++++||.+++|.+|. .+++.-.-+.-++.++.+++++.+|+++|.+|+|-. ||+-++
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~---------vK~~~~ 125 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTA---------VKLLNL 125 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCcee---------EEEEec
Confidence 4566889998899999999999999999 666543234456789999999999999999999987 999988
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccc-cc-eeEE-----
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERI-TR-FKLQ----- 175 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~-~k-~~~~----- 175 (823)
.... ...+++.+ ..| |.++.++|++.. +|+.+.||+|.+|+.+ ++. .+ ..-+
T Consensus 126 ~D~s----------~~~~lrgh--~ap---Vl~l~~~p~~~f---LAvss~dG~v~iw~~~---~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 126 DDSS----------QEKVLRGH--DAP---VLQLSYDPKGNF---LAVSSCDGKVQIWDLQ---DGILSKTLTGVDKDNE 184 (933)
T ss_pred cccc----------hheeeccc--CCc---eeeeeEcCCCCE---EEEEecCceEEEEEcc---cchhhhhcccCCcccc
Confidence 7421 23344533 456 999999999999 9999999999999864 110 00 0001
Q ss_pred ecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc-cCCCccceecccCCCeEEEee--CCeEEEEecCC
Q 037368 176 VDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDG 252 (823)
Q Consensus 176 ~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g 252 (823)
.+...+++-++|+|+|. ..++.+.++.|.+|+..+........+ .+...+.+++|+|.|++++++ ++.|-+|+++.
T Consensus 185 ~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 11245677899999964 678888889999999887543222223 233447889999999988765 47899999873
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-12 Score=127.00 Aligned_cols=243 Identities=14% Similarity=0.151 Sum_probs=161.5
Q ss_pred eecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEe-
Q 037368 61 QAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL- 139 (823)
Q Consensus 61 ~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~- 139 (823)
..|...|..+..+=-|+.|||||.|++ |||+..... +....+.+++.+ ..| |+-++|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~t---------VkIf~v~~n-------~~s~ll~~L~Gh--~GP---Vwqv~wah 66 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGT---------VKIFEVRNN-------GQSKLLAELTGH--SGP---VWKVAWAH 66 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCcc---------EEEEEEcCC-------CCceeeeEecCC--CCC---eeEEeecc
Confidence 468888888777778999999999998 999999852 222456676644 567 9999994
Q ss_pred c-CCCCcceEEEEEeCCeEEEEEcccccccccceeEE---ecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCC-
Q 037368 140 E-EAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ---VDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQP- 213 (823)
Q Consensus 140 ~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~---~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~- 213 (823)
| -|.. +|+.+-||+|++|+-. +.+.... ..++..|++++|.|.+....|++++ ++.|.+.+.+..+
T Consensus 67 Pk~G~i---LAScsYDgkVIiWke~-----~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 67 PKFGTI---LASCSYDGKVIIWKEE-----NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred cccCcE---eeEeecCceEEEEecC-----CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 4 5567 9999999999999742 2222222 2357899999999987445666665 5568888876542
Q ss_pred -CcceEEccCCCccceecccCC---C------------eEEEee-CCeEEEEecCC-CCcc-ccccCCe---EEEEe---
Q 037368 214 -PKRQFLDNIGCSTNSVAMSDR---L------------ELIIGR-PEAVYFYEVDG-RGPC-WAFEGEK---KLLGW--- 268 (823)
Q Consensus 214 -~~~~~l~~~~~~~~~~~~s~~---~------------~liv~~-~~~I~i~~~~g-~~~~-~~~~g~~---~~i~~--- 268 (823)
...++...|...+++++|.|. | +|+.|+ |+.|++|+-+. +... ..+++|+ +.++|
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 234444567677788888763 3 466654 56899998753 1111 2366663 23344
Q ss_pred ---eCcEEEEEEecCCCCccEEEEEeCCCCEEEEec----cccc-eeEE-EeecCcEEEEEcCCeEEEEeecChHHHH
Q 037368 269 ---FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSL----VVKE-VSHM-LCEWGNIILVMTDKSVLCIGEKDMESKL 337 (823)
Q Consensus 269 ---~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~----~i~~-v~~v-~~~~~~~~vvs~~~~v~~l~~~~~~~~i 337 (823)
-..++++++ .|+++.||......--++. .++. +.++ ++..|.++.++..+..+.++.-+.+-+|
T Consensus 219 ~gl~~s~iAS~S-----qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 219 VGLPKSTIASCS-----QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred cCCCceeeEEec-----CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 245777777 5699999977643322222 2344 4444 6777888888776666677655555443
No 121
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.47 E-value=2.9e-13 Score=131.25 Aligned_cols=215 Identities=16% Similarity=0.199 Sum_probs=149.1
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
.-++|+.|-+-++|| -+|..+.+|. |..-|..++|+.|.+.|+|+|.+.- +||+|+.+.+. .|
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekl---------lrvfdln~p~A------pp 136 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKL---------LRVFDLNRPKA------PP 136 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHH---------hhhhhccCCCC------Cc
Confidence 447889999999999 7888888886 8888999999999999999999986 99999997542 12
Q ss_pred ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEE
Q 037368 116 DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 116 ~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~ 195 (823)
. .+. .+| +.|..+-|...-++ |.+...|++|++||. +..+...-.+-+.+|+++..+++| .+
T Consensus 137 ~---E~~----ght-g~Ir~v~wc~eD~~---iLSSadd~tVRLWD~-----rTgt~v~sL~~~s~VtSlEvs~dG--~i 198 (334)
T KOG0278|consen 137 K---EIS----GHT-GGIRTVLWCHEDKC---ILSSADDKTVRLWDH-----RTGTEVQSLEFNSPVTSLEVSQDG--RI 198 (334)
T ss_pred h---hhc----CCC-CcceeEEEeccCce---EEeeccCCceEEEEe-----ccCcEEEEEecCCCCcceeeccCC--CE
Confidence 1 222 223 34888888777677 888899999999985 222222223457899999999999 57
Q ss_pred EEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCC--eEEEEecCC-CCc-cccccCC---eEE--E
Q 037368 196 LFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPE--AVYFYEVDG-RGP-CWAFEGE---KKL--L 266 (823)
Q Consensus 196 l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~--~I~i~~~~g-~~~-~~~~~g~---~~~--i 266 (823)
|.++..++|..||...-+ +.+..+ ..+.+.+.++.|+..+.|++++ .++-||-.. ... ++ ..|| ..+ +
T Consensus 199 lTia~gssV~Fwdaksf~-~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSFG-LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRF 275 (334)
T ss_pred EEEecCceeEEecccccc-ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEE
Confidence 888888899999986533 223222 3466777888897776665554 455555431 111 11 1343 222 3
Q ss_pred EeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 267 GWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 267 ~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
++.|.--+++| +|++|+||...
T Consensus 276 SPdGE~yAsGS-----EDGTirlWQt~ 297 (334)
T KOG0278|consen 276 SPDGELYASGS-----EDGTIRLWQTT 297 (334)
T ss_pred CCCCceeeccC-----CCceEEEEEec
Confidence 33444444444 68999999764
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=137.74 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=125.0
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc----------CCCeeeEeEeecccceeEEEEecCC--CEEEEEecCCCCcccc
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD----------RGLKFNFGFQAHSSSVLFLQQLKQR--NFLVTVGEDEQVSAQQ 92 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d----------~~~~~~~~~~~H~~~V~~i~~~~~~--~~l~s~s~D~~~~~~~ 92 (823)
.|||+-+.+ .++++|+.||.|++|. .+-++++.|..|+-+|+.+.+.+.| ..|+|+|+|.|
T Consensus 125 ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t----- 199 (476)
T KOG0646|consen 125 SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT----- 199 (476)
T ss_pred ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce-----
Confidence 589998854 5899999999999996 1345778899999999999998754 67999999998
Q ss_pred cceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccc--cc--
Q 037368 93 SAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIAR--ER-- 168 (823)
Q Consensus 93 ~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~--~~-- 168 (823)
+|+||+.... ++-++. + +.+ ++|++++|.... +-+|+.+|+|.+....-.. +.
T Consensus 200 ----~k~wdlS~g~----------LLlti~-f--p~s---i~av~lDpae~~---~yiGt~~G~I~~~~~~~~~~~~~~v 256 (476)
T KOG0646|consen 200 ----IKLWDLSLGV----------LLLTIT-F--PSS---IKAVALDPAERV---VYIGTEEGKIFQNLLFKLSGQSAGV 256 (476)
T ss_pred ----EEEEEeccce----------eeEEEe-c--CCc---ceeEEEcccccE---EEecCCcceEEeeehhcCCcccccc
Confidence 9999998532 444442 2 334 999999999999 9999999999876421000 00
Q ss_pred --------ccceeEEecCCC--CcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecc
Q 037368 169 --------ITRFKLQVDNQC--SVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAM 231 (823)
Q Consensus 169 --------~~k~~~~~~~~~--~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~ 231 (823)
+...+.+..+.+ +||+|+.+-|| ..|..+.. ++|.+||+..++ ..+++.....+|+-+.+
T Consensus 257 ~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi~S~Q-~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 257 NQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDIYSKQ-CIRTLQTSKGPVTNLQI 327 (476)
T ss_pred cccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEecchHH-HHHHHhhhccccceeEe
Confidence 112222333444 99999999999 57777765 569999998764 44444323344443333
No 123
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.45 E-value=5e-15 Score=140.92 Aligned_cols=133 Identities=35% Similarity=0.561 Sum_probs=113.8
Q ss_pred CCCCHHHHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcc
Q 037368 564 MLPSPVDFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAE 641 (823)
Q Consensus 564 ~~~~~~~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (823)
...++..++..|.+ .|..++.||+.++...+.. .+.+||.|+++|++. .+
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~--~~~~~~~L~~ly~~~--~~------------------------ 57 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKENKEN--NPDLHTLLLELYIKY--DP------------------------ 57 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC---SHHHHHHHHHHHHCT--TT------------------------
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhccccc--CHHHHHHHHHHHHhc--CC------------------------
Confidence 35667789999977 7999999999999766432 479999999999997 11
Q ss_pred cCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHhc
Q 037368 642 YNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQA 721 (823)
Q Consensus 642 ~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~~ 721 (823)
.+++++||+. +..||++.|+.+|..+++.++.++||+|+|+|++|++++...
T Consensus 58 ---------------------~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~ 109 (143)
T PF00637_consen 58 ---------------------YEKLLEFLKT-------SNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKL 109 (143)
T ss_dssp ---------------------CCHHHHTTTS-------SSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSST
T ss_pred ---------------------chHHHHHccc-------ccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1699999998 777999999999999999999999999999999999985556
Q ss_pred CChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCC
Q 037368 722 HDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGE 758 (823)
Q Consensus 722 ~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~ 758 (823)
+|++.|+++|++.+ ++++|..+++++++.++
T Consensus 110 ~~~~~a~e~~~~~~------~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 110 KDYEEAIEYAKKVD------DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HCSCCCTTTGGGCS------SSHHHHHHHHHHCTSTC
T ss_pred ccHHHHHHHHHhcC------cHHHHHHHHHHHHhcCc
Confidence 89999999999987 67999999999998765
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.44 E-value=1.7e-11 Score=120.40 Aligned_cols=197 Identities=12% Similarity=0.122 Sum_probs=145.2
Q ss_pred eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEE
Q 037368 59 GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLV 138 (823)
Q Consensus 59 ~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~ 138 (823)
-++||..++++|.+..+|++|.||+.|.+ ..||--.. ...+.+.+.| + +.|+|+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~---------~~vw~s~n----------GerlGty~GH--t---GavW~~Di 60 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDST---------PTVWYSLN----------GERLGTYDGH--T---GAVWCCDI 60 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCC---------ceEEEecC----------CceeeeecCC--C---ceEEEEEe
Confidence 46899999999999999999999999998 88996542 2357777644 3 33999999
Q ss_pred ecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC------eEEEEEecCC
Q 037368 139 LEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN------SVILFSLQNQ 212 (823)
Q Consensus 139 ~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~------~V~~~d~~~~ 212 (823)
+.+.+. +.+|++|.+++||+.. ..|+...+..+.+|..+.|+.+|+ .+.+++++ .|.+++++..
T Consensus 61 d~~s~~---liTGSAD~t~kLWDv~-----tGk~la~~k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 61 DWDSKH---LITGSADQTAKLWDVE-----TGKQLATWKTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred cCCcce---eeeccccceeEEEEcC-----CCcEEEEeecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCC
Confidence 999999 9999999999999974 345555556688999999999994 44444432 3889998732
Q ss_pred C------CcceEEccCCCccceecccCCCeEEEeeC--CeEEEEecCCCCccc--cccCC-----eEEEEeeCcEEEEEE
Q 037368 213 P------PKRQFLDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEVDGRGPCW--AFEGE-----KKLLGWFRGYLLCVI 277 (823)
Q Consensus 213 ~------~~~~~l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~~~~~--~~~g~-----~~~i~~~~~ylv~~s 277 (823)
. .|...+..+...+....|+|-+++++++. +.|..|+++. |..+ .-+.| ..+++....|.++.|
T Consensus 131 ~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~-g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 131 SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART-GKELVDSDEEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred hhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc-CceeeechhhhccccccccccCCcceEEecc
Confidence 1 24444444556777888999998887664 5899999873 3211 11112 224566678999888
Q ss_pred ecCCCCccEEEEEeCCCC
Q 037368 278 ADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 278 ~d~~~~~~~I~I~D~~~~ 295 (823)
. |.+-++||..+=
T Consensus 210 ~-----Dttakl~D~~tl 222 (327)
T KOG0643|consen 210 K-----DTTAKLVDVRTL 222 (327)
T ss_pred c-----Cccceeeeccce
Confidence 5 589999998763
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.7e-12 Score=129.88 Aligned_cols=192 Identities=13% Similarity=0.057 Sum_probs=138.0
Q ss_pred CCCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
+..+|.+++.|-.|.+|+-.|+.+.+...-...-...+++|+|.+++++|---. |+||..-=.. .|
T Consensus 198 ~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD---------VkVwE~~f~k-----dG 263 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD---------VKVWEPIFTK-----DG 263 (420)
T ss_pred CceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCC---------ceEEEEEecc-----Cc
Confidence 456889999999999999668888788777778888999999999999986543 9999863211 12
Q ss_pred CCc-eEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--------CCCCcce
Q 037368 114 SPD-CIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD--------NQCSVMG 184 (823)
Q Consensus 114 ~~~-~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~--------~~~~It~ 184 (823)
+.+ ..+.+.+-+++ +.|+++||+++... +++.+.||++++|+.++-...+.-+.++.+ +.+|+ .
T Consensus 264 ~fqev~rvf~LkGH~---saV~~~aFsn~S~r---~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-R 336 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQ---SAVLAAAFSNSSTR---AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-R 336 (420)
T ss_pred chhhhhhhheeccch---hheeeeeeCCCcce---eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-E
Confidence 221 12222222223 33999999999999 999999999999998764333222222221 24556 8
Q ss_pred EEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEE-ccCCCccceecccCCCeEEEee-CCeEEEEe
Q 037368 185 LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL-DNIGCSTNSVAMSDRLELIIGR-PEAVYFYE 249 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l-~~~~~~~~~~~~s~~~~liv~~-~~~I~i~~ 249 (823)
|+.+|.| ..|+++..+.+.+|..+... ....+ +-|+..+.|++|+++|++++.. +..+++..
T Consensus 337 L~lsP~g--~~lA~s~gs~l~~~~se~g~-~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 337 LELSPSG--DSLAVSFGSDLKVFASEDGK-DYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred EEeCCCC--cEEEeecCCceEEEEcccCc-cchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 9999999 57888888889999876532 22233 3577889999999999987654 55788764
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=4e-11 Score=131.35 Aligned_cols=235 Identities=14% Similarity=0.182 Sum_probs=154.1
Q ss_pred cCCCCeEEEeeC--CCEEEEEecCCeEEEEc--CCCeeeEeEeecc-cceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 23 EVSGNITCCSSG--RGKVVIGCDDGAVSLLD--RGLKFNFGFQAHS-SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 23 ~~~~~is~~~~~--~~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~-~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+.+..|.|++.. ++.||+|-.+|.|.+|+ .++-+...+.+|. .+|.+++|. +|..|.|.|-+|+ |
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~---------i 92 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGS---------I 92 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCce---------E
Confidence 346789999975 46899999999999999 4455666788886 789999998 4678999999998 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
.-||+.+.. | ...+. ....+ |+++|.+|.... +++|+.||.+..+.+.. +.-.-.+.+--
T Consensus 93 ~EwDl~~lk--------~--~~~~d--~~gg~---IWsiai~p~~~~---l~IgcddGvl~~~s~~p--~~I~~~r~l~r 152 (691)
T KOG2048|consen 93 TEWDLHTLK--------Q--KYNID--SNGGA---IWSIAINPENTI---LAIGCDDGVLYDFSIGP--DKITYKRSLMR 152 (691)
T ss_pred EEEecccCc--------e--eEEec--CCCcc---eeEEEeCCccce---EEeecCCceEEEEecCC--ceEEEEeeccc
Confidence 999998532 2 22222 22334 999999999999 99999999555555421 00000011112
Q ss_pred CCCCcceEEEeecCCeEEEEEEcCCe-EEEEEecCCCCcceE----EccCCCccceeccc----CCCeEEEe-eCCeEEE
Q 037368 178 NQCSVMGLGFRVDGQALQLFAVTPNS-VILFSLQNQPPKRQF----LDNIGCSTNSVAMS----DRLELIIG-RPEAVYF 247 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~~~~~~~~~~----l~~~~~~~~~~~~s----~~~~liv~-~~~~I~i 247 (823)
.++.|-+|+|++++ ..++.++.++ |++||...... ... +++-+..-.++.|+ .+++++.| +.++|.+
T Consensus 153 q~sRvLslsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTG--TKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTF 229 (691)
T ss_pred ccceEEEEEecCCc--cEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEE
Confidence 36899999999998 4577777766 99999875432 221 12222212344444 67877776 3479999
Q ss_pred EecCCCCccc---cccCCeEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 248 YEVDGRGPCW---AFEGEKKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 248 ~~~~g~~~~~---~~~g~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
||...-.... ...++...++. ..+++++...| +.|.-|-..++
T Consensus 230 Wd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd-----~~ii~~~~~~~ 277 (691)
T KOG2048|consen 230 WDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD-----PKIIQYSLTTN 277 (691)
T ss_pred EcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC-----CceEEEEecCC
Confidence 9976321111 22344444443 34677777644 56666655443
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2e-11 Score=122.38 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=144.1
Q ss_pred CCCe-EEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 25 SGNI-TCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 25 ~~~i-s~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
...+ .|++.+...+++|+.||.|+++|.+.........|..+|.+|...+..+.++|+|.|++ ||+||..
T Consensus 54 ~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~---------ik~wD~R 124 (323)
T KOG1036|consen 54 GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKT---------IKFWDPR 124 (323)
T ss_pred CCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCcc---------EEEEecc
Confidence 4556 55555668999999999999999554434467789999999999998899999999998 9999987
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee-EEecC--CC
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK-LQVDN--QC 180 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~-~~~~~--~~ 180 (823)
.. .+..++. .+ .+|.|+.... +. +++|+.+..|.+||... .... ...++ +-
T Consensus 125 ~~----------~~~~~~d-----~~-kkVy~~~v~g--~~---LvVg~~~r~v~iyDLRn-----~~~~~q~reS~lky 178 (323)
T KOG1036|consen 125 NK----------VVVGTFD-----QG-KKVYCMDVSG--NR---LVVGTSDRKVLIYDLRN-----LDEPFQRRESSLKY 178 (323)
T ss_pred cc----------ccccccc-----cC-ceEEEEeccC--CE---EEEeecCceEEEEEccc-----ccchhhhcccccee
Confidence 31 1222222 11 3477777665 47 99999999999998621 1111 11122 56
Q ss_pred CcceEEEeecCCeEEEEEEcCCeEEEEEecCCC---CcceEEccC---------CCccceecccC-CCeEEEeeCC-eEE
Q 037368 181 SVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP---PKRQFLDNI---------GCSTNSVAMSD-RLELIIGRPE-AVY 246 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~---~~~~~l~~~---------~~~~~~~~~s~-~~~liv~~~~-~I~ 246 (823)
++.+|++-|++. ..+..+.+++|.+=.++... ..+..|..| ..+|+.++|+| -|.|++|++| -|.
T Consensus 179 qtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 179 QTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVN 257 (323)
T ss_pred EEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEE
Confidence 789999999653 35565667776543333321 122333222 24778899998 6788987665 677
Q ss_pred EEecCCCCcccc---ccCCeEEEEe--eCcEEEEEE
Q 037368 247 FYEVDGRGPCWA---FEGEKKLLGW--FRGYLLCVI 277 (823)
Q Consensus 247 i~~~~g~~~~~~---~~g~~~~i~~--~~~ylv~~s 277 (823)
+|+...+..... +++....+++ +|..|++++
T Consensus 258 ~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 258 IWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999875544322 3443444444 566777765
No 128
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.42 E-value=4.3e-10 Score=119.90 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=91.4
Q ss_pred EEEEEecCCeEEEEcCCCee-----------------------------------------eEeEeecccceeEEEEecC
Q 037368 37 KVVIGCDDGAVSLLDRGLKF-----------------------------------------NFGFQAHSSSVLFLQQLKQ 75 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d~~~~~-----------------------------------------~~~~~~H~~~V~~i~~~~~ 75 (823)
-|++++.||.|++|+++|-+ +-.|++|.|-|.++.|+|.
T Consensus 118 gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 118 GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ 197 (737)
T ss_pred eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcc
Confidence 57788899999999854321 1268899999999999999
Q ss_pred CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC
Q 037368 76 RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG 155 (823)
Q Consensus 76 ~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG 155 (823)
.++++|+|+|-. .||||-.. .+.. + ...+.+| |++|||.|| .. +|+|+.+
T Consensus 198 s~lI~sgGED~k---------fKvWD~~G---------~~Lf--~--S~~~ey~---ITSva~npd-~~---~~v~S~n- 247 (737)
T KOG1524|consen 198 SNIIASGGEDFR---------FKIWDAQG---------ANLF--T--SAAEEYA---ITSVAFNPE-KD---YLLWSYN- 247 (737)
T ss_pred ccceeecCCcee---------EEeecccC---------cccc--c--CChhccc---eeeeeeccc-cc---eeeeeee-
Confidence 999999999998 99999864 2211 1 1122567 999999999 77 8888633
Q ss_pred eEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCe--EEEEEec
Q 037368 156 CIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNS--VILFSLQ 210 (823)
Q Consensus 156 ~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~--V~~~d~~ 210 (823)
+.++-. ..-+.|..++||+|| ..+.+++..+ |..+-++
T Consensus 248 t~R~~~---------------p~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~~ie 287 (737)
T KOG1524|consen 248 TARFSS---------------PRVGSIFNLSWSADG--TQATCGTSTGQLIVAYAIE 287 (737)
T ss_pred eeeecC---------------CCccceEEEEEcCCC--ceeeccccCceEEEeeeeh
Confidence 333111 125789999999999 4666666554 3444443
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.6e-11 Score=127.33 Aligned_cols=280 Identities=15% Similarity=0.134 Sum_probs=175.7
Q ss_pred CCCCCCCCcCCCCeEEEeeCCC--EEEEEecCCeEEEEcCCCee---eEeEeecccceeEEEEecCCC-EEEEEecCCCC
Q 037368 15 GGKSTIPEEVSGNITCCSSGRG--KVVIGCDDGAVSLLDRGLKF---NFGFQAHSSSVLFLQQLKQRN-FLVTVGEDEQV 88 (823)
Q Consensus 15 ~~~~~~~~~~~~~is~~~~~~~--~l~~gs~dG~i~~~d~~~~~---~~~~~~H~~~V~~i~~~~~~~-~l~s~s~D~~~ 88 (823)
++|.|........|+|+.++++ .+++|+.||++++|.-+|+. +.+..--..+|.+.+|.|+|. .++|+|--.-
T Consensus 203 lkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky- 281 (514)
T KOG2055|consen 203 LKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKY- 281 (514)
T ss_pred ecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceE-
Confidence 3343444455667999999874 67999999999999855553 333333357999999999998 7777776553
Q ss_pred cccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccc
Q 037368 89 SAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARER 168 (823)
Q Consensus 89 ~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~ 168 (823)
+..||+.+... . -++.+. +.++..+..+.++|+++. ||+.+.+|-|+|....
T Consensus 282 --------~ysyDle~ak~------~--k~~~~~----g~e~~~~e~FeVShd~~f---ia~~G~~G~I~lLhak----- 333 (514)
T KOG2055|consen 282 --------LYSYDLETAKV------T--KLKPPY----GVEEKSMERFEVSHDSNF---IAIAGNNGHIHLLHAK----- 333 (514)
T ss_pred --------EEEeecccccc------c--cccCCC----CcccchhheeEecCCCCe---EEEcccCceEEeehhh-----
Confidence 99999975321 0 011111 112223889999999999 9999999999988532
Q ss_pred ccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCcc-ceecccCCCeE-EEeeCC-eE
Q 037368 169 ITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCST-NSVAMSDRLEL-IIGRPE-AV 245 (823)
Q Consensus 169 ~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~-~~~~~s~~~~l-iv~~~~-~I 245 (823)
..-.-.-+.-++.|.++.|+.||+ .+++++.+++|++||+..+ .+.+.+...|+-- .++|.|++|.+ ++|++. -|
T Consensus 334 T~eli~s~KieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 334 TKELITSFKIEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhhhhheeeeccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 000000112378899999999985 4555556678999999875 3556664455432 35677788875 556664 56
Q ss_pred EEEecCCC------CccccccC---CeEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEEEEecc------ccceeE
Q 037368 246 YFYEVDGR------GPCWAFEG---EKKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLV------VKEVSH 308 (823)
Q Consensus 246 ~i~~~~g~------~~~~~~~g---~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~------i~~v~~ 308 (823)
.||+-+.. .|..++.. ....+.+ +...|+++|.. ....+++.-+-...+ |+.. +.-++.
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~---~knalrLVHvPS~TV-FsNfP~~n~~vg~vtc 487 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV---KKNALRLVHVPSCTV-FSNFPTSNTKVGHVTC 487 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc---cccceEEEeccceee-eccCCCCCCcccceEE
Confidence 79985421 11222221 1223333 34455555533 356778776654433 3321 222555
Q ss_pred E-EeecCcEEEEEcCCeEEEEe
Q 037368 309 M-LCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 309 v-~~~~~~~~vvs~~~~v~~l~ 329 (823)
+ |++.++++.++.++.-+.|+
T Consensus 488 ~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 488 MAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred EEecCCCceEEeecCCCceeeE
Confidence 5 88889999998766544444
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.41 E-value=6.9e-12 Score=136.16 Aligned_cols=226 Identities=14% Similarity=0.168 Sum_probs=147.0
Q ss_pred CEEEEEecCCeEEEEcCC---Ce----eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRG---LK----FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE 108 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~---~~----~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~ 108 (823)
..|++|..+|.|.++|.. +. .++.|.+|...|.++.+.|....|+|++.|.| +|+||+...
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT---------~r~Wdvk~s--- 132 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDST---------IRPWDVKTS--- 132 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCce---------eeeeeeccc---
Confidence 467999999999999932 22 13567799999999999997778999999998 999999842
Q ss_pred CCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccc---------------cccc---
Q 037368 109 GTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIA---------------RERI--- 169 (823)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~---------------~~~~--- 169 (823)
.+++.--..++.. .|.++||.|.. .. +++|+.||.|.||+.... +..+
T Consensus 133 -------~l~G~~~~~GH~~---SvkS~cf~~~n~~v---F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 133 -------RLVGGRLNLGHTG---SVKSECFMPTNPAV---FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred -------eeecceeeccccc---ccchhhhccCCCcc---eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 2333211112233 39999999854 46 999999999999984210 0000
Q ss_pred c---ceeE--EecC----CCCcceEEEeecCCeEEEEEEc--CCeEEEEEecCCC-----CcceEEc--cC---CCccce
Q 037368 170 T---RFKL--QVDN----QCSVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQP-----PKRQFLD--NI---GCSTNS 228 (823)
Q Consensus 170 ~---k~~~--~~~~----~~~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~-----~~~~~l~--~~---~~~~~~ 228 (823)
. +.++ .... .+.||.+.|-.+. .|+.+. |+.|++||++... .+..... .+ ...+.|
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~---tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDES---TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEeccc---eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0 1111 1111 2457777776553 455554 4569999997532 1222211 11 123345
Q ss_pred ecccCCCe--EEEeeCCeEEEEecCCC--CccccccCC-------eEEEEeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 229 VAMSDRLE--LIIGRPEAVYFYEVDGR--GPCWAFEGE-------KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 229 ~~~s~~~~--liv~~~~~I~i~~~~g~--~~~~~~~g~-------~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
++....|. |+.+.|+.|++|++.+- ++...+.|+ +..+.|++.|++.++. ++...||.+.+
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-----d~~ayiw~vs~ 348 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-----DEQAYIWVVSS 348 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-----CcceeeeeecC
Confidence 56655554 44466889999998643 333445554 3467889999999985 47889998765
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.41 E-value=3.5e-12 Score=142.25 Aligned_cols=190 Identities=20% Similarity=0.212 Sum_probs=140.2
Q ss_pred CCeEEEe--eCCCEEEEEecCCeEEEEc-CCCeeeEeE---eecccceeEEEEecCCCEEEEEecCCCCcccccceeEEE
Q 037368 26 GNITCCS--SGRGKVVIGCDDGAVSLLD-RGLKFNFGF---QAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 26 ~~is~~~--~~~~~l~~gs~dG~i~~~d-~~~~~~~~~---~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
..++|++ +++++.++|++.|+|-+|+ .+|-..++| .+|.++|+.++.+.-++.++|+|.||- +++
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi---------lkf 519 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI---------LKF 519 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce---------EEE
Confidence 3455554 3568889999999999999 778788889 589999999999888899999999997 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQ 179 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~ 179 (823)
||+.+.. .+.++++. .+ ++++..+..... +|++..|=.|+++|... + .-.+.+..+.
T Consensus 520 w~f~~k~----------l~~~l~l~---~~---~~~iv~hr~s~l---~a~~~ddf~I~vvD~~t-~---kvvR~f~gh~ 576 (910)
T KOG1539|consen 520 WDFKKKV----------LKKSLRLG---SS---ITGIVYHRVSDL---LAIALDDFSIRVVDVVT-R---KVVREFWGHG 576 (910)
T ss_pred EecCCcc----------eeeeeccC---CC---cceeeeeehhhh---hhhhcCceeEEEEEchh-h---hhhHHhhccc
Confidence 9998532 34555542 33 788888888778 99999999999998531 0 1122244578
Q ss_pred CCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe--eC-CeEEEEec
Q 037368 180 CSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG--RP-EAVYFYEV 250 (823)
Q Consensus 180 ~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~--~~-~~I~i~~~ 250 (823)
+.||.+.|||||+ -++.++.|+.|++||+.+... .-.+ ....+...+.|||+|.+++. .+ .+|++|.-
T Consensus 577 nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~l-ID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 577 NRITDMTFSPDGR-WLISASMDSTIRTWDLPTGTL-IDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cceeeeEeCCCCc-EEEEeecCCcEEEEeccCcce-eeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 8999999999995 344444567899999975432 1211 12234456789999987643 34 58999964
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.41 E-value=4e-12 Score=130.14 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=109.9
Q ss_pred CCEEEEEecCCeEEEEc-CCC---eeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RGL---KFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~---~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
.+.+++||-||+|+||| +.+ -.+ ++++|.+-|+-|+|+..-.+|||+++||+ ++||||+...
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt---------~~iwDLR~~~---- 335 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGT---------LSIWDLRQFK---- 335 (440)
T ss_pred CceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCce---------EEEEEhhhcc----
Confidence 47889999999999999 665 234 56999999999999988889999999998 9999998653
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccc------c--c----cceeE--E
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARE------R--I----TRFKL--Q 175 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~------~--~----~k~~~--~ 175 (823)
.++| +.+++.| ..| |+||.|+|.- +. ||+++.|..|.+|+..+-++ . . -.+++ +
T Consensus 336 -~~~p--VA~fk~H--k~p---ItsieW~p~e~s~---iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 336 -SGQP--VATFKYH--KAP---ITSIEWHPHEDSV---IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred -CCCc--ceeEEec--cCC---eeEEEeccccCce---EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 3344 5677655 467 9999999853 45 89999999999998543222 0 0 11222 3
Q ss_pred ecCCCCcceEEEeecCCeEEEEEEcCCeEEEEE
Q 037368 176 VDNQCSVMGLGFRVDGQALQLFAVTPNSVILFS 208 (823)
Q Consensus 176 ~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d 208 (823)
+.+...|..|+|.+.-. .++..+.-+++.+|-
T Consensus 405 HqGQke~KevhWH~QiP-G~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIP-GLLVSTAIDGFNVFK 436 (440)
T ss_pred ecchhHhhhheeccCCC-CeEEEecccceeEEE
Confidence 45667799999987532 355555556766664
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.41 E-value=1.3e-12 Score=133.58 Aligned_cols=150 Identities=12% Similarity=0.151 Sum_probs=111.8
Q ss_pred CEEEEEecCCeEEEEc-CCCe---eeEeEeecccceeEEEEecC-CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLK---FNFGFQAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~---~~~~~~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
+.|++|+--+.|++|. .+|. --+.|.+|+.+|-.++++|. .+.|+|||-||+ |+|||++...
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs---------IrIWDiRs~~---- 291 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS---------IRIWDIRSGP---- 291 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce---------EEEEEecCCC----
Confidence 6789999999999999 4432 12468889999999999994 478999999998 9999998542
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeec
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVD 190 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~d 190 (823)
..+ |+.+ +.|. +.|+.|.|+.+... ||+|..||++.+|+....+. +...-.+.-+..|||+|.|+|.
T Consensus 292 --~~~-~~~~-kAh~-----sDVNVISWnr~~~l---LasG~DdGt~~iwDLR~~~~-~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 292 --KKA-AVST-KAHN-----SDVNVISWNRREPL---LASGGDDGTLSIWDLRQFKS-GQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred --ccc-eeEe-eccC-----CceeeEEccCCcce---eeecCCCceEEEEEhhhccC-CCcceeEEeccCCeeEEEeccc
Confidence 122 5443 4332 34999999998888 99999999999998632211 1111123456899999999987
Q ss_pred CCeEEEEEEcCCeEEEEEecC
Q 037368 191 GQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 191 g~~~~l~~~t~~~V~~~d~~~ 211 (823)
..+.+++++.+++|.+||+.-
T Consensus 359 e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCceEEeccCCCcEEEEEeec
Confidence 643455555678899999853
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3e-11 Score=115.41 Aligned_cols=186 Identities=11% Similarity=0.114 Sum_probs=133.9
Q ss_pred EEEEEe-cCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 37 KVVIGC-DDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 37 ~l~~gs-~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
.|++|+ .|-.|.+-| ..|+..+.+.+|++-|..+..- +|-+++|+|.|.| |++||+.-
T Consensus 154 il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw-n~~m~~sgsqdkt---------irfwdlrv---------- 213 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW-NGAMFASGSQDKT---------IRFWDLRV---------- 213 (350)
T ss_pred EEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe-cCcEEEccCCCce---------EEEEeeec----------
Confidence 445443 556677777 6788888999999999998754 5789999999998 99999983
Q ss_pred CceEEEEEec--cCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce-eEEecCCCCcceEEEeecC
Q 037368 115 PDCIGILRVF--TSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF-KLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 115 ~~~~~~~~~~--~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~-~~~~~~~~~It~l~fs~dg 191 (823)
+.|++++... +.....+.|.+|+++|.|+. +|+|..|.+-.+|+. |+.+. +.++.+...|.++.|+|..
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~vdpsgrl---l~sg~~dssc~lydi-----rg~r~iq~f~phsadir~vrfsp~a 285 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL---LASGHADSSCMLYDI-----RGGRMIQRFHPHSADIRCVRFSPGA 285 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEECCCcce---eeeccCCCceEEEEe-----eCCceeeeeCCCccceeEEEeCCCc
Confidence 3477766421 10101134999999999999 999999999999986 34443 3356678889999999976
Q ss_pred CeEEEEEEcCCeEEEEEecCCC---CcceEEccCCCccceecccCCC-eEEEeeC-CeEEEEecC
Q 037368 192 QALQLFAVTPNSVILFSLQNQP---PKRQFLDNIGCSTNSVAMSDRL-ELIIGRP-EAVYFYEVD 251 (823)
Q Consensus 192 ~~~~l~~~t~~~V~~~d~~~~~---~~~~~l~~~~~~~~~~~~s~~~-~liv~~~-~~I~i~~~~ 251 (823)
. +.|.++.+.+|++-|+.+.- .+..+..+|...+-.+-|-|+. .|+.++. .++.+|...
T Consensus 286 ~-yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 286 H-YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred e-EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 3 44555567889999998642 2334444566555556787755 4776554 488888754
No 135
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=1e-11 Score=132.07 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=129.5
Q ss_pred CEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
+.++++|+||.+.+.++++++.++..+|.+.|.+-.|+|+|.-|+|+|+||. ||+|+-...
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~---------iKiWSrsGM---------- 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGV---------IKIWSRSGM---------- 136 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCce---------EEEEeccch----------
Confidence 4789999999999999999999999999999999999999999999999997 999987532
Q ss_pred ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEE
Q 037368 116 DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 116 ~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~ 195 (823)
+|+.-.+ ..-| |.|++|.|+.+. ++..- .|.+.+=-.. ...|.-.+..+.+-|.++.|++.. .+
T Consensus 137 --LRStl~Q-~~~~---v~c~~W~p~S~~---vl~c~-g~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s--~l 200 (737)
T KOG1524|consen 137 --LRSTVVQ-NEES---IRCARWAPNSNS---IVFCQ-GGHISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQS--NI 200 (737)
T ss_pred --HHHHHhh-cCce---eEEEEECCCCCc---eEEec-CCeEEEeecc----cccceeEEeccCcEEEEeecCccc--cc
Confidence 2211111 1223 999999999887 66542 4444442211 123444455678999999999876 45
Q ss_pred EEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCCeEEEEe
Q 037368 196 LFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYFYE 249 (823)
Q Consensus 196 l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i~~ 249 (823)
++.+.. -+.++||-.+. +...-..|..++.+++|.|+..|++++-++.++=.
T Consensus 201 I~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~ 253 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSS 253 (737)
T ss_pred eeecCCceeEEeecccCc--ccccCChhccceeeeeeccccceeeeeeeeeeecC
Confidence 555554 47999997654 23333356678899999999778887766666433
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=6.7e-13 Score=145.72 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=138.3
Q ss_pred CcCCC-CeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 22 EEVSG-NITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 22 ~~~~~-~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+.++. .|.|+.++. ..|+.|+.+|+|++|| ..++.++++.+|...+..+.|+|-+.+.|++|.|+. +
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd---------~ 136 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD---------L 136 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccc---------c
Confidence 34433 478888754 4679999999999999 778889999999999999999999999999999997 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
++||..+.. |..+.+. ++ ..+.+++|+|+|+. +|.|+.|.+|.+|++. .+.-...+..
T Consensus 137 ~iwD~Rk~G----------c~~~~~s----~~-~vv~~l~lsP~Gr~---v~~g~ed~tvki~d~~----agk~~~ef~~ 194 (825)
T KOG0267|consen 137 KIWDIRKKG----------CSHTYKS----HT-RVVDVLRLSPDGRW---VASGGEDNTVKIWDLT----AGKLSKEFKS 194 (825)
T ss_pred eehhhhccC----------ceeeecC----Cc-ceeEEEeecCCCce---eeccCCcceeeeeccc----cccccccccc
Confidence 999998532 6655542 22 33899999999999 9999999999999862 2222222334
Q ss_pred CCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee
Q 037368 178 NQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR 241 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~ 241 (823)
++++|.++.|.|.. ..+..++. ..|.+||+++-. ..-..+.....+.|..|+|+++.+.++
T Consensus 195 ~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~dletfe-~I~s~~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLE--VLLAPGSSDRTVRFWDLETFE-VISSGKPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccccccccccCchh--hhhccCCCCceeeeeccceeE-EeeccCCccCCceeeeecCCceeeecC
Confidence 57899999998875 45555554 459999997421 111111223457789999999866544
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=2.3e-11 Score=127.25 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=132.2
Q ss_pred CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
++.||+||.|.+|++|| .+|++..++..|++.|+++.|+| ...+|+|+|.|++ |++.|++...
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~---------V~l~D~R~~~------ 320 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT---------VALKDCRDPS------ 320 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce---------EEeeeccCcc------
Confidence 46899999999999999 88999999999999999999998 4588999999998 9999998421
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCC
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~ 192 (823)
..+. ..+. ++.|-.++|+|..-. .+.+|+.||+|+-++. |..+.....+..++++|.+|.++..-.
T Consensus 321 ~s~~---~wk~------~g~VEkv~w~~~se~--~f~~~tddG~v~~~D~---R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 321 NSGK---EWKF------DGEVEKVAWDPHSEN--SFFVSTDDGTVYYFDI---RNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred ccCc---eEEe------ccceEEEEecCCCce--eEEEecCCceEEeeec---CCCCCceeEEEeccCCcceEEecCCCC
Confidence 1111 1221 134999999986532 3889999999998875 333333344566789999999986532
Q ss_pred eEEEEEEcC-CeEEEEEecCCCCcceEEc--cCCCccceecccCC--CeEEEeeCC-eEEEEecCC
Q 037368 193 ALQLFAVTP-NSVILFSLQNQPPKRQFLD--NIGCSTNSVAMSDR--LELIIGRPE-AVYFYEVDG 252 (823)
Q Consensus 193 ~~~l~~~t~-~~V~~~d~~~~~~~~~~l~--~~~~~~~~~~~s~~--~~liv~~~~-~I~i~~~~g 252 (823)
.++..++. ..|.+|++.... +..+-. -.-....|.++.|+ +.+++|+.. .+++|++..
T Consensus 387 -~~l~t~s~d~~Vklw~~~~~~-~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 387 -GLLSTASTDKVVKLWKFDVDS-PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred -cceeeccccceEEEEeecCCC-CcccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 45555544 459999987543 222211 01112456666664 456666655 588999763
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=9.1e-12 Score=130.65 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=136.5
Q ss_pred CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
.+++|++.++.|.|+++. .+++.+.+|+ -.|.|..++|+++|+.|+.+|.+|. |-+||+..
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge---------V~v~nl~~-------- 375 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE---------VYVWNLRQ-------- 375 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce---------EEEEecCC--------
Confidence 456899999999999999 7788887887 4579999999999999999999997 99999984
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccc-cccccceeE-EecCCCCcceEEEeec
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIA-RERITRFKL-QVDNQCSVMGLGFRVD 190 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~-~~~~~k~~~-~~~~~~~It~l~fs~d 190 (823)
+.|++.+...+..+ -+++|.++++++ +|+|+..|-|.||+++-. .+..+|+.. +-+..-.|++|.|++|
T Consensus 376 --~~~~~rf~D~G~v~----gts~~~S~ng~y---lA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 376 --NSCLHRFVDDGSVH----GTSLCISLNGSY---LATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred --cceEEEEeecCccc----eeeeeecCCCce---EEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 35887766433222 588999999999 999999999999986521 112223221 2233567999999999
Q ss_pred CCeEEEEEEcC---CeEEEEEecCCCCcceEEc---cCC---CccceecccC-CCeEEEeeC-CeEEEEecC
Q 037368 191 GQALQLFAVTP---NSVILFSLQNQPPKRQFLD---NIG---CSTNSVAMSD-RLELIIGRP-EAVYFYEVD 251 (823)
Q Consensus 191 g~~~~l~~~t~---~~V~~~d~~~~~~~~~~l~---~~~---~~~~~~~~s~-~~~liv~~~-~~I~i~~~~ 251 (823)
+ .+|+.++. +.+++-.+..- +++. ..+ ..+.|++||| .|.+++|.. +.+.+|.+.
T Consensus 447 ~--qiLAiaS~~~knalrLVHvPS~----TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 A--QILAIASRVKKNALRLVHVPSC----TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred h--hhhhhhhhccccceEEEeccce----eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8 47777763 45887776532 2222 122 3468999999 667778875 478888754
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.35 E-value=1.2e-10 Score=115.84 Aligned_cols=195 Identities=13% Similarity=0.159 Sum_probs=135.9
Q ss_pred CCeEEEeeC---CCEEEEEecCCeEEEEc-CCCe------ee-E--e------EeecccceeEEEEec-CCCEEEEEecC
Q 037368 26 GNITCCSSG---RGKVVIGCDDGAVSLLD-RGLK------FN-F--G------FQAHSSSVLFLQQLK-QRNFLVTVGED 85 (823)
Q Consensus 26 ~~is~~~~~---~~~l~~gs~dG~i~~~d-~~~~------~~-~--~------~~~H~~~V~~i~~~~-~~~~l~s~s~D 85 (823)
..|++.... +.++++|+.||.|-+|| .+-. ++ + . =.+|...|..+.|-| |..++.|+|-|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 346666553 35889999999999999 3211 11 0 0 124778999999998 66788999999
Q ss_pred CCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcce-EEEEEeCCeEEEEEccc
Q 037368 86 EQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILL-IAIGLDNGCIYCIKGDI 164 (823)
Q Consensus 86 ~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~-ia~G~~dG~V~l~~~~~ 164 (823)
.+ +||||..+. ++...| .+| +.|.+-|++|-... -+ ||+|+.+-+|+|.+..
T Consensus 124 ht---------lKVWDtnTl-------------Q~a~~F--~me-~~VYshamSp~a~s-HcLiA~gtr~~~VrLCDi~- 176 (397)
T KOG4283|consen 124 HT---------LKVWDTNTL-------------QEAVDF--KME-GKVYSHAMSPMAMS-HCLIAAGTRDVQVRLCDIA- 176 (397)
T ss_pred ce---------EEEeecccc-------------eeeEEe--ecC-ceeehhhcChhhhc-ceEEEEecCCCcEEEEecc-
Confidence 98 999999843 233333 233 44777777775431 11 9999999999999863
Q ss_pred ccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEcc--------------CCCcccee
Q 037368 165 ARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDN--------------IGCSTNSV 229 (823)
Q Consensus 165 ~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~--------------~~~~~~~~ 229 (823)
.|....++..+.+.|.++.|+|... .+|+.++. +.|++||++.-..+..+++. |...++.+
T Consensus 177 ---SGs~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngl 252 (397)
T KOG4283|consen 177 ---SGSFSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGL 252 (397)
T ss_pred ---CCcceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeee
Confidence 3455556667788899999999763 56777764 56999999743223344432 34567778
Q ss_pred cccCCCeEE--EeeCCeEEEEecC
Q 037368 230 AMSDRLELI--IGRPEAVYFYEVD 251 (823)
Q Consensus 230 ~~s~~~~li--v~~~~~I~i~~~~ 251 (823)
+|+.+|..+ ++.++.+++|+.+
T Consensus 253 a~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 253 AWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred eecccchhhhhccCccceEEeecc
Confidence 898888643 4667899999975
No 140
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.6e-09 Score=103.87 Aligned_cols=273 Identities=13% Similarity=0.124 Sum_probs=163.7
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc-C------CCe---------eeEeEeecccceeEEEEecCCCEEEEEecCCCC
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD-R------GLK---------FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQV 88 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d-~------~~~---------~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~ 88 (823)
.|-++++++ +..++|+.+.++++.. + .+. ..+.-+.|.++|.|.+|+|+|++++|+|.|.+
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~- 112 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT- 112 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce-
Confidence 377777754 4669999999999875 2 111 12334568999999999999999999999998
Q ss_pred cccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcce-EEEEEeCCeEEEEEcccccc
Q 037368 89 SAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILL-IAIGLDNGCIYCIKGDIARE 167 (823)
Q Consensus 89 ~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~-ia~G~~dG~V~l~~~~~~~~ 167 (823)
||+--+..... ...| +.. .+..++ +.|..++|-.+...-.. +|+|+ .|.-.+|-.|.-
T Consensus 113 --------ik~l~fn~dt~--~~~g-~dl--e~nmhd-----gtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~-- 171 (350)
T KOG0641|consen 113 --------IKVLPFNADTC--NATG-HDL--EFNMHD-----GTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCG-- 171 (350)
T ss_pred --------EEEEecccccc--cccC-cce--eeeecC-----CceeeeEEecCCCcCceEEEecC-CCcceEEEeecC--
Confidence 99877653110 0011 111 233332 34899999665432112 55544 455555533321
Q ss_pred cccceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEcc--CC-----CccceecccCCCeEEE
Q 037368 168 RITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDN--IG-----CSTNSVAMSDRLELII 239 (823)
Q Consensus 168 ~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~--~~-----~~~~~~~~s~~~~liv 239 (823)
++.....+-.+.+-|.++ ++|+| ..++.++. .+|++||++-.. ...++++ |+ +.+..++..|.|++++
T Consensus 172 ~g~~~~a~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred CCCcceeecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 333334444557778877 56776 34444444 469999997543 4444431 22 4456778889999887
Q ss_pred ee--CCeEEEEecCCCCccccccCC---eEEE--EeeCcEEEEEEecCCCCccEEEEEeCCCCEE------EEeccccce
Q 037368 240 GR--PEAVYFYEVDGRGPCWAFEGE---KKLL--GWFRGYLLCVIADQRNSKNIFNVYDLKNRLI------AHSLVVKEV 306 (823)
Q Consensus 240 ~~--~~~I~i~~~~g~~~~~~~~g~---~~~i--~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i------~~~~~i~~v 306 (823)
++ +.+..+|+++|..+...|--| ..++ ++...|++.++. +..|++-|+++.+. +-.++-..+
T Consensus 248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-----d~~ikltdlqgdla~el~~~vv~ehkdk~ 322 (350)
T KOG0641|consen 248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-----DMKIKLTDLQGDLAHELPIMVVAEHKDKA 322 (350)
T ss_pred eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-----cceEEEeecccchhhcCceEEEEeccCce
Confidence 54 347889999987665444333 3333 334568888885 47999999987431 111111112
Q ss_pred eEE-EeecCcEEEEEcCCeEEEEee
Q 037368 307 SHM-LCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 307 ~~v-~~~~~~~~vvs~~~~v~~l~~ 330 (823)
..+ ..+.+--|+.++.++...||.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred EEEEecCccceeeeccCcceEEEec
Confidence 111 233333466666666666664
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=1.8e-12 Score=142.37 Aligned_cols=217 Identities=17% Similarity=0.195 Sum_probs=150.4
Q ss_pred EEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceE
Q 037368 39 VIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCI 118 (823)
Q Consensus 39 ~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~ 118 (823)
..+...-.+++|+ .+.|-+|+..|.++..-..+..+++||+|.. +-+|...+. .++
T Consensus 8 m~~~~~t~Lr~~~-----~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k---------~~L~~i~kp----------~~i 63 (825)
T KOG0267|consen 8 MKTKRATKLRVWD-----TREFVAHSAAVGCLKIRKSSRSLVTGGEDEK---------VNLWAIGKP----------NAI 63 (825)
T ss_pred ceeeeeecccccc-----chhhhhhhhhhceeeeeccceeeccCCCcee---------eccccccCC----------chh
Confidence 3344444566776 2356789999999998778899999999987 889998853 343
Q ss_pred EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEE
Q 037368 119 GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFA 198 (823)
Q Consensus 119 ~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~ 198 (823)
-.+..+ ..| |.|+.|+++-.. ||.|..+|+|++||.. ...-.+++..+..++++|.|+|-|. +..-+
T Consensus 64 ~S~~~h--esp---IeSl~f~~~E~L---laagsasgtiK~wDle----eAk~vrtLtgh~~~~~sv~f~P~~~-~~a~g 130 (825)
T KOG0267|consen 64 TSLTGH--ESP---IESLTFDTSERL---LAAGSASGTIKVWDLE----EAKIVRTLTGHLLNITSVDFHPYGE-FFASG 130 (825)
T ss_pred heeecc--CCc---ceeeecCcchhh---hcccccCCceeeeehh----hhhhhhhhhccccCcceeeeccceE-Eeccc
Confidence 344433 456 999999999888 9999999999999864 2223445666778999999999773 22234
Q ss_pred EcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC-CeEEEEecCCCCccccccCC---eEEEEeeCcEE
Q 037368 199 VTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP-EAVYFYEVDGRGPCWAFEGE---KKLLGWFRGYL 273 (823)
Q Consensus 199 ~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~-~~I~i~~~~g~~~~~~~~g~---~~~i~~~~~yl 273 (823)
+++....+||...++ +...+..|...++++.|+|+|++++ +++ ..+++||..-......|++| ...+.++..-+
T Consensus 131 Stdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred cccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhh
Confidence 556679999998665 6677777766788999999998776 444 48999997522222234433 22233222222
Q ss_pred EEEEecCCCCccEEEEEeCCCCE
Q 037368 274 LCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 274 v~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+..+.. .+.+|+.||+++-.
T Consensus 210 Lla~Gs---~d~tv~f~dletfe 229 (825)
T KOG0267|consen 210 LLAPGS---SDRTVRFWDLETFE 229 (825)
T ss_pred hhccCC---CCceeeeeccceeE
Confidence 222111 57899999998533
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.35 E-value=2.7e-11 Score=127.74 Aligned_cols=232 Identities=16% Similarity=0.155 Sum_probs=156.1
Q ss_pred cCCCCeEEEeeC-CCEEEEEe--cCCeEEEEcCCCe---e--eEeEeecc-cceeEEEEecCCCEEEEEecCCCCccccc
Q 037368 23 EVSGNITCCSSG-RGKVVIGC--DDGAVSLLDRGLK---F--NFGFQAHS-SSVLFLQQLKQRNFLVTVGEDEQVSAQQS 93 (823)
Q Consensus 23 ~~~~~is~~~~~-~~~l~~gs--~dG~i~~~d~~~~---~--~~~~~~H~-~~V~~i~~~~~~~~l~s~s~D~~~~~~~~ 93 (823)
..++.++.++-. .++|++++ .|..+++|.++|+ + ++...+.. --|.++.+ .-+++++|..++
T Consensus 32 t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~---S~y~~sgG~~~~------ 102 (673)
T KOG4378|consen 32 TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ---SLYEISGGQSGC------ 102 (673)
T ss_pred CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc---ceeeeccCcCce------
Confidence 445668777764 45677765 5667899986665 2 22222221 13444544 478999999987
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 94 AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
|||||+... .|.+.++.+ + +.|++|.+.-..-+ ||+|+..|.|++.... .+.+..
T Consensus 103 ---Vkiwdl~~k----------l~hr~lkdh--~---stvt~v~YN~~Dey---iAsvs~gGdiiih~~~----t~~~tt 157 (673)
T KOG4378|consen 103 ---VKIWDLRAK----------LIHRFLKDH--Q---STVTYVDYNNTDEY---IASVSDGGDIIIHGTK----TKQKTT 157 (673)
T ss_pred ---eeehhhHHH----------HHhhhccCC--c---ceeEEEEecCCcce---eEEeccCCcEEEEecc----cCcccc
Confidence 999999842 366666533 2 33999999887789 9999999999988642 122333
Q ss_pred EEecC-CCCcceEEEeecCCeEEEEEEcCCe-EEEEEecCCCCcceEEccCCCccceecccCCCeEE---EeeCCeEEEE
Q 037368 174 LQVDN-QCSVMGLGFRVDGQALQLFAVTPNS-VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI---IGRPEAVYFY 248 (823)
Q Consensus 174 ~~~~~-~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li---v~~~~~I~i~ 248 (823)
.+... ...|.-|.|++..+ ..|.++++++ |.+||+.+........+.|..+..-+||+|.+..+ ||-|..|++|
T Consensus 158 ~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~y 236 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIY 236 (673)
T ss_pred ceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEe
Confidence 33333 45566899998764 5677777665 99999988754444446788888889999977633 3557799999
Q ss_pred ecCCCC--ccccccCCeEEEEe--eCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 249 EVDGRG--PCWAFEGEKKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 249 ~~~g~~--~~~~~~g~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
|+..+. .+++.+.+-..+++ .|.||++++ ..|.|.-||+..
T Consensus 237 D~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~-----s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN-----SKGELIAYDMRS 281 (673)
T ss_pred ecccccccceeeecCCcceeeecCCceEEEeec-----CCceEEEEeccc
Confidence 987543 24555555444444 567887776 358899999865
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.34 E-value=2.9e-10 Score=120.48 Aligned_cols=235 Identities=15% Similarity=0.234 Sum_probs=156.1
Q ss_pred eEEEeeC-CCEEEEEecCCeEEEEcC-CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 28 ITCCSSG-RGKVVIGCDDGAVSLLDR-GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 28 is~~~~~-~~~l~~gs~dG~i~~~d~-~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
|.|+++. ++-+++|+++|+|.||++ ..+..+.-.+|.+.|-+++...+|. |+|+|.|.. |..||-.-.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRk---------i~~Wd~~y~ 318 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRK---------IILWDDNYR 318 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccce---------EEecccccc
Confidence 8888885 579999999999999995 4455566669999999999999886 556999998 999983211
Q ss_pred CC-C-------C----CCCCCCc-eEEEEEec---c---CCC------CCCceEEEEEecCCCCcceEEEEEeCCeEEEE
Q 037368 106 EP-E-------G----TSSTSPD-CIGILRVF---T---SQF------PEAKITSFLVLEEAPPILLIAIGLDNGCIYCI 160 (823)
Q Consensus 106 ~~-~-------~----~~~~~~~-~~~~~~~~---~---~~~------p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~ 160 (823)
.. + + ...+.+. .+.+.+.+ + ..+ .+.+.+.+|.+|+..+ +++.+.|+.|.||
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q---~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ---LLTCGQDKHVRLW 395 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh---eeeccCcceEEEc
Confidence 10 0 0 0011111 11111100 0 000 0134899999999999 9999999999999
Q ss_pred EcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeE-E
Q 037368 161 KGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLEL-I 238 (823)
Q Consensus 161 ~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~l-i 238 (823)
+.. |..--..-..|+.++.|.|.| .+++++. +.-.+.|.+++ ...++-.. +.+++|+.++|+|.+ +
T Consensus 396 ~~~-------k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~-~lv~~~~d-~~~ls~v~ysp~G~~lA 463 (626)
T KOG2106|consen 396 NDH-------KLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTETQ-DLVTIHTD-NEQLSVVRYSPDGAFLA 463 (626)
T ss_pred cCC-------ceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEecccc-eeEEEEec-CCceEEEEEcCCCCEEE
Confidence 731 211111226789999999988 4666654 55678888763 23333333 788999999999975 4
Q ss_pred EeeC-CeEEEEecCCCCcccc----ccCC-eEEEEe--eCcEEEEEEecCCCCccEEEEEeC
Q 037368 239 IGRP-EAVYFYEVDGRGPCWA----FEGE-KKLLGW--FRGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 239 v~~~-~~I~i~~~~g~~~~~~----~~g~-~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
+|+. +.|++|.++..+..+. ..|. ...+.| +++|++..+. |-.|.-|.+
T Consensus 464 vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~-----d~eiLyW~~ 520 (626)
T KOG2106|consen 464 VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG-----DYEILYWKP 520 (626)
T ss_pred EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC-----ceEEEEEcc
Confidence 5654 5899999876554432 2232 334444 5678888874 467888844
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.34 E-value=7e-11 Score=118.04 Aligned_cols=196 Identities=16% Similarity=0.096 Sum_probs=130.6
Q ss_pred CCCeEEEe-e-CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCC--EEEEEecCCCCcccccceeEEE
Q 037368 25 SGNITCCS-S-GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRN--FLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 25 ~~~is~~~-~-~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~--~l~s~s~D~~~~~~~~~~~vkv 99 (823)
+..|-|++ + .+..+++|+.||.+++|| .+++ ...+.+|.++|..+.|.+... +|+|+|.|.| ||+
T Consensus 72 ~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT---------lKf 141 (347)
T KOG0647|consen 72 DGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT---------LKF 141 (347)
T ss_pred CCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccc---------eee
Confidence 33453444 3 346889999999999999 5665 458999999999999998776 8999999999 999
Q ss_pred EeCCCCCCC------CCCC----CCCc--------eEEEEEecc-------CCCCC-CceEEEEEecCCCCcceEEEEEe
Q 037368 100 FDLDKMEPE------GTSS----TSPD--------CIGILRVFT-------SQFPE-AKITSFLVLEEAPPILLIAIGLD 153 (823)
Q Consensus 100 Wdl~~~~~~------~~~~----~~~~--------~~~~~~~~~-------~~~p~-~~v~~va~~~d~~~~~~ia~G~~ 153 (823)
||++...+- .+-+ -.|. -+.++.+.. ...|. -.+.|||..+|... .|+|+.
T Consensus 142 WD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~---~alGsi 218 (347)
T KOG0647|consen 142 WDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG---FALGSI 218 (347)
T ss_pred cccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc---eEeeee
Confidence 999854210 0000 0000 011111110 01121 13899999999988 999999
Q ss_pred CCeEEEEEccccccccccee-EE--ec----CC---CCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCC
Q 037368 154 NGCIYCIKGDIARERITRFK-LQ--VD----NQ---CSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIG 223 (823)
Q Consensus 154 dG~V~l~~~~~~~~~~~k~~-~~--~~----~~---~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~ 223 (823)
.|.|-+...+- ..++.. .+ +- .. -+|.+|+|.|.-. .++.+++++....||-+.+. ..+..+.++
T Consensus 219 EGrv~iq~id~---~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~-kLk~s~~~~ 293 (347)
T KOG0647|consen 219 EGRVAIQYIDD---PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART-KLKTSETHP 293 (347)
T ss_pred cceEEEEecCC---CCccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhh-hhhccCcCC
Confidence 99999876542 111111 11 11 11 2688999999642 56666678889999977654 234445678
Q ss_pred CccceecccCCCeEE
Q 037368 224 CSTNSVAMSDRLELI 238 (823)
Q Consensus 224 ~~~~~~~~s~~~~li 238 (823)
.++.|++|+.+|.+.
T Consensus 294 qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 294 QPITCCSFNRNGSIF 308 (347)
T ss_pred CccceeEecCCCCEE
Confidence 889999999988754
No 145
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.34 E-value=3.2e-10 Score=124.31 Aligned_cols=302 Identities=15% Similarity=0.218 Sum_probs=177.0
Q ss_pred CCCeEEEeeC-CCEEEEEecCCeEEEEc-CC----CeeeEeEeecccceeEEEEec-----------CCCEEEEEecCCC
Q 037368 25 SGNITCCSSG-RGKVVIGCDDGAVSLLD-RG----LKFNFGFQAHSSSVLFLQQLK-----------QRNFLVTVGEDEQ 87 (823)
Q Consensus 25 ~~~is~~~~~-~~~l~~gs~dG~i~~~d-~~----~~~~~~~~~H~~~V~~i~~~~-----------~~~~l~s~s~D~~ 87 (823)
++.|.|.+.. ..+|..--.|..+++|| ++ |++ .++--|+.-|+.+...| -...++|||.|+|
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 5557888774 46676667899999999 54 333 36667999999988766 1245999999999
Q ss_pred CcccccceeEEEEeCCCCCCCCC---------------CCCCCceEE--EEEeccCCC---CC--CceEEEEEecCCCCc
Q 037368 88 VSAQQSAVCLKVFDLDKMEPEGT---------------SSTSPDCIG--ILRVFTSQF---PE--AKITSFLVLEEAPPI 145 (823)
Q Consensus 88 ~~~~~~~~~vkvWdl~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~---p~--~~v~~va~~~d~~~~ 145 (823)
||+||++.....+. ..++.+.+. ...+|++.. -+ -.+.+++++|+|+.
T Consensus 404 ---------IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh- 473 (1080)
T KOG1408|consen 404 ---------IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH- 473 (1080)
T ss_pred ---------EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce-
Confidence 99999986321000 000000000 011111000 01 13999999999999
Q ss_pred ceEEEEEeCCeEEEEEccc--------ccc-------------------cccceeEE---------------ecCCCCcc
Q 037368 146 LLIAIGLDNGCIYCIKGDI--------ARE-------------------RITRFKLQ---------------VDNQCSVM 183 (823)
Q Consensus 146 ~~ia~G~~dG~V~l~~~~~--------~~~-------------------~~~k~~~~---------------~~~~~~It 183 (823)
+|+|-..|++++|+..- .++ ...|-+.+ -++...||
T Consensus 474 --LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 --LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred --ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999998420 000 01122221 22467899
Q ss_pred eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccC-----CCccceecccCCCeEE-Ee-eCCeEEEEecCCCCcc
Q 037368 184 GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNI-----GCSTNSVAMSDRLELI-IG-RPEAVYFYEVDGRGPC 256 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~-----~~~~~~~~~s~~~~li-v~-~~~~I~i~~~~g~~~~ 256 (823)
++.|...|-...+..+..++-..|+...+......+..+ ...++.+...|...++ ++ .|..|++|+++.....
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 999987763234555555554456554433222233222 1235566777766644 44 4569999998732222
Q ss_pred cccc------CC--eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEE-EE-eccccceeEE-Eeec-CcEEEEEcCCe
Q 037368 257 WAFE------GE--KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLI-AH-SLVVKEVSHM-LCEW-GNIILVMTDKS 324 (823)
Q Consensus 257 ~~~~------g~--~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i-~~-~~~i~~v~~v-~~~~-~~~~vvs~~~~ 324 (823)
..|. |. |..+.+.+.|+++.+. +.++.++|.-.+.. +. .++-..|..+ |..+ ..++-++.||-
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCS-----DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeec-----CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 3343 33 4567778899998874 58999999976543 22 2232224443 3333 34555666664
Q ss_pred EEEEeecChHHHHHHHHHhcc
Q 037368 325 VLCIGEKDMESKLDMLFKKNL 345 (823)
Q Consensus 325 v~~l~~~~~~~~i~~L~~~~~ 345 (823)
|+ +|..+.+-.|.+--+.++
T Consensus 707 IF-vW~lp~~mii~m~~r~~~ 726 (1080)
T KOG1408|consen 707 IF-VWKLPLTMIIRMVNRNGR 726 (1080)
T ss_pred EE-EEECchhHhHHHHHHhhH
Confidence 44 566777655555444333
No 146
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.34 E-value=4.2e-11 Score=117.31 Aligned_cols=255 Identities=11% Similarity=0.077 Sum_probs=158.2
Q ss_pred EeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEE
Q 037368 58 FGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFL 137 (823)
Q Consensus 58 ~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va 137 (823)
+.+++|.+.|.++++..+|..|+++|-|++ ++||+++.... +.... ...+. +.|--++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dkt---------v~v~n~e~~r~----------~~~~~--~~gh~-~svdql~ 71 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKT---------VSVWNLERDRF----------RKELV--YRGHT-DSVDQLC 71 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCc---------eEEEEecchhh----------hhhhc--ccCCC-cchhhhe
Confidence 568899999999999999999999999998 99999985321 10111 11111 2366677
Q ss_pred EecC-CCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcc
Q 037368 138 VLEE-APPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKR 216 (823)
Q Consensus 138 ~~~d-~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~ 216 (823)
++|. ... +|++++|.+|++|+. |..|.....+..+.=-.+.|+|+|+ ++++...++.|...|.+... ..
T Consensus 72 w~~~~~d~---~atas~dk~ir~wd~-----r~~k~~~~i~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~-~~ 141 (313)
T KOG1407|consen 72 WDPKHPDL---FATASGDKTIRIWDI-----RSGKCTARIETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYK-IV 141 (313)
T ss_pred eCCCCCcc---eEEecCCceEEEEEe-----ccCcEEEEeeccCcceEEEEcCCCC-EEEEecCcccEEEEEecccc-ee
Confidence 7763 356 888999999999986 3344444344444445678999995 45555556779899886532 11
Q ss_pred eEEccCCCccceeccc-CCCeEE-EeeCCeEEEEecCCCCccccccCCe---E--EEEeeCcEEEEEEecCCCCccEEEE
Q 037368 217 QFLDNIGCSTNSVAMS-DRLELI-IGRPEAVYFYEVDGRGPCWAFEGEK---K--LLGWFRGYLLCVIADQRNSKNIFNV 289 (823)
Q Consensus 217 ~~l~~~~~~~~~~~~s-~~~~li-v~~~~~I~i~~~~g~~~~~~~~g~~---~--~i~~~~~ylv~~s~d~~~~~~~I~I 289 (823)
... .....++-++|+ ++..|. +.+-++|.|..--.=.+...+..|+ . .+.+.|.|+++++. |..+.+
T Consensus 142 ~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA-----DAlvSL 215 (313)
T KOG1407|consen 142 NEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA-----DALVSL 215 (313)
T ss_pred ehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc-----cceeec
Confidence 111 233444545555 444444 4455788876432122334444442 2 34557899999985 479999
Q ss_pred EeCCCC--EEEEeccccceeEE-EeecCcEEEEEcCCeEEEEeecChHHH-HHHHHHhccHHHHH
Q 037368 290 YDLKNR--LIAHSLVVKEVSHM-LCEWGNIILVMTDKSVLCIGEKDMESK-LDMLFKKNLYTVAI 350 (823)
Q Consensus 290 ~D~~~~--~i~~~~~i~~v~~v-~~~~~~~~vvs~~~~v~~l~~~~~~~~-i~~L~~~~~f~~Al 350 (823)
||++.= ..+++..-..|+.+ |+.+|.++..++.+..+-+-+++.-++ |++=++--.|-.|+
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAW 280 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAW 280 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEe
Confidence 999752 12333322336665 777888877777776666665555443 34434444444443
No 147
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.32 E-value=5.8e-10 Score=119.45 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=138.7
Q ss_pred CEE-EEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 36 GKV-VIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 36 ~~l-~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
+.+ ++++.++.|++|| .+++.++.+..|.. +..+.++|+++.++ +++.|++ |++||+...
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~---------l~~~d~~~~------- 105 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL---------VTVIDIETR------- 105 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe---------EEEEECCCC-------
Confidence 355 5677899999999 66777777766543 56788999998775 4566776 999999742
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCe-EEEEEcccccccccceeEEecCCCCcceEEEeecC
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGC-IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~-V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg 191 (823)
.++..+.. ... +.+++|+|++.. ++++..++. +..|+.. .+....... ....+.++.|+++|
T Consensus 106 ---~~~~~~~~---~~~---~~~~~~~~dg~~---l~~~~~~~~~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg 168 (300)
T TIGR03866 106 ---KVLAEIPV---GVE---PEGMAVSPDGKI---VVNTSETTNMAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADG 168 (300)
T ss_pred ---eEEeEeeC---CCC---cceEEECCCCCE---EEEEecCCCeEEEEeCC----CCeEEEEEE-cCCCccEEEECCCC
Confidence 23444431 122 688999999999 999887765 4455642 111111111 23456789999998
Q ss_pred CeEEEEEEc--CCeEEEEEecCCCCcceEEccC--C-----CccceecccCCCeEE-Ee--eCCeEEEEecCCCCccc-c
Q 037368 192 QALQLFAVT--PNSVILFSLQNQPPKRQFLDNI--G-----CSTNSVAMSDRLELI-IG--RPEAVYFYEVDGRGPCW-A 258 (823)
Q Consensus 192 ~~~~l~~~t--~~~V~~~d~~~~~~~~~~l~~~--~-----~~~~~~~~s~~~~li-v~--~~~~I~i~~~~g~~~~~-~ 258 (823)
+ .+++++ ++.|.+||+.+.. ....++.+ + ..+..++++|+++.+ ++ .++.+.+|+.+. +... .
T Consensus 169 ~--~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-~~~~~~ 244 (300)
T TIGR03866 169 K--ELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-YEVLDY 244 (300)
T ss_pred C--EEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-CcEEEE
Confidence 4 454443 5679999997542 22222211 1 122346788988753 32 346899999863 2221 1
Q ss_pred -ccC-CeEEEEe--eCcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 259 -FEG-EKKLLGW--FRGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 259 -~~g-~~~~i~~--~~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
..+ ....++| .+.+|++... .+++|.|||+.+...
T Consensus 245 ~~~~~~~~~~~~~~~g~~l~~~~~----~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 245 LLVGQRVWQLAFTPDEKYLLTTNG----VSNDVSVIDVAALKV 283 (300)
T ss_pred EEeCCCcceEEECCCCCEEEEEcC----CCCeEEEEECCCCcE
Confidence 112 2334444 5667766543 358999999988654
No 148
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=3.4e-11 Score=120.38 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=135.2
Q ss_pred eCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 33 SGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 33 ~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
++...+++|+.|.+..+|| .+|+++..+.||....++++.+|...+++|.|.|.| .++||+..
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT---------FRLWDFRe------- 345 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT---------FRLWDFRE------- 345 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce---------eEeccchh-------
Confidence 4667899999999999999 889999999999999999999999999999999998 99999973
Q ss_pred CCCCceEEEEEec-cCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce--eEEecCCCCcceEEEe
Q 037368 112 STSPDCIGILRVF-TSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF--KLQVDNQCSVMGLGFR 188 (823)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~--~~~~~~~~~It~l~fs 188 (823)
.+..+.+| +++ ..|+++.|..|. . +++|+.|.+|++|+.. .++. -++. ...|+..++.+
T Consensus 346 -----aI~sV~VFQGHt---dtVTS~vF~~dd-~---vVSgSDDrTvKvWdLr-----NMRsplATIR-tdS~~NRvavs 407 (481)
T KOG0300|consen 346 -----AIQSVAVFQGHT---DTVTSVVFNTDD-R---VVSGSDDRTVKVWDLR-----NMRSPLATIR-TDSPANRVAVS 407 (481)
T ss_pred -----hcceeeeecccc---cceeEEEEecCC-c---eeecCCCceEEEeeec-----cccCcceeee-cCCccceeEee
Confidence 23344444 222 339999999875 5 8999999999999862 2222 2222 36789999988
Q ss_pred ecCCeEEEEEEcCC-eEEEEEecCCCC---cceEEccCCCccceecccCCC---eEEE-eeCCeEEEEecC
Q 037368 189 VDGQALQLFAVTPN-SVILFSLQNQPP---KRQFLDNIGCSTNSVAMSDRL---ELII-GRPEAVYFYEVD 251 (823)
Q Consensus 189 ~dg~~~~l~~~t~~-~V~~~d~~~~~~---~~~~l~~~~~~~~~~~~s~~~---~liv-~~~~~I~i~~~~ 251 (823)
..+ .+++.--++ +|++||+.+... |...-.+|.--+.|++|.++. .+.+ |-|..+.-|++.
T Consensus 408 ~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 408 KGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred cCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 765 466666666 599999987531 111122455567889998532 3444 445577778765
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.30 E-value=1.6e-10 Score=121.31 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=153.6
Q ss_pred CCCeEEEeeCC----CEEEEEecCCeEEEEcCC--C---eeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccc
Q 037368 25 SGNITCCSSGR----GKVVIGCDDGAVSLLDRG--L---KFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSA 94 (823)
Q Consensus 25 ~~~is~~~~~~----~~l~~gs~dG~i~~~d~~--~---~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~ 94 (823)
...|+|+++++ +.+++|+..|+|-+||-. . .-+.-|..|+++|++|.|+|.. ..+.+.|.||+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt------- 258 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT------- 258 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce-------
Confidence 45799999975 467999999999999931 1 2345688999999999999954 67999999999
Q ss_pred eeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE
Q 037368 95 VCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL 174 (823)
Q Consensus 95 ~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~ 174 (823)
|+.-|+++.. ...+-+.. . . .....++.|+.+... +.+|..=|...+|+... .++-.-.
T Consensus 259 --iR~~D~~~~i--------~e~v~s~~--~-d--~~~fs~~d~~~e~~~---vl~~~~~G~f~~iD~R~---~~s~~~~ 317 (498)
T KOG4328|consen 259 --IRLQDFEGNI--------SEEVLSLD--T-D--NIWFSSLDFSAESRS---VLFGDNVGNFNVIDLRT---DGSEYEN 317 (498)
T ss_pred --eeeeeecchh--------hHHHhhcC--c-c--ceeeeeccccCCCcc---EEEeecccceEEEEeec---CCccchh
Confidence 9999998531 11111111 0 0 022677788777666 77776667777887421 1110111
Q ss_pred EecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecC---CCCcceEEccCCCccceecccC-CCeEEE-eeCCeEEEE
Q 037368 175 QVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQN---QPPKRQFLDNIGCSTNSVAMSD-RLELII-GRPEAVYFY 248 (823)
Q Consensus 175 ~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~---~~~~~~~l~~~~~~~~~~~~s~-~~~liv-~~~~~I~i~ 248 (823)
+.-++-.|++|+++|... ..+++++ +++.++||++. +..|....-+|.-.|++.+||| +|.+++ +.|+.|++|
T Consensus 318 ~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 318 LRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred hhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 122355899999999764 4455554 56799999864 2222111125777899999998 556665 456799999
Q ss_pred ecC--CCC--cccc-----ccCC---eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEe
Q 037368 249 EVD--GRG--PCWA-----FEGE---KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS 300 (823)
Q Consensus 249 ~~~--g~~--~~~~-----~~g~---~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~ 300 (823)
+.. +.. +... ..|. +....|..++.+++... --..|-|+|..++..+.+
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccEEEEec---cCcceeEEcCCCCEEeee
Confidence 974 111 0000 1111 22345555554444322 123599999998875544
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=8.1e-11 Score=127.00 Aligned_cols=201 Identities=13% Similarity=0.188 Sum_probs=135.7
Q ss_pred EeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEE
Q 037368 58 FGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFL 137 (823)
Q Consensus 58 ~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va 137 (823)
..|+||++.|.+|+++|.|.+|||||+||+ ||||.+.+ ..|++++..- +.|.||+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGt---------vriWEi~T----------gRcvr~~~~d------~~I~~va 448 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGT---------VRIWEIAT----------GRCVRTVQFD------SEIRSVA 448 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCc---------EEEEEeec----------ceEEEEEeec------ceeEEEE
Confidence 368999999999999999999999999998 99999984 3599887632 3499999
Q ss_pred EecCCCCcce-EEEEEeCCeEEEEEccc------------cccc----c-----------------cceeEEecCCCCcc
Q 037368 138 VLEEAPPILL-IAIGLDNGCIYCIKGDI------------ARER----I-----------------TRFKLQVDNQCSVM 183 (823)
Q Consensus 138 ~~~d~~~~~~-ia~G~~dG~V~l~~~~~------------~~~~----~-----------------~k~~~~~~~~~~It 183 (823)
|+|.++. + +|++. ++++.+.+.-+ .... . .-.++...+..+|+
T Consensus 449 w~P~~~~--~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~ 525 (733)
T KOG0650|consen 449 WNPLSDL--CVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR 525 (733)
T ss_pred ecCCCCc--eeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence 9998753 2 55554 34455544211 0000 0 00122334467899
Q ss_pred eEEEeecCCeEEEEEEcC----CeEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEeeCCeEEEEecCCCCccc-
Q 037368 184 GLGFRVDGQALQLFAVTP----NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGRPEAVYFYEVDGRGPCW- 257 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t~----~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~~~~I~i~~~~g~~~~~- 257 (823)
.|.|+..| ..++++.. .+|.++++..+.. ..-|...+..+.++.|.|.. +|+|+....|++|+...+....
T Consensus 526 ~vtWHrkG--DYlatV~~~~~~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 526 QVTWHRKG--DYLATVMPDSGNKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKK 602 (733)
T ss_pred eeeeecCC--ceEEEeccCCCcceEEEEecccccc-cCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHH
Confidence 99999998 45555543 3599999975431 12233345567788998854 6788888999999976321111
Q ss_pred cccCCe----EEEEeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 258 AFEGEK----KLLGWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 258 ~~~g~~----~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
..+|.+ ..+.+.|+.|++++. ++.+..+|++-
T Consensus 603 L~tg~kwiS~msihp~GDnli~gs~-----d~k~~WfDldl 638 (733)
T KOG0650|consen 603 LLTGSKWISSMSIHPNGDNLILGSY-----DKKMCWFDLDL 638 (733)
T ss_pred HhcCCeeeeeeeecCCCCeEEEecC-----CCeeEEEEccc
Confidence 234442 245566789999885 47888888864
No 151
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.9e-08 Score=111.16 Aligned_cols=437 Identities=19% Similarity=0.236 Sum_probs=236.8
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCe-EEEEEe---cCCCCcceEE-ccCCCccceecccCCCeE--EEeeCCeEEEEecC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNS-VILFSL---QNQPPKRQFL-DNIGCSTNSVAMSDRLEL--IIGRPEAVYFYEVD 251 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~---~~~~~~~~~l-~~~~~~~~~~~~s~~~~l--iv~~~~~I~i~~~~ 251 (823)
+.|+++|+.+.+- ..++++-.+| |.++.= +.++. .... ...+.+++.+++..+++. .++....|.+|.+.
T Consensus 125 ~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 125 PSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred CCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 5688899998875 4566665554 777642 22332 2222 234567777787766653 46677889999999
Q ss_pred CCCcccc-ccCC--e-EEEE-eeCcE-EEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEE-EeecCcEEEEEcCCe
Q 037368 252 GRGPCWA-FEGE--K-KLLG-WFRGY-LLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHM-LCEWGNIILVMTDKS 324 (823)
Q Consensus 252 g~~~~~~-~~g~--~-~~i~-~~~~y-lv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v-~~~~~~~~vvs~~~~ 324 (823)
|++|... ++.+ . .+.+ ..+.+ ++++. +.-|..||..++-.++.-....-..+ +...|.+++++.+..
T Consensus 202 gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~------~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~~~~ 275 (933)
T KOG2114|consen 202 GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG------SEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTTDKG 275 (933)
T ss_pred CCCcceeeeccCCccceeeecCCCCccEEEec------CceEEEEcCCCcceeeeecCCCeEEEEEEecCEEEEEEccCC
Confidence 8885432 3322 1 1111 12334 55553 35799999988777665543332222 222345555554332
Q ss_pred EEEEeecChHHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhh
Q 037368 325 VLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFL 404 (823)
Q Consensus 325 v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl 404 (823)
+- ... +.......|...|+- ++. .+-++-|
T Consensus 276 ~~------~~s----------------------~s~ss~~~i~~~~d~----~n~-------------~v~ys~v----- 305 (933)
T KOG2114|consen 276 TE------NTS----------------------LSNSSSNRIFKAYDL----RNR-------------YVLYSSV----- 305 (933)
T ss_pred CC------Ccc----------------------cCccchhheeehhhh----cCc-------------ccchHHh-----
Confidence 10 000 011111122221110 000 0001111
Q ss_pred chhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHH
Q 037368 405 DAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAK 484 (823)
Q Consensus 405 ~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~ 484 (823)
++.|..-|-+. + |+++++ +. | ..+.+++ .-|.++-+.++-+-..|+.|+.||+
T Consensus 306 ----l~~l~d~l~~w---~-----~~~~vl---ts--d-g~~~~L~---------ek~le~kL~iL~kK~ly~~Ai~LAk 358 (933)
T KOG2114|consen 306 ----LEDLSDNLIEW---S-----FDCLVL---TS--D-GVVHELI---------EKDLETKLDILFKKNLYKVAINLAK 358 (933)
T ss_pred ----HHHHHHHHHhc---C-----CcEEEE---ec--C-Cceeeee---------eccHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111110 0 122111 00 0 1122221 3578888889988888999999998
Q ss_pred HhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHhhcCCCCcccCCCCCcccC
Q 037368 485 KAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEH-KPMETIDILLRLCTEDGESTKRGASSSTYMS 563 (823)
Q Consensus 485 ~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~-~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 563 (823)
..+.....+ .++..+||.-|..+ +-+++++--|+-+
T Consensus 359 ~~~~d~d~~-------------------------~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI------------------ 395 (933)
T KOG2114|consen 359 SQHLDEDTL-------------------------AEIHRKYGDYLYGKGDFDEATDQYIETI------------------ 395 (933)
T ss_pred hcCCCHHHH-------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHc------------------
Confidence 755444333 23444444444433 2233333333311
Q ss_pred CCCCHHHHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcc
Q 037368 564 MLPSPVDFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAE 641 (823)
Q Consensus 564 ~~~~~~~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (823)
..+.|..++.-|.+ ..+.++.|||.+.+..-.+ +.--+.|+..|... ++
T Consensus 396 ~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~---~dhttlLLncYiKl---kd----------------------- 446 (933)
T KOG2114|consen 396 GFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLAN---SDHTTLLLNCYIKL---KD----------------------- 446 (933)
T ss_pred ccCChHHHHHHhcCHHHHHHHHHHHHHHHHccccc---chhHHHHHHHHHHh---cc-----------------------
Confidence 13456667777765 2457889999998764322 12224566777764 21
Q ss_pred cCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHh-
Q 037368 642 YNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQ- 720 (823)
Q Consensus 642 ~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~- 720 (823)
-+||.+|++.. +.+.-.+|.+.|+.+|...+|.++.-+|-.|-++|+.+|...++
T Consensus 447 ---------------------~~kL~efI~~~---~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~ 502 (933)
T KOG2114|consen 447 ---------------------VEKLTEFISKC---DKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLED 502 (933)
T ss_pred ---------------------hHHHHHHHhcC---CCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHH
Confidence 37999999872 12244899999999999999999999999999999999999998
Q ss_pred cCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccC-CCCCHHHHHHHHHHHHhCCCCC----------hHHHHHHhcCC
Q 037368 721 AHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGEL-GEDCSKEVKEVLTYIERDDILP----------PIVVLQTLSRN 789 (823)
Q Consensus 721 ~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~-~~~~~~~i~~~L~~i~~~~~l~----------p~~vl~~l~~~ 789 (823)
.+++.+|+.|..... -+++-..+.+|=-.. ..++.+.+..+++.+...+-.+ +..-+.++.
T Consensus 503 ~~ny~eAl~yi~slp------~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~-- 574 (933)
T KOG2114|consen 503 LHNYEEALRYISSLP------ISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFS-- 574 (933)
T ss_pred hcCHHHHHHHHhcCC------HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeec--
Confidence 589999999888753 224444444432211 1223344444555554433221 222222332
Q ss_pred CCcchHHHHHHHHHHHHH
Q 037368 790 PCLTLSVIKDYIARKLEQ 807 (823)
Q Consensus 790 ~~~~~~~vk~~l~~~l~~ 807 (823)
-+...++.||-.+.+.
T Consensus 575 --~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 575 --QNYQILLNFLESMSEI 590 (933)
T ss_pred --cCHHHHHHHHHHHHhc
Confidence 2456677777765543
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.29 E-value=4.3e-11 Score=120.73 Aligned_cols=225 Identities=13% Similarity=0.184 Sum_probs=145.3
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
-++|+|+.-|.|++.| .+++..+.+.||.++|+.|.+.|.. ++++|||.|.+ ||+|++...
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s---------vRlwnI~~~-------- 168 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS---------VRLWNIQTD-------- 168 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce---------EEEEeccCC--------
Confidence 4789999999999999 6788889999999999999999965 78999999998 999999842
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccc--ccc-----------ccc----ceeEEe
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDI--ARE-----------RIT----RFKLQV 176 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~--~~~-----------~~~----k~~~~~ 176 (823)
.|+..+-... .+. .+|.+|.|+++|.. ||+++.|.++++|+.+. .++ +.. .+...+
T Consensus 169 --~Cv~VfGG~e-gHr-deVLSvD~~~~gd~---i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 169 --VCVAVFGGVE-GHR-DEVLSVDFSLDGDR---IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred --eEEEEecccc-ccc-CcEEEEEEcCCCCe---eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 3765553211 111 45999999999999 99999999999998651 000 000 000111
Q ss_pred -------cCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC-CCC---------cceEE---ccCCCcccee--cccCC
Q 037368 177 -------DNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN-QPP---------KRQFL---DNIGCSTNSV--AMSDR 234 (823)
Q Consensus 177 -------~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~-~~~---------~~~~l---~~~~~~~~~~--~~s~~ 234 (823)
-+...|.++.|-.+ .+|.-++++.|..|.... ... ..+++ +-..+.+..+ +|.|-
T Consensus 242 p~fst~diHrnyVDCvrw~gd---~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFGD---FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred ccccccccccchHHHHHHHhh---heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 02345666665543 455555677899997621 101 11112 1122333333 34454
Q ss_pred CeE-EEeeC-CeEEEEecCCCCcc--cc----ccCC---eEEEEeeCcEEEEEEecCCCCccEEEEEeC
Q 037368 235 LEL-IIGRP-EAVYFYEVDGRGPC--WA----FEGE---KKLLGWFRGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 235 ~~l-iv~~~-~~I~i~~~~g~~~~--~~----~~g~---~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
++. ++|.. +.|++|+.+...+. -+ ..+. ...++-++..|++++. +++|.-||.
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd-----d~~Vwrwdr 382 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD-----DGTVWRWDR 382 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC-----CCcEEEEEe
Confidence 554 44543 68999998754331 11 1221 1234456778888874 578988885
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.29 E-value=8.1e-11 Score=124.21 Aligned_cols=200 Identities=14% Similarity=0.210 Sum_probs=139.7
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
+.-.|++.. .-++++|+..|.|+||| +..-+.+.++.|+..|+++...-...++|+++..|. |.|..+
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd---------iiih~~ 150 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD---------IIIHGT 150 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCc---------EEEEec
Confidence 344555443 35789999999999999 533456678999999999999888899999999997 999998
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
.+... .+ ++.... ++.|.-+.++|..+. -+.+++.+|.|.|||.. .+.++......+..|-
T Consensus 151 ~t~~~-----tt-----~f~~~s----gqsvRll~ys~skr~--lL~~asd~G~VtlwDv~---g~sp~~~~~~~HsAP~ 211 (673)
T KOG4378|consen 151 KTKQK-----TT-----TFTIDS----GQSVRLLRYSPSKRF--LLSIASDKGAVTLWDVQ---GMSPIFHASEAHSAPC 211 (673)
T ss_pred ccCcc-----cc-----ceecCC----CCeEEEeecccccce--eeEeeccCCeEEEEecc---CCCcccchhhhccCCc
Confidence 75321 11 222110 133778888886432 27778899999999863 1222222223468899
Q ss_pred ceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC--CeEEEEecCCCCc
Q 037368 183 MGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEVDGRGP 255 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~~~ 255 (823)
.+|+|+|.+...++.++.+.+|.+||+..+. ....+. ...++..++|+|+|.+++++. +.|+.||+++...
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccc-ccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 9999999874234445567889999997654 223332 335677889999999776543 5899999987643
No 154
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.29 E-value=1.4e-10 Score=126.22 Aligned_cols=245 Identities=15% Similarity=0.131 Sum_probs=142.8
Q ss_pred eeCCCEEEEEecCCeEEEEc-CCCeeeEe--EeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 32 SSGRGKVVIGCDDGAVSLLD-RGLKFNFG--FQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 32 ~~~~~~l~~gs~dG~i~~~d-~~~~~~~~--~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
+.+...|++++.|.+++.|| .+++++.. +.||+++|-+++|.|.. ..++|||.||. |.|||+.-...
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~---------illWD~R~n~~ 179 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE---------ILLWDCRCNGV 179 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc---------EEEEEEeccch
Confidence 34556889999999999999 66666655 99999999999999854 67899999998 99999964210
Q ss_pred ----------CCCCCCCCceEE--EEEeccCCCCC----CceEEEEEecCCCCcceEEEEEe-CCeEEEEEccc--c-cc
Q 037368 108 ----------EGTSSTSPDCIG--ILRVFTSQFPE----AKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDI--A-RE 167 (823)
Q Consensus 108 ----------~~~~~~~~~~~~--~~~~~~~~~p~----~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~--~-~~ 167 (823)
.+.-++.|...+ .-++.....+. +.|+.+.|-.+ .. ||++++ ||.|++||..- . ..
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~t---laSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-ST---LASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ce---eeeccCCCcceEEEeecccccccc
Confidence 000011011000 00111111111 23666776554 45 666655 99999998520 0 00
Q ss_pred cccceeE-EecC---CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC-CcceEEccCCC-cc-ceecccCCCeEEEe
Q 037368 168 RITRFKL-QVDN---QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP-PKRQFLDNIGC-ST-NSVAMSDRLELIIG 240 (823)
Q Consensus 168 ~~~k~~~-~~~~---~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~-~~~~~l~~~~~-~~-~~~~~s~~~~liv~ 240 (823)
.++.... +..+ .-.+++|.....|. +.++.++|+.|+.|++.+-. .+...+.++-. .+ .....+|+++++++
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 0010000 0111 22356666555564 45666678889999997643 24343332211 11 12356789997764
Q ss_pred --eCCeEEEEecCCCCc-cccccCC---eEEEEeeC---cEEEEEEecCCCCccEEEEEeCCCC
Q 037368 241 --RPEAVYFYEVDGRGP-CWAFEGE---KKLLGWFR---GYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 241 --~~~~I~i~~~~g~~~-~~~~~g~---~~~i~~~~---~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
++...++|.+..-.. ...+-|| ...+.|.. .-+++++ +|.+++||++.+.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS-----dD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS-----DDFRVKIWRLSNG 393 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeec-----cCcceEEEeccCc
Confidence 456899999874322 2334455 33445532 2344444 5689999999654
No 155
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=4.5e-10 Score=123.32 Aligned_cols=232 Identities=14% Similarity=0.159 Sum_probs=155.4
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP 144 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~ 144 (823)
..|++|+++.+.+.||.+-.||. |-||++.. ++.+...+.. .++..|-+++|++.++.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~---------IEiwN~~~---------~w~~~~vi~g----~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGN---------IEIWNLSN---------NWFLEPVIHG----PEDRSIESLAWAEGGRL 83 (691)
T ss_pred cceEEEEEeccCCceeeeccCCc---------EEEEccCC---------CceeeEEEec----CCCCceeeEEEccCCeE
Confidence 68999999999999999999997 99999984 3445555542 23345999999988776
Q ss_pred cceEEEEEeCCeEEEEEcccccccccceeEEecC-CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC---CcceEEc
Q 037368 145 ILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP---PKRQFLD 220 (823)
Q Consensus 145 ~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~---~~~~~l~ 220 (823)
+-+|. +|+|.-||.- ..++...++. .++|++++.+|.+ ..+.++++++| ++++.... ...+.|.
T Consensus 84 ---FS~g~-sg~i~EwDl~-----~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGv-l~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 84 ---FSSGL-SGSITEWDLH-----TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGV-LYDFSIGPDKITYKRSLM 151 (691)
T ss_pred ---EeecC-CceEEEEecc-----cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCce-EEEEecCCceEEEEeecc
Confidence 66665 9999999863 2344444443 6899999999987 57888888873 44443321 2344455
Q ss_pred cCCCccceecccCCCe-EEEeeCCe-EEEEecCCCCccc----cccCC---eEEEEe----eC-cEEEEEEecCCCCccE
Q 037368 221 NIGCSTNSVAMSDRLE-LIIGRPEA-VYFYEVDGRGPCW----AFEGE---KKLLGW----FR-GYLLCVIADQRNSKNI 286 (823)
Q Consensus 221 ~~~~~~~~~~~s~~~~-liv~~~~~-I~i~~~~g~~~~~----~~~g~---~~~i~~----~~-~ylv~~s~d~~~~~~~ 286 (823)
...+.+-|++|+|++. ++.|+.|+ |++||+....... .+++- ...+.| .+ +.++++ | ..|+
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg--D---S~G~ 226 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG--D---SAGT 226 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe--c---CCce
Confidence 5667888999999998 66777666 9999987322111 12221 123444 22 333333 3 4699
Q ss_pred EEEEeCCCCEEEEeccc--cceeEEEe-ec-CcEEEEEcCCeEEEEeecChHH
Q 037368 287 FNVYDLKNRLIAHSLVV--KEVSHMLC-EW-GNIILVMTDKSVLCIGEKDMES 335 (823)
Q Consensus 287 I~I~D~~~~~i~~~~~i--~~v~~v~~-~~-~~~~vvs~~~~v~~l~~~~~~~ 335 (823)
|+.||........+-.. .+|..+-. .. +.+++.+.+++++++....-..
T Consensus 227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 99999988776543332 23544432 23 3466667789999997655433
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.26 E-value=2.3e-11 Score=128.40 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=128.7
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
+..++|-.||.|.||| ++-.+++.|+||+..+.||.++++|..|=|+|-|.+ ||.||+....
T Consensus 522 kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt---------vRcWDlregr-------- 584 (705)
T KOG0639|consen 522 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT---------VRCWDLREGR-------- 584 (705)
T ss_pred ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc---------eeehhhhhhh--------
Confidence 3446778999999999 888899999999999999999999999999999998 9999998532
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeE
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQAL 194 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~ 194 (823)
. . .-+ +|. +.|.++..+|++.. +|+|+.++.|-+.... ++-.-.++.++.-|.+|.|++.|+ -
T Consensus 585 q-l----qqh--dF~-SQIfSLg~cP~~dW---lavGMens~vevlh~s-----kp~kyqlhlheScVLSlKFa~cGk-w 647 (705)
T KOG0639|consen 585 Q-L----QQH--DFS-SQIFSLGYCPTGDW---LAVGMENSNVEVLHTS-----KPEKYQLHLHESCVLSLKFAYCGK-W 647 (705)
T ss_pred h-h----hhh--hhh-hhheecccCCCccc---eeeecccCcEEEEecC-----CccceeecccccEEEEEEecccCc-e
Confidence 1 1 111 222 33999999999999 9999999999987541 221223445677799999999995 2
Q ss_pred EEEEEcCCeEEEEEecCCCCcceEEc-cCCCccceecccCCCeEEE-eeCC-eEEEEec
Q 037368 195 QLFAVTPNSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLELII-GRPE-AVYFYEV 250 (823)
Q Consensus 195 ~l~~~t~~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~liv-~~~~-~I~i~~~ 250 (823)
++.++-++-+-.|.+.-. ..+|. ...+.|.||.+|.|++++| |+++ ...+|.+
T Consensus 648 fvStGkDnlLnawrtPyG---asiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYG---ASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccc---cceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 222223344778876532 23332 2346678888888888766 4444 4555543
No 157
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.8e-10 Score=126.91 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=135.5
Q ss_pred CCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe
Q 037368 44 DGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV 123 (823)
Q Consensus 44 dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~ 123 (823)
++.|.+||.+|...+.+..|...|....|+|+|+.|+.++.++. .+. |.+||+... .+.++..+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~--~~~----i~i~dl~tg--------~~~~l~~~-- 246 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENK--KSQ----LVVHDLRSG--------ARKVVASF-- 246 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCC--CcE----EEEEeCCCC--------ceEEEecC--
Confidence 47899999666555677788889999999999999999886542 122 999999742 22222211
Q ss_pred ccCCCCCCceEEEEEecCCCCcceEEEEE-eCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-
Q 037368 124 FTSQFPEAKITSFLVLEEAPPILLIAIGL-DNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP- 201 (823)
Q Consensus 124 ~~~~~p~~~v~~va~~~d~~~~~~ia~G~-~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~- 201 (823)
+ +...+++|+|||+. +|+++ .+|.+.||..++ .+...+.+..+...+++..|+|||+ .+++++..
T Consensus 247 -----~-g~~~~~~wSPDG~~---La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~-~i~f~s~~~ 313 (429)
T PRK01742 247 -----R-GHNGAPAFSPDGSR---LAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQ-SILFTSDRS 313 (429)
T ss_pred -----C-CccCceeECCCCCE---EEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCC-EEEEEECCC
Confidence 1 11557899999998 88875 588877775443 1223334444566788999999995 45555543
Q ss_pred CeEEEEEecCCCCcceEEccCCCccceecccCCCeEE-EeeCCeEEEEecCCCCcc-c--cccCCeEEEEeeCcEEEEEE
Q 037368 202 NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IGRPEAVYFYEVDGRGPC-W--AFEGEKKLLGWFRGYLLCVI 277 (823)
Q Consensus 202 ~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~~~~I~i~~~~g~~~~-~--~~~g~~~~i~~~~~ylv~~s 277 (823)
+...+|+++..+.....+. +.. .+..|+|+|+.+ ++..+.+..|+..+.... + .+....-.+++++.+++..+
T Consensus 314 g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVG-GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSS 390 (429)
T ss_pred CCceEEEEECCCCCeEEec-CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEE
Confidence 4567776643322233332 222 456799999865 444567778887632211 1 11112224566788888877
Q ss_pred ecCCCCccEEEEEeCCCCE
Q 037368 278 ADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 278 ~d~~~~~~~I~I~D~~~~~ 296 (823)
.++ ....+.+++..++.
T Consensus 391 ~~g--~~~~l~~~~~~G~~ 407 (429)
T PRK01742 391 TQG--LGKVLQLVSADGRF 407 (429)
T ss_pred cCC--CceEEEEEECCCCc
Confidence 542 12234444555543
No 158
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.6e-09 Score=117.33 Aligned_cols=390 Identities=16% Similarity=0.222 Sum_probs=272.1
Q ss_pred EEEeecChHHHHHHHHHhccHHHHHHHHHhcCCCHH----------------------HHHHHHHHHhhhhccCCCHHHH
Q 037368 326 LCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAA----------------------ATAEVLRKYGDHLYSKQDYDEA 383 (823)
Q Consensus 326 ~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~~~~~----------------------~~~~I~~~y~d~L~~k~~y~~A 383 (823)
-+|...+..+.-++-+++..||+|..+-++.++... ....++.+.|.-.+++|...+|
T Consensus 1044 ~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1044 NRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHH
Confidence 345556667777888889999999988877544321 1245667778888999999999
Q ss_pred HHHHHHHhCCcChHHHHHHhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCH
Q 037368 384 MSQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDV 463 (823)
Q Consensus 384 ~~~y~~ti~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~ 463 (823)
+.-|++.-....-.+||..--+.+.-+.|++||.--+++... +...+.|+-.|.|+++...+++||..++ .-++
T Consensus 1124 ieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi~gpN-----~A~i 1197 (1666)
T KOG0985|consen 1124 IESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFIAGPN-----VANI 1197 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHhcCCC-----chhH
Confidence 999999744333458999888889999999999887765543 3444556679999999999999999875 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037368 464 ETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDILLR 543 (823)
Q Consensus 464 ~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~ll~~ 543 (823)
..+=+-|-+.|.|+.|-.++....++.+...-|+.- |+|..|+.--++-..-.. +.+-+..-++. ++ .. |-+
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~L-geyQ~AVD~aRKAns~kt---WK~VcfaCvd~--~E-Fr-lAQ 1269 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYL-GEYQGAVDAARKANSTKT---WKEVCFACVDK--EE-FR-LAQ 1269 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHhhhccchhH---HHHHHHHHhch--hh-hh-HHH
Confidence 888889999999999999988887887776666654 999999887776433221 11111000110 11 11 112
Q ss_pred HhhcCCCCcccCCCCCcccCCCCCHHHHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccccccCCccc
Q 037368 544 LCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSYDLNFPSIS 621 (823)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~~~~~~~~~ 621 (823)
+|.=. ...+--..+.++..+.+ +-++++..||.-+.-.. ....+++.|--||..+ .
T Consensus 1270 iCGL~------------iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLER---AHMgmfTELaiLYsky---k---- 1327 (1666)
T KOG0985|consen 1270 ICGLN------------IIVHADELEELIEYYQDRGYFEELISLLEAGLGLER---AHMGMFTELAILYSKY---K---- 1327 (1666)
T ss_pred hcCce------------EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhH---HHHHHHHHHHHHHHhc---C----
Confidence 33200 01111223456666654 56778888888664321 1357889999999887 2
Q ss_pred ccCcccccccccCCCCCCcccCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhH
Q 037368 622 QLNDGVDLRLRSGSGLPKAEYNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGL 701 (823)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~ 701 (823)
.+|.++-|+- ..+..+.-++++-|.+.-++.+.
T Consensus 1328 -----------------------------------------p~km~EHl~L------FwsRvNipKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1328 -----------------------------------------PEKMMEHLKL------FWSRVNIPKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred -----------------------------------------HHHHHHHHHH------HHHhcchHHHHHHHHHHHHHHHH
Confidence 1566666665 24457788999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHhc-------CChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCCCCHHHHHHHHHHHHhC
Q 037368 702 LYLYEKLKLYKEVIACYTQA-------HDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERD 774 (823)
Q Consensus 702 v~L~~k~g~~~~al~~~~~~-------~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~~~~~~i~~~L~~i~~~ 774 (823)
||||.+-..|+.|....|+. +-++.+|. +.+ +-+||-.++.|+++-.+ ..+.++|..+.-
T Consensus 1361 vfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~---kVa------NvElyYkAi~FYl~~~P---~llnDlL~vL~p- 1427 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIIT---KVA------NVELYYKAIQFYLDFHP---LLLNDLLTVLSP- 1427 (1666)
T ss_pred HHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHH---HHh------hHHHHHHHHHHHHHhCh---HHHHHHHHhccc-
Confidence 99999999999988777763 11223332 233 34899999999998643 245666664432
Q ss_pred CCCChHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 037368 775 DILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEG 814 (823)
Q Consensus 775 ~~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l~~~~~~i~~ 814 (823)
.++.-.++.+++|.+.+ -.||+||+......++.+++
T Consensus 1428 -RlDh~r~v~~f~K~~~l--pLikpyl~~vq~~Nn~avNe 1464 (1666)
T KOG0985|consen 1428 -RLDHTRTVSIFSKAGQL--PLIKPYLRAVQSLNNKAVNE 1464 (1666)
T ss_pred -ccCchHHHHHHHhcCCC--cccHHHHHHHHhcchHHHHH
Confidence 36777899999987765 56999999988776666654
No 159
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.24 E-value=4.6e-10 Score=118.70 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=163.2
Q ss_pred cCCCCeEEEe-eC--CCEEEEEecCCeEEEEcCC--C--eeeEeEee--cccceeEEEEecCCCEEEEEecCCCCccccc
Q 037368 23 EVSGNITCCS-SG--RGKVVIGCDDGAVSLLDRG--L--KFNFGFQA--HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQS 93 (823)
Q Consensus 23 ~~~~~is~~~-~~--~~~l~~gs~dG~i~~~d~~--~--~~~~~~~~--H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~ 93 (823)
..+..|-|.. .+ ..++++|+ .|-|++||-+ + .++..+.. -..-|..+..+|+|..|+++|+-.+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast------ 488 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST------ 488 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccce------
Confidence 3355554433 22 35788886 6679999922 2 23333332 2356888889999999999999776
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 94 AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
|.||||... +|+.-..+. . .. ..+.++|++||.+. ..+.+.||+|.+||.. + ....+
T Consensus 489 ---lsiWDLAap--------Tprikaelt--s-sa--paCyALa~spDakv---cFsccsdGnI~vwDLh---n-q~~Vr 545 (705)
T KOG0639|consen 489 ---LSIWDLAAP--------TPRIKAELT--S-SA--PACYALAISPDAKV---CFSCCSDGNIAVWDLH---N-QTLVR 545 (705)
T ss_pred ---eeeeeccCC--------CcchhhhcC--C-cc--hhhhhhhcCCccce---eeeeccCCcEEEEEcc---c-ceeee
Confidence 999999843 232111111 1 11 12788999999877 6666779999999862 2 23344
Q ss_pred EEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeC-CeEEEEec
Q 037368 174 LQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRP-EAVYFYEV 250 (823)
Q Consensus 174 ~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~-~~I~i~~~ 250 (823)
.+..+...+.+|..++|| +.|+++. ++.|+.||++...++ +-. ...+.+.++...|++. +++|-. +.+.+-.+
T Consensus 546 qfqGhtDGascIdis~dG--tklWTGGlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDG--TKLWTGGLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred cccCCCCCceeEEecCCC--ceeecCCCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccceeeecccCcEEEEec
Confidence 455567789999999999 5677765 567999999753221 111 1234455556668776 455543 46777666
Q ss_pred CCCCccccc---cCCe--EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCE-EEEeccccceeEEEeecCcEEEEEcCC
Q 037368 251 DGRGPCWAF---EGEK--KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRL-IAHSLVVKEVSHMLCEWGNIILVMTDK 323 (823)
Q Consensus 251 ~g~~~~~~~---~g~~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~-i~~~~~i~~v~~v~~~~~~~~vvs~~~ 323 (823)
.+... +.+ +... ..++++|.+.|++.. |.-+..|-.-.+. |..+.+..+|..+-...++-|||+..|
T Consensus 622 skp~k-yqlhlheScVLSlKFa~cGkwfvStGk-----DnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 622 SKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGK-----DNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred CCccc-eeecccccEEEEEEecccCceeeecCc-----hhhhhhccCccccceeeccccCcceeeeeccCceEEEecCC
Confidence 54322 222 2222 235567889888764 5788899765444 444455566666644455667776655
No 160
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.4e-10 Score=117.73 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=135.9
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec--CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK--QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~--~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
..+++|-+.|.|++|| .+++.+..|++|.+.++.+.|.. ....+.|||.||+ ||+||++...+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~---------Vr~wD~Rs~~e----- 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGT---------VRLWDIRSQAE----- 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCe---------EEEEEeecchh-----
Confidence 4688999999999999 66888899999999999999987 5678999999998 99999986432
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe----CCeEEEEEcccccccccceeEEe-cCCCCcceEEE
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD----NGCIYCIKGDIARERITRFKLQV-DNQCSVMGLGF 187 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~----dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~l~f 187 (823)
.+ ..... ..|+....|++..-..+. +|+|+. +-.|.+|+. |......+.+. .+..-||.|.|
T Consensus 107 -~a--~~~~~----~~~~~~f~~ld~nck~~i---i~~GtE~~~s~A~v~lwDv---R~~qq~l~~~~eSH~DDVT~lrF 173 (376)
T KOG1188|consen 107 -SA--RISWT----QQSGTPFICLDLNCKKNI---IACGTELTRSDASVVLWDV---RSEQQLLRQLNESHNDDVTQLRF 173 (376)
T ss_pred -hh--heecc----CCCCCcceEeeccCcCCe---EEeccccccCceEEEEEEe---ccccchhhhhhhhccCcceeEEe
Confidence 11 11111 122123788888767778 999964 567889986 22222123333 35788999999
Q ss_pred eecCCeEEEEEEcCCe-EEEEEecCCCC---cceEEccCCCccceecccCCC--eEEE-eeCCeEEEEecCC
Q 037368 188 RVDGQALQLFAVTPNS-VILFSLQNQPP---KRQFLDNIGCSTNSVAMSDRL--ELII-GRPEAVYFYEVDG 252 (823)
Q Consensus 188 s~dg~~~~l~~~t~~~-V~~~d~~~~~~---~~~~l~~~~~~~~~~~~s~~~--~liv-~~~~~I~i~~~~g 252 (823)
.|... .+|++++.++ |-+||+..... +..++ ++++.+.++.|..++ ++.+ .-.++..+|+.+.
T Consensus 174 HP~~p-nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 174 HPSDP-NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred cCCCC-CeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 99764 5777777666 88999975432 33344 578888899998777 5544 4456888898763
No 161
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.8e-10 Score=125.68 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=136.4
Q ss_pred CCEEEEEecCCeEEEEc-CCC--eeeEeEeecccceeEEEE-ecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RGL--KFNFGFQAHSSSVLFLQQ-LKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~--~~~~~~~~H~~~V~~i~~-~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
++.++++|+|-+|++|+ ..+ -+..+++.|+.-|.|++. -++...+||+|-|+. |.|||+.....
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~---------IflWDin~~~~--- 152 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK---------IFLWDINTGTA--- 152 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc---------EEEEEccCcch---
Confidence 34899999999999999 323 366788899999999999 677788999999998 99999985421
Q ss_pred CCCCCceEEE---EEeccCC-CCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEE
Q 037368 111 SSTSPDCIGI---LRVFTSQ-FPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLG 186 (823)
Q Consensus 111 ~~~~~~~~~~---~~~~~~~-~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~ 186 (823)
+.+.+ +...+.. .|-..|.++|-.+.|.. |+.|+..+.+++|+.. ...|..-+..+...|..|-
T Consensus 153 -----~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~---ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 153 -----TLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI---IVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred -----hhhhhccccccccCCCCCccceeeeecCCcceE---EEecCcccceEEeccc----cccceeeeeccccceEEEE
Confidence 01111 1111101 12134999999999988 9999999999999863 2234444567788899999
Q ss_pred EeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEE-Ee-eCCeEEEEecC
Q 037368 187 FRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IG-RPEAVYFYEVD 251 (823)
Q Consensus 187 fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~-~~~~I~i~~~~ 251 (823)
.++||. .+|.+++++.|++||+..+ .+..++.-|...+..+..+|+-+.+ .| +++.|+.=++.
T Consensus 221 ~~dDGt-~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 221 VNDDGT-RLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred EcCCCC-eEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 999996 4666667788999999754 3455565566667766666665544 33 34567665554
No 162
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=8.3e-11 Score=122.82 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=126.2
Q ss_pred CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
.++.+++|..||++|+|+ ++...+..+.+|.+.|.++.|+|||++|+|+|.| . .+||+....
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~---------~~VW~~~~g------- 217 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-S---------ARVWSVNTG------- 217 (398)
T ss_pred CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-c---------eEEEEeccC-------
Confidence 347899999999999999 8888777899999999999999999999999999 4 999999843
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCC--cceEEEEEeCCeEEEEEcccccc-cccceeEEecCCCCcceEEEee
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPP--ILLIAIGLDNGCIYCIKGDIARE-RITRFKLQVDNQCSVMGLGFRV 189 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~--~~~ia~G~~dG~V~l~~~~~~~~-~~~k~~~~~~~~~~It~l~fs~ 189 (823)
. +++...-++.. ....++.|+.|... .+.+|.-...|.|++|++.+-+. .-.+.+......+.|++++.++
T Consensus 218 -~--~~a~~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~ 291 (398)
T KOG0771|consen 218 -A--ALARKTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD 291 (398)
T ss_pred -c--hhhhcCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC
Confidence 1 23222111111 12556666666511 01155555566777766532110 0011111122256799999999
Q ss_pred cCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE--eeCCeEEEEec
Q 037368 190 DGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII--GRPEAVYFYEV 250 (823)
Q Consensus 190 dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv--~~~~~I~i~~~ 250 (823)
||+ +++++|. +.|-+|+...-+....+-..|+..++.++|+||.+..+ +.+..+.+..+
T Consensus 292 dGk--f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 292 DGK--FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCc--EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 994 6777764 55999987643322223356888889999999887543 44445555443
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.1e-10 Score=110.43 Aligned_cols=200 Identities=13% Similarity=0.047 Sum_probs=129.9
Q ss_pred CEEEEEecCCeEEEEcCC----------CeeeEeEeecccceeEEEEecC--CCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 36 GKVVIGCDDGAVSLLDRG----------LKFNFGFQAHSSSVLFLQQLKQ--RNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~----------~~~~~~~~~H~~~V~~i~~~~~--~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
..+|+++.|+++.||... +....++..-++.|+.|+|.|. |-.||+|+.||+ ||||+.-
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~---------lRIYEA~ 144 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI---------LRIYEAP 144 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcE---------EEEEecC
Confidence 467999999999999731 1223455556789999999984 567899999998 9999875
Q ss_pred CCCCCCCCCCCCceEEEEEec--cCCCCCCceEEEEEecCCCCcceEEEEEeC-----CeEEEEEcccccccccceeE--
Q 037368 104 KMEPEGTSSTSPDCIGILRVF--TSQFPEAKITSFLVLEEAPPILLIAIGLDN-----GCIYCIKGDIARERITRFKL-- 174 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~v~~va~~~d~~~~~~ia~G~~d-----G~V~l~~~~~~~~~~~k~~~-- 174 (823)
..-+. .+=.+.+.+..- ....+.....||.|+|.--..-.||+|+.+ +.++||.-+ +.+.|...
T Consensus 145 dp~nL----s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~---e~~rKw~kva 217 (361)
T KOG2445|consen 145 DPMNL----SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN---ENGRKWLKVA 217 (361)
T ss_pred Ccccc----ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec---CCcceeeeeh
Confidence 32100 000011111100 000111338899998754221229999966 488999643 11223332
Q ss_pred -EecCCCCcceEEEeecC-Ce-EEEEEEcCCeEEEEEecCCC------------C-------cceEEccCCCccceeccc
Q 037368 175 -QVDNQCSVMGLGFRVDG-QA-LQLFAVTPNSVILFSLQNQP------------P-------KRQFLDNIGCSTNSVAMS 232 (823)
Q Consensus 175 -~~~~~~~It~l~fs~dg-~~-~~l~~~t~~~V~~~d~~~~~------------~-------~~~~l~~~~~~~~~~~~s 232 (823)
+.....||+.|+|.|+- .. +.|++++.++|++|.+.... . ....+++|.+++..+.|+
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN 297 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN 297 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe
Confidence 33568999999999973 22 57888898889999987411 0 112257888999999998
Q ss_pred CCCeEEEe--eCCeEEEEecC
Q 037368 233 DRLELIIG--RPEAVYFYEVD 251 (823)
Q Consensus 233 ~~~~liv~--~~~~I~i~~~~ 251 (823)
=.|.++.+ .|++|++|...
T Consensus 298 mtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 298 MTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeEEeecCCCceeeehhhh
Confidence 88887754 34689999754
No 164
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.17 E-value=7.9e-10 Score=110.01 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=134.1
Q ss_pred EEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCE-EEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 30 CCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNF-LVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 30 ~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~-l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
-++.....+++|+.+-.|++.| .+|...+++.||+..|..+.|+|...+ |+|+|.||+ ||+||+.+..
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~---------irlWDiRras- 222 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA---------IRLWDIRRAS- 222 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce---------EEEEEeeccc-
Confidence 3344456789999999999999 889999999999999999999998876 699999998 9999998631
Q ss_pred CCCCCCCCceEEEEEeccCCCC---------CCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccc-cceeEEec
Q 037368 108 EGTSSTSPDCIGILRVFTSQFP---------EAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERI-TRFKLQVD 177 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p---------~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~-~k~~~~~~ 177 (823)
-|.+++..+....| .++|..+||+.|+.+ ++..+.|..+++|+..--++.. .--.+.
T Consensus 223 --------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~---l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-- 289 (397)
T KOG4283|consen 223 --------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY---LASCGTDDRIRVWNMESGRNTLREFGPII-- 289 (397)
T ss_pred --------ceeEEeecccCccCccccccccccceeeeeeecccchh---hhhccCccceEEeecccCccccccccccc--
Confidence 15555554421111 256999999999999 9988889999999743100000 000001
Q ss_pred CCCCcceEEEe---ecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe--EEEeeCCeEEEEec
Q 037368 178 NQCSVMGLGFR---VDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE--LIIGRPEAVYFYEV 250 (823)
Q Consensus 178 ~~~~It~l~fs---~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~--liv~~~~~I~i~~~ 250 (823)
...-++.+|. .+. ..+++.-.++++.++.+-.. ...+.++.|+..++|..+.|+=+ +....+..|+-|.+
T Consensus 290 -~n~~~~~~~~~~~~~s-~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 290 -HNQTTSFAVHIQSMDS-DVFVLFPNDGSLALLNLLEG-SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred -ccccccceEEEeeccc-ceEEEEecCCeEEEEEccCc-eEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1122233332 111 13455556678888887543 35677788888889988877554 33345667888876
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.2e-09 Score=104.25 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=114.8
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
|.|+++... .+.+++++.||.++-|| .+|+..++|+||+.-|.++.--.....+.|+++||| +||||+
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt---------vRvWd~ 185 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT---------VRVWDT 185 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc---------EEEEec
Confidence 468877764 46788888999999999 889999999999999999987445567899999999 999999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccC---CCCC--CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTS---QFPE--AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~---~~p~--~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
.+. +|++++...++ .+|+ ..|.|+|.+.| . +++|. .-+..+|.. +.+-...++.
T Consensus 186 kt~----------k~v~~ie~yk~~~~lRp~~g~wigala~~ed--W---lvCGg-Gp~lslwhL-----rsse~t~vfp 244 (325)
T KOG0649|consen 186 KTQ----------KHVSMIEPYKNPNLLRPDWGKWIGALAVNED--W---LVCGG-GPKLSLWHL-----RSSESTCVFP 244 (325)
T ss_pred ccc----------ceeEEeccccChhhcCcccCceeEEEeccCc--e---EEecC-CCceeEEec-----cCCCceEEEe
Confidence 853 36766664432 2342 34888888877 7 88886 567889975 2333344555
Q ss_pred CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC
Q 037368 178 NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
-..+|.-+.|-.| .+|.++..+.|..|.+.+
T Consensus 245 ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cccceeEeeeecc---eEEEeccccceeeeeecc
Confidence 5788999999876 345555456799998875
No 166
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.17 E-value=2.9e-09 Score=113.10 Aligned_cols=185 Identities=14% Similarity=0.283 Sum_probs=134.6
Q ss_pred CeEEEeeCCCEEEEEecCCeEEEEc--CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 27 NITCCSSGRGKVVIGCDDGAVSLLD--RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 27 ~is~~~~~~~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
.|-.++-+.+-|++||....|..=+ ..+++ .-++|....+.++.+|+.+.++|||.|++ |++|+ +.
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~--~v~gh~delwgla~hps~~q~~T~gqdk~---------v~lW~-~~ 398 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTL--TVQGHGDELWGLATHPSKNQLLTCGQDKH---------VRLWN-DH 398 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceE--EEEecccceeeEEcCCChhheeeccCcce---------EEEcc-CC
Confidence 4555666554488998887776544 23333 56789999999999999999999999998 99999 32
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcce
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
.+.-.+. . ..| +.|++|+|.| . +|+|+..|.-.+.+.. .. -...++..++|++.
T Consensus 399 ---------k~~wt~~---~--~d~---~~~~~fhpsg-~---va~Gt~~G~w~V~d~e----~~-~lv~~~~d~~~ls~ 452 (626)
T KOG2106|consen 399 ---------KLEWTKI---I--EDP---AECADFHPSG-V---VAVGTATGRWFVLDTE----TQ-DLVTIHTDNEQLSV 452 (626)
T ss_pred ---------ceeEEEE---e--cCc---eeEeeccCcc-e---EEEeeccceEEEEecc----cc-eeEEEEecCCceEE
Confidence 2221111 1 245 9999999998 8 9999999998888753 11 11123334899999
Q ss_pred EEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEE-ccCCCccceecccCCCeEEEeeC-C-eEEEEecC
Q 037368 185 LGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFL-DNIGCSTNSVAMSDRLELIIGRP-E-AVYFYEVD 251 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l-~~~~~~~~~~~~s~~~~liv~~~-~-~I~i~~~~ 251 (823)
++|+|+| ..+++++.+ .|++|.++..+...... ..+|.++..+.||+|++++++.. | .|-+|.+.
T Consensus 453 v~ysp~G--~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 453 VRYSPDG--AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEcCCC--CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 9999999 688888865 59999987655322222 34567788899999999988654 4 68889543
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.8e-09 Score=123.43 Aligned_cols=240 Identities=13% Similarity=0.215 Sum_probs=144.1
Q ss_pred CCCeEEEeeC----CCEEEEEecCCeEEEEc--CC----CeeeEeEeeccc-----ce--eEEEEecCCCEEEEEecCCC
Q 037368 25 SGNITCCSSG----RGKVVIGCDDGAVSLLD--RG----LKFNFGFQAHSS-----SV--LFLQQLKQRNFLVTVGEDEQ 87 (823)
Q Consensus 25 ~~~is~~~~~----~~~l~~gs~dG~i~~~d--~~----~~~~~~~~~H~~-----~V--~~i~~~~~~~~l~s~s~D~~ 87 (823)
+..||.++.- ...+++||.||.|+||+ .+ .+++..|.+-++ .= .-+.|-.....|.+.|+-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 4457776652 24789999999999998 22 245555654221 11 22333344456666665444
Q ss_pred CcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEe-cCCCCcceEEEEEeCCeEEEEEccccc
Q 037368 88 VSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL-EEAPPILLIAIGLDNGCIYCIKGDIAR 166 (823)
Q Consensus 88 ~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~-~d~~~~~~ia~G~~dG~V~l~~~~~~~ 166 (823)
|+|||..+- .+++.+.... +.-|++++-+ +.|+. ||+|++||.|++||..+..
T Consensus 1189 ---------IRIWDa~~E----------~~~~diP~~s----~t~vTaLS~~~~~gn~---i~AGfaDGsvRvyD~R~a~ 1242 (1387)
T KOG1517|consen 1189 ---------IRIWDAHKE----------QVVADIPYGS----STLVTALSADLVHGNI---IAAGFADGSVRVYDRRMAP 1242 (1387)
T ss_pred ---------EEEEecccc----------eeEeecccCC----CccceeecccccCCce---EEEeecCCceEEeecccCC
Confidence 999999852 2444443221 1226666554 34578 9999999999999864311
Q ss_pred ccccceeEEecCC--CCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC--CcceEEc--cCCCccceecccCCCeEEE-
Q 037368 167 ERITRFKLQVDNQ--CSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP--PKRQFLD--NIGCSTNSVAMSDRLELII- 239 (823)
Q Consensus 167 ~~~~k~~~~~~~~--~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~--~~~~~l~--~~~~~~~~~~~s~~~~liv- 239 (823)
+.....+..+++ ++|.++++.+.|-..++.+++++.|++||++... ....+-. ..|+.++++..-++..+++
T Consensus 1243 -~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1243 -PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred -ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeee
Confidence 122334444554 4599999988774334455556779999998632 1111111 2355678888777776655
Q ss_pred eeCCeEEEEecCCCCcc-c----ccc----CCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 240 GRPEAVYFYEVDGRGPC-W----AFE----GEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 240 ~~~~~I~i~~~~g~~~~-~----~~~----g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
|++..|+||++.|+..- + .|. |+..+++++...++++... .|.+|.||....
T Consensus 1322 Gs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~---~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1322 GSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS---ADSTVSIYSCEK 1382 (1387)
T ss_pred cCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhcc---CCceEEEeecCC
Confidence 45578999999876321 1 122 3345666665544433221 568999997654
No 168
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.16 E-value=8.5e-10 Score=104.41 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=111.3
Q ss_pred CCcChHHHHHHhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhc-CCCCCCcccCCHHHHHHHH
Q 037368 392 GHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIK-GEDGVGEHKFDVETAIRVC 470 (823)
Q Consensus 392 ~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~-~~~~~~~~~~d~~~ai~vl 470 (823)
..++|+.||..|.+.+....|+.||+.+...+.++..+.++|+.+|++.+ ..++..|++ +.+ .||++.|+++|
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~-----~yd~~~~~~~c 79 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSN-----HYDIEKVGKLC 79 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccc-----cCCHHHHHHHH
Confidence 46779999999999999999999999988776677888888999999874 456778887 543 79999999999
Q ss_pred HhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHH
Q 037368 471 RAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEY 525 (823)
Q Consensus 471 ~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~ 525 (823)
++++.++++.+++.+.|+++.+++++++..++++.|++|.++...++.+..+.+|
T Consensus 80 ~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~ 134 (140)
T smart00299 80 EKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKA 134 (140)
T ss_pred HHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999888999999999997777666666555
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.15 E-value=6.7e-10 Score=111.96 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=133.3
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEeec--cc---ceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQAH--SS---SVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~~H--~~---~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
..+++.+.+.-||+|| -+|++..+|++. .. .-.+++|+|||..|+. |...+ |||+|+.+.
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-Gykrc---------irvFdt~Rp---- 189 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRC---------IRVFDTSRP---- 189 (406)
T ss_pred ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccce---------EEEeeccCC----
Confidence 4678888999999999 788888889884 33 3467999999999884 46555 999999652
Q ss_pred CCCCCCceEEEEEeccCCCC-CCceEEEEEecCCC-CcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEE
Q 037368 110 TSSTSPDCIGILRVFTSQFP-EAKITSFLVLEEAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGF 187 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p-~~~v~~va~~~d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~f 187 (823)
|.-..+.+.. +...+- .+-+.|+||+|-.. . +|+|+-...+-||.-+ ......++.++.+.||-|.|
T Consensus 190 ---Gr~c~vy~t~-~~~k~gq~giisc~a~sP~~~~~---~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 190 ---GRDCPVYTTV-TKGKFGQKGIISCFAFSPMDSKT---LAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred ---CCCCcchhhh-hcccccccceeeeeeccCCCCcc---eeeecccceeeeEecC----CCCceeeecccCCCeeeEEe
Confidence 1111111111 110110 03389999999644 5 9999999999998653 12234455677889999999
Q ss_pred eecCCeEEEEEEc--CCeEEEEEecCCCCcceEEccCCCcc-ceecc--cCCCeEEEee--CCeEEEEecCCCC
Q 037368 188 RVDGQALQLFAVT--PNSVILFSLQNQPPKRQFLDNIGCST-NSVAM--SDRLELIIGR--PEAVYFYEVDGRG 254 (823)
Q Consensus 188 s~dg~~~~l~~~t--~~~V~~~d~~~~~~~~~~l~~~~~~~-~~~~~--s~~~~liv~~--~~~I~i~~~~g~~ 254 (823)
.++| ..+|++. ++.|.+||++....+...|.+|-..- ..+-| .|.|++++++ ++.|.+|+.++-+
T Consensus 259 ~edG--n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 259 CEDG--NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ccCc--CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence 9999 4688886 45799999986555666665554322 23444 4888888765 4689999988644
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.14 E-value=5.3e-09 Score=108.73 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=101.0
Q ss_pred CCCeEEEeeCC---CEEEEEecCCeEEEEc--C---CC---e--eeEeEeecccceeEEEEecCCCEEEEEecCCCCccc
Q 037368 25 SGNITCCSSGR---GKVVIGCDDGAVSLLD--R---GL---K--FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQ 91 (823)
Q Consensus 25 ~~~is~~~~~~---~~l~~gs~dG~i~~~d--~---~~---~--~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~ 91 (823)
+.+|..+.+.. +++++|+.|..|++|- + .+ + ...++..|+..|+.+.|+|+|++|||||++|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~---- 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE---- 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce----
Confidence 44565555543 4899999999999996 1 12 1 23345679999999999999999999999998
Q ss_pred ccceeEEEEeCCCCC---CCCCCCCCCc---eEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccc
Q 037368 92 QSAVCLKVFDLDKME---PEGTSSTSPD---CIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIA 165 (823)
Q Consensus 92 ~~~~~vkvWdl~~~~---~~~~~~~~~~---~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~ 165 (823)
|.+|-..... ..+...-.++ ..+.++.+ ...|.-++|+||+.. +++|+.|.++++|+..
T Consensus 89 -----v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h-----~~diydL~Ws~d~~~---l~s~s~dns~~l~Dv~-- 153 (434)
T KOG1009|consen 89 -----VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGH-----RDDIYDLAWSPDSNF---LVSGSVDNSVRLWDVH-- 153 (434)
T ss_pred -----EEEEEecCcCCccccchhhhCccceEEEEEeccc-----ccchhhhhccCCCce---eeeeeccceEEEEEec--
Confidence 9999765210 0000000010 11222322 134889999999999 9999999999999863
Q ss_pred cccccceeEEecCCCCcceEEEeecCC
Q 037368 166 RERITRFKLQVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 166 ~~~~~k~~~~~~~~~~It~l~fs~dg~ 192 (823)
.+.....+-+++.-|.+++|.|-++
T Consensus 154 --~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 154 --AGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred --cceeEeeccccccccceeecchhhh
Confidence 3444444456677788999887653
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.14 E-value=3.5e-10 Score=114.30 Aligned_cols=209 Identities=17% Similarity=0.176 Sum_probs=133.1
Q ss_pred CCCeEEEeeCC---CEEEEEecCCeEEEEc-CCCeeeEeEe---ecccceeEEEEecCCCEEEEEecCCCCcccccceeE
Q 037368 25 SGNITCCSSGR---GKVVIGCDDGAVSLLD-RGLKFNFGFQ---AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCL 97 (823)
Q Consensus 25 ~~~is~~~~~~---~~l~~gs~dG~i~~~d-~~~~~~~~~~---~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~v 97 (823)
+..|+.+-+++ +.+++||.|..|++|+ .+..++..|- +|...|.++.|+++|.+++|||.|.+ +
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs---------l 205 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS---------L 205 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce---------E
Confidence 44566666653 4789999999999999 8888887776 59999999999999999999999998 9
Q ss_pred EEEeCCCCCC----------CCCCCCCCceEE--EEEecc----CCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 98 KVFDLDKMEP----------EGTSSTSPDCIG--ILRVFT----SQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 98 kvWdl~~~~~----------~~~~~~~~~~~~--~~~~~~----~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
++|++...+- ...++..|.... .+..|. +..+ |-|+.|--| . +.+-+-++.|..|+
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny---VDCvrw~gd--~---ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY---VDCVRWFGD--F---ILSKSCENAIVCWK 277 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch---HHHHHHHhh--h---eeecccCceEEEEe
Confidence 9999984320 011111121100 011110 0112 555655543 4 66667788999998
Q ss_pred c-ccccc-----c-ccceeEEec---CCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCc-ceEE--ccCCCccc
Q 037368 162 G-DIARE-----R-ITRFKLQVD---NQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPK-RQFL--DNIGCSTN 227 (823)
Q Consensus 162 ~-~~~~~-----~-~~k~~~~~~---~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~-~~~l--~~~~~~~~ 227 (823)
. .+-.+ + .....++.+ ....|+-|.|+-|.-...|+.++. +.|++||++...++ ..++ ...+..+.
T Consensus 278 pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 278 PGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVR 357 (385)
T ss_pred cchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceee
Confidence 5 33111 1 111222222 256788888876642245666665 45999999865431 1222 23356677
Q ss_pred eecccCCCeEEE-eeC-CeEEEEec
Q 037368 228 SVAMSDRLELII-GRP-EAVYFYEV 250 (823)
Q Consensus 228 ~~~~s~~~~liv-~~~-~~I~i~~~ 250 (823)
..+||.||.+++ ..+ ++|+-|+.
T Consensus 358 Q~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 358 QTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeecccCcEEEEEeCCCcEEEEEe
Confidence 889999998765 344 57877874
No 172
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=2.7e-09 Score=124.04 Aligned_cols=221 Identities=15% Similarity=0.205 Sum_probs=139.3
Q ss_pred EcCCCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCC
Q 037368 50 LDRGLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQF 128 (823)
Q Consensus 50 ~d~~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (823)
|+..|.++..+.-|+..|..++.++.. .+++|||+||| ||||++.+.... .++..+..+.. .
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGt---------VKvW~~~k~~~~---~~s~rS~ltys-----~ 1096 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGT---------VKVWNLRKLEGE---GGSARSELTYS-----P 1096 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCce---------EEEeeehhhhcC---cceeeeeEEEe-----c
Confidence 777788888888899999999998766 99999999998 999999875421 11212222221 1
Q ss_pred CCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce---eE-Ee--cCCCCcceE-EEeecCCe-EEEEEEc
Q 037368 129 PEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF---KL-QV--DNQCSVMGL-GFRVDGQA-LQLFAVT 200 (823)
Q Consensus 129 p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~---~~-~~--~~~~~It~l-~fs~dg~~-~~l~~~t 200 (823)
.++++.+++..+.+.. +|+|+.||.|++.+.+-. ...+. .. +. ...++++++ +|....++ .+++++.
T Consensus 1097 ~~sr~~~vt~~~~~~~---~Av~t~DG~v~~~~id~~--~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQ---FAVSTKDGSVRVLRIDHY--NVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred cCCceEEEEeccCCCe---EEEEcCCCeEEEEEcccc--ccccceeeeeecccccCCCceEEeecccccccceeEEEEEe
Confidence 1244999999999999 999999999999987631 11111 11 11 124666665 45444333 3445445
Q ss_pred CCeEEEEEecCCCC-cceEE-ccCCCccceecccCCCe-EEEeeC-CeEEEEecCCCCccccccCC------eEEEEee-
Q 037368 201 PNSVILFSLQNQPP-KRQFL-DNIGCSTNSVAMSDRLE-LIIGRP-EAVYFYEVDGRGPCWAFEGE------KKLLGWF- 269 (823)
Q Consensus 201 ~~~V~~~d~~~~~~-~~~~l-~~~~~~~~~~~~s~~~~-liv~~~-~~I~i~~~~g~~~~~~~~g~------~~~i~~~- 269 (823)
-++|..||+..... ...-. ..|| .+.+++.+|.+. +++|.. |.+.+||++=+.+...|+-+ +..+.++
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence 57799999875421 11111 1343 477888898776 556654 56889998744443333221 1223333
Q ss_pred C--cEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 270 R--GYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 270 ~--~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+ .+.++++.. .-+.|.+|+..++.
T Consensus 1251 ~~~S~~vs~~~~---~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1251 PQESVSVSAGSS---SNNEVSTWNMETGL 1276 (1431)
T ss_pred CCCceEEEeccc---CCCceeeeecccCc
Confidence 2 355554432 34789999998764
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.10 E-value=2.8e-09 Score=110.16 Aligned_cols=189 Identities=11% Similarity=0.067 Sum_probs=117.9
Q ss_pred CCCEEEE---EecCCeEEEEc--CCCee---eEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 34 GRGKVVI---GCDDGAVSLLD--RGLKF---NFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 34 ~~~~l~~---gs~dG~i~~~d--~~~~~---~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
.+.+|++ |+..|-..+.- ..|++ .-.+.||+++|..+.|.| +.+.+||||+|.+ |+||++-.
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~---------v~vW~IPe 113 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK---------VMVWQIPE 113 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce---------EEEEECCC
Confidence 4456643 23333444433 44543 235679999999999999 4467899999998 99999864
Q ss_pred CCCCCCCCCCC-ceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCc
Q 037368 105 MEPEGTSSTSP-DCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSV 182 (823)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~I 182 (823)
... +..+ ..+..+..| +. +|-.|+|||-. +. +++.+.|.+|.+|+.. .+. ..+-..+..-|
T Consensus 114 ~~l----~~~ltepvv~L~gH--~r---rVg~V~wHPtA~NV---Llsag~Dn~v~iWnv~----tge-ali~l~hpd~i 176 (472)
T KOG0303|consen 114 NGL----TRDLTEPVVELYGH--QR---RVGLVQWHPTAPNV---LLSAGSDNTVSIWNVG----TGE-ALITLDHPDMV 176 (472)
T ss_pred ccc----ccCcccceEEEeec--ce---eEEEEeecccchhh---HhhccCCceEEEEecc----CCc-eeeecCCCCeE
Confidence 321 0000 113334433 22 39999999965 34 7777779999999864 222 12223478889
Q ss_pred ceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEE-ccCCCccceecccCCCeEEEee-----CCeEEEEecC
Q 037368 183 MGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFL-DNIGCSTNSVAMSDRLELIIGR-----PEAVYFYEVD 251 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l-~~~~~~~~~~~~s~~~~liv~~-----~~~I~i~~~~ 251 (823)
++++|+.|| ..+++++ +.+|++||..... ....- ...|.......|-.+|.+++.+ +..+-+|+.+
T Consensus 177 ~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~-~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 177 YSMSFNRDG--SLLCTTCKDKKVRVIDPRRGT-VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred EEEEeccCC--ceeeeecccceeEEEcCCCCc-EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 999999999 4555555 4569999987532 22222 2234444455666667665532 2367788875
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.08 E-value=1e-09 Score=118.90 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=120.9
Q ss_pred CCEEEEEecCCeEEEEc--CC------CeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD--RG------LKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d--~~------~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
+..|++|+.||.|++|. .+ .++.+.+++|...|.++.|+| ..+.|+++|.|.| |++||+...
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T---------i~lWDl~~~ 710 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST---------IELWDLANA 710 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce---------eeeeehhhh
Confidence 46899999999999997 22 234567899999999999999 5588999999998 999999853
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc--
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM-- 183 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It-- 183 (823)
. -.| .+. +++ ..|..+||+|||+. +|+.+.||+|++|+.. ++..-++++++||-
T Consensus 711 ~--------~~~--~l~--gHt---dqIf~~AWSpdGr~---~AtVcKDg~~rVy~Pr------s~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 711 K--------LYS--RLV--GHT---DQIFGIAWSPDGRR---IATVCKDGTLRVYEPR------SREQPVYEGKGPVGTR 766 (1012)
T ss_pred h--------hhh--eec--cCc---CceeEEEECCCCcc---eeeeecCceEEEeCCC------CCCCccccCCCCccCc
Confidence 2 111 222 222 23999999999999 9999999999999752 12233567776665
Q ss_pred --eEEEeecCCeEEEEEEcCC----eEEEEEecCCC-Ccc--eEEccCCCccceecccCCCe--EEEeeCC-eEEEEecC
Q 037368 184 --GLGFRVDGQALQLFAVTPN----SVILFSLQNQP-PKR--QFLDNIGCSTNSVAMSDRLE--LIIGRPE-AVYFYEVD 251 (823)
Q Consensus 184 --~l~fs~dg~~~~l~~~t~~----~V~~~d~~~~~-~~~--~~l~~~~~~~~~~~~s~~~~--liv~~~~-~I~i~~~~ 251 (823)
.|-|.-||. .+++++-+. +|.+|+-..-. .+. ..++-....+ --.+.+|.. |++|.+| .|++|.+-
T Consensus 767 gARi~wacdgr-~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~L-vP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 767 GARILWACDGR-IVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPL-VPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ceeEEEEecCc-EEEEecccccchhhhhhhhhhhccCCcceeeeecccCccc-cccccCCCceEEEecCCCceEEEEEec
Confidence 466777774 334444332 37777754321 122 2233111111 112334443 4566555 79999875
Q ss_pred CC
Q 037368 252 GR 253 (823)
Q Consensus 252 g~ 253 (823)
-.
T Consensus 845 ~e 846 (1012)
T KOG1445|consen 845 YE 846 (1012)
T ss_pred CC
Confidence 33
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.7e-09 Score=116.74 Aligned_cols=241 Identities=10% Similarity=0.082 Sum_probs=139.6
Q ss_pred eEEEeeCC--CEEEEEecCCeEEEEcC---------CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCccccccee
Q 037368 28 ITCCSSGR--GKVVIGCDDGAVSLLDR---------GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVC 96 (823)
Q Consensus 28 is~~~~~~--~~l~~gs~dG~i~~~d~---------~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~ 96 (823)
|....+++ ..|++|+.||+|++|+- ..+++.+|+||.++|.|+++.+.++.+.|+|-||+
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~--------- 367 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT--------- 367 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce---------
Confidence 44444443 68999999999999982 23568899999999999999999999999999998
Q ss_pred EEEEeCCCCCCCCCCCCCCceE-EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE
Q 037368 97 LKVFDLDKMEPEGTSSTSPDCI-GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ 175 (823)
Q Consensus 97 vkvWdl~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~ 175 (823)
|+.|++-...... .+..|..+ .++. +++ ..|+.+++|+.-.. +++.+.||+|++|... +.-..++
T Consensus 368 I~~w~~p~n~dp~-ds~dp~vl~~~l~--Ght---davw~l~~s~~~~~---Llscs~DgTvr~w~~~-----~~~~~~f 433 (577)
T KOG0642|consen 368 IRCWNLPPNQDPD-DSYDPSVLSGTLL--GHT---DAVWLLALSSTKDR---LLSCSSDGTVRLWEPT-----EESPCTF 433 (577)
T ss_pred eeeeccCCCCCcc-cccCcchhcccee--ccc---cceeeeeecccccc---eeeecCCceEEeeccC-----CcCcccc
Confidence 9999876311000 01112111 1222 212 33999999998888 9999999999999742 1111222
Q ss_pred ecC--CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCC--CCcceEEccC-------CCccceecccCCCeEEEe-e-C
Q 037368 176 VDN--QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQ--PPKRQFLDNI-------GCSTNSVAMSDRLELIIG-R-P 242 (823)
Q Consensus 176 ~~~--~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~--~~~~~~l~~~-------~~~~~~~~~s~~~~liv~-~-~ 242 (823)
-.. .+-=+++.|.... ....+++ .....+++... .+...+++.. ...++.+.+.|.+-+..+ - +
T Consensus 434 ~~~~e~g~Plsvd~~ss~--~a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed 510 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSR--PAHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHED 510 (577)
T ss_pred CCccccCCcceEeeccch--hHhhhhh-cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccC
Confidence 111 2223455553221 0111111 11222222111 1112222211 122334455565554433 3 3
Q ss_pred CeEEEEecCCCCccccccCC-----eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEE
Q 037368 243 EAVYFYEVDGRGPCWAFEGE-----KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 243 ~~I~i~~~~g~~~~~~~~g~-----~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~ 299 (823)
.+|++++...-.+...-..| ...+.+.|.|+++++. ++.+++|.+..+.+..
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-----d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-----DGSVRLWKLDVKTCVL 567 (577)
T ss_pred CceecccccccccchheeeccceecceeecCCCceEEeecC-----Cceeehhhccchheee
Confidence 48888886522121111122 2245557889999985 4899999988776654
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.08 E-value=7.1e-09 Score=117.29 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=133.7
Q ss_pred CcCCCCeEEEeeC---CCEEEEEecCCeEEEEc-CCCee--eE--eEe--ecccceeEEEEecCC--CEEEEEecCCCCc
Q 037368 22 EEVSGNITCCSSG---RGKVVIGCDDGAVSLLD-RGLKF--NF--GFQ--AHSSSVLFLQQLKQR--NFLVTVGEDEQVS 89 (823)
Q Consensus 22 ~~~~~~is~~~~~---~~~l~~gs~dG~i~~~d-~~~~~--~~--~~~--~H~~~V~~i~~~~~~--~~l~s~s~D~~~~ 89 (823)
+..+..|.|++++ +..++.|+.+|.|-+|| +.+.. .. ++. .|+.+|+.+.+..+- .-++|+|.||+
T Consensus 239 ~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~-- 316 (555)
T KOG1587|consen 239 LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS-- 316 (555)
T ss_pred EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc--
Confidence 4567778888875 46889999999999999 43332 11 233 377899999997633 44899999998
Q ss_pred ccccceeEEEEeCCCCCCCCCCCCCCc---eEEEEEec-c-CCCCCCceEEEEEecC-CCCcceEEEEEeCCeEEE-EEc
Q 037368 90 AQQSAVCLKVFDLDKMEPEGTSSTSPD---CIGILRVF-T-SQFPEAKITSFLVLEE-APPILLIAIGLDNGCIYC-IKG 162 (823)
Q Consensus 90 ~~~~~~~vkvWdl~~~~~~~~~~~~~~---~~~~~~~~-~-~~~p~~~v~~va~~~d-~~~~~~ia~G~~dG~V~l-~~~ 162 (823)
|+.|+++... .|. ++.. ..+ + .......+++++|.+. -.. +.+|+..|.|.- .+.
T Consensus 317 -------i~~W~~~~l~-------~P~e~~~~~~-~~~~~~~~~~~~~~t~~~F~~~~p~~---FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 317 -------ICSWDTDMLS-------LPVEGLLLES-KKHKGQQSSKAVGATSLKFEPTDPNH---FIVGTEEGKVYKGCRK 378 (555)
T ss_pred -------Eeeeeccccc-------cchhhccccc-ccccccccccccceeeEeeccCCCce---EEEEcCCcEEEEEecc
Confidence 9999987542 111 0100 000 0 0000123899999874 346 999999999986 332
Q ss_pred cccccccc----cee-EEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCC--
Q 037368 163 DIARERIT----RFK-LQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-- 235 (823)
Q Consensus 163 ~~~~~~~~----k~~-~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-- 235 (823)
... .+. +.. ....+.++|+.+.++|=+. .++.++.+-+|++|.......|...++.+...+.+++|||..
T Consensus 379 g~~--~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 379 GYT--PAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA 455 (555)
T ss_pred CCc--ccccccccccccccccCcceEeeecCCCcc-ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCce
Confidence 210 011 111 1123578999999998764 234444577899999763334555555555558889999844
Q ss_pred eEEEeeC-CeEEEEecC
Q 037368 236 ELIIGRP-EAVYFYEVD 251 (823)
Q Consensus 236 ~liv~~~-~~I~i~~~~ 251 (823)
-|+++.+ +.|.+||..
T Consensus 456 vF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLL 472 (555)
T ss_pred EEEEEcCCCceehhhhh
Confidence 5777764 689999975
No 177
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=99.07 E-value=1.4e-11 Score=117.08 Aligned_cols=131 Identities=33% Similarity=0.503 Sum_probs=114.0
Q ss_pred HHhCCcChHHHHHHhhchhhHHHHHHHHHHHHHcC-CCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHH
Q 037368 389 LTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKG-FASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAI 467 (823)
Q Consensus 389 ~ti~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~-~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai 467 (823)
++....+++.||..|.+.+....|+.||+.+...+ ..+..+.+.|+.+|++.++.+++.+|+++.+ .||++.+.
T Consensus 3 ~~~~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-----~yd~~~~~ 77 (143)
T PF00637_consen 3 ESTDPLEISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-----NYDLDKAL 77 (143)
T ss_dssp HHCTTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-----SS-CTHHH
T ss_pred cCCCccCHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-----ccCHHHHH
Confidence 45567788999999999999999999999988544 4668888899999999977789999999875 59999999
Q ss_pred HHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHH
Q 037368 468 RVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEY 525 (823)
Q Consensus 468 ~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~ 525 (823)
++|.++|.+++|.+++.+.|+|+.++++ +...+++++|++|..+.+.++++..+.+|
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~~~~a~e~~~~~~~~~l~~~l~~~ 134 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKDYEEAIEYAKKVDDPELWEQLLKY 134 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHCSCCCTTTGGGCSSSHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHccHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999999999999999999998 66669999999999999988877777776
No 178
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=9.3e-08 Score=110.54 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=72.6
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEcCCCeeeE-eEeec-ccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLDRGLKFNF-GFQAH-SSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~-~~~~H-~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
++..+.-...++.||..|+|-..|-+|++-. ...-| +++|++++|+.+|.+++.|=.+|. |.+||....
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~---------V~v~D~~~~ 162 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH---------VTVWDMHRA 162 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc---------EEEEEccCC
Confidence 4444445678999999999999996666321 11123 489999999999999988888887 999999853
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCe
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGC 156 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~ 156 (823)
+ .++.+..+ +.|...|-.+-+..+++. +.++-..|+
T Consensus 163 k----------~l~~i~e~--~ap~t~vi~v~~t~~nS~---llt~D~~Gs 198 (1206)
T KOG2079|consen 163 K----------ILKVITEH--GAPVTGVIFVGRTSQNSK---LLTSDTGGS 198 (1206)
T ss_pred c----------ceeeeeec--CCccceEEEEEEeCCCcE---EEEccCCCc
Confidence 2 35555433 455444555566666666 777766665
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.03 E-value=9.9e-09 Score=102.28 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=121.4
Q ss_pred CCEEEEEecCCeEEEEc-CC---CeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RG---LKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~---~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
+++|.+.|-|-+..+|| .. |.+...+-||...|..|+|..++ +.+||+|.||. ||++||...+
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---------vRmFDLR~le--- 230 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---------VRMFDLRSLE--- 230 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---------EEEEEecccc---
Confidence 46889999999999999 33 44555788999999999999854 78999999998 9999998653
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecC-CCCcceEEEE-EeCCeEEEEEcccccccccceeEEecCCCCcceEEE
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEE-APPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGF 187 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d-~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~f 187 (823)
..|+-..+ +.|......+++++. -++ +|+- ....+|.+.+.. -.......+..+.++|.+|+|
T Consensus 231 --------HSTIIYE~-p~~~~pLlRLswnkqDpny---mATf~~dS~~V~iLDiR---~P~tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 231 --------HSTIIYED-PSPSTPLLRLSWNKQDPNY---MATFAMDSNKVVILDIR---VPCTPVARLRNHQASVNGIAW 295 (364)
T ss_pred --------cceEEecC-CCCCCcceeeccCcCCchH---HhhhhcCCceEEEEEec---CCCcceehhhcCcccccceEe
Confidence 11332221 122123777888764 344 4443 334577777752 122222234567899999999
Q ss_pred eecCCeEEEEEEc-CCeEEEEEecCCCC-----cceEEccCCCccceecccC--CCeEEEeeCCeEEE
Q 037368 188 RVDGQALQLFAVT-PNSVILFSLQNQPP-----KRQFLDNIGCSTNSVAMSD--RLELIIGRPEAVYF 247 (823)
Q Consensus 188 s~dg~~~~l~~~t-~~~V~~~d~~~~~~-----~~~~l~~~~~~~~~~~~s~--~~~liv~~~~~I~i 247 (823)
.|.... .++++. +.++.+||+..-.. |.... ..+.+++-+.|++ .+.++++.++.+.+
T Consensus 296 aPhS~~-hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 296 APHSSS-HICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred cCCCCc-eeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecCeeeE
Confidence 997653 455454 45799999964221 11112 2466788888885 34466776666554
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.02 E-value=5.7e-08 Score=100.15 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=134.8
Q ss_pred eecccccccCCCCCCCCcCCCCeEEEeeCCCEEEEEecCC--eEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEE
Q 037368 6 KFDFFEEKYGGKSTIPEEVSGNITCCSSGRGKVVIGCDDG--AVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTV 82 (823)
Q Consensus 6 ~f~ff~~~~~~~~~~~~~~~~~is~~~~~~~~l~~gs~dG--~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~ 82 (823)
.|.||+-++..+-.-....+..|-=+.++...+|+.+.+. .+++++ +....+- =-.+..+|.++.+. .+.|+.|
T Consensus 27 Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC-e~~fpt~IL~VrmN--r~RLvV~ 103 (391)
T KOG2110|consen 27 GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC-EIFFPTSILAVRMN--RKRLVVC 103 (391)
T ss_pred ceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE-EEecCCceEEEEEc--cceEEEE
Confidence 4566766554442101112222434446677776666544 377887 4444331 12245789999994 4678878
Q ss_pred ecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE--EeCCeEEEE
Q 037368 83 GEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG--LDNGCIYCI 160 (823)
Q Consensus 83 s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G--~~dG~V~l~ 160 (823)
=++. |-|||+... ..++++.... +.| ..+.++++++++.+ +|.= ...|.|++|
T Consensus 104 Lee~----------IyIydI~~M----------klLhTI~t~~-~n~-~gl~AlS~n~~n~y---lAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 104 LEES----------IYIYDIKDM----------KLLHTIETTP-PNP-KGLCALSPNNANCY---LAYPGSTTSGDVVLF 158 (391)
T ss_pred Eccc----------EEEEecccc----------eeehhhhccC-CCc-cceEeeccCCCCce---EEecCCCCCceEEEE
Confidence 7765 999999854 2566665331 122 23677777776666 6643 347999999
Q ss_pred EcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCe--EEEEEecCCCCcceEEcc-C-CCccceecccCCCe
Q 037368 161 KGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNS--VILFSLQNQPPKRQFLDN-I-GCSTNSVAMSDRLE 236 (823)
Q Consensus 161 ~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~--V~~~d~~~~~~~~~~l~~-~-~~~~~~~~~s~~~~ 236 (823)
+..- ......+..++++|-.|+|+++| ..|+.+++.+ |++|.+...+ ....|.. . -+.+.+++|+|+++
T Consensus 159 d~~n----l~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 159 DTIN----LQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred Eccc----ceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCcc-EeeeeeCCceeeEEEEEEECCCCC
Confidence 8741 11123355679999999999999 6888888865 8999997543 3444432 1 13456789999999
Q ss_pred EEEeeC--CeEEEEecCC
Q 037368 237 LIIGRP--EAVYFYEVDG 252 (823)
Q Consensus 237 liv~~~--~~I~i~~~~g 252 (823)
++++.+ ++|.++.++.
T Consensus 232 ~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEecCCCeEEEEEecc
Confidence 886544 6999998763
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=2.2e-08 Score=100.79 Aligned_cols=195 Identities=13% Similarity=0.181 Sum_probs=123.1
Q ss_pred eeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcc
Q 037368 67 VLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPIL 146 (823)
Q Consensus 67 V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~ 146 (823)
-+|+.|++-|.+||.|..||. |-|||+.+.. .-+++. .+.+| |+|++||+||+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~---------vvI~D~~T~~----------iar~ls--aH~~p---i~sl~WS~dgr~-- 79 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGR---------VVIYDFDTFR----------IARMLS--AHVRP---ITSLCWSRDGRK-- 79 (405)
T ss_pred cceEEeccCcceeeeeccCCc---------EEEEEccccc----------hhhhhh--ccccc---eeEEEecCCCCE--
Confidence 789999999999999999998 9999998542 222333 23578 999999999999
Q ss_pred eEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCcc
Q 037368 147 LIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCST 226 (823)
Q Consensus 147 ~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~ 226 (823)
+.+.+.|..|.+|+.- ....-.++.+ +.||++..|.|......+++--+..-++.++.. +++
T Consensus 80 -LltsS~D~si~lwDl~---~gs~l~rirf--~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~---~~h--------- 141 (405)
T KOG1273|consen 80 -LLTSSRDWSIKLWDLL---KGSPLKRIRF--DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD---PKH--------- 141 (405)
T ss_pred -eeeecCCceeEEEecc---CCCceeEEEc--cCccceeeeccccCCeEEEEEecCCcEEEEecC---Cce---------
Confidence 9999999999999852 1112223334 789999999987631222222222222222221 001
Q ss_pred ceecccCCCeEEEeeCCeEEEEecCCCCccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEecccc--
Q 037368 227 NSVAMSDRLELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVK-- 304 (823)
Q Consensus 227 ~~~~~s~~~~liv~~~~~I~i~~~~g~~~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~-- 304 (823)
.++..+++|.+=.+-+-. +++ ..|.|+++++. .|.+.++|..+..+..+..+.
T Consensus 142 ~~Lp~d~d~dln~sas~~--~fd------------------r~g~yIitGts-----KGkllv~~a~t~e~vas~rits~ 196 (405)
T KOG1273|consen 142 SVLPKDDDGDLNSSASHG--VFD------------------RRGKYIITGTS-----KGKLLVYDAETLECVASFRITSV 196 (405)
T ss_pred eeccCCCccccccccccc--ccc------------------CCCCEEEEecC-----cceEEEEecchheeeeeeeechh
Confidence 122333444321110000 111 12468888874 478999998876655544433
Q ss_pred -ceeEE-EeecCcEEEEEcCCeEEEEee
Q 037368 305 -EVSHM-LCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 305 -~v~~v-~~~~~~~~vvs~~~~v~~l~~ 330 (823)
+++++ ++..|..+++.+.+.|+|.-+
T Consensus 197 ~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 197 QAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred eeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 36665 677788888887787877653
No 182
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.02 E-value=4.9e-09 Score=115.28 Aligned_cols=210 Identities=11% Similarity=0.186 Sum_probs=143.4
Q ss_pred cCCCCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec---CCCEEEEEecCCCCccccccee
Q 037368 23 EVSGNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK---QRNFLVTVGEDEQVSAQQSAVC 96 (823)
Q Consensus 23 ~~~~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~---~~~~l~s~s~D~~~~~~~~~~~ 96 (823)
.+...+-|++.++ .+|++|+.-|++++|+ .+.+.+....||...|.|+.++- ..++|||+|.|.-
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl--------- 527 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL--------- 527 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce---------
Confidence 3455677777653 5899999999999999 66676667889999999999974 4578999999997
Q ss_pred EEEEeCCCCC-C------CCC-C-------CC-CCceEE-------EEEecc-----CCCC-------CCceEEEEEecC
Q 037368 97 LKVFDLDKME-P------EGT-S-------ST-SPDCIG-------ILRVFT-----SQFP-------EAKITSFLVLEE 141 (823)
Q Consensus 97 vkvWdl~~~~-~------~~~-~-------~~-~~~~~~-------~~~~~~-----~~~p-------~~~v~~va~~~d 141 (823)
|.|+|..+.- . .++ . ++ +.+.+. -++.+. ..+| -..+..++++|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 9999987531 0 000 0 00 000000 011110 0011 023788999999
Q ss_pred CCCcceEEEEEeCCeEEEEEcccccccccceeEEe-c---CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcce
Q 037368 142 APPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-D---NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQ 217 (823)
Q Consensus 142 ~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~---~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~ 217 (823)
... +++|+.|.+|++|+.. ..|+...+ . +++..-.+...|.|. ++...+++.++.+||.... .+..
T Consensus 608 ~k~---v~t~cQDrnirif~i~-----sgKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sg-EcvA 677 (1080)
T KOG1408|consen 608 SKL---VVTVCQDRNIRIFDIE-----SGKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSG-ECVA 677 (1080)
T ss_pred cce---EEEEecccceEEEecc-----ccceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccc-hhhh
Confidence 999 9999999999999863 23443333 2 246666777788873 3444445677999998754 3555
Q ss_pred EEccCCCccceecccCCCe-EE-EeeCCeEEEEecC
Q 037368 218 FLDNIGCSTNSVAMSDRLE-LI-IGRPEAVYFYEVD 251 (823)
Q Consensus 218 ~l~~~~~~~~~~~~s~~~~-li-v~~~~~I~i~~~~ 251 (823)
.+.+|+..++-+-|++|=+ ++ +++|++|.+|.+-
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 5668999999999998876 44 4567799999853
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.01 E-value=8e-09 Score=106.88 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=122.3
Q ss_pred EEee-CCCEEEEEecCCeEEEEc-CCC-------eeeEeEeecccceeEEEEecC-CCEEEEEecCCCCcccccceeEEE
Q 037368 30 CCSS-GRGKVVIGCDDGAVSLLD-RGL-------KFNFGFQAHSSSVLFLQQLKQ-RNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 30 ~~~~-~~~~l~~gs~dG~i~~~d-~~~-------~~~~~~~~H~~~V~~i~~~~~-~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
.++. ++..||+||.|-+|.+|. +++ +++..+.+|+..|..|.++|. .+.|+|+|.|.+ |++
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~---------v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT---------VSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce---------EEE
Confidence 3444 456889999999999998 432 346688999999999999994 488999999998 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe---
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV--- 176 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~--- 176 (823)
||+.+.+ .+-++. +| .-|.++.|+-||+. +++++.|.+|++|+.. ++ .++.
T Consensus 159 Wnv~tge----------ali~l~-----hp-d~i~S~sfn~dGs~---l~TtckDKkvRv~dpr----~~---~~v~e~~ 212 (472)
T KOG0303|consen 159 WNVGTGE----------ALITLD-----HP-DMVYSMSFNRDGSL---LCTTCKDKKVRVIDPR----RG---TVVSEGV 212 (472)
T ss_pred EeccCCc----------eeeecC-----CC-CeEEEEEeccCCce---eeeecccceeEEEcCC----CC---cEeeecc
Confidence 9998543 222333 34 44999999999999 9999999999999852 11 1122
Q ss_pred --cCCCCcceEEEeecCCeEEEEEEc-----CCeEEEEEecCCCCc--ceEEccCCCccceecccCCCeE--EEeeC-Ce
Q 037368 177 --DNQCSVMGLGFRVDGQALQLFAVT-----PNSVILFSLQNQPPK--RQFLDNIGCSTNSVAMSDRLEL--IIGRP-EA 244 (823)
Q Consensus 177 --~~~~~It~l~fs~dg~~~~l~~~t-----~~~V~~~d~~~~~~~--~~~l~~~~~~~~~~~~s~~~~l--iv~~~-~~ 244 (823)
++..+.. .-|-.+| . ++++. +.++-+||...-..+ .+.++. +..+----+.||..+ ++|.+ +.
T Consensus 213 ~heG~k~~R-aifl~~g--~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 213 AHEGAKPAR-AIFLASG--K-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred cccCCCcce-eEEeccC--c-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc
Confidence 2222333 3355555 2 44442 235889987654333 233442 222222234555553 45644 58
Q ss_pred EEEEecCCC
Q 037368 245 VYFYEVDGR 253 (823)
Q Consensus 245 I~i~~~~g~ 253 (823)
|+.|.+...
T Consensus 288 IRYyEit~d 296 (472)
T KOG0303|consen 288 IRYFEITNE 296 (472)
T ss_pred eEEEEecCC
Confidence 999987643
No 184
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.00 E-value=6.2e-09 Score=114.61 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=114.3
Q ss_pred CcC-CCCeEEEeeC--CCEEEEEecCC-----eEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccc
Q 037368 22 EEV-SGNITCCSSG--RGKVVIGCDDG-----AVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQ 92 (823)
Q Consensus 22 ~~~-~~~is~~~~~--~~~l~~gs~dG-----~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~ 92 (823)
+++ +-.|.|++.+ .+.+|++.... .|++|+ .+......+.+|+-.|++|.|+|+|.+|+|+|.|.+
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt----- 595 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT----- 595 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-----
Confidence 455 3348888876 35677775443 489999 666777789999999999999999999999999998
Q ss_pred cceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce
Q 037368 93 SAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF 172 (823)
Q Consensus 93 ~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~ 172 (823)
+.+|........ ..+..| ++.| ++- |++..|+|+..+ +|+++.|.+|++|...-.++...+.
T Consensus 596 ----~sl~~~~~~~~~---e~~fa~---~k~H--tRI---IWdcsW~pde~~---FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 596 ----VSLYEVQEDIKD---EFRFAC---LKAH--TRI---IWDCSWSPDEKY---FATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred ----EEeeeeecccch---hhhhcc---cccc--ceE---EEEcccCcccce---eEEecCCceEEEEeccCchhhhhhh
Confidence 999987542210 000001 1211 223 999999999999 9999999999999753111111111
Q ss_pred eEEecCCCCcceEEEeecC---CeEEEEEEcCC-eEEEEEec
Q 037368 173 KLQVDNQCSVMGLGFRVDG---QALQLFAVTPN-SVILFSLQ 210 (823)
Q Consensus 173 ~~~~~~~~~It~l~fs~dg---~~~~l~~~t~~-~V~~~d~~ 210 (823)
-.......+||.++|.+-. +...++++... .|.+|...
T Consensus 658 ~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 0122347899999997642 22467777765 59999854
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.00 E-value=8.9e-09 Score=112.35 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=133.3
Q ss_pred ceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCc
Q 037368 66 SVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPI 145 (823)
Q Consensus 66 ~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~ 145 (823)
.|..++|-|||..|+-+..|. +-|+|.... + .+++++.|+ -. |.|||++.||..
T Consensus 14 ci~d~afkPDGsqL~lAAg~r----------lliyD~ndG--------~--llqtLKgHK--Dt---VycVAys~dGkr- 67 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR----------LLVYDTSDG--------T--LLQPLKGHK--DT---VYCVAYAKDGKR- 67 (1081)
T ss_pred chheeEECCCCceEEEecCCE----------EEEEeCCCc--------c--ccccccccc--ce---EEEEEEccCCce-
Confidence 799999999999988777775 889998742 2 466777553 22 999999999999
Q ss_pred ceEEEEEeCCeEEEEEcccccccccceeEEecCC---------------------------------------CCcceEE
Q 037368 146 LLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQ---------------------------------------CSVMGLG 186 (823)
Q Consensus 146 ~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~---------------------------------------~~It~l~ 186 (823)
+|+|++|..|++|...+ + | ...+.+. ..|.+.+
T Consensus 68 --FASG~aDK~VI~W~~kl--E-G---~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 68 --FASGSADKSVIIWTSKL--E-G---ILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCS 139 (1081)
T ss_pred --eccCCCceeEEEecccc--c-c---eeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEee
Confidence 99999999999997532 0 0 0011222 3455556
Q ss_pred EeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEcc---CCCccceecccCC------CeEEE-eeCCeEEEEecCCCC-
Q 037368 187 FRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDN---IGCSTNSVAMSDR------LELII-GRPEAVYFYEVDGRG- 254 (823)
Q Consensus 187 fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~---~~~~~~~~~~s~~------~~liv-~~~~~I~i~~~~g~~- 254 (823)
|..||+ +++.+- +++|.+=+-. +.++..++. ..+++.+++|+|. ..++| -|+.++.+|..+|+-
T Consensus 140 WtnDGq--ylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 140 WTNDGQ--YLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred ecCCCc--EEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 666662 333333 3334333221 223344443 3356677777762 12333 477788888877652
Q ss_pred ---ccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc-eeEE-EeecCcEEEE-EcCCeEEE
Q 037368 255 ---PCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE-VSHM-LCEWGNIILV-MTDKSVLC 327 (823)
Q Consensus 255 ---~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~-v~~v-~~~~~~~~vv-s~~~~v~~ 327 (823)
..+.|+-+..+....|.|++++.. ++.+.++.-++-.++--+.+.. ++.+ ..+.++.+++ +-||.+.+
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGs-----dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGS-----DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccC-----CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 223444333344446889988864 4788888777655544333333 3333 4455666666 44564443
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=7.1e-06 Score=90.95 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=79.2
Q ss_pred HHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhc
Q 037368 433 LLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISS 512 (823)
Q Consensus 433 Ll~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~ 512 (823)
++.||..+.+.+.|+.+..+-+ +.+-=++..-+++.+-|+-++|..-.-+.++...++.--.+- .+|.+|++.-++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp---e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~L-nQW~~avelaq~ 903 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP---EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVEL-NQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC---cccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHH-HHHHHHHHHHHh
Confidence 4556666666677777776654 212224555677888899999999999999999998877765 899999999999
Q ss_pred CChHHHHHHHHHHHHHHHhcC-CHHHHH
Q 037368 513 LDPSQAGVTVKEYGKILIEHK-PMETID 539 (823)
Q Consensus 513 l~~~~~~~~i~k~~~~Ll~~~-p~~~~~ 539 (823)
...+++-.+|-||+..||+.. -.++++
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe 931 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIE 931 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHH
Confidence 999999999999998888664 345544
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=8.2e-08 Score=108.61 Aligned_cols=218 Identities=11% Similarity=0.043 Sum_probs=128.2
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF 124 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~ 124 (823)
..|.++|.+|...+.+..|...|.+.+|+|+|+.|+.++.++. .+. |.+||+.+. . .. .+.
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~--~~~----I~~~dl~~g--------~--~~-~l~-- 236 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESK--KPV----VYVHDLATG--------R--RR-VVA-- 236 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCC--CcE----EEEEECCCC--------C--EE-Eee--
Confidence 4678888777665677788889999999999999998876532 122 999999743 2 21 121
Q ss_pred cCCCCCCceEEEEEecCCCCcceEEE-EEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-C
Q 037368 125 TSQFPEAKITSFLVLEEAPPILLIAI-GLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-N 202 (823)
Q Consensus 125 ~~~~p~~~v~~va~~~d~~~~~~ia~-G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~ 202 (823)
..+ +.+.+.+|+|||+. +|. ...+|...+|..++ .+...+.+..+.+.+++..|+|||+ .+++++.. +
T Consensus 237 --~~~-g~~~~~~~SPDG~~---la~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g 306 (427)
T PRK02889 237 --NFK-GSNSAPAWSPDGRT---LAVALSRDGNSQIYTVNA---DGSGLRRLTQSSGIDTEPFFSPDGR-SIYFTSDRGG 306 (427)
T ss_pred --cCC-CCccceEECCCCCE---EEEEEccCCCceEEEEEC---CCCCcEECCCCCCCCcCeEEcCCCC-EEEEEecCCC
Confidence 112 22678999999998 875 46688888886553 1222333443445567889999995 45555543 3
Q ss_pred eEEEE--EecCCCCcceEEccCCCccceecccCCCeEEE-ee-CC---eEEEEecCCCCccccccC---CeEEEEeeCcE
Q 037368 203 SVILF--SLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PE---AVYFYEVDGRGPCWAFEG---EKKLLGWFRGY 272 (823)
Q Consensus 203 ~V~~~--d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~---~I~i~~~~g~~~~~~~~g---~~~~i~~~~~y 272 (823)
...+| ++.+.. . ..+...+.......|||+|+.++ +. .+ .|++|+..+.......++ ..-.+++++.+
T Consensus 307 ~~~Iy~~~~~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~ 384 (427)
T PRK02889 307 APQIYRMPASGGA-A-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRY 384 (427)
T ss_pred CcEEEEEECCCCc-e-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCE
Confidence 34455 444322 2 22222222223457999998654 22 22 588999764322111111 11234556667
Q ss_pred EEEEEecCCCCccEEEEEeCCCC
Q 037368 273 LLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 273 lv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
|+..+.++ ....+.+.++.++
T Consensus 385 l~~~~~~~--g~~~l~~~~~~g~ 405 (427)
T PRK02889 385 ILYATQQG--GRSVLAAVSSDGR 405 (427)
T ss_pred EEEEEecC--CCEEEEEEECCCC
Confidence 77666432 2344566666543
No 188
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.97 E-value=1.1e-08 Score=107.79 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=124.7
Q ss_pred CEEEEEecCCeEEEEc-CC-CeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RG-LKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~-~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
..+++|++-|...+|| +. +....-+.-|...|.+|++.|-. .+|||||-|+| +||||+.+... +
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T---------~kIWD~R~l~~--K-- 358 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQT---------AKIWDLRQLRG--K-- 358 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcc---------eeeeehhhhcC--C--
Confidence 5788999999999999 43 44444677899999999999955 66899999999 99999987531 1
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccc-ccceeEEecC--CCCcc--eEEE
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARER-ITRFKLQVDN--QCSVM--GLGF 187 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~-~~k~~~~~~~--~~~It--~l~f 187 (823)
..| .+.++ .+..+ |.+..|||++.. +++.+.|..|++|++..+... .+...+.+.. .-.+| .-.|
T Consensus 359 ~sp-~lst~---~Hrrs---V~sAyFSPs~gt---l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W 428 (498)
T KOG4328|consen 359 ASP-FLSTL---PHRRS---VNSAYFSPSGGT---LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAW 428 (498)
T ss_pred CCc-ceecc---cccce---eeeeEEcCCCCc---eEeeccCCceEEeecccccccCCccceeeccCcccccccchhhee
Confidence 124 34443 23455 999999999988 999999999999998421111 1222222322 11222 3467
Q ss_pred eecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccce-ecccCCCe-EEEeeC--CeEEEEecCC
Q 037368 188 RVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNS-VAMSDRLE-LIIGRP--EAVYFYEVDG 252 (823)
Q Consensus 188 s~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~-~~~s~~~~-liv~~~--~~I~i~~~~g 252 (823)
.|+. .+++++. ...|-+||-.++.......+.....+.| ..|.|-+. +++|++ +.|++|..++
T Consensus 429 ~P~~--~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 429 DPDY--NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred CCCc--cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 8865 4555554 3568888876543111212222223444 36778555 666544 5678886553
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.6e-07 Score=91.60 Aligned_cols=234 Identities=15% Similarity=0.166 Sum_probs=147.1
Q ss_pred EEeeCCCEEEEEecCCeEEEEc-C---------CCe-eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 30 CCSSGRGKVVIGCDDGAVSLLD-R---------GLK-FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 30 ~~~~~~~~l~~gs~dG~i~~~d-~---------~~~-~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
+++.+..+++.|+.+|.|.+.. . .|+ .+-.++||.++|..+.|. ..+|+|||+ |. |+
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~---------V~ 84 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GL---------VY 84 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ce---------EE
Confidence 4455567899999999999886 1 122 355789999999999996 468999987 65 88
Q ss_pred EEeCCCCCCCCCCCCCCceEE-EEEec--cCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE
Q 037368 99 VFDLDKMEPEGTSSTSPDCIG-ILRVF--TSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ 175 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~-~~~~~--~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~ 175 (823)
=|--....+ +.+.....+ ....+ ....| +|+++-++|..+. +..+.+||.++-|+.. .+.-++.+
T Consensus 85 gw~W~E~~e---s~~~K~lwe~~~P~~~~~~evP--eINam~ldP~enS---i~~AgGD~~~y~~dlE----~G~i~r~~ 152 (325)
T KOG0649|consen 85 GWEWNEEEE---SLATKRLWEVKIPMQVDAVEVP--EINAMWLDPSENS---ILFAGGDGVIYQVDLE----DGRIQREY 152 (325)
T ss_pred Eeeehhhhh---hccchhhhhhcCccccCcccCC--ccceeEeccCCCc---EEEecCCeEEEEEEec----CCEEEEEE
Confidence 887654321 011100111 00111 00123 3999999987766 6666679999999863 34344556
Q ss_pred ecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc----------cCCCccceecccCCCeEEEeeCCeE
Q 037368 176 VDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD----------NIGCSTNSVAMSDRLELIIGRPEAV 245 (823)
Q Consensus 176 ~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~----------~~~~~~~~~~~s~~~~liv~~~~~I 245 (823)
..+.+-|.++.-+.... .++..+.++.+++||+.+.. ..++++ +-|..+.|++- ..+.++.|++..+
T Consensus 153 rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~-~edWlvCGgGp~l 229 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAV-NEDWLVCGGGPKL 229 (325)
T ss_pred cCCcceeeeeeecccCc-ceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeEEEec-cCceEEecCCCce
Confidence 67777888887743321 34544456679999997643 333332 12233334332 2345666666789
Q ss_pred EEEecCCCCcc--ccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 246 YFYEVDGRGPC--WAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 246 ~i~~~~g~~~~--~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
-+|........ +.++++...+.++.+.++++. +...|.-|.+.+-
T Consensus 230 slwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G-----~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGG-----EGNHVQSYTLNGV 276 (325)
T ss_pred eEEeccCCCceEEEecccceeEeeeecceEEEec-----cccceeeeeeccE
Confidence 99998754433 456777777888888877775 2356777766553
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.96 E-value=6.3e-07 Score=98.02 Aligned_cols=221 Identities=8% Similarity=0.057 Sum_probs=132.9
Q ss_pred EEEecCCeEEEEc-C-CCe--eeEeEeecccceeEEEEecCCCEEEEEec-CCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 39 VIGCDDGAVSLLD-R-GLK--FNFGFQAHSSSVLFLQQLKQRNFLVTVGE-DEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 39 ~~gs~dG~i~~~d-~-~~~--~~~~~~~H~~~V~~i~~~~~~~~l~s~s~-D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
++...+|.|++|+ . +++ .++++. +.+....+.++|++++|+.++. ++. |.+|+++.. +
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~---------i~~~~~~~~-------g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFR---------VLSYRIADD-------G 68 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCc---------EEEEEECCC-------C
Confidence 3346789999999 3 344 445554 3467888999999999876654 444 999998621 1
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEE-eCCeEEEEEccccccccc-ceeEEecCCCCcceEEEeecC
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGL-DNGCIYCIKGDIARERIT-RFKLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~-~dG~V~l~~~~~~~~~~~-k~~~~~~~~~~It~l~fs~dg 191 (823)
....+..+.. + ..+..++++|+++. +.++. .+|.|.+|+.+ .+... .......+.....+++|+|+|
T Consensus 69 ~l~~~~~~~~-----~-~~p~~i~~~~~g~~---l~v~~~~~~~v~v~~~~--~~g~~~~~~~~~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 69 ALTFAAESPL-----P-GSPTHISTDHQGRF---LFSASYNANCVSVSPLD--KDGIPVAPIQIIEGLEGCHSANIDPDN 137 (330)
T ss_pred ceEEeeeecC-----C-CCceEEEECCCCCE---EEEEEcCCCeEEEEEEC--CCCCCCCceeeccCCCcccEeEeCCCC
Confidence 2111222221 1 12578999999987 66554 58899999763 11100 111112233456788999998
Q ss_pred CeEEEEEEc--CCeEEEEEecCCCCcc----eEE-ccCCCccceecccCCCeEE-Eee--CCeEEEEecCCC-Ccc---c
Q 037368 192 QALQLFAVT--PNSVILFSLQNQPPKR----QFL-DNIGCSTNSVAMSDRLELI-IGR--PEAVYFYEVDGR-GPC---W 257 (823)
Q Consensus 192 ~~~~l~~~t--~~~V~~~d~~~~~~~~----~~l-~~~~~~~~~~~~s~~~~li-v~~--~~~I~i~~~~g~-~~~---~ 257 (823)
+ .+++++ ++.|.+|++...+... ... ...|..+..+.|+|+|+++ ++. ++.|.+|+++.. +.. .
T Consensus 138 ~--~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 138 R--TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred C--EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 4 566665 3569999997533211 111 1235556788999999865 443 579999998631 111 1
Q ss_pred cc-------cCC--e--EEEEeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 258 AF-------EGE--K--KLLGWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 258 ~~-------~g~--~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
.+ .+. . ..+.+.+.++.+... ..++|.+|++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~ 258 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDR----TASLISVFSVS 258 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecC----CCCeEEEEEEe
Confidence 11 111 1 224456677777632 35799999984
No 191
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2e-07 Score=105.89 Aligned_cols=220 Identities=13% Similarity=0.090 Sum_probs=131.8
Q ss_pred eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc
Q 037368 46 AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT 125 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~ 125 (823)
.|.+||.+|...+.+..|...|.+..|+|+|+.|+.++.++. . +. |.+||+.+. .. +.+..
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g-~-~~----i~~~dl~~g--------~~---~~l~~-- 243 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANG-R-PR----VYLLDLETG--------QR---ELVGN-- 243 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCC-C-CE----EEEEECCCC--------cE---EEeec--
Confidence 788999767666678888899999999999999998876432 1 22 999999742 21 12221
Q ss_pred CCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC--
Q 037368 126 SQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-- 202 (823)
Q Consensus 126 ~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-- 202 (823)
.+ +.+.+.+|+|||+. +|.. ..+|...+|..++ .+...+.+..+.+..++..|+|||+ .+++++..+
T Consensus 244 --~~-g~~~~~~~SPDG~~---la~~~~~~g~~~Iy~~d~---~~~~~~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~ 313 (435)
T PRK05137 244 --FP-GMTFAPRFSPDGRK---VVMSLSQGGNTDIYTMDL---RSGTTTRLTDSPAIDTSPSYSPDGS-QIVFESDRSGS 313 (435)
T ss_pred --CC-CcccCcEECCCCCE---EEEEEecCCCceEEEEEC---CCCceEEccCCCCccCceeEcCCCC-EEEEEECCCCC
Confidence 11 22778899999988 7654 4456544443332 1223333444455677899999995 455555432
Q ss_pred -eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-C---CeEEEEecCCCCccccccC-C--eEEEEeeCcEE
Q 037368 203 -SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-P---EAVYFYEVDGRGPCWAFEG-E--KKLLGWFRGYL 273 (823)
Q Consensus 203 -~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~---~~I~i~~~~g~~~~~~~~g-~--~~~i~~~~~yl 273 (823)
.|+++++.+.. . +.+...+.......|+|+|+.++ .. + ..|.+|+.++........+ . .-.+++++.+|
T Consensus 314 ~~Iy~~d~~g~~-~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i 391 (435)
T PRK05137 314 PQLYVMNADGSN-P-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVI 391 (435)
T ss_pred CeEEEEECCCCC-e-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEE
Confidence 48888876542 2 33322233344568999998654 22 2 2578888765432111111 1 12345567777
Q ss_pred EEEEecCCCC-ccEEEEEeCCCCE
Q 037368 274 LCVIADQRNS-KNIFNVYDLKNRL 296 (823)
Q Consensus 274 v~~s~d~~~~-~~~I~I~D~~~~~ 296 (823)
+..+.+.... ...|.++|+.++.
T Consensus 392 ~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 392 MFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEccCCCCCcceEEEEECCCCc
Confidence 7665432100 1467777876643
No 192
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.7e-07 Score=105.57 Aligned_cols=190 Identities=22% Similarity=0.377 Sum_probs=147.5
Q ss_pred HHHHHHhccHHHHHHHHHhcCCCHHHH-----HHHHHHHhhh--hccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhH
Q 037368 337 LDMLFKKNLYTVAINLVQSQQADAAAT-----AEVLRKYGDH--LYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRI 409 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~~~~~~~~-----~~I~~~y~d~--L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~ 409 (823)
...++..++|+.|+.+--... +.+-. ..++-++.+. +...-+.+.|++...+-...+.|+.|+..+.+. .
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk-~~~vf~lI~k~nL~d~i~~~Iv~Lmll~skka~~lLldn~d~ip~a~Vveql~~~--P 588 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ-DKDVFDLIKKHNLFDQIKDQIVLLMLLDSKKAIDLLLDNRDSISPSEVVEQLEDN--P 588 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc-ChHHHHHHHHHhhHHHHHHHHHHHHccchhhHHHHHhhccccCCHHHHHHHHhcC--h
Confidence 466677899999998754321 22212 2223344444 445667889999999988889999999999944 3
Q ss_pred HHHHHHHHHHHHcC--CCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhC
Q 037368 410 YNLTNYLEKLHEKG--FASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAG 487 (823)
Q Consensus 410 ~~L~~YL~~l~~~~--~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~ 487 (823)
+.|-.||-.+..+. ..+.-|.. ++..|+.. |..+|..|+++.. +|+++.|+++|.+.|+++|.++|.-+.|
T Consensus 589 ~~l~~YL~kl~~rd~~~~~~y~dk-~I~LYAEy-Drk~LLPFLr~s~-----~Y~lekA~eiC~q~~~~~E~VYlLgrmG 661 (846)
T KOG2066|consen 589 KLLYCYLHKLFKRDHFMGSEYHDK-QIELYAEY-DRKKLLPFLRKSQ-----NYNLEKALEICSQKNFYEELVYLLGRMG 661 (846)
T ss_pred HHHHHHHHHHhhcCccccchhhhH-HHHHHHHH-hHhhhhHHHHhcC-----CCCHHHHHHHHHhhCcHHHHHHHHHhhc
Confidence 47888888877655 33444443 34466665 5678999999875 7999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHH
Q 037368 488 KHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDI 540 (823)
Q Consensus 488 ~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~l 540 (823)
++..+|.+.+++.++.++|++|.+..+.++.++-+..|+ ...|+-+..+
T Consensus 662 n~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~----ldkPe~~~~l 710 (846)
T KOG2066|consen 662 NAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYS----LDKPEFIKAL 710 (846)
T ss_pred chHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHh----hcCcHHHHHH
Confidence 999999999999999999999999999999999888886 4557766665
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.94 E-value=4e-08 Score=97.93 Aligned_cols=211 Identities=15% Similarity=0.155 Sum_probs=134.2
Q ss_pred EEEEEe----cCCeEEEEc--CCCee--eEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 37 KVVIGC----DDGAVSLLD--RGLKF--NFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 37 ~l~~gs----~dG~i~~~d--~~~~~--~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
.+++|| .+..|++.+ .++.. -+.|..|.+.|..|+-+| +..+|+||-.|..+... -.+..||.+.....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~v--l~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGV--LTGAAIWQIPEPLG 105 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcc--eeeEEEEecccccC
Confidence 456776 457788776 43332 356788889999999998 55678888765432211 13488999975321
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc-eeEEe-----cCCCC
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR-FKLQV-----DNQCS 181 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k-~~~~~-----~~~~~ 181 (823)
++...+-.|+..+... .. ++|.||-|.|++.. +|+- .+..|.+|+.+- +++ ...+. ++...
T Consensus 106 -~S~~~tlE~v~~Ldte---av-g~i~cvew~Pns~k---lasm-~dn~i~l~~l~e----ss~~vaev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 106 -QSNSSTLECVASLDTE---AV-GKINCVEWEPNSDK---LASM-DDNNIVLWSLDE----SSKIVAEVLSSESAEMRHS 172 (370)
T ss_pred -ccccchhhHhhcCCHH---Hh-CceeeEEEcCCCCe---eEEe-ccCceEEEEccc----Ccchheeecccccccccce
Confidence 1111111233333211 11 35999999999887 7764 489999998642 222 22222 12345
Q ss_pred cceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe--EEEeeCC-eEEEEecCCC-Cccc
Q 037368 182 VMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE--LIIGRPE-AVYFYEVDGR-GPCW 257 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~--liv~~~~-~I~i~~~~g~-~~~~ 257 (823)
-++=+|+|-...+.+.+++++++..||+++......+-+.||-.+..+.|+|+.+ +++++|+ .|++||.+.. .+..
T Consensus 173 ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 173 FTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 6777888732225788888889999999864433344467888899999999887 3445554 8999998743 3345
Q ss_pred cccCC
Q 037368 258 AFEGE 262 (823)
Q Consensus 258 ~~~g~ 262 (823)
.+++|
T Consensus 253 el~~H 257 (370)
T KOG1007|consen 253 ELPGH 257 (370)
T ss_pred ccCCC
Confidence 66676
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.6e-08 Score=99.74 Aligned_cols=234 Identities=17% Similarity=0.203 Sum_probs=142.0
Q ss_pred EEEEEecCCeEEEEcCCCeeeEeEeec-ccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC--C
Q 037368 37 KVVIGCDDGAVSLLDRGLKFNFGFQAH-SSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS--S 112 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d~~~~~~~~~~~H-~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~--~ 112 (823)
.+++|+.|-.|++|+.+.+....++.- +..|++++|-|-+ .-|+.+...| |-||..+..-..+-. -
T Consensus 112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g----------IciW~~s~tln~~r~~~~ 181 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG----------ICIWSDSRTLNANRNIRM 181 (445)
T ss_pred hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce----------eEEEEcCccccccccccc
Confidence 458899999999999665655466654 4789999999955 4455444444 999998864321100 0
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecC
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg 191 (823)
++-.+.+.++. +...| |+++++.+||.. ++++ .++..|.+|+.+ .+.+..+..-+.+.++.|.|||||
T Consensus 182 ~s~~~~qvl~~-pgh~p---Vtsmqwn~dgt~---l~tAS~gsssi~iWdpd----tg~~~pL~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 182 MSTHHLQVLQD-PGHNP---VTSMQWNEDGTI---LVTASFGSSSIMIWDPD----TGQKIPLIPKGLGGFSLLKWSPDG 250 (445)
T ss_pred ccccchhheeC-CCCce---eeEEEEcCCCCE---EeecccCcceEEEEcCC----CCCcccccccCCCceeeEEEcCCC
Confidence 00011222221 11235 999999999988 6665 457789999986 466666654456779999999999
Q ss_pred CeEEEEEEcCC-eEEEEEecC-CCCcceEEccCCCccceecccCCCeEE-EeeCC--eEEEEecCCCCccc---------
Q 037368 192 QALQLFAVTPN-SVILFSLQN-QPPKRQFLDNIGCSTNSVAMSDRLELI-IGRPE--AVYFYEVDGRGPCW--------- 257 (823)
Q Consensus 192 ~~~~l~~~t~~-~V~~~d~~~-~~~~~~~l~~~~~~~~~~~~s~~~~li-v~~~~--~I~i~~~~g~~~~~--------- 257 (823)
..+|+++-+ .-++|.... .......+ ..| .+...+|+|.|.++ .+..+ .++-....++....
T Consensus 251 --d~lfaAt~davfrlw~e~q~wt~erw~l-gsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 251 --DVLFAATCDAVFRLWQENQSWTKERWIL-GSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred --CEEEEecccceeeeehhcccceecceec-cCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceee
Confidence 567777655 578996542 21112222 233 56677999999854 34333 34333222221100
Q ss_pred ----------------cccCCeEEEEe--eCcEEEEEEecCC---CCccEEEEEeCCCC
Q 037368 258 ----------------AFEGEKKLLGW--FRGYLLCVIADQR---NSKNIFNVYDLKNR 295 (823)
Q Consensus 258 ----------------~~~g~~~~i~~--~~~ylv~~s~d~~---~~~~~I~I~D~~~~ 295 (823)
-..|+...++| .|.|+++...... ...+.|.+||...-
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 01234556777 4789988865321 12456777776543
No 195
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.1e-07 Score=105.84 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=175.2
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEee--cccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQA--HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~--H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
.+|..+..+++++|+..|.|.+|++.+...+..+. -.+.+..+++++...++|.++..|. |.|+-+...
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~---------V~v~ql~~~ 108 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR---------VSVFQLNKE 108 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce---------EEeehhhcc
Confidence 48998999999999999999999977654444443 3455666666776666676766665 777777642
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccc-ccceeEEecCCCCcce
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARER-ITRFKLQVDNQCSVMG 184 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~-~~k~~~~~~~~~~It~ 184 (823)
. .|... -+.-++..++ ..|+|++|++|+.. +-+|-..|+|.+...+. +.. ..+.+.+..-.++|..
T Consensus 109 ~-------p~~~~-~~t~~d~~~~-~rVTal~Ws~~~~k---~ysGD~~Gkv~~~~L~s-~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 109 L-------PRDLD-YVTPCDKSHK-CRVTALEWSKNGMK---LYSGDSQGKVVLTELDS-RQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred C-------CCcce-eeccccccCC-ceEEEEEecccccE---EeecCCCceEEEEEech-hhhhccccceeeccCcceEE
Confidence 1 12111 1111222222 45999999999999 99999999999987653 111 1233334445778999
Q ss_pred EEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc--cCCC-ccceecccCC------CeEEEeeCCeEEEEecC--CC
Q 037368 185 LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD--NIGC-STNSVAMSDR------LELIIGRPEAVYFYEVD--GR 253 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~--~~~~-~~~~~~~s~~------~~liv~~~~~I~i~~~~--g~ 253 (823)
|.... ..|.++|-.+-.+++++... ..++-. ..+. ... .||-|. -+++.++- +.++|.++ |.
T Consensus 176 lD~~q----~~LLVStl~r~~Lc~tE~et-i~QIG~k~R~~~~~~G-ACF~~g~~~~q~~~IycaRP-G~RlWead~~G~ 248 (726)
T KOG3621|consen 176 LDYLQ----SYLLVSTLTRCILCQTEAET-ITQIGKKPRKSLIDFG-ACFFPGQCKAQKPQIYCARP-GLRLWEADFAGE 248 (726)
T ss_pred eeccc----ceehHhhhhhhheeecchhH-HHHhcCCCcCCccccc-eEEeeccccCCCceEEEecC-CCceEEeeccee
Confidence 88765 35666766666677765422 111110 1111 112 233332 22444543 45666543 32
Q ss_pred C-------------cc--ccc---cCC--------eE------EEEeeCcEEEEEEecCCCCccEEEEEeCCCC-EEEEe
Q 037368 254 G-------------PC--WAF---EGE--------KK------LLGWFRGYLLCVIADQRNSKNIFNVYDLKNR-LIAHS 300 (823)
Q Consensus 254 ~-------------~~--~~~---~g~--------~~------~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~-~i~~~ 300 (823)
- +. ..+ +.+ .+ ...-+++.+++.+. .| |.|+|.++. .+.++
T Consensus 249 V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te-----~G-iyv~d~~~~~v~l~s 322 (726)
T KOG3621|consen 249 VIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTE-----VG-IYVFDSNNSQVYLWS 322 (726)
T ss_pred EEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeec-----ce-EEEEEeccceEEEee
Confidence 0 00 001 100 11 11113344554442 23 888898875 45677
Q ss_pred ccccceeEEEeecCcEEEEEcCCeEEEEeecChHHHHHHHHHhccHHHHHHHH
Q 037368 301 LVVKEVSHMLCEWGNIILVMTDKSVLCIGEKDMESKLDMLFKKNLYTVAINLV 353 (823)
Q Consensus 301 ~~i~~v~~v~~~~~~~~vvs~~~~v~~l~~~~~~~~i~~L~~~~~f~~Al~la 353 (823)
....++..+-...+.+|++..++.+..+..-..+.++.-|+.++.+--++..+
T Consensus 323 e~~~DI~dVs~~~neiFvL~~d~~l~~~sv~s~qr~l~~l~~~G~~m~~~~~~ 375 (726)
T KOG3621|consen 323 EGGHDILDVSHCGNEIFVLNLDRGLKVESVASRQRKLESLCRCGKEMFVLLGR 375 (726)
T ss_pred cCCCceeEEeecCceEEEEecCCceeEEEeehhHHHHHHHHhhchhhhhhhcc
Confidence 66677777767778899999999777777778888999999998655444433
No 196
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.7e-07 Score=105.99 Aligned_cols=216 Identities=11% Similarity=0.090 Sum_probs=132.0
Q ss_pred eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc
Q 037368 46 AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT 125 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~ 125 (823)
.|.+||.+|...+.+..+...+...+|+|+|+.|+.++.++. . +. |.+|++... .+.. +..
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g-~-~~----i~i~dl~~G--------~~~~---l~~-- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESG-R-SA----LVIQTLANG--------AVRQ---VAS-- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCC-C-cE----EEEEECCCC--------CeEE---ccC--
Confidence 689999666544566667789999999999999988765331 1 12 889998742 2211 111
Q ss_pred CCCCCCceEEEEEecCCCCcceEEEE-EeCCe--EEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC
Q 037368 126 SQFPEAKITSFLVLEEAPPILLIAIG-LDNGC--IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN 202 (823)
Q Consensus 126 ~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~--V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~ 202 (823)
.+ ..+.+++|+|||+. +|.. ..+|. |.+|+.+ +.+.+.+..+...+++..|+|||+ .+++++..+
T Consensus 241 --~~-~~~~~~~~SPDG~~---La~~~~~~g~~~I~~~d~~-----tg~~~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~ 308 (429)
T PRK03629 241 --FP-RHNGAPAFSPDGSK---LAFALSKTGSLNLYVMDLA-----SGQIRQVTDGRSNNTEPTWFPDSQ-NLAYTSDQA 308 (429)
T ss_pred --CC-CCcCCeEECCCCCE---EEEEEcCCCCcEEEEEECC-----CCCEEEccCCCCCcCceEECCCCC-EEEEEeCCC
Confidence 11 11567899999998 8865 33554 6666642 223334444456788999999995 455655543
Q ss_pred ---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-C---CeEEEEecCCCCcc-cc--ccCCeEEEEeeCc
Q 037368 203 ---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-P---EAVYFYEVDGRGPC-WA--FEGEKKLLGWFRG 271 (823)
Q Consensus 203 ---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~---~~I~i~~~~g~~~~-~~--~~g~~~~i~~~~~ 271 (823)
.|+.+++.+.. ...+...+....+..|+|||+.++ +. . ..|++|+.++.... +. .....-.++++|.
T Consensus 309 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~ 386 (429)
T PRK03629 309 GRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGT 386 (429)
T ss_pred CCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCC
Confidence 35556665432 233333344445678999997553 22 2 25888887643221 11 1111234667788
Q ss_pred EEEEEEecCCCCccEEEEEeCCCCE
Q 037368 272 YLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 272 ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+++..+.++ ....+.+++++++.
T Consensus 387 ~i~~~s~~~--~~~~l~~~~~~G~~ 409 (429)
T PRK03629 387 MVIYSSSQG--MGSVLNLVSTDGRF 409 (429)
T ss_pred EEEEEEcCC--CceEEEEEECCCCC
Confidence 888877653 23468888887654
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=9.8e-08 Score=108.45 Aligned_cols=203 Identities=19% Similarity=0.248 Sum_probs=142.0
Q ss_pred EEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC---CEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR---NFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~---~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
-..++.+.+.+++.....|.+|. .+|.+++.+..|.++++.+.+.|.. .++.+|+.||+ |++||-..
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~---------I~vwd~~~ 91 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGT---------IRVWDWSD 91 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCcc---------EEEecCCC
Confidence 34445666677777788999999 7899999999999999999998854 46789999998 99999874
Q ss_pred CCC-------------------CC-------------------C---CCC--------------------CCceEE----
Q 037368 105 MEP-------------------EG-------------------T---SST--------------------SPDCIG---- 119 (823)
Q Consensus 105 ~~~-------------------~~-------------------~---~~~--------------------~~~~~~---- 119 (823)
... .. + +++ .|.++.
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 321 00 0 000 011110
Q ss_pred -------------EEEecc-------------CCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 120 -------------ILRVFT-------------SQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 120 -------------~~~~~~-------------~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
...... ++++ ++|+++||++++ +|+|-.||.|.+|+.--..+.....+
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~---~t~~~~spn~~~---~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN---ITCVALSPNERY---LAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhccc---ceeEEeccccce---EEEeccCCcEEEEeccccccccccce
Confidence 000000 1223 799999999999 99999999999997521111122234
Q ss_pred EEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEE--EeeCCeEEEEec
Q 037368 174 LQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI--IGRPEAVYFYEV 250 (823)
Q Consensus 174 ~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li--v~~~~~I~i~~~ 250 (823)
.++-+..+|++++|+++| ..|+.+... -..+|.+.++. ++.|+.-|+++..+.+|||+.+. +..|+.|.+...
T Consensus 246 ~lHWH~~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDG--AYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred EEEecccccceeEEecCC--ceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 455567899999999999 456666544 47899997653 57778889999988999988743 455778887653
No 198
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=98.91 E-value=5.9e-09 Score=92.53 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhc--------
Q 037368 430 TTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLG-------- 501 (823)
Q Consensus 430 ~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~-------- 501 (823)
+|.|++||... +.+.+..|++.++ .||++.+.++|+++|++.+++.|+..+|+|+++|++|.+-..
T Consensus 2 DTaLlk~Yl~~-~~~~l~~llr~~N-----~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~ 75 (108)
T PF10366_consen 2 DTALLKCYLET-NPSLLGPLLRLPN-----YCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEED 75 (108)
T ss_pred cHHHHHHHHHh-CHHHHHHHHccCC-----cCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhccccccccc
Confidence 47799999999 7789999999875 899999999999999999999999999999999999876433
Q ss_pred ----CHHHH-HHHHhcCChHHHHHHHHHHHHHHH
Q 037368 502 ----RYDEA-LQYISSLDPSQAGVTVKEYGKILI 530 (823)
Q Consensus 502 ----~~~~a-l~yl~~l~~~~~~~~i~k~~~~Ll 530 (823)
....+ ++|+++++.++ .++|.+|++|+|
T Consensus 76 ~~~~~~~~~iv~yL~~L~~~~-~dLI~~~s~WvL 108 (108)
T PF10366_consen 76 PFLSGVKETIVQYLQKLGNED-LDLIFEYSDWVL 108 (108)
T ss_pred ccccCchhHHHHHHHhCChhh-hHHHHHhccccC
Confidence 24455 99999999765 689999999975
No 199
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.91 E-value=2.6e-07 Score=102.08 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=128.6
Q ss_pred EEEEEecCCeEEEEc--CCC--------------------eeeEeE----------eecccceeEEEEecCCCEEEEEec
Q 037368 37 KVVIGCDDGAVSLLD--RGL--------------------KFNFGF----------QAHSSSVLFLQQLKQRNFLVTVGE 84 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d--~~~--------------------~~~~~~----------~~H~~~V~~i~~~~~~~~l~s~s~ 84 (823)
+|++||.|..|+||. ..+ .....+ .||+.-|.++.++|.+-.|+|+|.
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa 287 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA 287 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence 679999999999997 212 111122 289999999999999988999999
Q ss_pred CCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccc
Q 037368 85 DEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDI 164 (823)
Q Consensus 85 D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~ 164 (823)
|.+ +.+|..+.. +..=+.++++..-..........-|+|+++. |.+-+..|..++|..
T Consensus 288 Dks---------miiW~pd~~--------tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~---ii~~g~~Gg~hlWkt-- 345 (764)
T KOG1063|consen 288 DKS---------MIIWKPDEN--------TGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV---IIAHGRTGGFHLWKT-- 345 (764)
T ss_pred Ccc---------eEEEecCCc--------cceEEEEEEeecccccccceeeEEEcCCCCE---EEEecccCcEEEEec--
Confidence 998 999987642 2222334444321111123788899999987 777777999999972
Q ss_pred ccccc-cceeE-EecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEE---ccCCCccceecccC-CCeEE
Q 037368 165 ARERI-TRFKL-QVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL---DNIGCSTNSVAMSD-RLELI 238 (823)
Q Consensus 165 ~~~~~-~k~~~-~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l---~~~~~~~~~~~~s~-~~~li 238 (823)
.+.. +-+.. +-.+-..|+++.|+|.|. ++|.++.|.+-++|-.-+++..-+.+ .-||..+.|++|-+ +-+|+
T Consensus 346 -~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 346 -KDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred -cCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 1211 11111 223457899999999995 56666677777777655443222222 24899999999877 77888
Q ss_pred EeeCCe-EEEEe
Q 037368 239 IGRPEA-VYFYE 249 (823)
Q Consensus 239 v~~~~~-I~i~~ 249 (823)
.|.+.. +++|+
T Consensus 424 SgAdEKVlRvF~ 435 (764)
T KOG1063|consen 424 SGADEKVLRVFE 435 (764)
T ss_pred ecccceeeeeec
Confidence 887764 56775
No 200
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.91 E-value=6.9e-08 Score=97.70 Aligned_cols=227 Identities=13% Similarity=0.157 Sum_probs=145.2
Q ss_pred CCEEEEEecCCeEEEEc-C-C----C--ee-----eEeEeec-ccceeEEEEe-------cCCCEEEEEecCCCCccccc
Q 037368 35 RGKVVIGCDDGAVSLLD-R-G----L--KF-----NFGFQAH-SSSVLFLQQL-------KQRNFLVTVGEDEQVSAQQS 93 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~-~----~--~~-----~~~~~~H-~~~V~~i~~~-------~~~~~l~s~s~D~~~~~~~~ 93 (823)
+.-|++-++|..+++|+ + + . .. .-+++-- ...|..-++= |+.+++++.|.|..
T Consensus 61 GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P------ 134 (406)
T KOG2919|consen 61 GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP------ 134 (406)
T ss_pred CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc------
Confidence 34678889999999998 2 1 1 11 1122211 2345555553 67788999999986
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee
Q 037368 94 AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK 173 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~ 173 (823)
|++||..... .+| +.+..++.---....|++|+|||.+ |.+|. +.+|++++.. | .+....
T Consensus 135 ---Ih~wdaftG~--------lra--Sy~~ydh~de~taAhsL~Fs~DGeq---lfaGy-krcirvFdt~--R-pGr~c~ 194 (406)
T KOG2919|consen 135 ---IHLWDAFTGK--------LRA--SYRAYDHQDEYTAAHSLQFSPDGEQ---LFAGY-KRCIRVFDTS--R-PGRDCP 194 (406)
T ss_pred ---eeeeeccccc--------ccc--chhhhhhHHhhhhheeEEecCCCCe---Eeecc-cceEEEeecc--C-CCCCCc
Confidence 9999998542 112 2222111000023789999999999 99998 8899999752 1 121111
Q ss_pred ---EEe----cCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEe-e-C
Q 037368 174 ---LQV----DNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIG-R-P 242 (823)
Q Consensus 174 ---~~~----~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~-~-~ 242 (823)
++. ...+-|.+++|+|-.. ..+++++-+ ++-+|.-.++ .|..++-+|+..++-+.|-++|. |.+| + +
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCC
Confidence 111 1256678899999753 467777654 3555554443 47788878999999999998886 5554 3 4
Q ss_pred CeEEEEecCCC-CccccccCCe----EE----EEeeCcEEEEEEecCCCCccEEEEEeCCC
Q 037368 243 EAVYFYEVDGR-GPCWAFEGEK----KL----LGWFRGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 243 ~~I~i~~~~g~-~~~~~~~g~~----~~----i~~~~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
+.|-+||++-. .+.+++++|. +. +.+.+++|+.+. .++.|++||++.
T Consensus 273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-----tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-----TDGSVRVWDLKD 328 (406)
T ss_pred CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-----CCccEEEEecCC
Confidence 68999999743 3446666542 22 344577887775 458999999975
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.90 E-value=3.8e-08 Score=97.02 Aligned_cols=249 Identities=11% Similarity=0.118 Sum_probs=144.5
Q ss_pred CeEEEeeC-CCEEEEEecCCeEEEEc-CCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSG-RGKVVIGCDDGAVSLLD-RGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~-~~~l~~gs~dG~i~~~d-~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.++|.++. .++|..|+..|.|++|+ .+....-.|+ .|+..|+.+...|+ ..|.|-|.|.+ +.+|++.
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~---------L~lw~ia 85 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL---------LILWTIA 85 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce---------EEEEEcc
Confidence 46777775 57899999999999999 4444455788 56789999999986 66889999987 9999987
Q ss_pred CCCC--------------------CCCCC---------C--------CCceEEEEEecc-CCCC-CCceEEEEEecCCCC
Q 037368 104 KMEP--------------------EGTSS---------T--------SPDCIGILRVFT-SQFP-EAKITSFLVLEEAPP 144 (823)
Q Consensus 104 ~~~~--------------------~~~~~---------~--------~~~~~~~~~~~~-~~~p-~~~v~~va~~~d~~~ 144 (823)
-..- .++.. + .+..+ .+.+.+ ...+ .+.++|..+.-+-..
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeeccccccc
Confidence 4210 00000 0 00000 011111 0000 134777775443333
Q ss_pred cceEEEEEeCCeEEEEEcccc---ccc--cccee-EEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC---Cc
Q 037368 145 ILLIAIGLDNGCIYCIKGDIA---RER--ITRFK-LQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP---PK 215 (823)
Q Consensus 145 ~~~ia~G~~dG~V~l~~~~~~---~~~--~~k~~-~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~---~~ 215 (823)
++.+++|..+|.|.+|+...- -+. .+|.. -+..+++||+++.|.+.-. .-+..+.++.+..|++.... +.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccc
Confidence 355899999999999986420 000 01111 0124578999999975311 11222334567788876431 11
Q ss_pred ceEEccCCCccceecccCCCeEEE--eeCCeEEEEecCCCCcccccc---CCeEEEEeeCc--EEEEEEecCCCCccEEE
Q 037368 216 RQFLDNIGCSTNSVAMSDRLELII--GRPEAVYFYEVDGRGPCWAFE---GEKKLLGWFRG--YLLCVIADQRNSKNIFN 288 (823)
Q Consensus 216 ~~~l~~~~~~~~~~~~s~~~~liv--~~~~~I~i~~~~g~~~~~~~~---g~~~~i~~~~~--ylv~~s~d~~~~~~~I~ 288 (823)
...+.-....+.-+.+-||+++++ |||+.|++|+-+.-.+...+. +....+++..+ .+++++ .|++|.
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas-----kD~rIS 318 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS-----KDARIS 318 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-----CCceEE
Confidence 112222233445567779999653 789999998766333322222 22344555443 344444 578999
Q ss_pred EEeC
Q 037368 289 VYDL 292 (823)
Q Consensus 289 I~D~ 292 (823)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 202
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.89 E-value=5.8e-08 Score=96.89 Aligned_cols=209 Identities=12% Similarity=0.209 Sum_probs=139.1
Q ss_pred EEecCCeEEEEcCC---Ce--eeEeE-----eecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCC
Q 037368 40 IGCDDGAVSLLDRG---LK--FNFGF-----QAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE 108 (823)
Q Consensus 40 ~gs~dG~i~~~d~~---~~--~~~~~-----~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~ 108 (823)
.+|.+-.+++|.-. .+ +...+ ..|.+++++..|.. +-+++.|+|-|.| ..|||+....
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT---------CTiWdie~~~-- 184 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT---------CTIWDIETGV-- 184 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe---------EEEEEEeecc--
Confidence 44556679999822 22 11111 23668999999875 6689999999998 9999998531
Q ss_pred CCCCCCCceEEE-EEeccCCCCCCceEEEEEecCCC-CcceEEEEEeCCeEEEEEcccccccccceeEEecC---CCCcc
Q 037368 109 GTSSTSPDCIGI-LRVFTSQFPEAKITSFLVLEEAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN---QCSVM 183 (823)
Q Consensus 109 ~~~~~~~~~~~~-~~~~~~~~p~~~v~~va~~~d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~---~~~It 183 (823)
.|+ ++| +-.| . .+|..|+|..++. . +|+.++||+|++|+. |... ...+++|. ..|..
T Consensus 185 ---~~~---vkTQLIAH--D---KEV~DIaf~~~s~~~---FASvgaDGSvRmFDL---R~le-HSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 185 ---SGT---VKTQLIAH--D---KEVYDIAFLKGSRDV---FASVGADGSVRMFDL---RSLE-HSTIIYEDPSPSTPLL 246 (364)
T ss_pred ---ccc---eeeEEEec--C---cceeEEEeccCccce---EEEecCCCcEEEEEe---cccc-cceEEecCCCCCCcce
Confidence 111 222 1122 2 3399999998653 5 899999999999985 3322 34556765 34677
Q ss_pred eEEEeecCCeEEE--EEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCC--eEEEeeCC-eEEEEecCCC-----
Q 037368 184 GLGFRVDGQALQL--FAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL--ELIIGRPE-AVYFYEVDGR----- 253 (823)
Q Consensus 184 ~l~fs~dg~~~~l--~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~--~liv~~~~-~I~i~~~~g~----- 253 (823)
.|+|+.... +.+ +....++|.+.|++.-..+...|.+|+..++.++|.|.. .+.+++|| .+-+|++..-
T Consensus 247 RLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 247 RLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 778876542 223 222345799999986555777788999999999999854 36667777 5678997522
Q ss_pred -Ccc--ccccCCeEEEEee---CcEEEEEEe
Q 037368 254 -GPC--WAFEGEKKLLGWF---RGYLLCVIA 278 (823)
Q Consensus 254 -~~~--~~~~g~~~~i~~~---~~ylv~~s~ 278 (823)
.+. ++.+++...+.|. ++++.+++.
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 122 3445666777774 568877764
No 203
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.1e-07 Score=101.10 Aligned_cols=238 Identities=14% Similarity=0.176 Sum_probs=140.0
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCE-EEEEecCCC--Ccccc---------
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNF-LVTVGEDEQ--VSAQQ--------- 92 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~-l~s~s~D~~--~~~~~--------- 92 (823)
|.|+... +..|++|+.||+|++|. .+|.+++++. ..+.|.||+|.|.++. ++.++.++. -.||.
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~ 481 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGP 481 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcc
Confidence 6777754 45899999999999999 9999998877 4568999999997653 333333332 00110
Q ss_pred -----------c--ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeC---Ce
Q 037368 93 -----------S--AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDN---GC 156 (823)
Q Consensus 93 -----------~--~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~d---G~ 156 (823)
+ ...+..|.-...++ .. ...|+ +++. . ..|+.+.||.+|.+ +|+...+ ..
T Consensus 482 t~ell~~~~~~~~p~~~~~~W~~~~~~e---~~-~~v~~-~I~~---~---k~i~~vtWHrkGDY---latV~~~~~~~~ 547 (733)
T KOG0650|consen 482 TKELLASAPNESEPDAAVVTWSRASLDE---LE-KGVCI-VIKH---P---KSIRQVTWHRKGDY---LATVMPDSGNKS 547 (733)
T ss_pred hhhhhhcCCCccCCcccceeechhhhhh---hc-cceEE-EEec---C---CccceeeeecCCce---EEEeccCCCcce
Confidence 0 00011222111100 00 00121 2221 1 23999999999999 7776654 35
Q ss_pred EEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe
Q 037368 157 IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE 236 (823)
Q Consensus 157 V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~ 236 (823)
|.+++.. +.+ .+.-+.-..+.|..+.|.|.. ..++++|...|++||+... ...+.+......+..+++.|.|.
T Consensus 548 VliHQLS--K~~--sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq~~vRiYdL~kq-elvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 548 VLIHQLS--KRK--SQSPFRKSKGLVQRVKFHPSK--PYLFVATQRSVRIYDLSKQ-ELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred EEEEecc--ccc--ccCchhhcCCceeEEEecCCC--ceEEEEeccceEEEehhHH-HHHHHHhcCCeeeeeeeecCCCC
Confidence 7777642 111 111122346889999999976 5899999999999999753 22222222223456677888665
Q ss_pred -EEEeeC-CeEEEEecCCCC-ccccccCC---eEEEEeeCcEEEEEEecCCCCccEEEEE
Q 037368 237 -LIIGRP-EAVYFYEVDGRG-PCWAFEGE---KKLLGWFRGYLLCVIADQRNSKNIFNVY 290 (823)
Q Consensus 237 -liv~~~-~~I~i~~~~g~~-~~~~~~g~---~~~i~~~~~ylv~~s~d~~~~~~~I~I~ 290 (823)
+++|+- +.+..+|.+-.. +-..+.-| ...+++++.|=+.++.. .|+++.|+
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s---dDgtv~Vf 677 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS---DDGTVIVF 677 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec---CCCcEEEE
Confidence 556554 455556765222 21233333 34577777775444432 46788887
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.89 E-value=5.4e-07 Score=98.54 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=135.5
Q ss_pred CeEEEeeC--CCEEEEEe-cCCeEEEEc-C-CCee--eEeEeecccceeEEEEecCCCEEEEEec-CCCCcccccceeEE
Q 037368 27 NITCCSSG--RGKVVIGC-DDGAVSLLD-R-GLKF--NFGFQAHSSSVLFLQQLKQRNFLVTVGE-DEQVSAQQSAVCLK 98 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs-~dG~i~~~d-~-~~~~--~~~~~~H~~~V~~i~~~~~~~~l~s~s~-D~~~~~~~~~~~vk 98 (823)
..+.++.+ .++|++|+ .++.|.+|+ . ++.+ +.+. .+.+....|.++|+|++|++++. ++. |.
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~---------v~ 105 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANC---------VS 105 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCe---------EE
Confidence 34444433 35676554 578899998 3 3443 2221 23456789999999999988876 444 99
Q ss_pred EEeCCCCCCCCCCCCCC-ceEEEEEeccCCCCCCceEEEEEecCCCCcceE-EEEEeCCeEEEEEcccccccccc----e
Q 037368 99 VFDLDKMEPEGTSSTSP-DCIGILRVFTSQFPEAKITSFLVLEEAPPILLI-AIGLDNGCIYCIKGDIARERITR----F 172 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~i-a~G~~dG~V~l~~~~~~~~~~~k----~ 172 (823)
+|+++... .. ..+..+. . ..+ +.+++++|+++. + ++...++.|.+|+.+- ..... .
T Consensus 106 v~~~~~~g-------~~~~~~~~~~--~-~~~---~~~~~~~p~g~~---l~v~~~~~~~v~v~d~~~--~g~l~~~~~~ 167 (330)
T PRK11028 106 VSPLDKDG-------IPVAPIQIIE--G-LEG---CHSANIDPDNRT---LWVPCLKEDRIRLFTLSD--DGHLVAQEPA 167 (330)
T ss_pred EEEECCCC-------CCCCceeecc--C-CCc---ccEeEeCCCCCE---EEEeeCCCCEEEEEEECC--CCcccccCCC
Confidence 99997321 11 1222221 1 112 688999999977 6 5666679999998641 00000 0
Q ss_pred eEEecCCCCcceEEEeecCCeEEEEEEcC--CeEEEEEecCC-CCc--ceEEccC-----C-CccceecccCCCeEE-Ee
Q 037368 173 KLQVDNQCSVMGLGFRVDGQALQLFAVTP--NSVILFSLQNQ-PPK--RQFLDNI-----G-CSTNSVAMSDRLELI-IG 240 (823)
Q Consensus 173 ~~~~~~~~~It~l~fs~dg~~~~l~~~t~--~~V~~~d~~~~-~~~--~~~l~~~-----~-~~~~~~~~s~~~~li-v~ 240 (823)
..-.........+.|+|+| ..+++++. +.|.+|+++.. +.. ...+... + .....+.++|+|+++ ++
T Consensus 168 ~~~~~~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred ceecCCCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 0011122345789999999 46777764 67999999742 111 1222111 0 111246788999855 44
Q ss_pred -e-CCeEEEEecCCCCcccccc-----C-Ce--EEEEeeCcEEEEEEecCCCCccEEEEEeCC
Q 037368 241 -R-PEAVYFYEVDGRGPCWAFE-----G-EK--KLLGWFRGYLLCVIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 241 -~-~~~I~i~~~~g~~~~~~~~-----g-~~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~ 293 (823)
+ ++.|.+|+++..+....+. | .+ ..+.+.+.+|++... .+++|.||+++
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~----~~~~v~v~~~~ 304 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ----KSHHISVYEID 304 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc----cCCcEEEEEEc
Confidence 2 3689999885333211111 1 12 245556888887753 35799999764
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.86 E-value=6.1e-08 Score=98.14 Aligned_cols=200 Identities=18% Similarity=0.167 Sum_probs=132.4
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEcC---C-CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLDR---G-LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d~---~-~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
...|+|.+.+. ..++++..+..|+||.. + .+..++++-|.+.|+.|++.|..+.++|||.|.. -.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn---------ay 80 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN---------AY 80 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC---------cc
Confidence 45799999864 57899999999999982 2 5678899999999999999999999999999997 88
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccc-ceeEE-e
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERIT-RFKLQ-V 176 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~-k~~~~-~ 176 (823)
||...... .=.|. +-.+++. +. +++|.|+|..+. +|+|++...|-++.-. .+..+ -.+.+ .
T Consensus 81 Vw~~~~~~-----~Wkpt-lvLlRiN---rA---At~V~WsP~enk---FAVgSgar~isVcy~E--~ENdWWVsKhikk 143 (361)
T KOG1523|consen 81 VWTQPSGG-----TWKPT-LVLLRIN---RA---ATCVKWSPKENK---FAVGSGARLISVCYYE--QENDWWVSKHIKK 143 (361)
T ss_pred ccccCCCC-----eeccc-eeEEEec---cc---eeeEeecCcCce---EEeccCccEEEEEEEe--cccceehhhhhCC
Confidence 99883211 11232 2233433 22 899999999999 9999988888886421 01111 00011 1
Q ss_pred cCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEe-----cCCCCc------------ceEEccCCCccceecccCCCe-E
Q 037368 177 DNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSL-----QNQPPK------------RQFLDNIGCSTNSVAMSDRLE-L 237 (823)
Q Consensus 177 ~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~-----~~~~~~------------~~~l~~~~~~~~~~~~s~~~~-l 237 (823)
.....|++++|.|++ .+|++++ |.+.++|.. +.+..+ ...++..|..+..+.|+|+|. +
T Consensus 144 PirStv~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~l 221 (361)
T KOG1523|consen 144 PIRSTVTSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRL 221 (361)
T ss_pred ccccceeeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEe
Confidence 235679999999987 5555554 556777764 222110 000112345566677887775 4
Q ss_pred E-EeeCCeEEEEecCC
Q 037368 238 I-IGRPEAVYFYEVDG 252 (823)
Q Consensus 238 i-v~~~~~I~i~~~~g 252 (823)
+ ++-++++.+-+..+
T Consensus 222 awv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 222 AWVGHDSTVSFVDAAG 237 (361)
T ss_pred eEecCCCceEEeecCC
Confidence 3 34456777766553
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.86 E-value=1.9e-07 Score=94.60 Aligned_cols=214 Identities=11% Similarity=0.153 Sum_probs=135.0
Q ss_pred ecccccccCCCCCC--CCcCCCCeEEEeeCCCEEE-EEecC------CeEEEEc-CCCeeeEeEeecccceeEEEEecCC
Q 037368 7 FDFFEEKYGGKSTI--PEEVSGNITCCSSGRGKVV-IGCDD------GAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR 76 (823)
Q Consensus 7 f~ff~~~~~~~~~~--~~~~~~~is~~~~~~~~l~-~gs~d------G~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~ 76 (823)
|..|+-++.+...- ...++..+.-+.+-.++++ +|+.+ ..|.||| ....++.++. +..+|..|.+.+
T Consensus 28 friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r-- 104 (346)
T KOG2111|consen 28 FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRR-- 104 (346)
T ss_pred eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcC--
Confidence 56777766555311 1223334455555567764 45433 4699999 4555554554 668999999965
Q ss_pred CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEE-EEeCC
Q 037368 77 NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAI-GLDNG 155 (823)
Q Consensus 77 ~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~-G~~dG 155 (823)
+.++.+-+.. |.||.+.. +|+.++.+.... .| ....+++=+.+... +|. |..-|
T Consensus 105 ~riVvvl~~~----------I~VytF~~---------n~k~l~~~et~~--NP-kGlC~~~~~~~k~~---LafPg~k~G 159 (346)
T KOG2111|consen 105 DRIVVVLENK----------IYVYTFPD---------NPKLLHVIETRS--NP-KGLCSLCPTSNKSL---LAFPGFKTG 159 (346)
T ss_pred CeEEEEecCe----------EEEEEcCC---------Chhheeeeeccc--CC-CceEeecCCCCceE---EEcCCCccc
Confidence 5677665543 99999863 455666665432 24 12333333323223 443 56679
Q ss_pred eEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCe--EEEEEecCCCCcceEEcc--CCCccceecc
Q 037368 156 CIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNS--VILFSLQNQPPKRQFLDN--IGCSTNSVAM 231 (823)
Q Consensus 156 ~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~--V~~~d~~~~~~~~~~l~~--~~~~~~~~~~ 231 (823)
.|.+.+....+ -....++..+.++|.+++.+-+| ..+++++.++ |++||...+. +.+.+.. ....+.|++|
T Consensus 160 qvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~-~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 160 QVQIVDLASTK--PNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGT-LLQELRRGVDRADIYCIAF 234 (346)
T ss_pred eEEEEEhhhcC--cCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCc-EeeeeecCCchheEEEEEe
Confidence 99988753211 11235566778999999999999 5777777655 9999987653 4455531 2356889999
Q ss_pred cCCCeEE-EeeC-CeEEEEecCCC
Q 037368 232 SDRLELI-IGRP-EAVYFYEVDGR 253 (823)
Q Consensus 232 s~~~~li-v~~~-~~I~i~~~~g~ 253 (823)
||++.++ ++++ +++.++.+++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeecC
Confidence 9999865 4555 58999988754
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.85 E-value=6.7e-09 Score=109.50 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=122.1
Q ss_pred CCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe
Q 037368 44 DGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV 123 (823)
Q Consensus 44 dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~ 123 (823)
...+++||..|..+++++-|. .|..+.|.|-.-+|+++|+-|- ++--|++.. ..+..++.
T Consensus 190 K~y~yvYD~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~---------L~Y~DVS~G----------klVa~~~t 249 (545)
T KOG1272|consen 190 KKYVYVYDNNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGF---------LKYQDVSTG----------KLVASIRT 249 (545)
T ss_pred hceEEEecCCCcEEeehhhcC-chhhhcccchhheeeecccCCc---------eEEEeechh----------hhhHHHHc
Confidence 345667776676666666664 7999999998888899999886 888888743 23444442
Q ss_pred ccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEE-cCC
Q 037368 124 FTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAV-TPN 202 (823)
Q Consensus 124 ~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~-t~~ 202 (823)
. . +.+..++.+|-... +-+|..+|+|.+|.... +.+-.+ +.-+.+||.+|++.++|. .++++ -+.
T Consensus 250 ~--~---G~~~vm~qNP~NaV---ih~GhsnGtVSlWSP~s---kePLvK-iLcH~g~V~siAv~~~G~--YMaTtG~Dr 315 (545)
T KOG1272|consen 250 G--A---GRTDVMKQNPYNAV---IHLGHSNGTVSLWSPNS---KEPLVK-ILCHRGPVSSIAVDRGGR--YMATTGLDR 315 (545)
T ss_pred c--C---CccchhhcCCccce---EEEcCCCceEEecCCCC---cchHHH-HHhcCCCcceEEECCCCc--EEeeccccc
Confidence 2 1 23788888998888 99999999999998642 222111 234689999999999994 45444 456
Q ss_pred eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCCeEEEEe
Q 037368 203 SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYFYE 249 (823)
Q Consensus 203 ~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i~~ 249 (823)
.|.+||++.-.++...... .+...+++|..|.+++++++.|.+|.
T Consensus 316 ~~kIWDlR~~~ql~t~~tp--~~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 316 KVKIWDLRNFYQLHTYRTP--HPASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred ceeEeeeccccccceeecC--CCccccccccccceeeecCCeeeeeh
Confidence 7999999864333333322 23456788999999999999999996
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=4.1e-08 Score=101.17 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=84.9
Q ss_pred EEEE--EecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 37 KVVI--GCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 37 ~l~~--gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
+++. .+..|.|++|| -+.+.+.++.+|+++|.+++|+++|.+|||+|+.|| +|||+.+...+
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT--------VIRVf~v~~G~------- 207 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT--------VIRVFSVPEGQ------- 207 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce--------EEEEEEcCCcc-------
Confidence 6653 34689999999 777888889999999999999999999999999998 49999997432
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
.+..++-. ..| ..|.+++|+||++. +++.+..++|++|+.+
T Consensus 208 ---kl~eFRRG--~~~-~~IySL~Fs~ds~~---L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 208 ---KLYEFRRG--TYP-VSIYSLSFSPDSQF---LAASSNTETVHIFKLE 248 (391)
T ss_pred ---EeeeeeCC--cee-eEEEEEEECCCCCe---EEEecCCCeEEEEEec
Confidence 34444422 234 55999999999999 9999999999999865
No 209
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=9.5e-09 Score=119.50 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=133.8
Q ss_pred cceeEEEEecCCCE----EEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec
Q 037368 65 SSVLFLQQLKQRNF----LVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE 140 (823)
Q Consensus 65 ~~V~~i~~~~~~~~----l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~ 140 (823)
.+-+.++|.+.|.. +|.+.+||+ |-+||..+.-. ++.-..+.+.+.| ..+ |..+.|++
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~---------I~ly~p~~~~~----~~~~~~la~~~~h--~G~---V~gLDfN~ 126 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGN---------IVLYDPASIIA----NASEEVLATKSKH--TGP---VLGLDFNP 126 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCc---------eEEecchhhcc----CcchHHHhhhccc--CCc---eeeeeccc
Confidence 45677888876654 899999998 99999986310 1111123333322 344 99999999
Q ss_pred CCC-CcceEEEEEeCCeEEEEEcccccccccceeEE--ecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcc
Q 037368 141 EAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQ--VDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKR 216 (823)
Q Consensus 141 d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~--~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~ 216 (823)
... . +|+|..||.|.+||..- .. ..... ....+.|.+|+|+..-. ++|+.++.+ .+.+||++.+. +.
T Consensus 127 ~q~nl---LASGa~~geI~iWDlnn---~~-tP~~~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~~-pi 197 (1049)
T KOG0307|consen 127 FQGNL---LASGADDGEILIWDLNK---PE-TPFTPGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKKK-PI 197 (1049)
T ss_pred cCCce---eeccCCCCcEEEeccCC---cC-CCCCCCCCCCcccceEeccchhhh-HHhhccCCCCCceeccccCCC-cc
Confidence 765 8 99999999999998631 10 01111 11256799999976543 577777766 69999998763 33
Q ss_pred eEEccCCCc--cceecccCCC--eEEEeeCC----eEEEEecCCC-CccccccCCeE---EEEee--CcEEEEEEecCCC
Q 037368 217 QFLDNIGCS--TNSVAMSDRL--ELIIGRPE----AVYFYEVDGR-GPCWAFEGEKK---LLGWF--RGYLLCVIADQRN 282 (823)
Q Consensus 217 ~~l~~~~~~--~~~~~~s~~~--~liv~~~~----~I~i~~~~g~-~~~~~~~g~~~---~i~~~--~~ylv~~s~d~~~ 282 (823)
.-+..++.. +..+.|.|++ +++++.++ .|.+||.+-- .+...+++|.. .+.|- ++.+++.|.
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---- 273 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---- 273 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc----
Confidence 334434433 3447888866 57776542 6899997622 23346677743 45663 224443333
Q ss_pred CccEEEEEeCCCCEEEEecc
Q 037368 283 SKNIFNVYDLKNRLIAHSLV 302 (823)
Q Consensus 283 ~~~~I~I~D~~~~~i~~~~~ 302 (823)
.|+.|.+|+.+++.+..+..
T Consensus 274 kD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCeeEecCCCceEeeecC
Confidence 57899999999988765443
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.83 E-value=7.6e-07 Score=101.06 Aligned_cols=226 Identities=14% Similarity=0.150 Sum_probs=137.1
Q ss_pred cCCeEEEEc-CC-CeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC-CceE
Q 037368 43 DDGAVSLLD-RG-LKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS-PDCI 118 (823)
Q Consensus 43 ~dG~i~~~d-~~-~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~-~~~~ 118 (823)
.++.+.+|+ .+ .++...|.. ...|+++.|.| +.++||.|..+|+ |-+||+.+.. .. +.++
T Consensus 220 ~~~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~Gq---------V~lWD~~~~~------~~~~s~l 283 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQ---------VVLWDLRKGS------DTPPSGL 283 (555)
T ss_pred CCceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCce---------EEEEEccCCC------CCCCccc
Confidence 346899999 33 344434432 36899999999 5577888889998 9999998642 11 1122
Q ss_pred EEEEeccCCCCCCceEEEEEecCC--CCcceEEEEEeCCeEEEEEcccccccc------cceeEEe--cCCCCcceEEEe
Q 037368 119 GILRVFTSQFPEAKITSFLVLEEA--PPILLIAIGLDNGCIYCIKGDIARERI------TRFKLQV--DNQCSVMGLGFR 188 (823)
Q Consensus 119 ~~~~~~~~~~p~~~v~~va~~~d~--~~~~~ia~G~~dG~V~l~~~~~~~~~~------~k~~~~~--~~~~~It~l~fs 188 (823)
... .+.+.-| |+.+.|..+- .- +++++.||+|..|+.++..... .+...-. .....+|+++|.
T Consensus 284 s~~-~~sh~~~---v~~vvW~~~~~~~~---f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~ 356 (555)
T KOG1587|consen 284 SAL-EVSHSEP---VTAVVWLQNEHNTE---FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE 356 (555)
T ss_pred ccc-cccCCcC---eEEEEEeccCCCCc---eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec
Confidence 221 1222334 8888885432 34 8899999999999876433210 0110000 124579999998
Q ss_pred ecCCeEEEEEEcCCe-EEEEEecCCC-Cc------ceEEccCCCccceecccC--CCeEEEeeCCeEEEEecC-CCCccc
Q 037368 189 VDGQALQLFAVTPNS-VILFSLQNQP-PK------RQFLDNIGCSTNSVAMSD--RLELIIGRPEAVYFYEVD-GRGPCW 257 (823)
Q Consensus 189 ~dg~~~~l~~~t~~~-V~~~d~~~~~-~~------~~~l~~~~~~~~~~~~s~--~~~liv~~~~~I~i~~~~-g~~~~~ 257 (823)
+... ...+++|+.| |..-...+.. .. ...+..|..+++++.++| ..-|++++|.+|++|+.. ...+.+
T Consensus 357 ~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 357 PTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL 435 (555)
T ss_pred cCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch
Confidence 7653 4567777766 4442333222 12 112334566788888888 334667778899999876 445555
Q ss_pred cccCC---eEEEEeeCcE--EEEEEecCCCCccEEEEEeCCCCE
Q 037368 258 AFEGE---KKLLGWFRGY--LLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 258 ~~~g~---~~~i~~~~~y--lv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
.++-+ ...++|...+ +..+ .+ .+|.|.|||+....
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~-~d---~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFAT-VD---GDGNLDIWDLLQDD 475 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEE-Ec---CCCceehhhhhccc
Confidence 55443 2346775432 2222 22 57999999996543
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.82 E-value=1.8e-06 Score=96.38 Aligned_cols=271 Identities=14% Similarity=0.120 Sum_probs=137.0
Q ss_pred EeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEe
Q 037368 60 FQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL 139 (823)
Q Consensus 60 ~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~ 139 (823)
.....-....|+.+|.|.+++.||++. .-|+.... .+. +.+ +....++|.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g~ge----------Y~iyt~~~-------------~r~-k~~------G~g~~~vw~ 77 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCGDGE----------YEIYTALA-------------WRN-KAF------GSGLSFVWS 77 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEETTE----------EEEEETTT-------------TEE-EEE------EE-SEEEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEEcCCE----------EEEEEccC-------------Ccc-ccc------CceeEEEEe
Confidence 334455688999999999888866543 55665321 111 111 116778999
Q ss_pred cCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEE
Q 037368 140 EEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL 219 (823)
Q Consensus 140 ~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l 219 (823)
+++ . +|+--.+++|.+++. + .+.. .+.+ ..+.++..|-. | .+|.+.+++.|.+||...+. ....+
T Consensus 78 ~~n-~---yAv~~~~~~I~I~kn-~-~~~~--~k~i-~~~~~~~~If~---G--~LL~~~~~~~i~~yDw~~~~-~i~~i 142 (443)
T PF04053_consen 78 SRN-R---YAVLESSSTIKIYKN-F-KNEV--VKSI-KLPFSVEKIFG---G--NLLGVKSSDFICFYDWETGK-LIRRI 142 (443)
T ss_dssp TSS-E---EEEE-TTS-EEEEET-T-EE-T--T------SS-EEEEE----S--SSEEEEETTEEEEE-TTT---EEEEE
T ss_pred cCc-c---EEEEECCCeEEEEEc-C-cccc--ceEE-cCCcccceEEc---C--cEEEEECCCCEEEEEhhHcc-eeeEE
Confidence 844 5 677666889999853 1 1111 1111 11234555543 5 46777777789999998642 33444
Q ss_pred ccCCCccceecccCCCeEE-EeeCCeEEEEecCCC--------Cc--cc--ccc--CCeEEEEeeCcEEEEEEecCCCCc
Q 037368 220 DNIGCSTNSVAMSDRLELI-IGRPEAVYFYEVDGR--------GP--CW--AFE--GEKKLLGWFRGYLLCVIADQRNSK 284 (823)
Q Consensus 220 ~~~~~~~~~~~~s~~~~li-v~~~~~I~i~~~~g~--------~~--~~--~~~--g~~~~i~~~~~ylv~~s~d~~~~~ 284 (823)
+- .++..+.|+++|.++ +.+++++++++-+-. |. .+ ..| .......|.++ +.+-+..
T Consensus 143 ~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~----- 214 (443)
T PF04053_consen 143 DV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS----- 214 (443)
T ss_dssp SS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-----
T ss_pred ec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-----
Confidence 31 126788999998765 467788988764311 11 11 112 12346778887 3333321
Q ss_pred cEEEEEeCCCCEEEEeccccc---eeEEEeecCcEEEEEcCCeEEEEeecChHHHHHHHHHhccHHHHHHHHHhcC-CCH
Q 037368 285 NIFNVYDLKNRLIAHSLVVKE---VSHMLCEWGNIILVMTDKSVLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQ-ADA 360 (823)
Q Consensus 285 ~~I~I~D~~~~~i~~~~~i~~---v~~v~~~~~~~~vvs~~~~v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~-~~~ 360 (823)
..|+- +-++..+.-.++.. +..+....+.+|++.+++.+..+.--...-+.+..+-+++|+.|+++.+..+ +|.
T Consensus 215 ~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~ 292 (443)
T PF04053_consen 215 NHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPN 292 (443)
T ss_dssp TEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG
T ss_pred CeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhccc
Confidence 24443 33333332222333 2223334467999999999988864445566899999999999988776432 221
Q ss_pred HHHHHHHHHHhhhhccCCCHHHHHHH
Q 037368 361 AATAEVLRKYGDHLYSKQDYDEAMSQ 386 (823)
Q Consensus 361 ~~~~~I~~~y~d~L~~k~~y~~A~~~ 386 (823)
- =...+.+-+.||-++|-.+.|.+.
T Consensus 293 i-~~~~~~~i~~fL~~~G~~e~AL~~ 317 (443)
T PF04053_consen 293 I-PKDQGQSIARFLEKKGYPELALQF 317 (443)
T ss_dssp ---HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred C-ChhHHHHHHHHHHHCCCHHHHHhh
Confidence 1 123366668899999999999875
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=2.7e-07 Score=104.75 Aligned_cols=217 Identities=11% Similarity=0.048 Sum_probs=130.0
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF 124 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~ 124 (823)
.+|.+||.++...+.+..|...|....|+|+|+.|+.++.++. .+. |.+||+... .+. .+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~--~~~----l~~~dl~~g--------~~~---~l~~- 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERG--RSA----IYVQDLATG--------QRE---LVAS- 245 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCC--CcE----EEEEECCCC--------CEE---Eecc-
Confidence 4689999666655577778889999999999999999886542 122 899999742 211 1211
Q ss_pred cCCCCCCceEEEEEecCCCCcceEEEE-EeCCe--EEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC
Q 037368 125 TSQFPEAKITSFLVLEEAPPILLIAIG-LDNGC--IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP 201 (823)
Q Consensus 125 ~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~--V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~ 201 (823)
.+ +...+++|+|||+. +++. +.+|. |.+|+.. +...+.+....+..+..+|+|||+ .+++++..
T Consensus 246 ---~~-g~~~~~~~SpDG~~---l~~~~s~~g~~~Iy~~d~~-----~g~~~~lt~~~~~~~~~~~spDG~-~l~f~sd~ 312 (433)
T PRK04922 246 ---FR-GINGAPSFSPDGRR---LALTLSRDGNPEIYVMDLG-----SRQLTRLTNHFGIDTEPTWAPDGK-SIYFTSDR 312 (433)
T ss_pred ---CC-CCccCceECCCCCE---EEEEEeCCCCceEEEEECC-----CCCeEECccCCCCccceEECCCCC-EEEEEECC
Confidence 11 22567899999998 7754 44554 6666642 122233333344567899999995 45555543
Q ss_pred C---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-CC---eEEEEecCCCCccccccCC---eEEEEeeC
Q 037368 202 N---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PE---AVYFYEVDGRGPCWAFEGE---KKLLGWFR 270 (823)
Q Consensus 202 ~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~---~I~i~~~~g~~~~~~~~g~---~~~i~~~~ 270 (823)
. .|+.+++.+.. . +.+...+......+|||+|+.++ .. ++ .|++|+..+........+. ...+++++
T Consensus 313 ~g~~~iy~~dl~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG 390 (433)
T PRK04922 313 GGRPQIYRVAASGGS-A-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNG 390 (433)
T ss_pred CCCceEEEEECCCCC-e-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCC
Confidence 2 37777765432 2 22322333334578999998654 22 22 5889998643321111111 12345567
Q ss_pred cEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 271 GYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 271 ~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
.+++..+... ....|.++|+.++.
T Consensus 391 ~~i~~~s~~~--g~~~L~~~~~~g~~ 414 (433)
T PRK04922 391 SMVLYATREG--GRGVLAAVSTDGRV 414 (433)
T ss_pred CEEEEEEecC--CceEEEEEECCCCc
Confidence 7777665432 34568888876643
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=8.3e-07 Score=101.09 Aligned_cols=267 Identities=16% Similarity=0.183 Sum_probs=158.6
Q ss_pred eEEEeeCC--CEEEEEecCCeEEEEcCCC---e--eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 28 ITCCSSGR--GKVVIGCDDGAVSLLDRGL---K--FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 28 is~~~~~~--~~l~~gs~dG~i~~~d~~~---~--~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
++|.+.++ .++++|..||.|++|..-+ . -.+.|.=|...|++++|+++|.+|.|||..+. +-+|
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V---------Lv~W 278 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV---------LVLW 278 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceE---------EEEE
Confidence 67777654 6899999999999998332 1 23467778899999999999999999999986 9999
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc-cccccc---cccee---
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG-DIARER---ITRFK--- 173 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~-~~~~~~---~~k~~--- 173 (823)
.+.+.. ++.+= |+ ..| |..+.++||+.. .++-..|..|++... ++.-.+ +.+..
T Consensus 279 q~~T~~--------kqfLP--RL---gs~---I~~i~vS~ds~~---~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 279 QLETGK--------KQFLP--RL---GSP---ILHIVVSPDSDL---YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred eecCCC--------ccccc--cc---CCe---eEEEEEcCCCCe---EEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 998532 22110 11 345 999999999999 888899999999975 321000 00000
Q ss_pred EEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcc--eEEc-c-C-C-----CccceecccCCCeEEEee--
Q 037368 174 LQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKR--QFLD-N-I-G-----CSTNSVAMSDRLELIIGR-- 241 (823)
Q Consensus 174 ~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~--~~l~-~-~-~-----~~~~~~~~s~~~~liv~~-- 241 (823)
.-....+-.+++.++|.-+ ..++.+-.+.|..||+.+..... ++.+ + + | ..+..++.+-.|.+++..
T Consensus 340 ~k~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred ccccccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 0001134567888888432 45565666779999986544221 1111 1 1 1 122334444456544321
Q ss_pred --------CC--eEEEEecCCCCccccccC-----C----eE--EEEeeCc-EEEEEEecCCCCccEEEEEeCCC-----
Q 037368 242 --------PE--AVYFYEVDGRGPCWAFEG-----E----KK--LLGWFRG-YLLCVIADQRNSKNIFNVYDLKN----- 294 (823)
Q Consensus 242 --------~~--~I~i~~~~g~~~~~~~~g-----~----~~--~i~~~~~-ylv~~s~d~~~~~~~I~I~D~~~----- 294 (823)
++ .+++|.-+++...+.+.. | +. ...+.+. ..+.++ .++.++||-...
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-----~dg~~KiW~~~~~~n~~ 493 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-----VDGDFKIWVFTDDSNIY 493 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-----cCCeEEEEEEecccccC
Confidence 12 578898776554443321 1 11 1111222 333343 568999997632
Q ss_pred -CEEEEec-------cccceeEEEeecCcEEEEEcCCeEEEEe
Q 037368 295 -RLIAHSL-------VVKEVSHMLCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 295 -~~i~~~~-------~i~~v~~v~~~~~~~~vvs~~~~v~~l~ 329 (823)
+...+.. ..+....+|+.+|.++.++-++. +.++
T Consensus 494 k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~-Itiw 535 (792)
T KOG1963|consen 494 KKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDT-ITIW 535 (792)
T ss_pred cCccceEEeeeeccccCcccchhhcCCCcEEEEecCCE-EEEe
Confidence 1111111 11113335888898888887664 4444
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.79 E-value=2.7e-07 Score=92.19 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=85.7
Q ss_pred eEEEEcCCCeeeEeEee-cccceeEEEEecCCCEEEEEe--cCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEE
Q 037368 46 AVSLLDRGLKFNFGFQA-HSSSVLFLQQLKQRNFLVTVG--EDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILR 122 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~-H~~~V~~i~~~~~~~~l~s~s--~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~ 122 (823)
.|+.++..........- ..++|.+++|+|+|+.+|.+. .+.+ |.+||+.. ..+.++.
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~---------v~lyd~~~-----------~~i~~~~ 99 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK---------VTLYDVKG-----------KKIFSFG 99 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc---------cEEEcCcc-----------cEeEeec
Confidence 45556533333434443 346799999999999887664 3333 99999962 1233332
Q ss_pred eccCCCCCCceEEEEEecCCCCcceEEEEEe---CCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEE
Q 037368 123 VFTSQFPEAKITSFLVLEEAPPILLIAIGLD---NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAV 199 (823)
Q Consensus 123 ~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~---dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~ 199 (823)
..+ +.++.|+|+|+. +|+|+. .|.|.+|+.. . ...+.......++.++|+|||+ +++.++
T Consensus 100 ----~~~---~n~i~wsP~G~~---l~~~g~~n~~G~l~~wd~~-----~-~~~i~~~~~~~~t~~~WsPdGr-~~~ta~ 162 (194)
T PF08662_consen 100 ----TQP---RNTISWSPDGRF---LVLAGFGNLNGDLEFWDVR-----K-KKKISTFEHSDATDVEWSPDGR-YLATAT 162 (194)
T ss_pred ----CCC---ceEEEECCCCCE---EEEEEccCCCcEEEEEECC-----C-CEEeeccccCcEEEEEEcCCCC-EEEEEE
Confidence 223 899999999999 888753 4779999863 1 1122221234588999999996 455544
Q ss_pred c------CCeEEEEEecCC
Q 037368 200 T------PNSVILFSLQNQ 212 (823)
Q Consensus 200 t------~~~V~~~d~~~~ 212 (823)
+ ++++++|+..|+
T Consensus 163 t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eccceeccccEEEEEecCe
Confidence 4 567999999765
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=102.67 Aligned_cols=178 Identities=12% Similarity=0.162 Sum_probs=122.4
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
-|++|+....|+-++ ..|.-+..|+.-.+.|++|.+.+-+.+|++|++||. |-+||.....
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~---------VEfwDpR~ks--------- 208 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV---------VEFWDPRDKS--------- 208 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCce---------EEEecchhhh---------
Confidence 355555666788888 678878888888899999999999999999999998 9999987532
Q ss_pred ceEEEEEeccC--CCCC----CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe--cCCCCcceEEE
Q 037368 116 DCIGILRVFTS--QFPE----AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV--DNQCSVMGLGF 187 (823)
Q Consensus 116 ~~~~~~~~~~~--~~p~----~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~--~~~~~It~l~f 187 (823)
.+.++....+ ..|+ ..|+++.|+.||-. +|+|+.+|.|.+|+. |..++-.+. ..+-||..+.|
T Consensus 209 -rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~---~aVGts~G~v~iyDL-----Ra~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 209 -RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH---VAVGTSTGSVLIYDL-----RASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred -hheeeecccccCCCccccccCcceEEEecCCcee---EEeeccCCcEEEEEc-----ccCCceeecccCCccceeeecc
Confidence 1223322210 1221 23999999999988 999999999999986 223333333 34679999999
Q ss_pred eecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccC-CCeEEEeeCC
Q 037368 188 RVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD-RLELIIGRPE 243 (823)
Q Consensus 188 s~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~-~~~liv~~~~ 243 (823)
.+.+....++++...-+++||-.+. .+...++ ..+.++-+|+-| .|.|.+|.++
T Consensus 280 ~~~~~q~~v~S~Dk~~~kiWd~~~G-k~~asiE-pt~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 280 QDTDQQNKVVSMDKRILKIWDECTG-KPMASIE-PTSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred cccCCCceEEecchHHhhhcccccC-Cceeecc-ccCCcCceeeecCCceEEEecCC
Confidence 7664324455444455899996543 2334443 234466555555 6677777654
No 216
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=7.2e-08 Score=104.33 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=95.7
Q ss_pred EeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEE
Q 037368 58 FGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFL 137 (823)
Q Consensus 58 ~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va 137 (823)
.+...|...|..+.|.|....|+||++||+ +++|+|.+..+.+ ......+-+++.| ..| |-||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~---------lk~WnLqk~~~s~--~~~~epi~tfraH--~gP---Vl~v~ 351 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGT---------LKLWNLQKAKKSA--EKDVEPILTFRAH--EGP---VLCVV 351 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccc---------hhhhhhcccCCcc--ccceeeeEEEecc--cCc---eEEEE
Confidence 356678889999999999999999999998 9999995421100 1111234466644 567 99999
Q ss_pred EecCCCCcceEEEEEeCCeEEEEEccc------ccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC
Q 037368 138 VLEEAPPILLIAIGLDNGCIYCIKGDI------ARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 138 ~~~d~~~~~~ia~G~~dG~V~l~~~~~------~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
+.+++.. +.+|+.||+|+.|.... ..+...-...+..+.+.|++++++.... .++.+.++++|+.|....
T Consensus 352 v~~n~~~---~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 352 VPSNGEH---CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred ecCCceE---EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCC
Confidence 9999999 99999999999995321 1111111223445688999999998753 345555678899999765
Q ss_pred C
Q 037368 212 Q 212 (823)
Q Consensus 212 ~ 212 (823)
.
T Consensus 428 ~ 428 (577)
T KOG0642|consen 428 E 428 (577)
T ss_pred c
Confidence 4
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.78 E-value=1.8e-08 Score=106.33 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=103.2
Q ss_pred CCEEEEEecCCeEEEEcCC-CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLDRG-LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~~-~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
...+-+|...|+|.+|+++ -+++-..-.|.++|.+|++.++|.++||.|.|.. |||||+....
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~---------~kIWDlR~~~------- 326 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK---------VKIWDLRNFY------- 326 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc---------eeEeeecccc-------
Confidence 4577899999999999965 4555567789999999999999999999999998 9999998642
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE-EecCCCCcceEEEeecCC
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL-QVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~~~~~~It~l~fs~dg~ 192 (823)
-+.++.. ++| ++.++||..| . +|+|. +..|.+|.+-+.-........ .+...++|.+|.|.|-.
T Consensus 327 ---ql~t~~t---p~~---a~~ls~Sqkg-l---LA~~~-G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E- 391 (545)
T KOG1272|consen 327 ---QLHTYRT---PHP---ASNLSLSQKG-L---LALSY-GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE- 391 (545)
T ss_pred ---ccceeec---CCC---cccccccccc-c---eeeec-CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH-
Confidence 1223331 356 8899999875 4 67776 558999975331110111111 12236799999999865
Q ss_pred eEEEEEEcCCeEEEEEecC
Q 037368 193 ALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 193 ~~~l~~~t~~~V~~~d~~~ 211 (823)
.+|-++..+++...-+.+
T Consensus 392 -DvLGIGH~~G~tsilVPG 409 (545)
T KOG1272|consen 392 -DVLGIGHAGGITSILVPG 409 (545)
T ss_pred -HeeeccccCCceeEeccC
Confidence 577777777765554444
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.76 E-value=4e-07 Score=90.99 Aligned_cols=157 Identities=11% Similarity=0.134 Sum_probs=93.5
Q ss_pred eEEEEecCCCEEEEEec---CCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC
Q 037368 68 LFLQQLKQRNFLVTVGE---DEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP 144 (823)
Q Consensus 68 ~~i~~~~~~~~l~s~s~---D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~ 144 (823)
..+.|+|+|++|+.-.. |.+++.. ..-..+|-++..+ .| ...+.+.. ..| |.+++|+|+++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~--~~~~~l~~~~~~~-------~~--~~~i~l~~-~~~---I~~~~WsP~g~~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSY--YGEFELFYLNEKN-------IP--VESIELKK-EGP---IHDVAWSPNGNE 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceE--EeeEEEEEEecCC-------Cc--cceeeccC-CCc---eEEEEECcCCCE
Confidence 45778888887755433 3332110 1115556554321 22 22333211 234 999999999987
Q ss_pred cceEEE--EEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc---CCeEEEEEecCCCCcceEE
Q 037368 145 ILLIAI--GLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT---PNSVILFSLQNQPPKRQFL 219 (823)
Q Consensus 145 ~~~ia~--G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t---~~~V~~~d~~~~~~~~~~l 219 (823)
+|+ |..++.|.+|+.. +.+... + +..++..|.|+|+|+ .+++++. .+.|.+||+.... .....
T Consensus 74 ---favi~g~~~~~v~lyd~~-----~~~i~~-~-~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~-~i~~~ 141 (194)
T PF08662_consen 74 ---FAVIYGSMPAKVTLYDVK-----GKKIFS-F-GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKK-KISTF 141 (194)
T ss_pred ---EEEEEccCCcccEEEcCc-----ccEeEe-e-cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCE-Eeecc
Confidence 654 4456799999863 111111 2 356889999999995 3333332 2359999997432 22222
Q ss_pred ccCCCccceecccCCCeEEEee--------CCeEEEEecCCC
Q 037368 220 DNIGCSTNSVAMSDRLELIIGR--------PEAVYFYEVDGR 253 (823)
Q Consensus 220 ~~~~~~~~~~~~s~~~~liv~~--------~~~I~i~~~~g~ 253 (823)
+ +. .+..++|||+|+++++. ++++++|+..|+
T Consensus 142 ~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 142 E-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred c-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 2 32 35678999999966432 468899998876
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=5.2e-07 Score=97.10 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=111.9
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
.+.+.||+|-|+++.|..+|.+|+|+|+|-. +.|||..... .++.+... ++ +.|.|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r---------~ivWd~~~~K----------llhsI~Tg-Ht---aNIFsv 99 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTR---------LIVWDPFEYK----------LLHSISTG-HT---ANIFSV 99 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcce---------EEeecchhcc----------eeeeeecc-cc---cceeEE
Confidence 3467899999999999999999999999987 9999987432 34455432 12 349999
Q ss_pred EEecCC--CCcceEEEEEeCCeEEEEEcccccccc----cceeE-Ee-cCCCCcceEEEeecCCeEEEEEEcC-CeEEEE
Q 037368 137 LVLEEA--PPILLIAIGLDNGCIYCIKGDIARERI----TRFKL-QV-DNQCSVMGLGFRVDGQALQLFAVTP-NSVILF 207 (823)
Q Consensus 137 a~~~d~--~~~~~ia~G~~dG~V~l~~~~~~~~~~----~k~~~-~~-~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~ 207 (823)
.|-|-. +. +++|.+|..|++++.+-.++++ ....+ .+ -+...|..|+-.|++. +.+++++. +.++-|
T Consensus 100 KFvP~tnnri---v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQy 175 (758)
T KOG1310|consen 100 KFVPYTNNRI---VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQY 175 (758)
T ss_pred eeeccCCCeE---EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeee
Confidence 998853 45 9999999999999875323322 11111 11 1356788888878773 45555554 559999
Q ss_pred EecCCCCc------ceEEcc---CCCccceecccCCC--eEEEeeCC-eEEEEec
Q 037368 208 SLQNQPPK------RQFLDN---IGCSTNSVAMSDRL--ELIIGRPE-AVYFYEV 250 (823)
Q Consensus 208 d~~~~~~~------~~~l~~---~~~~~~~~~~s~~~--~liv~~~~-~I~i~~~ 250 (823)
|++....+ ...+.+ .-..+.|++++|.. .|+||+.+ -.++||.
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99752111 111111 11345689999855 47777766 6788984
No 220
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=5.9e-07 Score=91.79 Aligned_cols=249 Identities=17% Similarity=0.270 Sum_probs=152.3
Q ss_pred CCeEEEeeC--CCEEEEEecCCeEEEEcCC--Ce----eeEeEeeccc------------ceeEEEEecCCC--EEEEEe
Q 037368 26 GNITCCSSG--RGKVVIGCDDGAVSLLDRG--LK----FNFGFQAHSS------------SVLFLQQLKQRN--FLVTVG 83 (823)
Q Consensus 26 ~~is~~~~~--~~~l~~gs~dG~i~~~d~~--~~----~~~~~~~H~~------------~V~~i~~~~~~~--~l~s~s 83 (823)
+-|+|+.+. +.+|++|+.+|.|-++.++ .+ ....|+.|.. .|+.|.+.++++ .+...+
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457999884 5799999999999999732 22 3446777753 488999988664 355566
Q ss_pred cCCCCcccccceeEEEEeCCCCCCC--C---CCCCCCc---eEE--------------EEEeccCCCCCCceEEEEEecC
Q 037368 84 EDEQVSAQQSAVCLKVFDLDKMEPE--G---TSSTSPD---CIG--------------ILRVFTSQFPEAKITSFLVLEE 141 (823)
Q Consensus 84 ~D~~~~~~~~~~~vkvWdl~~~~~~--~---~~~~~~~---~~~--------------~~~~~~~~~p~~~v~~va~~~d 141 (823)
.|.| ||+|-+...... + +..+.|. .++ -.+++.+.++ ..|.++.++.|
T Consensus 106 Ndkt---------iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt-yhiNSIS~NsD 175 (433)
T KOG1354|consen 106 NDKT---------IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT-YHINSISVNSD 175 (433)
T ss_pred CCcc---------eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce-eEeeeeeecCc
Confidence 7887 999998754310 0 0011111 111 1122222122 33999999999
Q ss_pred CCCcceEEEEEeCCeEEEEEcccccccccceeEEec-----CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCC--
Q 037368 142 APPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-----NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPP-- 214 (823)
Q Consensus 142 ~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-----~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~-- 214 (823)
+.. +.++ .|=.|.||...++. ..-...-+.. ..+-||+-.|+|..-..+++.++.++|++.|++....
T Consensus 176 ~Et---~lSA-DdLRINLWnlei~d-~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 176 KET---FLSA-DDLRINLWNLEIID-QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred cce---Eeec-cceeeeeccccccC-CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 877 6654 36789999876421 1111111121 2467999999987422567777888899999985321
Q ss_pred -cceEEccC--C----------CccceecccCCCeEEEeeC-CeEEEEecC-CCCccccc--------------cCC---
Q 037368 215 -KRQFLDNI--G----------CSTNSVAMSDRLELIIGRP-EAVYFYEVD-GRGPCWAF--------------EGE--- 262 (823)
Q Consensus 215 -~~~~l~~~--~----------~~~~~~~~s~~~~liv~~~-~~I~i~~~~-g~~~~~~~--------------~g~--- 262 (823)
..+.++.. + ..+..+-|+++|+++.+++ -+|++||+. ..+++... |..
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 12222211 1 1223456788999999999 699999984 33443221 221
Q ss_pred -eEEEEeeCc--EEEEEEecCCCCccEEEEEeCCC
Q 037368 263 -KKLLGWFRG--YLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 263 -~~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
+.-++|.|+ ++++++. ...+++++...
T Consensus 331 dKFec~~sg~~~~v~TGsy-----~n~frvf~~~~ 360 (433)
T KOG1354|consen 331 DKFECSWSGNDSYVMTGSY-----NNVFRVFNLAR 360 (433)
T ss_pred heeEEEEcCCcceEecccc-----cceEEEecCCC
Confidence 334677776 7777764 36788888543
No 221
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.70 E-value=1.9e-08 Score=112.61 Aligned_cols=106 Identities=18% Similarity=0.309 Sum_probs=86.3
Q ss_pred CeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 27 NITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 27 ~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.|-|+.+.. .++++|+.|..|+||+ .++.++.+.+||++.|+.++++....+++++|.|.. |+||-+.
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v---------IrvWrl~ 262 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV---------IRVWRLP 262 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCce---------EEEEecC
Confidence 378888865 4899999999999999 678888899999999999999988888999999986 9999987
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
. +.| +..++.| + +.|++++|+|-. +.+.||++.+|+..
T Consensus 263 ~--------~~p--vsvLrgh--t---gavtaiafsP~~-------sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 D--------GAP--VSVLRGH--T---GAVTAIAFSPRA-------SSSDDGTCRIWDAR 300 (1113)
T ss_pred C--------Cch--HHHHhcc--c---cceeeeccCccc-------cCCCCCceEecccc
Confidence 3 233 3344433 3 349999999943 44779999999864
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=6.7e-07 Score=93.02 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=131.3
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEc-CC----CeeeEeEeecccceeEEEEecCC-CEEEEEecC--CCCcccccceeEEE
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLD-RG----LKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGED--EQVSAQQSAVCLKV 99 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d-~~----~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D--~~~~~~~~~~~vkv 99 (823)
|-...-.+++|++|..+|.+.+|. .. ......+..| .++..|.-++.. .++++||.. .- ++|
T Consensus 108 I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~---------lki 177 (412)
T KOG3881|consen 108 IKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE---------LKI 177 (412)
T ss_pred ccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc---------eee
Confidence 444444567999999999999998 32 2223234434 567777766644 566778877 43 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEec--cC-----CCCCCceEEEEEecC--CCCcceEEEEEeCCeEEEEEccccccccc
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVF--TS-----QFPEAKITSFLVLEE--APPILLIAIGLDNGCIYCIKGDIARERIT 170 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~--~~-----~~p~~~v~~va~~~d--~~~~~~ia~G~~dG~V~l~~~~~~~~~~~ 170 (823)
||+.... +++..- ++ -.| -.++.+.|-|. ... +|+++.-|.|++|+.. + +-
T Consensus 178 wdle~~~------------qiw~aKNvpnD~L~LrVP-vW~tdi~Fl~g~~~~~---fat~T~~hqvR~YDt~--~--qR 237 (412)
T KOG3881|consen 178 WDLEQSK------------QIWSAKNVPNDRLGLRVP-VWITDIRFLEGSPNYK---FATITRYHQVRLYDTR--H--QR 237 (412)
T ss_pred eecccce------------eeeeccCCCCccccceee-eeeccceecCCCCCce---EEEEecceeEEEecCc--c--cC
Confidence 9998431 111100 00 012 34788999887 677 9999999999999863 1 21
Q ss_pred ceeEEec-CCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEE
Q 037368 171 RFKLQVD-NQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVY 246 (823)
Q Consensus 171 k~~~~~~-~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~ 246 (823)
++..-+. .+.||+++...|+| +.+++++.. .+..||++++..+...+.+....+..++..|++.+++++ |..|+
T Consensus 238 RPV~~fd~~E~~is~~~l~p~g--n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvR 315 (412)
T KOG3881|consen 238 RPVAQFDFLENPISSTGLTPSG--NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVR 315 (412)
T ss_pred cceeEeccccCcceeeeecCCC--cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEE
Confidence 2222222 37899999999999 567777664 599999987544444455555667778888888887644 45899
Q ss_pred EEecCCCCc
Q 037368 247 FYEVDGRGP 255 (823)
Q Consensus 247 i~~~~g~~~ 255 (823)
|+|++.+..
T Consensus 316 IhD~ktrkl 324 (412)
T KOG3881|consen 316 IHDIKTRKL 324 (412)
T ss_pred Eeecccchh
Confidence 999986554
No 223
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.69 E-value=2.7e-07 Score=92.06 Aligned_cols=159 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc-CCCCCCceEEEEEec
Q 037368 62 AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT-SQFPEAKITSFLVLE 140 (823)
Q Consensus 62 ~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~v~~va~~~ 140 (823)
.|-+.|.|+.|.|++..+++..+ .. |.+|++.... ..+..+.... ... ..+.++-+|+|
T Consensus 121 eavg~i~cvew~Pns~klasm~d-n~---------i~l~~l~ess---------~~vaev~ss~s~e~-~~~ftsg~Wsp 180 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMDD-NN---------IVLWSLDESS---------KIVAEVLSSESAEM-RHSFTSGAWSP 180 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEecc-Cc---------eEEEEcccCc---------chheeecccccccc-cceecccccCC
Confidence 35579999999999999998864 44 9999998532 1122221110 000 02377788988
Q ss_pred --CCCCcceEEEEEeCCeEEEEEcccccccccceeE-Ee-cCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCc
Q 037368 141 --EAPPILLIAIGLDNGCIYCIKGDIARERITRFKL-QV-DNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPK 215 (823)
Q Consensus 141 --d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~-~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~ 215 (823)
|++. +|+.+ |+++..|+.. ..+.-. +. .+...|..|.|+|+-+ ++|+.+.++ .|++||++....+
T Consensus 181 HHdgnq---v~tt~-d~tl~~~D~R-----T~~~~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~p 250 (370)
T KOG1007|consen 181 HHDGNQ---VATTS-DSTLQFWDLR-----TMKKNNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFP 250 (370)
T ss_pred CCccce---EEEeC-CCcEEEEEcc-----chhhhcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCcc
Confidence 7777 77654 9999999852 211111 11 2356799999999864 556666554 5999999865568
Q ss_pred ceEEccCCCccceecccC-CCeEE-EeeCC-eEEEEec
Q 037368 216 RQFLDNIGCSTNSVAMSD-RLELI-IGRPE-AVYFYEV 250 (823)
Q Consensus 216 ~~~l~~~~~~~~~~~~s~-~~~li-v~~~~-~I~i~~~ 250 (823)
.+.+.+|...+.|+-|.| -.+++ .|+.| .|.+|..
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 888889999999999987 34444 44444 6777754
No 224
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.69 E-value=7.8e-06 Score=90.50 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=147.2
Q ss_pred CeEEEeeC--CCEEEEEecCCeEEEEc-CCCe-eeEeEeeccc-ceeEEEE-ecCCC-EEEEEec-CCCCcccccceeEE
Q 037368 27 NITCCSSG--RGKVVIGCDDGAVSLLD-RGLK-FNFGFQAHSS-SVLFLQQ-LKQRN-FLVTVGE-DEQVSAQQSAVCLK 98 (823)
Q Consensus 27 ~is~~~~~--~~~l~~gs~dG~i~~~d-~~~~-~~~~~~~H~~-~V~~i~~-~~~~~-~l~s~s~-D~~~~~~~~~~~vk 98 (823)
.+.++... ...++.++.++.+.+|+ ..+. .+..+.++.. .+..+.+ .+++. .++.++. |++ ++
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---------~~ 137 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT---------VK 137 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCcc---------EE
Confidence 35555553 34677888899999999 4443 5667777553 7888877 77777 5666555 777 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEec
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVD 177 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~ 177 (823)
+|+.... ......+..+ . ..|.+++|+|++.. ++.+.. +|.+.+|+.. .+.....+..
T Consensus 138 ~~~~~~~---------~~~~~~~~~~--~---~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 196 (466)
T COG2319 138 LWDLSTP---------GKLIRTLEGH--S---ESVTSLAFSPDGKL---LASGSSLDGTIKLWDLR----TGKPLSTLAG 196 (466)
T ss_pred EEEecCC---------CeEEEEEecC--c---ccEEEEEECCCCCE---EEecCCCCCceEEEEcC----CCceEEeecc
Confidence 9999740 0123333322 1 34899999999988 888875 9999999863 1122223334
Q ss_pred CCCCcceEEEeecCCeEEEEE-EcCCeEEEEEecCCCCcce-EEccCCCccceecccCCCeE-EEe-eCCeEEEEecCCC
Q 037368 178 NQCSVMGLGFRVDGQALQLFA-VTPNSVILFSLQNQPPKRQ-FLDNIGCSTNSVAMSDRLEL-IIG-RPEAVYFYEVDGR 253 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~-~t~~~V~~~d~~~~~~~~~-~l~~~~~~~~~~~~s~~~~l-iv~-~~~~I~i~~~~g~ 253 (823)
+..+|++++|++++. ..+.. ..++.|.+|+... ..... .+..|.... ...|+|++.+ +.+ .++.+++|+....
T Consensus 197 ~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 197 HTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred CCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 578999999998873 23333 3456688997763 22333 455555443 3378888754 433 3468999998744
Q ss_pred Cc-cccccCC---eEEEEee--CcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 254 GP-CWAFEGE---KKLLGWF--RGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 254 ~~-~~~~~g~---~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
.. ...+.+| ...+.+. +..+++++. ++.+.+||..+...
T Consensus 274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~ 318 (466)
T COG2319 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSS-----DGTVRLWDLETGKL 318 (466)
T ss_pred CcEEEEEecCCccEEEEEECCCCCEEEEeeC-----CCcEEEEEcCCCce
Confidence 33 2222233 2233443 356666443 36699998876543
No 225
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.68 E-value=4.7e-06 Score=92.27 Aligned_cols=223 Identities=21% Similarity=0.223 Sum_probs=139.3
Q ss_pred EEE-EecCCeEEEEcCC--CeeeEeEeecccceeEEEEecCCCEEEEEec-CCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 38 VVI-GCDDGAVSLLDRG--LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGE-DEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 38 l~~-gs~dG~i~~~d~~--~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~-D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
++. ++.++.+.+|+.. +.....+.+|...|..+.++|++..+++++. |++ +++|++...
T Consensus 126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-------- 188 (466)
T COG2319 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT---------IKLWDLRTG-------- 188 (466)
T ss_pred EeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc---------eEEEEcCCC--------
Confidence 444 3459999999944 5777889999999999999999999998886 887 999999842
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee-EEecCCCCcceEEEeecCC
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK-LQVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~-~~~~~~~~It~l~fs~dg~ 192 (823)
..+.++..+ ..+ |.+++++|++.. .++.++.||.|.+|+.. .+.... .+..+...+ -..|++++.
T Consensus 189 --~~~~~~~~~--~~~---v~~~~~~~~~~~--~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (466)
T COG2319 189 --KPLSTLAGH--TDP---VSSLAFSPDGGL--LIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGS 254 (466)
T ss_pred --ceEEeeccC--CCc---eEEEEEcCCcce--EEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCC
Confidence 134444422 233 999999999983 05555889999999542 111122 122222332 227888873
Q ss_pred eEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEee-CCeEEEEecCCCCcccccc--CC---eEE
Q 037368 193 ALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGR-PEAVYFYEVDGRGPCWAFE--GE---KKL 265 (823)
Q Consensus 193 ~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~-~~~I~i~~~~g~~~~~~~~--g~---~~~ 265 (823)
.++..+.++.+++|++.........+..|...+.++.|.|++. +++++ ++.+.+|+........... ++ ...
T Consensus 255 -~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (466)
T COG2319 255 -LLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333 (466)
T ss_pred -EEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEE
Confidence 3333344566999999754432233345667788889998555 44433 3468999766433221111 22 223
Q ss_pred EEeeC--cEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 266 LGWFR--GYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 266 i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+.+.. ..++.... .++.+.+|+.....
T Consensus 334 ~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~ 362 (466)
T COG2319 334 LSFSPDGSLLVSGGS----DDGTIRLWDLRTGK 362 (466)
T ss_pred EEECCCCCEEEEeec----CCCcEEeeecCCCc
Confidence 33311 23333322 34788889887654
No 226
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.68 E-value=1.1e-07 Score=99.05 Aligned_cols=155 Identities=17% Similarity=0.228 Sum_probs=104.5
Q ss_pred cceeEEEEecCCC-EEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC
Q 037368 65 SSVLFLQQLKQRN-FLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP 143 (823)
Q Consensus 65 ~~V~~i~~~~~~~-~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~ 143 (823)
.+|.++.|.+... .++|||.|.. |++|-+.+.+..+. ...-..+.++.-| + ..|++|.|+|+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~---------iriW~v~r~~~~~~-~~~V~y~s~Ls~H--~---~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKD---------IRIWKVNRSEPGGG-DMKVEYLSSLSRH--T---RAVNVVRFSPDGE 78 (434)
T ss_pred CceEEEEeccCcccceecccCccc---------eeeeeeeecCCCCC-ceeEEEeecccCC--c---ceeEEEEEcCCcC
Confidence 4888999987665 9999999998 99999987542110 0011112222211 2 3499999999999
Q ss_pred CcceEEEEEeCCeEEEEEcc---cc-ccc-----c--cce-eEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC
Q 037368 144 PILLIAIGLDNGCIYCIKGD---IA-RER-----I--TRF-KLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 144 ~~~~ia~G~~dG~V~l~~~~---~~-~~~-----~--~k~-~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
. +|+|..+|.|.+|... +. -++ . ++. +++..+...|..++|++++. ..++.+-++.+++||+..
T Consensus 79 l---LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 79 L---LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred e---eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc
Confidence 9 9999999999999642 10 001 0 111 12234567899999999984 333444467899999975
Q ss_pred CCCcceEEccCCCccceecccCCCeEEE
Q 037368 212 QPPKRQFLDNIGCSTNSVAMSDRLELII 239 (823)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~s~~~~liv 239 (823)
+.....+++|..-+.-++|.|-++++.
T Consensus 155 -G~l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 155 -GQLLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred -ceeEeeccccccccceeecchhhhhhh
Confidence 346777888887777778887655443
No 227
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.67 E-value=5e-07 Score=98.52 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=109.5
Q ss_pred eEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEE
Q 037368 57 NFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITS 135 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~ 135 (823)
+.-+.+|+..|+.+.|+| ...+|||||.|.. ||||.+.+... .+...|. +.+.....+ |-|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~---------VKiW~lp~g~~--q~LSape----~~~g~~~~~---vE~ 133 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEP---------VKIWKLPRGHS--QKLSAPE----IDVGGGNVI---VEC 133 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCe---------eEEEecCCCcc--cccCCcc----eeecCCceE---EEE
Confidence 345678999999999999 4467899999998 99999984320 0011121 111111234 999
Q ss_pred EEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe---cCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecC
Q 037368 136 FLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV---DNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQN 211 (823)
Q Consensus 136 va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~---~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~ 211 (823)
+.|||...- |......|+|++|+.. +++.+. ++.+.|.+..|+.|| .+|.+++.+ +|++||.+.
T Consensus 134 l~fHpTaDg---il~s~a~g~v~i~D~s-------tqk~~~el~~h~d~vQSa~WseDG--~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 134 LRFHPTADG---ILASGAHGSVYITDIS-------TQKTAVELSGHTDKVQSADWSEDG--KLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eecccCcCc---eEEeccCceEEEEEcc-------cCceeecccCCchhhhccccccCC--ceEeeecCCcceEEeCCcc
Confidence 999997655 5555569999999863 222333 456789999999999 467766654 599999887
Q ss_pred CCCcceEEccCCCccc-eecccCCC-eEEEee-----CCeEEEEecC
Q 037368 212 QPPKRQFLDNIGCSTN-SVAMSDRL-ELIIGR-----PEAVYFYEVD 251 (823)
Q Consensus 212 ~~~~~~~l~~~~~~~~-~~~~s~~~-~liv~~-----~~~I~i~~~~ 251 (823)
+..+.+..++|+.--. .+.|..+- +++..+ -..|++||+.
T Consensus 202 ~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 202 SMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred CCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeecc
Confidence 7677777777766432 24554332 233221 1357888876
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=2.8e-06 Score=87.91 Aligned_cols=231 Identities=12% Similarity=0.082 Sum_probs=142.9
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEcC-------CCeeeEeEee--cccceeEEEEecCCCEEEEEecCCCCccccccee
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLDR-------GLKFNFGFQA--HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVC 96 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d~-------~~~~~~~~~~--H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~ 96 (823)
|+++.++ +.+|++|+.|..+++|+- ..+++ ..++ |...|.|+.|.....+|.|++.|++
T Consensus 59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~--------- 128 (609)
T KOG4227|consen 59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENRFLYSGERWGT--------- 128 (609)
T ss_pred cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCeeEecCCCcce---------
Confidence 6666664 358899999999999982 23555 3444 5689999999998899999999998
Q ss_pred EEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe
Q 037368 97 LKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV 176 (823)
Q Consensus 97 vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~ 176 (823)
|...|+.+.+ ++.++.....-+.|.-+..+|-.+. +|+.+.+|.|.+|+. |++......+.
T Consensus 129 VI~HDiEt~q-------------si~V~~~~~~~~~VY~m~~~P~DN~---~~~~t~~~~V~~~D~---Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 129 VIKHDIETKQ-------------SIYVANENNNRGDVYHMDQHPTDNT---LIVVTRAKLVSFIDN---RDRQNPISLVL 189 (609)
T ss_pred eEeeecccce-------------eeeeecccCcccceeecccCCCCce---EEEEecCceEEEEec---cCCCCCCceee
Confidence 8899998532 3444421110023889999998778 999999999999986 34432222222
Q ss_pred --cCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEc-cCCCc-----cceecccCCCe-EEEe-eCCeE
Q 037368 177 --DNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLD-NIGCS-----TNSVAMSDRLE-LIIG-RPEAV 245 (823)
Q Consensus 177 --~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~-~~~~~-----~~~~~~s~~~~-liv~-~~~~I 245 (823)
.....-.++-|.|... .+|++++. +++-+||......+..... ..+-+ --.+.|+|+|. |+.- +...-
T Consensus 190 ~AN~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred ecCCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 3345567888988653 45555544 5699999875432211110 11111 11346888774 5443 44455
Q ss_pred EEEecCC-CCcccccc----CC-----eEEEEeeCcEEEEEEecCCCCccEEEEEeC
Q 037368 246 YFYEVDG-RGPCWAFE----GE-----KKLLGWFRGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 246 ~i~~~~g-~~~~~~~~----g~-----~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
.+|+... +-+.+.++ |- .....+-++|-|+... .+-.|.||-+
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGS----D~~~i~~Wkl 321 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGS----DHWGIHIWKL 321 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccC----cccceEEEec
Confidence 6677653 22222333 11 1234555666544433 2457999966
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.66 E-value=3.9e-06 Score=94.95 Aligned_cols=217 Identities=12% Similarity=0.081 Sum_probs=126.8
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF 124 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~ 124 (823)
..|.++|.++...+.+..+...+....|+|+|+.|+.++.++. . +. |.+||+.+. .. . .+..+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~-~-~~----i~v~d~~~g--------~~--~-~~~~~ 232 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESG-K-PE----IYVQDLATG--------QR--E-KVASF 232 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCC-C-cE----EEEEECCCC--------CE--E-EeecC
Confidence 3688888665545567777778999999999999998876541 1 12 999999742 11 1 11111
Q ss_pred cCCCCCCceEEEEEecCCCCcceEEEE-EeCCe--EEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC
Q 037368 125 TSQFPEAKITSFLVLEEAPPILLIAIG-LDNGC--IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP 201 (823)
Q Consensus 125 ~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~--V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~ 201 (823)
. ..+.+++|+||++. +++. ..+|. |.+|+.. +.+.+.+.......+...|++||+ .+++++..
T Consensus 233 --~---~~~~~~~~spDg~~---l~~~~~~~~~~~i~~~d~~-----~~~~~~l~~~~~~~~~~~~s~dg~-~l~~~s~~ 298 (417)
T TIGR02800 233 --P---GMNGAPAFSPDGSK---LAVSLSKDGNPDIYVMDLD-----GKQLTRLTNGPGIDTEPSWSPDGK-SIAFTSDR 298 (417)
T ss_pred --C---CCccceEECCCCCE---EEEEECCCCCccEEEEECC-----CCCEEECCCCCCCCCCEEECCCCC-EEEEEECC
Confidence 1 22677899999987 7654 33454 5556532 122233333345566789999985 44555543
Q ss_pred C---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-CC---eEEEEecCCCCccccccC-C--eEEEEeeC
Q 037368 202 N---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PE---AVYFYEVDGRGPCWAFEG-E--KKLLGWFR 270 (823)
Q Consensus 202 ~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~---~I~i~~~~g~~~~~~~~g-~--~~~i~~~~ 270 (823)
+ .|+++++.+.. ...+...+.......|+|+|..++ +. ++ .|++|++.+.......++ . ...+++++
T Consensus 299 ~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg 376 (417)
T TIGR02800 299 GGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNG 376 (417)
T ss_pred CCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCC
Confidence 2 47888876532 233333344445668899887554 32 22 678888765322111111 1 12355567
Q ss_pred cEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 271 GYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 271 ~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
.+|+..+.++ ....+.+.+..++.
T Consensus 377 ~~l~~~~~~~--~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 377 RMILYATTRG--GRGVLGLVSTDGRF 400 (417)
T ss_pred CEEEEEEeCC--CcEEEEEEECCCce
Confidence 7777776542 22456666665543
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.9e-06 Score=88.74 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=99.8
Q ss_pred CCCeEEEeeC---CCEEEEEecCCeEEEEc--CCCeeeE-------------eEeecccceeEEEEecCCCEEEEEecCC
Q 037368 25 SGNITCCSSG---RGKVVIGCDDGAVSLLD--RGLKFNF-------------GFQAHSSSVLFLQQLKQRNFLVTVGEDE 86 (823)
Q Consensus 25 ~~~is~~~~~---~~~l~~gs~dG~i~~~d--~~~~~~~-------------~~~~H~~~V~~i~~~~~~~~l~s~s~D~ 86 (823)
.-+|+|++.- .+.|++|...| |.+|. +.++..+ ..++| -+|++|.+.+||..|+|+|-+.
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 4469999974 35789998777 88887 3333222 22334 5899999999999999999887
Q ss_pred CCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccc
Q 037368 87 QVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIAR 166 (823)
Q Consensus 87 ~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~ 166 (823)
.. |+|||.+... ..| ... ..+ +.++-+.||||+.. +.+++-|+.-++|+-.-
T Consensus 218 ss--------i~iWdpdtg~------~~p----L~~----~gl-gg~slLkwSPdgd~---lfaAt~davfrlw~e~q-- 269 (445)
T KOG2139|consen 218 SS--------IMIWDPDTGQ------KIP----LIP----KGL-GGFSLLKWSPDGDV---LFAATCDAVFRLWQENQ-- 269 (445)
T ss_pred ce--------EEEEcCCCCC------ccc----ccc----cCC-CceeeEEEcCCCCE---EEEecccceeeeehhcc--
Confidence 52 9999998532 122 111 112 34889999999999 88888899999995310
Q ss_pred ccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC
Q 037368 167 ERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN 202 (823)
Q Consensus 167 ~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~ 202 (823)
.-.+.+- .-+.+.|++-.|+|+|. .+||+++..
T Consensus 270 -~wt~erw-~lgsgrvqtacWspcGs-fLLf~~sgs 302 (445)
T KOG2139|consen 270 -SWTKERW-ILGSGRVQTACWSPCGS-FLLFACSGS 302 (445)
T ss_pred -cceecce-eccCCceeeeeecCCCC-EEEEEEcCC
Confidence 0011121 22456899999999995 566666544
No 231
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.60 E-value=2.1e-05 Score=83.50 Aligned_cols=248 Identities=19% Similarity=0.279 Sum_probs=149.8
Q ss_pred EEeeCCCEEEEEecCCeEEEEcC-CC-eeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 30 CCSSGRGKVVIGCDDGAVSLLDR-GL-KFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 30 ~~~~~~~~l~~gs~dG~i~~~d~-~~-~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
|.+.+++.|++||.+| |.+++. +. +..+.. +..+|.+|.+.|+-+.|+..++ ++ +.++++.....
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd-~~---------l~~~~L~~l~~ 68 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSD-GQ---------LYVYDLDSLEP 68 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcC-Cc---------cEEEEchhhcc
Confidence 5677889999999999 888884 32 222222 3334999999999999998876 66 99999986532
Q ss_pred CCCCCCCCceEEEEEeccCCCCC-CceEEEE--EecCCCCcceEEEEEeCCeEEEEEcccccccccce-eEEe--cCCCC
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPE-AKITSFL--VLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF-KLQV--DNQCS 181 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~-~~v~~va--~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~-~~~~--~~~~~ 181 (823)
.. ...+.............+. ..+..++ -.+.+.. .++++. ..+|.+|...- ... .. +.+. .-.++
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~--~L~va~-kk~i~i~~~~~--~~~-~f~~~~ke~~lp~~ 140 (275)
T PF00780_consen 69 VS--TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR--RLCVAV-KKKILIYEWND--PRN-SFSKLLKEISLPDP 140 (275)
T ss_pred cc--ccccccccccccccccccccCCeeEEeeccccccce--EEEEEE-CCEEEEEEEEC--Ccc-cccceeEEEEcCCC
Confidence 10 0000000000000000111 1266666 1222222 155555 55888876431 101 11 1222 23688
Q ss_pred cceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccC-----------CCccceecccCCCeEEEeeCCeEEEEec
Q 037368 182 VMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNI-----------GCSTNSVAMSDRLELIIGRPEAVYFYEV 250 (823)
Q Consensus 182 It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~-----------~~~~~~~~~s~~~~liv~~~~~I~i~~~ 250 (823)
+.++.|.++ .+++++.++..+.|+.+.. +..+++.. +..+-++..-+++.++++.++.-.+.+.
T Consensus 141 ~~~i~~~~~----~i~v~~~~~f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~ 215 (275)
T PF00780_consen 141 PSSIAFLGN----KICVGTSKGFYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNK 215 (275)
T ss_pred cEEEEEeCC----EEEEEeCCceEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcC
Confidence 999999853 5788888889999998432 33333211 1111122222467888887776666677
Q ss_pred CCCC---ccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEE
Q 037368 251 DGRG---PCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHM 309 (823)
Q Consensus 251 ~g~~---~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v 309 (823)
.|.. ..+.|+..+..+.+..+||+++.+ ..|.||++.++...+.-..++++.+
T Consensus 216 ~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~------~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 216 NGEPSRKSTIQWSSAPQSVAYSSPYLIAFSS------NSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred CCCcCcccEEEcCCchhEEEEECCEEEEECC------CEEEEEECcCCcEEEEEECCCEEEE
Confidence 7642 346788888899999999999874 4799999999887776666665543
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=6.7e-06 Score=93.42 Aligned_cols=216 Identities=10% Similarity=0.061 Sum_probs=125.3
Q ss_pred eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc
Q 037368 46 AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT 125 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~ 125 (823)
.|.++|.+|...+.+..|...+....|+|+|+.|+.++.++. .+. |.+||+... ... .+..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~--~~~----l~~~~l~~g--------~~~---~l~~-- 240 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQK--RPR----IFVQNLDTG--------RRE---QITN-- 240 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCC--CCE----EEEEECCCC--------CEE---EccC--
Confidence 477888666555566677888999999999999988876642 122 888998742 211 1211
Q ss_pred CCCCCCceEEEEEecCCCCcceEEEE-EeCCe--EEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC
Q 037368 126 SQFPEAKITSFLVLEEAPPILLIAIG-LDNGC--IYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN 202 (823)
Q Consensus 126 ~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~--V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~ 202 (823)
.+ +.+.+.+|+|||+. +|.. ..+|. |.+++.+ +.+.+.+.......++..|+|||+ .+++++..+
T Consensus 241 --~~-g~~~~~~~SpDG~~---la~~~~~~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~~spDg~-~i~f~s~~~ 308 (430)
T PRK00178 241 --FE-GLNGAPAWSPDGSK---LAFVLSKDGNPEIYVMDLA-----SRQLSRVTNHPAIDTEPFWGKDGR-TLYFTSDRG 308 (430)
T ss_pred --CC-CCcCCeEECCCCCE---EEEEEccCCCceEEEEECC-----CCCeEEcccCCCCcCCeEECCCCC-EEEEEECCC
Confidence 11 12567899999998 8754 34554 5555542 222333444445577889999995 455555432
Q ss_pred ---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe-e-C-C--eEEEEecCCCCcc-ccccC--CeEEEEeeCc
Q 037368 203 ---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG-R-P-E--AVYFYEVDGRGPC-WAFEG--EKKLLGWFRG 271 (823)
Q Consensus 203 ---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~-~-~-~--~I~i~~~~g~~~~-~~~~g--~~~~i~~~~~ 271 (823)
.|+.+++.+.. . ..+...+.......|+|+|+.++. . . + .|++|+..+.... ++-.+ ..-.+++++.
T Consensus 309 g~~~iy~~d~~~g~-~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~ 386 (430)
T PRK00178 309 GKPQIYKVNVNGGR-A-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGT 386 (430)
T ss_pred CCceEEEEECCCCC-E-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCC
Confidence 47778876532 2 222212222223578999886542 2 2 2 4778887643221 11111 1124555677
Q ss_pred EEEEEEecCCCCccEEEEEeCCCCE
Q 037368 272 YLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 272 ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+++..+.++ ....|.++++.++.
T Consensus 387 ~i~~~~~~~--g~~~l~~~~~~g~~ 409 (430)
T PRK00178 387 MLIYATRQQ--GRGVLMLVSINGRV 409 (430)
T ss_pred EEEEEEecC--CceEEEEEECCCCc
Confidence 776665432 23567777776543
No 233
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.3e-06 Score=90.24 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=114.0
Q ss_pred eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEE
Q 037368 59 GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLV 138 (823)
Q Consensus 59 ~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~ 138 (823)
...+|.+-|+.|.|+..+++|||+|+|.. ++||+++..-- ...|..++... +. +. +.|.|++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~---------~~~W~~de~~~----~k~~KPI~~~~-~~--H~-SNIF~L~F 113 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMH---------GRVWNVDELMV----RKTPKPIGVME-HP--HR-SNIFSLEF 113 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcce---------eeeechHHHHh----hcCCCCceecc-Cc--cc-cceEEEEE
Confidence 45589999999999999999999999998 99999874200 01232333221 11 11 34999999
Q ss_pred ecCCCCcceEEEEEeCCeEEEEEcccccccccceeE-EecC---CCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCC
Q 037368 139 LEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL-QVDN---QCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQP 213 (823)
Q Consensus 139 ~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~~~---~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~ 213 (823)
+-.... +.+|..+|+|++.+.. .+..+ +..+ .+.|.++.-+|.. .+++++++. .|.+||...+.
T Consensus 114 ~~~N~~---~~SG~~~~~VI~HDiE------t~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 114 DLENRF---LYSGERWGTVIKHDIE------TKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccCCee---EecCCCcceeEeeecc------cceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCC
Confidence 988888 9999999999998864 23332 2222 4689999999986 466666654 59999998654
Q ss_pred Cc--ceEEccCCCccceecccCCC-eE-EEee-CCeEEEEecCC
Q 037368 214 PK--RQFLDNIGCSTNSVAMSDRL-EL-IIGR-PEAVYFYEVDG 252 (823)
Q Consensus 214 ~~--~~~l~~~~~~~~~~~~s~~~-~l-iv~~-~~~I~i~~~~g 252 (823)
.+ ...+.+.+.....+-|.|.- .+ +++. .+++-+|+.+.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 22 22334566666777787733 34 3443 35889999864
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=7.4e-06 Score=93.15 Aligned_cols=218 Identities=11% Similarity=0.033 Sum_probs=122.9
Q ss_pred eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc
Q 037368 46 AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT 125 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~ 125 (823)
.|.++|.+|.-.+.+..+...+....|+|+|+.|+.++.++. . +. |.+||+.+. .+. .+..
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g-~-~~----L~~~dl~tg--------~~~---~lt~-- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENR-K-AE----IFVQDIYTQ--------VRE---KVTS-- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCC-C-cE----EEEEECCCC--------CeE---EecC--
Confidence 677778655544566667788999999999999988776531 1 12 888888742 221 1211
Q ss_pred CCCCCCceEEEEEecCCCCcceEEE-EEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC--
Q 037368 126 SQFPEAKITSFLVLEEAPPILLIAI-GLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-- 202 (823)
Q Consensus 126 ~~~p~~~v~~va~~~d~~~~~~ia~-G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-- 202 (823)
.+ ....+.+|+|||+. +|. ...+|...||..++ .+...+.+..+...++...|+|||+ .+++++..+
T Consensus 260 --~~-g~~~~~~wSPDG~~---La~~~~~~g~~~Iy~~dl---~tg~~~~lt~~~~~~~~p~wSpDG~-~I~f~s~~~g~ 329 (448)
T PRK04792 260 --FP-GINGAPRFSPDGKK---LALVLSKDGQPEIYVVDI---ATKALTRITRHRAIDTEPSWHPDGK-SLIFTSERGGK 329 (448)
T ss_pred --CC-CCcCCeeECCCCCE---EEEEEeCCCCeEEEEEEC---CCCCeEECccCCCCccceEECCCCC-EEEEEECCCCC
Confidence 11 11457899999998 775 45567655554332 1222333333344567889999995 455555432
Q ss_pred -eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-e-eC-C--eEEEEecCCCCccccccC---CeEEEEeeCcEE
Q 037368 203 -SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-G-RP-E--AVYFYEVDGRGPCWAFEG---EKKLLGWFRGYL 273 (823)
Q Consensus 203 -~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~-~~-~--~I~i~~~~g~~~~~~~~g---~~~~i~~~~~yl 273 (823)
.|+.+++.+.. . ..+...+......+|+|||+.++ + .. + .|+.++..+.......++ ..-.+++++.++
T Consensus 330 ~~Iy~~dl~~g~-~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I 407 (448)
T PRK04792 330 PQIYRVNLASGK-V-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMV 407 (448)
T ss_pred ceEEEEECCCCC-E-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEE
Confidence 37777776432 2 22222222223457899997553 2 22 2 456667654322111111 111355567777
Q ss_pred EEEEecCCCCccEEEEEeCCCCE
Q 037368 274 LCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 274 v~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+..+..+ ....+.+++..++.
T Consensus 408 ~~~~~~~--g~~~l~~~~~~G~~ 428 (448)
T PRK04792 408 IYSTTYQ--GKQVLAAVSIDGRF 428 (448)
T ss_pred EEEEecC--CceEEEEEECCCCc
Confidence 7665432 23457777776554
No 235
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=2.9e-06 Score=96.16 Aligned_cols=173 Identities=13% Similarity=0.047 Sum_probs=102.9
Q ss_pred CCEEEEEecC---CeEEEEc-CCCee--eEeEeecccceeEEEEecCCCEEEEEe-cCCCCcccccceeEEEE--eCCCC
Q 037368 35 RGKVVIGCDD---GAVSLLD-RGLKF--NFGFQAHSSSVLFLQQLKQRNFLVTVG-EDEQVSAQQSAVCLKVF--DLDKM 105 (823)
Q Consensus 35 ~~~l~~gs~d---G~i~~~d-~~~~~--~~~~~~H~~~V~~i~~~~~~~~l~s~s-~D~~~~~~~~~~~vkvW--dl~~~ 105 (823)
+..|++++.+ ..|++|| .+++. +..+.+| ...++|+|+|+.|+.++ .||. +.|| |+...
T Consensus 215 G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~---------~~Iy~~d~~~~ 282 (429)
T PRK01742 215 GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV---------LNIYVMGANGG 282 (429)
T ss_pred CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc---------EEEEEEECCCC
Confidence 3577776543 4799999 45542 3334444 44689999999888765 5665 5665 54421
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEE-eCCeEEEEEcccccccccceeEEecCCCCcce
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGL-DNGCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~-~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
. .+.+..+ . ..+.+.+|+|||+. +++++ .+|...+|+.+. .+...+.+ ...+ .+
T Consensus 283 --------~---~~~lt~~--~---~~~~~~~wSpDG~~---i~f~s~~~g~~~I~~~~~---~~~~~~~l-~~~~--~~ 337 (429)
T PRK01742 283 --------T---PSQLTSG--A---GNNTEPSWSPDGQS---ILFTSDRSGSPQVYRMSA---SGGGASLV-GGRG--YS 337 (429)
T ss_pred --------C---eEeeccC--C---CCcCCEEECCCCCE---EEEEECCCCCceEEEEEC---CCCCeEEe-cCCC--CC
Confidence 1 2222211 1 23788999999998 88766 468888987542 11222222 3232 46
Q ss_pred EEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe-e-CCeEEEEe
Q 037368 185 LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG-R-PEAVYFYE 249 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~-~-~~~I~i~~ 249 (823)
..|+|||+ .++.++.+++..||+.+.. . ..+... ......+|+|+|++++. + ++.+.+|.
T Consensus 338 ~~~SpDG~--~ia~~~~~~i~~~Dl~~g~-~-~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 338 AQISADGK--TLVMINGDNVVKQDLTSGS-T-EVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred ccCCCCCC--EEEEEcCCCEEEEECCCCC-e-EEecCC-CCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 78999995 4555555778889986542 2 222211 12345689999986653 3 34455443
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.55 E-value=2.9e-06 Score=86.19 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=85.7
Q ss_pred CCCeEEEeeCCC--EEE-EEecCCeEEEEc-CCCee--eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 25 SGNITCCSSGRG--KVV-IGCDDGAVSLLD-RGLKF--NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 25 ~~~is~~~~~~~--~l~-~gs~dG~i~~~d-~~~~~--~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
+..+.|.+...+ .|| =|-+-|.|.+.| ...+. .....||.+.|.|++..-+|..+||+|..|| + ||
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT----L----IR 207 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT----L----IR 207 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE----E----EE
Confidence 334555554433 443 356889999999 33222 3578999999999999999999999999998 3 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG 162 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~ 162 (823)
|||.... + .+..++-.. -+ +.|.|++|+||.+. +|+.+..|+|+++..
T Consensus 208 IFdt~~g--------~--~l~E~RRG~--d~-A~iy~iaFSp~~s~---LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 208 IFDTEDG--------T--LLQELRRGV--DR-ADIYCIAFSPNSSW---LAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEcCCC--------c--EeeeeecCC--ch-heEEEEEeCCCccE---EEEEcCCCeEEEEEe
Confidence 9998843 3 355555221 11 44999999999999 999999999999964
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=6.7e-06 Score=93.48 Aligned_cols=193 Identities=14% Similarity=0.042 Sum_probs=114.4
Q ss_pred CeEEEe-eCC-CEEEEEec---CCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEE
Q 037368 27 NITCCS-SGR-GKVVIGCD---DGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 27 ~is~~~-~~~-~~l~~gs~---dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkv 99 (823)
.+.+.. +++ +.|+..+. ++.|.+|| .+++. +.+..+.+.+....|+|+|+.|+ +.+.|+.. . |.+
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~---~----Iy~ 274 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT---D----IYT 274 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCc---e----EEE
Confidence 343333 333 46776653 46899999 45554 35666777888999999998765 66666641 1 666
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
||+... . + +.+. ... ...+..+|+||++. +|..+. +|...+|..++ .+...+.+...
T Consensus 275 ~d~~~~--------~--~-~~Lt--~~~---~~~~~~~~spDG~~---i~f~s~~~g~~~Iy~~d~---~g~~~~~lt~~ 332 (435)
T PRK05137 275 MDLRSG--------T--T-TRLT--DSP---AIDTSPSYSPDGSQ---IVFESDRSGSPQLYVMNA---DGSNPRRISFG 332 (435)
T ss_pred EECCCC--------c--e-EEcc--CCC---CccCceeEcCCCCE---EEEEECCCCCCeEEEEEC---CCCCeEEeecC
Confidence 787632 1 1 2222 111 22567899999998 888773 44434443222 12233334434
Q ss_pred CCCcceEEEeecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC-------CeEEE
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP-------EAVYF 247 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~-------~~I~i 247 (823)
.+.+....|+|||+ .++++.... .|.+|++.++. .+.+. .+.......|+|||+.++ .+. ..+++
T Consensus 333 ~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~--~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~ 408 (435)
T PRK05137 333 GGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG--ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYT 408 (435)
T ss_pred CCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc--eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEE
Confidence 55677889999995 445554332 48888876542 23343 223456678999998654 222 14666
Q ss_pred EecCCC
Q 037368 248 YEVDGR 253 (823)
Q Consensus 248 ~~~~g~ 253 (823)
++.+|.
T Consensus 409 ~dl~g~ 414 (435)
T PRK05137 409 VDLTGR 414 (435)
T ss_pred EECCCC
Confidence 666654
No 238
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.52 E-value=4.2e-07 Score=89.82 Aligned_cols=144 Identities=15% Similarity=0.177 Sum_probs=100.8
Q ss_pred EEEEEecCCeEEEEc-CCCe----------eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLK----------FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~----------~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
.++.|-.+|+|-+|| .++. .......|..+|.++.+.+.-+.=+++|.|.. +..|++...
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk---------l~~~Sl~~s 237 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK---------LVMYSLNHS 237 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc---------ceeeeeccc
Confidence 457889999999999 5553 33334469999999999876555566777766 888998753
Q ss_pred CCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceE
Q 037368 106 EPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGL 185 (823)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l 185 (823)
+++.+.-..+.+ +.|+ |..+.+-||++. +|+++-||.|++|.-. .....-++..+.+.|.++
T Consensus 238 ------~gslq~~~e~~l---knpG--v~gvrIRpD~KI---lATAGWD~RiRVyswr----tl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 238 ------TGSLQIRKEITL---KNPG--VSGVRIRPDGKI---LATAGWDHRIRVYSWR----TLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred ------cCcccccceEEe---cCCC--ccceEEccCCcE---EeecccCCcEEEEEec----cCCchhhhhhhhcceeEE
Confidence 122111111111 2342 888999999999 9999999999998642 112233444567889999
Q ss_pred EEeecCCeEEEEEEcC-CeEEEEEe
Q 037368 186 GFRVDGQALQLFAVTP-NSVILFSL 209 (823)
Q Consensus 186 ~fs~dg~~~~l~~~t~-~~V~~~d~ 209 (823)
+|+|+. .+++.++. .+|.+|++
T Consensus 300 Afspd~--~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDC--ELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCC--chhhhccCCceEEeeec
Confidence 999985 46776765 46999986
No 239
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.51 E-value=1.9e-06 Score=87.61 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=123.0
Q ss_pred CeEEEee--CCCEEEEEecCCeEEEEcC-C---CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 27 NITCCSS--GRGKVVIGCDDGAVSLLDR-G---LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 27 ~is~~~~--~~~~l~~gs~dG~i~~~d~-~---~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
.|+++.- ..+.|++|++|..-++|.. . ++++-.+.-|...++++.++|..+.+|++|.-.. |.||
T Consensus 57 ~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~---------isVc 127 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL---------ISVC 127 (361)
T ss_pred ceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccE---------EEEE
Confidence 3565554 4579999999999999983 3 3444456678899999999999999999998876 9999
Q ss_pred eCCCCCC--CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccc---c------c
Q 037368 101 DLDKMEP--EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARE---R------I 169 (823)
Q Consensus 101 dl~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~---~------~ 169 (823)
-++.... .+|-.+.| ++ +.|++++|+|+.-. +|.|+.||+.+++..-+ ++ + +
T Consensus 128 y~E~ENdWWVsKhikkP-----ir--------Stv~sldWhpnnVL---laaGs~D~k~rVfSayI-K~Vdekpap~pWg 190 (361)
T KOG1523|consen 128 YYEQENDWWVSKHIKKP-----IR--------STVTSLDWHPNNVL---LAAGSTDGKCRVFSAYI-KGVDEKPAPTPWG 190 (361)
T ss_pred EEecccceehhhhhCCc-----cc--------cceeeeeccCCcce---ecccccCcceeEEEEee-eccccCCCCCCCc
Confidence 9875321 01111111 11 33999999999999 99999999999986432 11 1 1
Q ss_pred ccee---EEec---CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCC
Q 037368 170 TRFK---LQVD---NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPE 243 (823)
Q Consensus 170 ~k~~---~~~~---~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~ 243 (823)
.|.. +..| ..+-|.++.|+++|. .+.+++.++.|.+-|-.+..+.........-+...+.|-.+.+++.++-+
T Consensus 191 sk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 191 SKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred cCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 1111 1111 357899999999995 34555566777777765432222222111134445555555555554433
No 240
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=9.3e-06 Score=92.20 Aligned_cols=185 Identities=12% Similarity=-0.004 Sum_probs=109.4
Q ss_pred CCEEEEEec---CCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCD---DGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~---dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
++.|++++. ...|.+|| .+++. ..+..+.+.+....|+|+|+.|+ +.+.++. +. |.+||+...
T Consensus 215 g~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~---~~----Iy~~d~~~g---- 282 (433)
T PRK04922 215 GKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGN---PE----IYVMDLGSR---- 282 (433)
T ss_pred CCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCC---ce----EEEEECCCC----
Confidence 347777663 34699999 44543 24455556666889999998764 5566653 11 889998742
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
. + +.+..+ . .....++|+||++. +++++. +|...+|..++ .+...+.+........+.+|+
T Consensus 283 ----~--~-~~lt~~--~---~~~~~~~~spDG~~---l~f~sd~~g~~~iy~~dl---~~g~~~~lt~~g~~~~~~~~S 344 (433)
T PRK04922 283 ----Q--L-TRLTNH--F---GIDTEPTWAPDGKS---IYFTSDRGGRPQIYRVAA---SGGSAERLTFQGNYNARASVS 344 (433)
T ss_pred ----C--e-EECccC--C---CCccceEECCCCCE---EEEEECCCCCceEEEEEC---CCCCeEEeecCCCCccCEEEC
Confidence 1 2 122211 1 12567899999998 888764 45655554332 112222232223345678999
Q ss_pred ecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC----CeEEEEecCCC
Q 037368 189 VDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP----EAVYFYEVDGR 253 (823)
Q Consensus 189 ~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~----~~I~i~~~~g~ 253 (823)
|||+ .++++...+ .|.+|++.+.. .+.+. ++.......|+|||++++ ++. ..|++++.+|+
T Consensus 345 pDG~-~Ia~~~~~~~~~~I~v~d~~~g~--~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 345 PDGK-KIAMVHGSGGQYRIAVMDLSTGS--VRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCC-EEEEEECCCCceeEEEEECCCCC--eEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9996 444444333 48999986542 23443 222233458999998654 322 25777777764
No 241
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.50 E-value=9e-06 Score=95.59 Aligned_cols=193 Identities=12% Similarity=0.115 Sum_probs=113.9
Q ss_pred CEEEEEecCCeEEEEc-CC--Ce-----eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RG--LK-----FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~--~~-----~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
.++++||.||+|++|+ +. ++ ..-++..-..+|.++...+.|+.+|.++.||. |++.+++....
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~---------v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS---------VRVLRIDHYNV 1132 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe---------EEEEEcccccc
Confidence 6889999999999999 32 22 12233334578999999899999999999997 99999885310
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEec-CCC-CcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCCCcce
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE-EAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQCSVMG 184 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~ 184 (823)
+ .-.+.+.+.... ..++..|..-++.. +++ . ++.++..|.|+.|+.-..++ .+. .-. ...|.||+
T Consensus 1133 --~-~~~~~~~ri~n~---~~~g~vv~m~a~~~~~~S~~---lvy~T~~~~iv~~D~r~~~~-~w~--lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1133 --S-KRVATQVRIPNL---KKDGVVVSMHAFTAIVQSHV---LVYATDLSRIVSWDTRMRHD-AWR--LKNQLRHGLVTS 1200 (1431)
T ss_pred --c-cceeeeeecccc---cCCCceEEeeccccccccee---EEEEEeccceEEecchhhhh-HHh--hhcCccccceeE
Confidence 0 001112222211 12212244444433 223 5 88899999999998632111 111 111 22688999
Q ss_pred EEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEEc-cCCCcccee--c-ccCCCeE-EEeeC---CeEEEEecCC
Q 037368 185 LGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFLD-NIGCSTNSV--A-MSDRLEL-IIGRP---EAVYFYEVDG 252 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l~-~~~~~~~~~--~-~s~~~~l-iv~~~---~~I~i~~~~g 252 (823)
++.++.+ ..++.+|.. .+.+||++=+. +...+. .+.++++.+ + +.|.... ++++. +-|-+|+.++
T Consensus 1201 i~idp~~--~WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1201 IVIDPWC--NWLVIGTSRGQLVLWDLRFRV-PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred EEecCCc--eEEEEecCCceEEEEEeecCc-eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 9999988 466666654 58899997543 222221 223444422 2 2233333 33322 4688898773
No 242
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.3e-06 Score=100.86 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=115.1
Q ss_pred eccccccc-CCCCCCCCcCCCCeEEEee---CCCEEEEEecCCeEEEEc-CC---CeeeEeEeecccc--eeEEEEecCC
Q 037368 7 FDFFEEKY-GGKSTIPEEVSGNITCCSS---GRGKVVIGCDDGAVSLLD-RG---LKFNFGFQAHSSS--VLFLQQLKQR 76 (823)
Q Consensus 7 f~ff~~~~-~~~~~~~~~~~~~is~~~~---~~~~l~~gs~dG~i~~~d-~~---~~~~~~~~~H~~~--V~~i~~~~~~ 76 (823)
...||.+. ....++|.....-|+++.. +++.++.|-.||.|++|| +. -..+..++.|+.. |..+.+-+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 34555544 1122344444444666654 347889999999999999 32 2356789999876 9999999877
Q ss_pred CE-EEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC
Q 037368 77 NF-LVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG 155 (823)
Q Consensus 77 ~~-l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG 155 (823)
-- |+|+|.||. |++||+.... ..++ + ++..+- .+ ++..+++.+|++... +|+|++ +
T Consensus 1269 ~~elvSgs~~G~---------I~~~DlR~~~-----~e~~--~-~iv~~~-~y-Gs~lTal~VH~hapi---iAsGs~-q 1325 (1387)
T KOG1517|consen 1269 LGELVSGSQDGD---------IQLLDLRMSS-----KETF--L-TIVAHW-EY-GSALTALTVHEHAPI---IASGSA-Q 1325 (1387)
T ss_pred CcceeeeccCCe---------EEEEecccCc-----cccc--c-eeeecc-cc-CccceeeeeccCCCe---eeecCc-c
Confidence 44 999999998 9999998621 0111 1 111110 01 123899999999999 999997 9
Q ss_pred eEEEEEcccccccccceeEE-------ecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecC
Q 037368 156 CIYCIKGDIARERITRFKLQ-------VDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQN 211 (823)
Q Consensus 156 ~V~l~~~~~~~~~~~k~~~~-------~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~ 211 (823)
.|.+|+.. |.+...+ -+..+++.+|+|+|-- -.+++++ ++.|.+|....
T Consensus 1326 ~ikIy~~~-----G~~l~~~k~n~~F~~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1326 LIKIYSLS-----GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred eEEEEecC-----hhhhcccccCcccccCcCCCcceeeecchh--HhhhhccCCceEEEeecCC
Confidence 99999742 1111111 1225788999999853 3455554 45688997653
No 243
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=1.2e-05 Score=91.00 Aligned_cols=185 Identities=12% Similarity=0.046 Sum_probs=108.6
Q ss_pred CEEEEEe---cCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEE-ecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGC---DDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTV-GEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs---~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~-s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
..|++.+ .+..|.+|+ .+++.. .+..+.+.+....|+|+|+.|+.+ +.++. +. |.+||+...
T Consensus 211 ~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~---~~----I~~~d~~tg----- 277 (429)
T PRK03629 211 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGS---LN----LYVMDLASG----- 277 (429)
T ss_pred CEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCC---cE----EEEEECCCC-----
Confidence 4676543 345789998 455432 333333445568999999988755 44443 11 888898742
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeC-CeEEEEEcccccccccceeEEecCCCCcceEEEee
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDN-GCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRV 189 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~d-G~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~ 189 (823)
. +. .+. ... ..+...+|+|||+. |+..+.. |...+|..++ .+...+.+......+....|+|
T Consensus 278 ---~--~~-~lt--~~~---~~~~~~~wSPDG~~---I~f~s~~~g~~~Iy~~d~---~~g~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 278 ---Q--IR-QVT--DGR---SNNTEPTWFPDSQN---LAYTSDQAGRPQVYKVNI---NGGAPQRITWEGSQNQDADVSS 340 (429)
T ss_pred ---C--EE-Ecc--CCC---CCcCceEECCCCCE---EEEEeCCCCCceEEEEEC---CCCCeEEeecCCCCccCEEECC
Confidence 1 21 111 111 23788999999998 8887754 5566775443 1222333333334567889999
Q ss_pred cCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-CC---eEEEEecCCCC
Q 037368 190 DGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-PE---AVYFYEVDGRG 254 (823)
Q Consensus 190 dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~~---~I~i~~~~g~~ 254 (823)
||+ .+++++..+ .|++||+.+.. ...+... .......|+|||+.++ ++ ++ .+++++++|+.
T Consensus 341 DG~-~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 341 DGK-FMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CCC-EEEEEEccCCCceEEEEECCCCC--eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 996 455555443 38889986542 2334322 1223467999998664 33 22 36777887654
No 244
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=4.6e-07 Score=64.74 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=36.9
Q ss_pred CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 54 LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 54 ~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
|+++++|++|+++|++|+++|++++|+|+|.|++ |+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~---------i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT---------IRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE---------EEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE---------EEEEC
Confidence 4678899999999999999999999999999998 99997
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=1.6e-05 Score=90.03 Aligned_cols=185 Identities=12% Similarity=0.037 Sum_probs=108.2
Q ss_pred CCEEEEEecC---CeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCDD---GAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~d---G~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
++.|++++.. ..|.+|| .+++.. .+....+.+....|+|+|+.|+ +.+.|+. ..||.++..
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~---------~~Iy~~d~~---- 272 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGN---------SQIYTVNAD---- 272 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCC---------ceEEEEECC----
Confidence 3577776532 4699999 556543 4544556777899999998876 5677775 667765421
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
.+. .+.+. ... ....+.+|+|||+. ++..+. +|...+|..++ .+.+.+.+........+.+|+
T Consensus 273 --~~~---~~~lt--~~~---~~~~~~~wSpDG~~---l~f~s~~~g~~~Iy~~~~---~~g~~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 273 --GSG---LRRLT--QSS---GIDTEPFFSPDGRS---IYFTSDRGGAPQIYRMPA---SGGAAQRVTFTGSYNTSPRIS 336 (427)
T ss_pred --CCC---cEECC--CCC---CCCcCeEEcCCCCE---EEEEecCCCCcEEEEEEC---CCCceEEEecCCCCcCceEEC
Confidence 111 12221 111 12567789999998 887664 46777776542 122222232222335578999
Q ss_pred ecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC--C--eEEEEecCCC
Q 037368 189 VDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP--E--AVYFYEVDGR 253 (823)
Q Consensus 189 ~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~--~--~I~i~~~~g~ 253 (823)
|||+ .+++++..+ .|++|++.+.. . +.+.. +......+|+|||+.++ ++. + .+++.+.+|+
T Consensus 337 pDG~-~Ia~~s~~~g~~~I~v~d~~~g~-~-~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 337 PDGK-LLAYISRVGGAFKLYVQDLATGQ-V-TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCCC-EEEEEEccCCcEEEEEEECCCCC-e-EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 9996 455555443 49999987542 2 23322 22234668999998654 332 2 3555555543
No 246
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=1.8e-06 Score=92.04 Aligned_cols=255 Identities=14% Similarity=0.158 Sum_probs=147.2
Q ss_pred eEEEeeC--CCEEEEEecCCeEEEEc-CCCeeeEeEe-ecccceeEEEEecC--CCEEEEEecCCCCcccccceeEEEEe
Q 037368 28 ITCCSSG--RGKVVIGCDDGAVSLLD-RGLKFNFGFQ-AHSSSVLFLQQLKQ--RNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 28 is~~~~~--~~~l~~gs~dG~i~~~d-~~~~~~~~~~-~H~~~V~~i~~~~~--~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
|+.+.+. +..|++|+.|..|.+|| ..++....|. +|...|-+..|.|. ..-++++|.||+ |++-.
T Consensus 145 VntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---------vr~s~ 215 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---------VRVSE 215 (559)
T ss_pred cceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc---------eeeee
Confidence 5555553 46889999999999999 6666555664 69999999999983 356999999998 77765
Q ss_pred CCCCC--CCCC--------------CCCCCce---------EEEEEeccCCCC----------CC---ceEEEEEecCCC
Q 037368 102 LDKME--PEGT--------------SSTSPDC---------IGILRVFTSQFP----------EA---KITSFLVLEEAP 143 (823)
Q Consensus 102 l~~~~--~~~~--------------~~~~~~~---------~~~~~~~~~~~p----------~~---~v~~va~~~d~~ 143 (823)
+.... +.++ ..++|.. +.++.+-. ..| .. ...++|.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-DVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc-CCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54211 0000 0011100 11111000 011 01 367788888654
Q ss_pred -CcceEEEEEeCCeEEEEEcccccccc-------cceeEEec-CCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCC-C
Q 037368 144 -PILLIAIGLDNGCIYCIKGDIARERI-------TRFKLQVD-NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQ-P 213 (823)
Q Consensus 144 -~~~~ia~G~~dG~V~l~~~~~~~~~~-------~k~~~~~~-~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~-~ 213 (823)
. +|+|+.|--+++|++.-+.... ..++.+.+ ..--||++.|+.+|. .+|++-++..|+++.-.-+ +
T Consensus 295 ~~---faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NE---FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS-ELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cc---cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc-ceeeeecccceEEeccccccC
Confidence 6 9999999999999753111100 01122222 244699999998774 4566667778999954311 1
Q ss_pred -----------CcceEEccCCC--ccceecc-cCCCeEEEeeC--CeEEEEecCCCCccccccCCeEE---EEeeCcEEE
Q 037368 214 -----------PKRQFLDNIGC--STNSVAM-SDRLELIIGRP--EAVYFYEVDGRGPCWAFEGEKKL---LGWFRGYLL 274 (823)
Q Consensus 214 -----------~~~~~l~~~~~--~~~~~~~-s~~~~liv~~~--~~I~i~~~~g~~~~~~~~g~~~~---i~~~~~ylv 274 (823)
..+++..+|.. .+.++.| -|...|++++. +.|.||+-.+.......+|.... |-++...=|
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 01223444432 3445544 48888988766 47999986643333344554322 333322212
Q ss_pred EEEecCCCCccEEEEEeCCCCEEEE
Q 037368 275 CVIADQRNSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 275 ~~s~d~~~~~~~I~I~D~~~~~i~~ 299 (823)
+++. +-+.-|+||.+.+....+
T Consensus 451 LAsS---Gid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 451 LASS---GIDHDVKIWTPLTAERAT 472 (559)
T ss_pred hhcc---CCccceeeecCCcccccc
Confidence 2221 146789999986654443
No 247
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.37 E-value=0.0015 Score=72.75 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=54.7
Q ss_pred CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEe
Q 037368 131 AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSL 209 (823)
Q Consensus 131 ~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~ 209 (823)
+.|.|+|++|+-.. ++.|+.||+|++|+.. ++ ........-..+-++|+|+| .+++++++ +.+.+||+
T Consensus 260 s~v~~ca~sp~E~k---LvlGC~DgSiiLyD~~----~~--~t~~~ka~~~P~~iaWHp~g--ai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDK---LVLGCEDGSIILYDTT----RG--VTLLAKAEFIPTLIAWHPDG--AIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccce---EEEEecCCeEEEEEcC----CC--eeeeeeecccceEEEEcCCC--cEEEEEcCCceEEEEEe
Confidence 34999999999999 9999999999999863 21 12222334567899999999 57777776 56999998
Q ss_pred cCC
Q 037368 210 QNQ 212 (823)
Q Consensus 210 ~~~ 212 (823)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 654
No 248
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.35 E-value=9.1e-07 Score=95.31 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=91.4
Q ss_pred CCeEEEee--C-CCEEEEEecCCeEEEEcCC---------------Cee--eEeEee------------cccceeEEEEe
Q 037368 26 GNITCCSS--G-RGKVVIGCDDGAVSLLDRG---------------LKF--NFGFQA------------HSSSVLFLQQL 73 (823)
Q Consensus 26 ~~is~~~~--~-~~~l~~gs~dG~i~~~d~~---------------~~~--~~~~~~------------H~~~V~~i~~~ 73 (823)
..++|+.- + ++.++.+-.+|.+.+||.. +.. +.+.+. -++.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 34666653 2 3566777889999999521 110 112222 23578999999
Q ss_pred cCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe
Q 037368 74 KQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD 153 (823)
Q Consensus 74 ~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~ 153 (823)
|||++||++|.||. +||+|+.+.+ ++..++ .+= +...||+|+|||++ ||+|+.
T Consensus 300 ~DG~~LA~VSqDGf---------LRvF~fdt~e----------Llg~mk----SYF-GGLLCvcWSPDGKy---IvtGGE 352 (636)
T KOG2394|consen 300 PDGKYLATVSQDGF---------LRIFDFDTQE----------LLGVMK----SYF-GGLLCVCWSPDGKY---IVTGGE 352 (636)
T ss_pred CCCceEEEEecCce---------EEEeeccHHH----------HHHHHH----hhc-cceEEEEEcCCccE---EEecCC
Confidence 99999999999997 9999998643 222222 111 23899999999999 999999
Q ss_pred CCeEEEEEcccccccccceeEE-ecCCCCcceEEEee
Q 037368 154 NGCIYCIKGDIARERITRFKLQ-VDNQCSVMGLGFRV 189 (823)
Q Consensus 154 dG~V~l~~~~~~~~~~~k~~~~-~~~~~~It~l~fs~ 189 (823)
|.-|.+|.-. + .|.... ..++..|..++|.|
T Consensus 353 DDLVtVwSf~---e--rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 353 DDLVTVWSFE---E--RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEec---c--ceEEEeccccccceeeEeecc
Confidence 9999999742 1 121111 24588999999986
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=0.00014 Score=79.56 Aligned_cols=259 Identities=14% Similarity=0.134 Sum_probs=140.8
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEE-----EecCCCCcccccceeEEEEe
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVT-----VGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s-----~s~D~~~~~~~~~~~vkvWd 101 (823)
.+++.++++.++.-+.++.+.|++ .++..+-+... ..+.++.|+|.|++|.| .-.|+++.+|- +++|+
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn----~~v~~ 111 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN----VLVYN 111 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCc----eeeee
Confidence 455556677777777888999999 55544333332 28899999999999875 44555555555 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS 181 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~ 181 (823)
+.+. +.+. .+... . +.-++..|++|-+ +|+=..++.|++|+..-.+....| ++ ...
T Consensus 112 vet~-----------~~~s-~~q~k-~--Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~k---l~--~~~ 167 (566)
T KOG2315|consen 112 VETG-----------VQRS-QIQKK-M--QNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQHK---LS--VSG 167 (566)
T ss_pred eccc-----------eehh-heehh-h--hcCcccccccchh----hhhhhhcceEEEEecCCccceeee---ee--ccc
Confidence 9852 1111 00100 0 1135666776643 333344667777764210000000 00 112
Q ss_pred cceEE----------------------------------------------------EeecCCeEEEEEEcC--------
Q 037368 182 VMGLG----------------------------------------------------FRVDGQALQLFAVTP-------- 201 (823)
Q Consensus 182 It~l~----------------------------------------------------fs~dg~~~~l~~~t~-------- 201 (823)
|+.+. |+..|+..++.+.++
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 22222 222232211222210
Q ss_pred ---CeEEEEEecCCCCcceEEccCCCccceecccCCCe-EEEeeC---CeEEEEecCCCCccccc-cCCe--EEEEeeCc
Q 037368 202 ---NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLE-LIIGRP---EAVYFYEVDGRGPCWAF-EGEK--KLLGWFRG 271 (823)
Q Consensus 202 ---~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~-liv~~~---~~I~i~~~~g~~~~~~~-~g~~--~~i~~~~~ 271 (823)
..++++++.+.. ..+--....++.+++|+|+|+ |+|+.+ -.+-||+.+|.. .+.| +|+. ....++|+
T Consensus 248 YGEq~Lyll~t~g~s--~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 248 YGEQTLYLLATQGES--VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VFDFPEGPRNTAFFNPHGN 324 (566)
T ss_pred cccceEEEEEecCce--EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eEeCCCCCccceEECCCCC
Confidence 124444444211 111112245778889998774 777655 478888888653 3444 4553 34566888
Q ss_pred EEEEEEecCCCCccEEEEEeCCCCEEEEeccc-cceeEEEeecCcEEEEEc
Q 037368 272 YLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV-KEVSHMLCEWGNIILVMT 321 (823)
Q Consensus 272 ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i-~~v~~v~~~~~~~~vvs~ 321 (823)
+++++.... -.|.+.|||+.++...-+... ....+-++++|..|+.++
T Consensus 325 ii~lAGFGN--L~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 325 IILLAGFGN--LPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred EEEEeecCC--CCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEe
Confidence 888876432 368999999988543332222 234445778887766654
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=4.4e-06 Score=90.14 Aligned_cols=166 Identities=13% Similarity=0.176 Sum_probs=107.1
Q ss_pred cCCCC-eEEEee--CCCEEEEEecCCeEEEEc-CCCeeeEeE-eecccceeEEEEec--CCCEEEEEecCCCCcccccce
Q 037368 23 EVSGN-ITCCSS--GRGKVVIGCDDGAVSLLD-RGLKFNFGF-QAHSSSVLFLQQLK--QRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 23 ~~~~~-is~~~~--~~~~l~~gs~dG~i~~~d-~~~~~~~~~-~~H~~~V~~i~~~~--~~~~l~s~s~D~~~~~~~~~~ 95 (823)
.++.. |+|..- .+..|++||.|-.+.||| -..+++.+. .+|.+.|-++.|.| ...+++||+.|..
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~-------- 118 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL-------- 118 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce--------
Confidence 44444 688775 456899999999999999 556666666 47999999999998 4567899999987
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccc-ccee
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERI-TRFK 173 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~-~k~~ 173 (823)
|+++|++..... .+.+.+. .++..+. ..-.+|..+|..|++ .. +-+++.||+++-++. |+.. +++.
T Consensus 119 -i~lfdl~~~~~~-~~d~~~~--~~~~~~~--cht~rVKria~~p~~Pht---fwsasEDGtirQyDi---REph~c~p~ 186 (758)
T KOG1310|consen 119 -IKLFDLDSSKEG-GMDHGME--ETTRCWS--CHTDRVKRIATAPNGPHT---FWSASEDGTIRQYDI---REPHVCNPD 186 (758)
T ss_pred -EEEEeccccccc-ccccCcc--chhhhhh--hhhhhhhheecCCCCCce---EEEecCCcceeeecc---cCCccCCcc
Confidence 999999863210 0111111 0111110 000238889999988 66 888899999998875 2211 1111
Q ss_pred -----EEecC---CCCcceEEEeecCCeEEEEEEcCCe-EEEEEe
Q 037368 174 -----LQVDN---QCSVMGLGFRVDGQALQLFAVTPNS-VILFSL 209 (823)
Q Consensus 174 -----~~~~~---~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~ 209 (823)
.+.+. --...++..+|... +.|+++..+- .++||.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDR 230 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhh
Confidence 01111 11344677777654 5667666554 789994
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.34 E-value=7e-05 Score=82.55 Aligned_cols=180 Identities=10% Similarity=0.127 Sum_probs=110.2
Q ss_pred EEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCce
Q 037368 39 VIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDC 117 (823)
Q Consensus 39 ~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~ 117 (823)
++-..+|.|.+.| .+.+.+.++......-..+.++|+|+++..++.||. |.++|+.+. +.
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~---------vsviD~~~~----------~~ 70 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT---------VSVIDLATG----------KV 70 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE---------EEEEETTSS----------SE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe---------EEEEECCcc----------cE
Confidence 4556789999999 678888888876544455778999999999999987 999999853 37
Q ss_pred EEEEEeccCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEec-------CCCCcceEEEee
Q 037368 118 IGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVD-------NQCSVMGLGFRV 189 (823)
Q Consensus 118 ~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~-------~~~~It~l~fs~ 189 (823)
+++++.. .....+++++||++ ++++ ...++|.++|..- ....+.+.. .+..+.+|..++
T Consensus 71 v~~i~~G------~~~~~i~~s~DG~~---~~v~n~~~~~v~v~D~~t----le~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 71 VATIKVG------GNPRGIAVSPDGKY---VYVANYEPGTVSVIDAET----LEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp EEEEE-S------SEEEEEEE--TTTE---EEEEEEETTEEEEEETTT------EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred EEEEecC------CCcceEEEcCCCCE---EEEEecCCCceeEecccc----ccceeecccccccccccCCCceeEEecC
Confidence 7788754 22789999999998 7766 4689999998631 111222211 134677888777
Q ss_pred cCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeE-EEee--CCeEEEEecC
Q 037368 190 DGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLEL-IIGR--PEAVYFYEVD 251 (823)
Q Consensus 190 dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~l-iv~~--~~~I~i~~~~ 251 (823)
... ..++..-+ ++|.+.|......+.......+..+.-..|+|++++ +++. ++.|-+++.+
T Consensus 138 ~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 138 GRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp SSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred CCC-EEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 663 34444444 568777765432222222234455566788899874 4432 3566666654
No 252
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=4.1e-06 Score=95.56 Aligned_cols=160 Identities=20% Similarity=0.229 Sum_probs=112.4
Q ss_pred cCCCCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCC----cccccceeE
Q 037368 23 EVSGNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQV----SAQQSAVCL 97 (823)
Q Consensus 23 ~~~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~----~~~~~~~~v 97 (823)
.+.++|+.++..+..++.|+..|+|.+-| .+.+.+++|.+|++.|..+.+ .|+.|+|||..+.- ..|+ |
T Consensus 175 v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~F----v 248 (1118)
T KOG1275|consen 175 VSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPF----V 248 (1118)
T ss_pred ccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccch----h
Confidence 34456888989999999999999999999 778999999999999999987 78999999976531 1467 9
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV- 176 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~- 176 (823)
|||||+.... -.| + ++| ....-+.|+|.... .+|+.+..|...+.+.--. ..+...+..
T Consensus 249 kVYDLRmmra-----l~P-----I-----~~~-~~P~flrf~Psl~t--~~~V~S~sGq~q~vd~~~l--sNP~~~~~~v 308 (1118)
T KOG1275|consen 249 KVYDLRMMRA-----LSP-----I-----QFP-YGPQFLRFHPSLTT--RLAVTSQSGQFQFVDTATL--SNPPAGVKMV 308 (1118)
T ss_pred hhhhhhhhhc-----cCC-----c-----ccc-cCchhhhhcccccc--eEEEEecccceeecccccc--CCCccceeEE
Confidence 9999985421 011 1 122 11456778887643 2788888999998873210 112222222
Q ss_pred cCCC-CcceEEEeecCCeEEEEEEcC-CeEEEEEec
Q 037368 177 DNQC-SVMGLGFRVDGQALQLFAVTP-NSVILFSLQ 210 (823)
Q Consensus 177 ~~~~-~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~ 210 (823)
...+ -|+++.++++| ..++.+.. +.|-+|.-.
T Consensus 309 ~p~~s~i~~fDiSsn~--~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 309 NPNGSGISAFDISSNG--DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ccCCCcceeEEecCCC--ceEEEecccCcEeeecCC
Confidence 2233 39999999998 46666654 558899743
No 253
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=98.32 E-value=7.5e-06 Score=76.90 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=81.4
Q ss_pred eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc----eeEEE-eecCcEEEEEcCCeEEEEee-cChHHH
Q 037368 263 KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE----VSHML-CEWGNIILVMTDKSVLCIGE-KDMESK 336 (823)
Q Consensus 263 ~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~----v~~v~-~~~~~~~vvs~~~~v~~l~~-~~~~~~ 336 (823)
+..++-..-|++++..+ .|.+...-++.+++...+.. +..+. ....+.|++.++..|+++.. ...++.
T Consensus 36 p~si~lT~~H~llL~~~------~l~~vn~L~~~vV~e~~~~~~~~~~~gl~~D~~~~t~W~ys~~~I~ei~i~~E~r~v 109 (147)
T PF05131_consen 36 PLSIALTEFHLLLLYSD------RLIAVNRLNNKVVFEESLLETGGKILGLCRDPSSNTFWLYSSNSIFEIVINNEDRDV 109 (147)
T ss_pred cceEEeeceeeeEEeCC------EEEEEEecCCcEEEEEEeccCCcceeeEEEcCCCCeEEEEeCCeeEEEEcCcchHHH
Confidence 45566666788888653 78888887877777665432 44442 23445777777788999965 555888
Q ss_pred HHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccC
Q 037368 337 LDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSK 377 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k 377 (823)
|+.++++++|++|+++|+.. +..++.|..++|++||+|
T Consensus 110 Wk~yl~~~~fd~Al~~~~~~---~~~~d~V~~~qa~~lf~k 147 (147)
T PF05131_consen 110 WKIYLDKGDFDEALQYCKTN---PAQRDQVLIKQADHLFQK 147 (147)
T ss_pred HHHHHhcCcHHHHHHHccCC---HHHHHHHHHHHHHHHhhC
Confidence 99999999999999999764 778999999999999976
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00011 Score=83.02 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=120.3
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCE--EE-EEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEE
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNF--LV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGIL 121 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~--l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~ 121 (823)
+.|.+.|.+|.-.+.+..+...+..=.|+|+|+. ++ +.-.++. + - |-+.++... ....+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~--~-~----I~~~~l~~g--------~~~~l--- 226 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGV--P-K----IFLGSLENP--------AGKKI--- 226 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCC--c-e----EEEEECCCC--------CceEe---
Confidence 4677888665544456666667778899999975 32 3333332 2 2 666777642 22222
Q ss_pred EeccCCCCCCceEEEEEecCCCCcceEEEEEe-CC--eEEE--EEcccccccccceeEEecC-CCCcceEEEeecCCeEE
Q 037368 122 RVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NG--CIYC--IKGDIARERITRFKLQVDN-QCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 122 ~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG--~V~l--~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg~~~~ 195 (823)
..+ + +.....+|+|||+. ||..+. +| .+.+ |+.. .....+.+.+... .+.+++.+|+|||+ .+
T Consensus 227 t~~----~-g~~~~p~wSPDG~~---Laf~s~~~g~~di~~~~~~~~--~g~~g~~~~lt~~~~~~~~~p~wSPDG~-~L 295 (428)
T PRK01029 227 LAL----Q-GNQLMPTFSPRKKL---LAFISDRYGNPDLFIQSFSLE--TGAIGKPRRLLNEAFGTQGNPSFSPDGT-RL 295 (428)
T ss_pred ecC----C-CCccceEECCCCCE---EEEEECCCCCcceeEEEeecc--cCCCCcceEeecCCCCCcCCeEECCCCC-EE
Confidence 211 1 11556799999998 887653 23 3333 3321 1111223333433 24457889999995 45
Q ss_pred EEEEcC-C--eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC----CeEEEEecCCCCcc-ccc-cCCeE-
Q 037368 196 LFAVTP-N--SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP----EAVYFYEVDGRGPC-WAF-EGEKK- 264 (823)
Q Consensus 196 l~~~t~-~--~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~----~~I~i~~~~g~~~~-~~~-~g~~~- 264 (823)
++++.. + .|+++++.+.+.....+...+.......|||||+.++ ... ..|++|++.+.... +.- .+...
T Consensus 296 af~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~ 375 (428)
T PRK01029 296 VFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKES 375 (428)
T ss_pred EEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccc
Confidence 565543 3 2555555432222344433334445678999998553 321 36899998754321 111 11222
Q ss_pred -EEEeeCcEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 265 -LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 265 -~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
..++++.+|+..+... ....|.++|+.++.
T Consensus 376 p~wSpDG~~L~f~~~~~--g~~~L~~vdl~~g~ 406 (428)
T PRK01029 376 PSWAIDSLHLVYSAGNS--NESELYLISLITKK 406 (428)
T ss_pred eEECCCCCEEEEEECCC--CCceEEEEECCCCC
Confidence 2344567777655331 34678888887653
No 255
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=3.1e-05 Score=79.61 Aligned_cols=172 Identities=12% Similarity=0.212 Sum_probs=106.4
Q ss_pred EEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec--CCCCcceEEEEEeCCeEEEEEcccccccccceeE
Q 037368 97 LKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE--EAPPILLIAIGLDNGCIYCIKGDIARERITRFKL 174 (823)
Q Consensus 97 vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~--d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~ 174 (823)
|+++|..+. ..++.++. .| ..+.-++|.. .+.. +.+++.||+|++|+.. .++...++
T Consensus 52 v~lyd~~tg----------~~l~~fk~----~~-~~~N~vrf~~~ds~h~---v~s~ssDG~Vr~wD~R---s~~e~a~~ 110 (376)
T KOG1188|consen 52 VRLYDKGTG----------QLLEEFKG----PP-ATTNGVRFISCDSPHG---VISCSSDGTVRLWDIR---SQAESARI 110 (376)
T ss_pred EEEEeccch----------hhhheecC----CC-CcccceEEecCCCCCe---eEEeccCCeEEEEEee---cchhhhhe
Confidence 999998852 23444442 22 3366677755 3446 8888999999999863 23333333
Q ss_pred EecCC--CCcceEEEeecCCeEEEEEEcCC-----eEEEEEecCCCCcceE-EccCCCccceecccCCC--eEEEee-CC
Q 037368 175 QVDNQ--CSVMGLGFRVDGQALQLFAVTPN-----SVILFSLQNQPPKRQF-LDNIGCSTNSVAMSDRL--ELIIGR-PE 243 (823)
Q Consensus 175 ~~~~~--~~It~l~fs~dg~~~~l~~~t~~-----~V~~~d~~~~~~~~~~-l~~~~~~~~~~~~s~~~--~liv~~-~~ 243 (823)
.+... .|-.+++..-.+ .++++++.. .|.+||.+..+++... .+.|...++++.|-|.+ .++.|+ |+
T Consensus 111 ~~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred eccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence 34332 355555543233 466666532 4999999876654444 46788899999998844 455665 45
Q ss_pred eEEEEecCCCCc---c---ccccCCeEEEEeeCc---EEEEEEecCCCCccEEEEEeCCCCE
Q 037368 244 AVYFYEVDGRGP---C---WAFEGEKKLLGWFRG---YLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 244 ~I~i~~~~g~~~---~---~~~~g~~~~i~~~~~---ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
-|.+||+++... . +........+.|.++ .+.+++. ..+..+|+++.+.
T Consensus 189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH-----~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH-----METFAIYELEDGS 245 (376)
T ss_pred eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc-----cCceeEEEccCCC
Confidence 788999875421 1 111222446777653 4777764 4789999997644
No 256
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.29 E-value=3.8e-07 Score=102.52 Aligned_cols=118 Identities=13% Similarity=0.194 Sum_probs=92.4
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
++.+.+|...|.|+.|+..|.+++|+|+|.. ||||+.+. ..|+.+++.+. +.++.+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~l---------vKiwS~et----------~~~lAs~rGhs-----~ditdl 238 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRL---------VKIWSMET----------ARCLASCRGHS-----GDITDL 238 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccce---------eeeeeccc----------hhhhccCCCCc-----cccchh
Confidence 3456689999999999999999999999997 99999763 24777776442 449999
Q ss_pred EEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEec
Q 037368 137 LVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 137 a~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
|++.+... +|+|+-|.-|++|+.. .+....++.++.+.||+|+|+|-. ....++.+.+||-+
T Consensus 239 avs~~n~~---iaaaS~D~vIrvWrl~----~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 239 AVSSNNTM---IAAASNDKVIRVWRLP----DGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ccchhhhh---hhhcccCceEEEEecC----CCchHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 99988778 9999999999999752 233344567789999999999853 22335668999865
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=0.00027 Score=77.38 Aligned_cols=229 Identities=12% Similarity=0.176 Sum_probs=129.2
Q ss_pred cCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC--CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEE
Q 037368 43 DDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR--NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIG 119 (823)
Q Consensus 43 ~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~--~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~ 119 (823)
..+.|++|+ .+++.+ .-+-|...|+...++|.+ ..+|+=--...|.|.. ||||...-.. .+.+...+
T Consensus 144 v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~----vri~~~~~~~-----~~~~~a~k 213 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS----VRIYKYPEEG-----QHQPVANK 213 (566)
T ss_pred hcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE----EEEecccccc-----ccchhhhc
Confidence 456789998 333322 334467889999999863 4565533333344555 9999886211 11221122
Q ss_pred EEEeccCCCCCCceEEEEEecCCCCcceEEEEEe---------CCeEEEEEcccccccccceeEEecCCCCcceEEEeec
Q 037368 120 ILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD---------NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVD 190 (823)
Q Consensus 120 ~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~---------dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~d 190 (823)
++ |..+ =-.+.|.+-|+-.+.+|+.-. ..+++++..+ +....+-...++||.++.|+++
T Consensus 214 sF--Fkad-----kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----g~s~~V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 214 SF--FKAD-----KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----GESVSVPLLKEGPVHDVTWSPS 281 (566)
T ss_pred cc--cccc-----eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----CceEEEecCCCCCceEEEECCC
Confidence 21 1000 112333443332222333333 3455655432 2222232345899999999999
Q ss_pred CCeEEEEEE-cCCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-C---CeEEEEecCCCCccccccCC-e
Q 037368 191 GQALQLFAV-TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-P---EAVYFYEVDGRGPCWAFEGE-K 263 (823)
Q Consensus 191 g~~~~l~~~-t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-~---~~I~i~~~~g~~~~~~~~g~-~ 263 (823)
|+...++-+ ....|.+||++++ -+++-...+-+++-|+|.|.+++ ++ + +.|-+||+..+...-.++.. .
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~~----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t 357 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRGK----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT 357 (566)
T ss_pred CCEEEEEEecccceEEEEcCCCC----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc
Confidence 853211111 3568999999864 33432334567899999998654 43 2 67999998754322233332 2
Q ss_pred EE--EEeeCcEEEEEEecCCC-CccEEEEEeCCCCEE
Q 037368 264 KL--LGWFRGYLLCVIADQRN-SKNIFNVYDLKNRLI 297 (823)
Q Consensus 264 ~~--i~~~~~ylv~~s~d~~~-~~~~I~I~D~~~~~i 297 (823)
+. .+++|.|+++++..++. -|..++||+..+..+
T Consensus 358 t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 358 TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 33 34478899998765432 367899999887665
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.26 E-value=5.1e-06 Score=96.42 Aligned_cols=141 Identities=12% Similarity=0.189 Sum_probs=103.5
Q ss_pred EEEEEecCCeEEEEcCC--CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLDRG--LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d~~--~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
++++|+.-|.|.+|+.. ..+. ...+|.+.|-.|.++.+|.+++|+|+|.+ +|+|+++..+.
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRs---------iRlW~i~s~~~------- 209 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRS---------IRLWPIDSREV------- 209 (967)
T ss_pred EEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcc---------eeeeecccccc-------
Confidence 78999999999999933 3333 58899999999999999999999999998 99999996431
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC-CCCcceEEEeecCCe
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDGQA 193 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg~~ 193 (823)
+.| ..|+ ++ ++|+.+.|+|+ . +++++.|-+.++|+.+ +.-..++.++ ..-|.++...++..
T Consensus 210 ~~~----~~fg--Hs-aRvw~~~~~~n--~---i~t~gedctcrvW~~~-----~~~l~~y~~h~g~~iw~~~~~~~~~- 271 (967)
T KOG0974|consen 210 LGC----TGFG--HS-ARVWACCFLPN--R---IITVGEDCTCRVWGVN-----GTQLEVYDEHSGKGIWKIAVPIGVI- 271 (967)
T ss_pred cCc----cccc--cc-ceeEEEEeccc--e---eEEeccceEEEEEecc-----cceehhhhhhhhcceeEEEEcCCce-
Confidence 111 1232 33 55999999998 7 9999999999999543 1112223333 34588888766541
Q ss_pred EEEEEEcCCeEEEEEecCC
Q 037368 194 LQLFAVTPNSVILFSLQNQ 212 (823)
Q Consensus 194 ~~l~~~t~~~V~~~d~~~~ 212 (823)
..+.++.++++++|++.++
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeeccCcchhhhhhhcc
Confidence 3344446678999998654
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.24 E-value=0.014 Score=71.92 Aligned_cols=269 Identities=12% Similarity=0.143 Sum_probs=130.2
Q ss_pred ccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec-----cCCCCCCceEEEEE
Q 037368 64 SSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF-----TSQFPEAKITSFLV 138 (823)
Q Consensus 64 ~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~~v~~va~ 138 (823)
..+|.+++|++++..++....||+ |.+|....... .....|.....+... ....+...+..++|
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~---------l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGS---------LSIYEWDLKNM--WSVKPPKLLSSISLDSMDISDSELPLGSLRQLAW 494 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCC---------EEEEEecCCCc--ccccCcchhhhcccccccccccccccccEEEEEE
Confidence 478999999999988999999998 88888653221 001122221111110 00111134788888
Q ss_pred ecCCCCcceEEEEEeC---CeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCc
Q 037368 139 LEEAPPILLIAIGLDN---GCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPK 215 (823)
Q Consensus 139 ~~d~~~~~~ia~G~~d---G~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~ 215 (823)
..+... +++...+ +.+.+++..-... ...........+++..+...++.. ..++-..+++|..++..+....
T Consensus 495 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~~~G~v~~~~~~~~~~~ 569 (928)
T PF04762_consen 495 LNDDTL---LVLSDSDSNQSKIVLVDIDDSEN-SASVESSTEVDGVVLIISSSPDSG-SLYIQTNDGKVFQLSSDGELSQ 569 (928)
T ss_pred eCCCEE---EEEEecCcccceEEEEEeccCCC-ceeEEEEeccCceEEEEeeCCCCc-EEEEEECCCEEEEeecCCCccc
Confidence 877654 4544443 4566665421000 111222233455665655554431 1344444566776655443211
Q ss_pred ceEEccCCCccceecccCCC---eEEEeeCCeEEEEecCCCCccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeC
Q 037368 216 RQFLDNIGCSTNSVAMSDRL---ELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDL 292 (823)
Q Consensus 216 ~~~l~~~~~~~~~~~~s~~~---~liv~~~~~I~i~~~~g~~~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~ 292 (823)
...|+. .|.--.++..++. ..++|-++.-++| ++++. +....+++..++.||+..+. .+.++.+++
T Consensus 570 ~~~fp~-~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly-~n~~~----la~~~tSF~v~~~~Ll~TT~-----~h~l~fv~L 638 (928)
T PF04762_consen 570 IVKFPQ-PCPWMEVCQINGSEDKRVLFGLSSNGRLY-ANSRL----LASNCTSFAVTDSFLLFTTT-----QHTLKFVHL 638 (928)
T ss_pred cccCCC-CCcEEEEEEECCccceeEEEEECCCCEEE-ECCEE----EecCCceEEEEcCEEEEEec-----CceEEEEEC
Confidence 111211 1111111111222 2444433322222 12111 11224456667889888774 367888887
Q ss_pred CCCEEEE----eccc---c-ceeEE---------EeecCcEEEEEcCCeEEEEeecCh-HHHHHHHHHhccHHHHHHHHH
Q 037368 293 KNRLIAH----SLVV---K-EVSHM---------LCEWGNIILVMTDKSVLCIGEKDM-ESKLDMLFKKNLYTVAINLVQ 354 (823)
Q Consensus 293 ~~~~i~~----~~~i---~-~v~~v---------~~~~~~~~vvs~~~~v~~l~~~~~-~~~i~~L~~~~~f~~Al~la~ 354 (823)
....-.+ .... . .++.+ .+....+++=++.|.+=.+.|+.+ =..+.-++++++|.+|+.+|+
T Consensus 639 ~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~R 718 (928)
T PF04762_consen 639 NSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCR 718 (928)
T ss_pred cCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHH
Confidence 7211100 0000 0 02221 111112222234444444445444 345888899999999999999
Q ss_pred hcCCC
Q 037368 355 SQQAD 359 (823)
Q Consensus 355 ~~~~~ 359 (823)
++.++
T Consensus 719 khRId 723 (928)
T PF04762_consen 719 KHRID 723 (928)
T ss_pred Hhccc
Confidence 97654
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.22 E-value=0.0014 Score=71.97 Aligned_cols=257 Identities=13% Similarity=0.145 Sum_probs=144.6
Q ss_pred EEEEecC----CeEEEEc---CCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCC--CCcccccceeEEEEeCCCCCC
Q 037368 38 VVIGCDD----GAVSLLD---RGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDE--QVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 38 l~~gs~d----G~i~~~d---~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~--~~~~~~~~~~vkvWdl~~~~~ 107 (823)
+++|+.. +.|.+|+ .++++...-. .-...-..++++|++++|.++.+.+ .+. |..|.+...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~-------v~~~~i~~~-- 72 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGG-------VSSYRIDPD-- 72 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTE-------EEEEEEETT--
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCC-------EEEEEECCC--
Confidence 5677766 7888887 4455432111 2335678899999999999998853 111 777777642
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEE-eCCeEEEEEcccccccccceeEE-ecC-------
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGL-DNGCIYCIKGDIARERITRFKLQ-VDN------- 178 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~-~dG~V~l~~~~~~~~~~~k~~~~-~~~------- 178 (823)
+++...+.+.... . .....++++|+++. +.++. .+|+|.+++.+---.......++ +++
T Consensus 73 ----~g~L~~~~~~~~~--g---~~p~~i~~~~~g~~---l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r 140 (345)
T PF10282_consen 73 ----TGTLTLLNSVPSG--G---SSPCHIAVDPDGRF---LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR 140 (345)
T ss_dssp ----TTEEEEEEEEEES--S---SCEEEEEECTTSSE---EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT
T ss_pred ----cceeEEeeeeccC--C---CCcEEEEEecCCCE---EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccc
Confidence 1222223333321 1 22678999999987 76664 58999999754100001111112 111
Q ss_pred --CCCcceEEEeecCCeEEEEEEc--CCeEEEEEecCCC-Ccc--eEE-ccCCCccceecccCCCeEE-Eee--CCeEEE
Q 037368 179 --QCSVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQP-PKR--QFL-DNIGCSTNSVAMSDRLELI-IGR--PEAVYF 247 (823)
Q Consensus 179 --~~~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~-~~~--~~l-~~~~~~~~~~~~s~~~~li-v~~--~~~I~i 247 (823)
..-..++.|+|+|+ .++++. .+.|++|+++... ... ..+ -..|+.++-+.|+|+++++ +.. ++.|.+
T Consensus 141 q~~~h~H~v~~~pdg~--~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGR--FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TSSTCEEEEEE-TTSS--EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccceeEEECCCCC--EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 22356899999994 677764 4579999997543 121 112 2457778889999998754 443 468888
Q ss_pred EecC-CCCcc--------c--cccCC--e--EEEEeeCcEEEEEEecCCCCccEEEEEeCC--CCEEEEecccc----ce
Q 037368 248 YEVD-GRGPC--------W--AFEGE--K--KLLGWFRGYLLCVIADQRNSKNIFNVYDLK--NRLIAHSLVVK----EV 306 (823)
Q Consensus 248 ~~~~-g~~~~--------~--~~~g~--~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~--~~~i~~~~~i~----~v 306 (823)
|+.. ..+.. . .+.+. . ..+++++.+|.+... ...+|.+|++. ++.+..-..++ ..
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr----~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR----GSNSISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC----TTTEEEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec----cCCEEEEEEEecCCCceEEEEEEeCCCCCc
Confidence 8776 22211 0 12222 2 245566888877654 35789999983 33333222221 14
Q ss_pred eEE-EeecCcEEEEEc
Q 037368 307 SHM-LCEWGNIILVMT 321 (823)
Q Consensus 307 ~~v-~~~~~~~~vvs~ 321 (823)
+++ ++++|..++++.
T Consensus 295 r~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVAN 310 (345)
T ss_dssp EEEEE-TTSSEEEEEE
T ss_pred cEEEEeCCCCEEEEEe
Confidence 554 667777655553
No 261
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=1.9e-05 Score=82.42 Aligned_cols=155 Identities=12% Similarity=0.097 Sum_probs=110.1
Q ss_pred CCCeEEEeeC---CCEEEEEecC--CeEEEEcCCCeeeEeEeecc---------c--ceeEEEEecC--CCEEEEEecCC
Q 037368 25 SGNITCCSSG---RGKVVIGCDD--GAVSLLDRGLKFNFGFQAHS---------S--SVLFLQQLKQ--RNFLVTVGEDE 86 (823)
Q Consensus 25 ~~~is~~~~~---~~~l~~gs~d--G~i~~~d~~~~~~~~~~~H~---------~--~V~~i~~~~~--~~~l~s~s~D~ 86 (823)
++++..+--+ +..+++|+.. ..+.+||.+.. .+.|.|-. - .++.+.|.+. ...||||.--+
T Consensus 148 g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h 226 (412)
T KOG3881|consen 148 GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH 226 (412)
T ss_pred CCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence 4455444432 2466789988 88999994333 44677632 1 3578899887 78899999888
Q ss_pred CCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccc
Q 037368 87 QVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIAR 166 (823)
Q Consensus 87 ~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~ 166 (823)
. ||+||...+. .| +..+... ..| +++++..|+++. |.+|..-|.+..||.
T Consensus 227 q---------vR~YDt~~qR-------RP--V~~fd~~--E~~---is~~~l~p~gn~---Iy~gn~~g~l~~FD~---- 276 (412)
T KOG3881|consen 227 Q---------VRLYDTRHQR-------RP--VAQFDFL--ENP---ISSTGLTPSGNF---IYTGNTKGQLAKFDL---- 276 (412)
T ss_pred e---------EEEecCcccC-------cc--eeEeccc--cCc---ceeeeecCCCcE---EEEecccchhheecc----
Confidence 7 9999998543 34 3344322 345 999999999999 999999999999986
Q ss_pred ccccceeEE-e-cCCCCcceEEEeecCCeEEEEEEcCCe-EEEEEecCCC
Q 037368 167 ERITRFKLQ-V-DNQCSVMGLGFRVDGQALQLFAVTPNS-VILFSLQNQP 213 (823)
Q Consensus 167 ~~~~k~~~~-~-~~~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~~~~~ 213 (823)
++.|.... + ...|.|++|+-.|.+ .+++.+.-++ |+++|+.++.
T Consensus 277 -r~~kl~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 277 -RGGKLLGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred -cCceeeccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccch
Confidence 23332221 2 337899999998876 4677776665 9999998754
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.21 E-value=0.00015 Score=82.01 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=105.9
Q ss_pred CCEEEEEecC---CeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCDD---GAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~d---G~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
+++|++++.. ..|++|+ .+++.. .+..+.+.+..++|+|+|+.|+ +.+.++. +. |.+||+....
T Consensus 201 g~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~---~~----i~~~d~~~~~--- 269 (417)
T TIGR02800 201 GQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGN---PD----IYVMDLDGKQ--- 269 (417)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCC---cc----EEEEECCCCC---
Confidence 3567766543 4799999 455443 4555667778899999998765 5555543 11 8888887421
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
...+..+ ... ....+|+||++. ++.++. +|...+|..++ .+.+.+.+......+....|+
T Consensus 270 --------~~~l~~~--~~~---~~~~~~s~dg~~---l~~~s~~~g~~~iy~~d~---~~~~~~~l~~~~~~~~~~~~s 330 (417)
T TIGR02800 270 --------LTRLTNG--PGI---DTEPSWSPDGKS---IAFTSDRGGSPQIYMMDA---DGGEVRRLTFRGGYNASPSWS 330 (417)
T ss_pred --------EEECCCC--CCC---CCCEEECCCCCE---EEEEECCCCCceEEEEEC---CCCCEEEeecCCCCccCeEEC
Confidence 1122111 112 456789999998 887664 34434443322 122333333344567888999
Q ss_pred ecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC----CeEEEEecCCC
Q 037368 189 VDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP----EAVYFYEVDGR 253 (823)
Q Consensus 189 ~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~----~~I~i~~~~g~ 253 (823)
|+|+ .+++...+. .|.+|++.++ ..+.+...+ ......|+|+|+.++ +.. ..+++.+.+|+
T Consensus 331 pdg~-~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 331 PDGD-LIAFVHREGGGFNIAVMDLDGG--GERVLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CCCC-EEEEEEccCCceEEEEEeCCCC--CeEEccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 9985 444444443 5888888653 233333222 223457889887543 322 13555555543
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.0018 Score=67.71 Aligned_cols=255 Identities=12% Similarity=0.139 Sum_probs=146.7
Q ss_pred EEEEec----CCeEEEEc---CCCeeeE-eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 38 VVIGCD----DGAVSLLD---RGLKFNF-GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 38 l~~gs~----dG~i~~~d---~~~~~~~-~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
+++||. ++-|++|+ .+|++.- ..-++.+.++-|.++|+++.|.++..+|. .+- |-.+.++..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~gg-----vaay~iD~~---- 74 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGG-----VAAYRIDPD---- 74 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCc-----EEEEEEcCC----
Confidence 455543 46688888 3444321 23357789999999999999999876631 000 777777642
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeE--EecCCC------
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKL--QVDNQC------ 180 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~--~~~~~~------ 180 (823)
.|....+.... ....| .+-|+++++++. +.++ ...|.|.++... +.+.-... ...+.+
T Consensus 75 --~G~Lt~ln~~~--~~g~~---p~yvsvd~~g~~---vf~AnY~~g~v~v~p~~---~dG~l~~~v~~~~h~g~~p~~r 141 (346)
T COG2706 75 --DGRLTFLNRQT--LPGSP---PCYVSVDEDGRF---VFVANYHSGSVSVYPLQ---ADGSLQPVVQVVKHTGSGPHER 141 (346)
T ss_pred --CCeEEEeeccc--cCCCC---CeEEEECCCCCE---EEEEEccCceEEEEEcc---cCCccccceeeeecCCCCCCcc
Confidence 12211111111 01223 688999999987 6666 446888888642 11211111 111222
Q ss_pred ---C-cceEEEeecCCeEEEEEEc--CCeEEEEEecCCC-Ccce-EEccCCCccceecccCCCeEE-Ee--eCCeEEEEe
Q 037368 181 ---S-VMGLGFRVDGQALQLFAVT--PNSVILFSLQNQP-PKRQ-FLDNIGCSTNSVAMSDRLELI-IG--RPEAVYFYE 249 (823)
Q Consensus 181 ---~-It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~-~~~~-~l~~~~~~~~~~~~s~~~~li-v~--~~~~I~i~~ 249 (823)
| +....|.|++ ..|+++. .++|.+|+++... .+.. ..-..|+.++-+.|.|+++++ +. -+++|-+|.
T Consensus 142 Q~~~h~H~a~~tP~~--~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~ 219 (346)
T COG2706 142 QESPHVHSANFTPDG--RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE 219 (346)
T ss_pred ccCCccceeeeCCCC--CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEE
Confidence 2 7888999998 4677665 4679999987432 1111 111467778889999999976 33 357899988
Q ss_pred cCCC-Ccc----------ccccCCe----EEEEeeCcEEEEEEecCCCCccEEEEEeC--CCCEEEEeccccc----eeE
Q 037368 250 VDGR-GPC----------WAFEGEK----KLLGWFRGYLLCVIADQRNSKNIFNVYDL--KNRLIAHSLVVKE----VSH 308 (823)
Q Consensus 250 ~~g~-~~~----------~~~~g~~----~~i~~~~~ylv~~s~d~~~~~~~I~I~D~--~~~~i~~~~~i~~----v~~ 308 (823)
.++. +.. -.|.|.. ..|+.+|.||.+.-. ....|.++-+ .++.+.+....+. .++
T Consensus 220 y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR----g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~ 295 (346)
T COG2706 220 YNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR----GHDSIAVFSVDPDGGKLELVGITPTEGQFPRD 295 (346)
T ss_pred EcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC----CCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc
Confidence 7653 210 1244442 346677888876532 1236666644 4454444332221 333
Q ss_pred E-EeecCcEEEEEc
Q 037368 309 M-LCEWGNIILVMT 321 (823)
Q Consensus 309 v-~~~~~~~~vvs~ 321 (823)
. +...+++++++.
T Consensus 296 F~i~~~g~~Liaa~ 309 (346)
T COG2706 296 FNINPSGRFLIAAN 309 (346)
T ss_pred ceeCCCCCEEEEEc
Confidence 3 666676666654
No 264
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.18 E-value=9.6e-05 Score=81.30 Aligned_cols=186 Identities=10% Similarity=0.127 Sum_probs=119.8
Q ss_pred CCEEEEEecCCeEEEEc-CCCeeeEeEee--c-ccceeEEEEe------c-------------CCCEEEEEecCCCCccc
Q 037368 35 RGKVVIGCDDGAVSLLD-RGLKFNFGFQA--H-SSSVLFLQQL------K-------------QRNFLVTVGEDEQVSAQ 91 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~~~~~~~~~--H-~~~V~~i~~~------~-------------~~~~l~s~s~D~~~~~~ 91 (823)
..++|..+.||.+++|+ ..+++-..|.+ | ++.-++..|. | .+..++..|..+- .
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g-~-- 81 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG-S-- 81 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc-c--
Confidence 35789999999999999 66666556654 3 2333333331 1 2233333333321 1
Q ss_pred ccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccc
Q 037368 92 QSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITR 171 (823)
Q Consensus 92 ~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k 171 (823)
|-++++... .....+.... ++ +.|.++..+.+..+ |-++++|+.|..|.... ..-
T Consensus 82 -----v~~ys~~~g----------~it~~~st~~--h~-~~v~~~~~~~~~~c---iyS~~ad~~v~~~~~~~----~~~ 136 (541)
T KOG4547|consen 82 -----VLLYSVAGG----------EITAKLSTDK--HY-GNVNEILDAQRLGC---IYSVGADLKVVYILEKE----KVI 136 (541)
T ss_pred -----EEEEEecCC----------eEEEEEecCC--CC-CcceeeecccccCc---eEecCCceeEEEEeccc----cee
Confidence 666666532 2333333222 22 44999999999888 99999999999997531 111
Q ss_pred eeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccCC-----CeEEEeeC---C
Q 037368 172 FKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDR-----LELIIGRP---E 243 (823)
Q Consensus 172 ~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~-----~~liv~~~---~ 243 (823)
.+.+...+..+-++..+|||+ ++. +...+|.+|+++++. ....|++|+.+++|+.|.-+ |.++.+++ .
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~--~l~-~as~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGK--ILL-TASRQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeeccCCCccceEEEcCCCC--EEE-eccceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 233445577799999999984 444 344789999998763 67788999999999887643 55544332 4
Q ss_pred eEEEEecCC
Q 037368 244 AVYFYEVDG 252 (823)
Q Consensus 244 ~I~i~~~~g 252 (823)
.|-+|.+++
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 677787664
No 265
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.13 E-value=0.0016 Score=66.89 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=57.4
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
.|.....+|.|.+|+ .+-+-......-.+++..++++|+| .+|.|..-|-. |.||++.+..
T Consensus 63 ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lr---------iTVWSL~t~~-------- 125 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR---------ITVWSLNTQK-------- 125 (447)
T ss_pred eeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeE---------EEEEEeccce--------
Confidence 456778999999999 3333222455556889999999999 45566666765 9999998531
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEE
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGL 152 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~ 152 (823)
+. -+ ++|-..+..++|+|||+. .|+.+
T Consensus 126 --~~-~~-----~~pK~~~kg~~f~~dg~f---~ai~s 152 (447)
T KOG4497|consen 126 --GY-LL-----PHPKTNVKGYAFHPDGQF---CAILS 152 (447)
T ss_pred --eE-Ee-----cccccCceeEEECCCCce---eeeee
Confidence 11 11 122223677777887775 55443
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.00026 Score=79.41 Aligned_cols=204 Identities=15% Similarity=0.221 Sum_probs=91.6
Q ss_pred CCEEEEEecCCeEEEEcC-CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEE-eCCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLDR-GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF-DLDKMEPEGTSS 112 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~-~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW-dl~~~~~~~~~~ 112 (823)
+.++++ ..+|.-.++.. ..... . .+.-...+|++. +.+|+....++ |+|+ ++...
T Consensus 44 gr~v~V-~g~geY~iyt~~~~r~k-~----~G~g~~~vw~~~-n~yAv~~~~~~---------I~I~kn~~~~------- 100 (443)
T PF04053_consen 44 GRFVLV-CGDGEYEIYTALAWRNK-A----FGSGLSFVWSSR-NRYAVLESSST---------IKIYKNFKNE------- 100 (443)
T ss_dssp SSEEEE-EETTEEEEEETTTTEEE-E----EEE-SEEEE-TS-SEEEEE-TTS----------EEEEETTEE--------
T ss_pred CCEEEE-EcCCEEEEEEccCCccc-c----cCceeEEEEecC-ccEEEEECCCe---------EEEEEcCccc-------
Confidence 345555 56888888873 33322 2 244555778874 45666666665 8885 44311
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC-CCCcceEEEeecC
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDG 191 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg 191 (823)
.++.++. +++ +..+-- |.. +++.+ ++.|.+||.. .+ +++..- -.+|..+.|+++|
T Consensus 101 ----~~k~i~~---~~~---~~~If~---G~L---L~~~~-~~~i~~yDw~----~~---~~i~~i~v~~vk~V~Ws~~g 156 (443)
T PF04053_consen 101 ----VVKSIKL---PFS---VEKIFG---GNL---LGVKS-SDFICFYDWE----TG---KLIRRIDVSAVKYVIWSDDG 156 (443)
T ss_dssp ----TT--------SS----EEEEE----SSS---EEEEE-TTEEEEE-TT----T-----EEEEESS-E-EEEEE-TTS
T ss_pred ----cceEEcC---Ccc---cceEEc---CcE---EEEEC-CCCEEEEEhh----Hc---ceeeEEecCCCcEEEEECCC
Confidence 0112221 111 333322 667 76664 6689999863 11 222221 2349999999998
Q ss_pred CeEEEEEEcCCeEEEEEecCC--------C--CcceEEccCCCccceecccCCCeEEEeeCCeEEEEecCCCCccccccC
Q 037368 192 QALQLFAVTPNSVILFSLQNQ--------P--PKRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYFYEVDGRGPCWAFEG 261 (823)
Q Consensus 192 ~~~~l~~~t~~~V~~~d~~~~--------~--~~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i~~~~g~~~~~~~~g 261 (823)
..++.++++.+++++.+.. + .....+......+.+.+| .+.+.+|....+ ..+-..|
T Consensus 157 --~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W----------~~d~fiYtT~~~-lkYl~~G 223 (443)
T PF04053_consen 157 --ELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCW----------VEDCFIYTTSNH-LKYLVNG 223 (443)
T ss_dssp --SEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEE----------ETTEEEEE-TTE-EEEEETT
T ss_pred --CEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEE----------EcCEEEEEcCCe-EEEEEcC
Confidence 4777788888888775422 0 011111111223333333 333555554431 1232334
Q ss_pred CeEEEEeeC--cEEEEEEecCCCCccEEEEEeCCCCEEEEecc
Q 037368 262 EKKLLGWFR--GYLLCVIADQRNSKNIFNVYDLKNRLIAHSLV 302 (823)
Q Consensus 262 ~~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~ 302 (823)
....+.... -|++...+ ..+.|.+.|-+.+.+.+.-.
T Consensus 224 e~~~i~~ld~~~yllgy~~----~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 224 ETGIIAHLDKPLYLLGYLP----KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEEEE-SS--EEEEEET----TTTEEEEE-TT--EEEEE--
T ss_pred CcceEEEcCCceEEEEEEc----cCCEEEEEECCCCEEEEEEC
Confidence 433344432 36666554 23577777777776666443
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00022 Score=80.60 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=107.9
Q ss_pred EEecCC--eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecC-CCCcccccceeEEEEeCCCCCCCCCCCCCCc
Q 037368 40 IGCDDG--AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGED-EQVSAQQSAVCLKVFDLDKMEPEGTSSTSPD 116 (823)
Q Consensus 40 ~gs~dG--~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D-~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~ 116 (823)
+...+| .|.+.+..+...+.+....+......|+|||+.|+.+++. |. ..+.+.+|++.... .+.+
T Consensus 204 ~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~-----~di~~~~~~~~~g~-----~g~~- 272 (428)
T PRK01029 204 VSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGN-----PDLFIQSFSLETGA-----IGKP- 272 (428)
T ss_pred EEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCC-----cceeEEEeecccCC-----CCcc-
Confidence 444444 5677773333233444455566678999999998877643 32 12236668776321 1122
Q ss_pred eEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEE
Q 037368 117 CIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 117 ~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~ 195 (823)
.+... . .. ......+|+|||+. ||..+. +|...+|..++.. .+...+.+......+....|+|||+ .+
T Consensus 273 -~~lt~--~-~~--~~~~~p~wSPDG~~---Laf~s~~~g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~-~L 341 (428)
T PRK01029 273 -RRLLN--E-AF--GTQGNPSFSPDGTR---LVFVSNKDGRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGK-KI 341 (428)
T ss_pred -eEeec--C-CC--CCcCCeEECCCCCE---EEEEECCCCCceEEEEECcc-cccceEEeccCCCCccceeECCCCC-EE
Confidence 11111 1 11 11467899999998 887763 6766676543211 1122333433445778899999996 45
Q ss_pred EEEEcC---CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee----CCeEEEEecCCC
Q 037368 196 LFAVTP---NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR----PEAVYFYEVDGR 253 (823)
Q Consensus 196 l~~~t~---~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~----~~~I~i~~~~g~ 253 (823)
++++.. ..|++||+.+.. .+.+...........|+|||+.++ .. ...|+++++++.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~--~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGR--DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCC--eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 555543 258999987643 233332223445678999997543 22 136788887654
No 268
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.00037 Score=76.32 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=142.1
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecc-cce-eEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHS-SSV-LFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~-~~V-~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
.+++|+.--.|++|| .+..+ .|.-|. +.| ..+-.+.|-.-++-.-.|.+ |-+..-..
T Consensus 66 ~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~---------IefHak~G--------- 125 (703)
T KOG2321|consen 66 LLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRT---------IEFHAKYG--------- 125 (703)
T ss_pred EEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCce---------eeehhhcC---------
Confidence 358999999999999 55544 476674 444 44444444444555666665 65544321
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCC
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQ 192 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~ 192 (823)
. ..++++. .+ ...++++. ... +.+|.....|+-++.+ +|.-..-+....++++.+..++..
T Consensus 126 ~---hy~~RIP---~~---GRDm~y~~~scD----ly~~gsg~evYRlNLE----qGrfL~P~~~~~~~lN~v~in~~h- 187 (703)
T KOG2321|consen 126 R---HYRTRIP---KF---GRDMKYHKPSCD----LYLVGSGSEVYRLNLE----QGRFLNPFETDSGELNVVSINEEH- 187 (703)
T ss_pred e---eeeeecC---cC---CccccccCCCcc----EEEeecCcceEEEEcc----ccccccccccccccceeeeecCcc-
Confidence 1 1122321 11 33444442 222 3344435566555432 221111111224788999888875
Q ss_pred eEEEEEEc-CCeEEEEEecCCCCcceEEc------cC-----CCccceecccCCCe-EEEeeC-CeEEEEecCCCCcccc
Q 037368 193 ALQLFAVT-PNSVILFSLQNQPPKRQFLD------NI-----GCSTNSVAMSDRLE-LIIGRP-EAVYFYEVDGRGPCWA 258 (823)
Q Consensus 193 ~~~l~~~t-~~~V~~~d~~~~~~~~~~l~------~~-----~~~~~~~~~s~~~~-liv~~~-~~I~i~~~~g~~~~~~ 258 (823)
.+|++++ ++.|-.||.+.+... .+++ .+ ...|..+.|+.+|- ++||.. +.|+|||++.+.+.+.
T Consensus 188 -gLla~Gt~~g~VEfwDpR~ksrv-~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 188 -GLLACGTEDGVVEFWDPRDKSRV-GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred -ceEEecccCceEEEecchhhhhh-eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 4677777 456999998876522 2221 11 12367788888774 777754 6899999987766432
Q ss_pred ----ccCCeEEEEeeCc--EEEEEEecCCCCccEEEEEeCCCCEEEEe----ccccceeEEEeecCcEEEEEcCC-e--E
Q 037368 259 ----FEGEKKLLGWFRG--YLLCVIADQRNSKNIFNVYDLKNRLIAHS----LVVKEVSHMLCEWGNIILVMTDK-S--V 325 (823)
Q Consensus 259 ----~~g~~~~i~~~~~--ylv~~s~d~~~~~~~I~I~D~~~~~i~~~----~~i~~v~~v~~~~~~~~vvs~~~-~--v 325 (823)
.+.+...+.|... .-.+++. ....++|||..++...-+ ..+..+ ++.+.+++++++.++ . .
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~----Dk~~~kiWd~~~Gk~~asiEpt~~lND~--C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSM----DKRILKIWDECTGKPMASIEPTSDLNDF--CFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cccCCccceeeecccccCCCceEEec----chHHhhhcccccCCceeeccccCCcCce--eeecCCceEEEecCCCccee
Confidence 2233455666322 2222333 246899999977653322 223333 244566777776554 2 3
Q ss_pred EEEeecChHHHHHHHHH
Q 037368 326 LCIGEKDMESKLDMLFK 342 (823)
Q Consensus 326 ~~l~~~~~~~~i~~L~~ 342 (823)
|.+......-+|--.++
T Consensus 340 yyiP~LGPaPrWCSfLd 356 (703)
T KOG2321|consen 340 YYIPSLGPAPRWCSFLD 356 (703)
T ss_pred EEccccCCCchhhhHHH
Confidence 44444555555555444
No 269
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0078 Score=68.91 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=112.0
Q ss_pred hcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC
Q 037368 472 AANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDILLRLCTEDGES 551 (823)
Q Consensus 472 ~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~~~~~ll~~~~~~~~~~ 551 (823)
+=|+.++|+.|+.+.+.|+..-..+ ...|.|++|++.-..-+.-+.....++|++-|=...- ++-.++.+-..
T Consensus 812 eLgMlEeA~~lYr~ckR~DLlNKly-Qs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D---i~~AleyyEK~--- 884 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYDLLNKLY-QSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD---IEAALEYYEKA--- 884 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc---HHHHHHHHHhc---
Confidence 5578888888888877776644444 4448999999988876665666677888865543321 22222322111
Q ss_pred cccCCCCCcccCCCCCHHHHHhhhccCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHH---hccccccCCcccccCcccc
Q 037368 552 TKRGASSSTYMSMLPSPVDFLNIFVHHPESLMDFLEKYTNKVKDSPAQVEIHNTLLEL---YLSYDLNFPSISQLNDGVD 628 (823)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llel---yl~~~~~~~~~~~~~~~~~ 628 (823)
....-.+..++.++|..+..|.... .+ + +|+.. ||+. .
T Consensus 885 -------------~~hafev~rmL~e~p~~~e~Yv~~~----~d----~----~L~~WWgqYlES---~----------- 925 (1416)
T KOG3617|consen 885 -------------GVHAFEVFRMLKEYPKQIEQYVRRK----RD----E----SLYSWWGQYLES---V----------- 925 (1416)
T ss_pred -------------CChHHHHHHHHHhChHHHHHHHHhc----cc----h----HHHHHHHHHHhc---c-----------
Confidence 1223456677777887777766542 11 1 22222 3332 0
Q ss_pred cccccCCCCCCcccCCccccCCCCCCCCcchHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHH---HH
Q 037368 629 LRLRSGSGLPKAEYNGEVTADGKDTYKGKDVLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLY---LY 705 (823)
Q Consensus 629 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~---L~ 705 (823)
| +.+.--....++.++...-.- ....=..++|-+|..+.+=..+|-+ .|
T Consensus 926 ---------------G----------emdaAl~~Y~~A~D~fs~VrI---~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 926 ---------------G----------EMDAALSFYSSAKDYFSMVRI---KCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ---------------c----------chHHHHHHHHHhhhhhhheee---EeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 0 000000011222222211000 0001125678888887776665544 46
Q ss_pred HHhccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcchHH
Q 037368 706 EKLKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPSLWV 747 (823)
Q Consensus 706 ~k~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~Lw~ 747 (823)
+--|...+|+..+....-+..||..|++++-+ ..||.
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~-----d~L~n 1014 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK-----DRLAN 1014 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHH
Confidence 66788889999999987788899999997643 45775
No 270
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.08 E-value=0.00011 Score=85.58 Aligned_cols=145 Identities=13% Similarity=0.072 Sum_probs=97.8
Q ss_pred EEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCC
Q 037368 136 FLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPP 214 (823)
Q Consensus 136 va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~ 214 (823)
+-++++--+ +|+|+.-|.|++|+... ..+...+..+++.|-++.|+.|| ..+++++++ .+++|++++...
T Consensus 139 ~g~s~~~~~---i~~gsv~~~iivW~~~~----dn~p~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 139 IGDSAEELY---IASGSVFGEIIVWKPHE----DNKPIRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccCcEEE---EEeccccccEEEEeccc----cCCcceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccc
Confidence 344555445 99999999999998641 12222355678999999999999 467777766 599999987654
Q ss_pred cceEEccCCCccceecccCCCeEEEeeCC-eEEEEecCCCCccccccCC----eEEEE-eeCcEEEEEEecCCCCccEEE
Q 037368 215 KRQFLDNIGCSTNSVAMSDRLELIIGRPE-AVYFYEVDGRGPCWAFEGE----KKLLG-WFRGYLLCVIADQRNSKNIFN 288 (823)
Q Consensus 215 ~~~~l~~~~~~~~~~~~s~~~~liv~~~~-~I~i~~~~g~~~~~~~~g~----~~~i~-~~~~ylv~~s~d~~~~~~~I~ 288 (823)
...+.=+|.+.+..+++.|. .+++++.| +.++|+.++..-. ++++| ...+. ..+..++.... .|++++
T Consensus 210 ~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g----~Ds~lk 283 (967)
T KOG0974|consen 210 LGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGG----NDSTLK 283 (967)
T ss_pred cCcccccccceeEEEEeccc-eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeec----cCcchh
Confidence 33233367788887888888 77777766 7889987754322 44544 22232 23344443333 578999
Q ss_pred EEeCCCC
Q 037368 289 VYDLKNR 295 (823)
Q Consensus 289 I~D~~~~ 295 (823)
+||+.++
T Consensus 284 ~~~l~~r 290 (967)
T KOG0974|consen 284 LWDLNGR 290 (967)
T ss_pred hhhhhcc
Confidence 9998764
No 271
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.00042 Score=78.70 Aligned_cols=185 Identities=11% Similarity=0.049 Sum_probs=103.3
Q ss_pred CCEEEEEecC---CeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCDD---GAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~d---G~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
++.|+..+.+ ..|.+|+ .+++.. .+....+.+....|+|+|+.|+ +.+.++. +. |.+||+...
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~---~~----Iy~~d~~~~---- 277 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGN---PE----IYVMDLASR---- 277 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCC---ce----EEEEECCCC----
Confidence 4577665433 3688888 445432 3444445566789999998876 5555553 11 778888742
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
. . +.+. ... ......+|+||++. ++..+. +|...+|..++ .+.+.+.+...........|+
T Consensus 278 ----~--~-~~lt--~~~---~~~~~~~~spDg~~---i~f~s~~~g~~~iy~~d~---~~g~~~~lt~~~~~~~~~~~S 339 (430)
T PRK00178 278 ----Q--L-SRVT--NHP---AIDTEPFWGKDGRT---LYFTSDRGGKPQIYKVNV---NGGRAERVTFVGNYNARPRLS 339 (430)
T ss_pred ----C--e-EEcc--cCC---CCcCCeEECCCCCE---EEEEECCCCCceEEEEEC---CCCCEEEeecCCCCccceEEC
Confidence 1 1 1221 111 22566789999998 887764 34444443332 112222222222334567899
Q ss_pred ecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-eeC----CeEEEEecCCC
Q 037368 189 VDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GRP----EAVYFYEVDGR 253 (823)
Q Consensus 189 ~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~----~~I~i~~~~g~ 253 (823)
|||+ .++++...+ .|.+||+.+.. .+.+...+ ......|+|||+.++ +.. ..+++++.+|+
T Consensus 340 pdg~-~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 340 ADGK-TLVMVHRQDGNFHVAAQDLQRGS--VRILTDTS-LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CCCC-EEEEEEccCCceEEEEEECCCCC--EEEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9996 445554433 38888887542 23343221 122457899998654 221 24666777654
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00027 Score=77.82 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=103.5
Q ss_pred CEEEEEecCCeEEEEc-CCCeeeEeEe--ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD-RGLKFNFGFQ--AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d-~~~~~~~~~~--~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
..++.|+..|.|-+|+ ..|++...+. .|.++|+++....+-.+|-|+|.|.. +-.|+....
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~---------v~~~~~~~~------- 134 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK---------VVYILEKEK------- 134 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee---------EEEEecccc-------
Confidence 3679999999999999 7788877776 49999999998888889999999998 999998732
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeec--
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVD-- 190 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~d-- 190 (823)
+.++.+.-+ + ..+.+++++||+.. +++| .+.|.+|+.. .....+.+..+.+||.+++|..+
T Consensus 135 ------~~~~~~~~~-~-~~~~sl~is~D~~~---l~~a--s~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 135 ------VIIRIWKEQ-K-PLVSSLCISPDGKI---LLTA--SRQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLID 197 (541)
T ss_pred ------eeeeeeccC-C-CccceEEEcCCCCE---EEec--cceEEEEEcc----CceEEEEecCCCcceEEEEEEEecc
Confidence 122333111 1 23899999999988 8876 6899999863 12223334456899999999776
Q ss_pred ---CCeEEEEEEc-CCeEEEEEecC
Q 037368 191 ---GQALQLFAVT-PNSVILFSLQN 211 (823)
Q Consensus 191 ---g~~~~l~~~t-~~~V~~~d~~~ 211 (823)
|. ++|..+. ...+.+|-++.
T Consensus 198 g~~G~-~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 198 GIIGK-YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccc-eeeeccccccceeEEEEEc
Confidence 43 3443333 23577888765
No 273
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.03 E-value=8.1e-06 Score=88.17 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
..+||+-+.||.++|+| .+.+++..++.+=+...|++|+|||++++|+|+|.- |.||++...
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL---------VtVwSf~er-------- 364 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL---------VTVWSFEER-------- 364 (636)
T ss_pred CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcce---------EEEEEeccc--------
Confidence 35899999999999999 556666667777789999999999999999999996 999999742
Q ss_pred CCceEEEEEeccCCCCCCceEEEEEec
Q 037368 114 SPDCIGILRVFTSQFPEAKITSFLVLE 140 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~p~~~v~~va~~~ 140 (823)
+. ..+.+. +. ++|+.|||+|
T Consensus 365 --RV--VARGqG--Hk-SWVs~VaFDp 384 (636)
T KOG2394|consen 365 --RV--VARGQG--HK-SWVSVVAFDP 384 (636)
T ss_pred --eE--EEeccc--cc-cceeeEeecc
Confidence 12 223332 22 6799999998
No 274
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=8e-05 Score=78.73 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=89.3
Q ss_pred EEEEEecCCCCcceEEEEEeCCeEEEEE-cccccccccceeEE--ecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEec
Q 037368 134 TSFLVLEEAPPILLIAIGLDNGCIYCIK-GDIARERITRFKLQ--VDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 134 ~~va~~~d~~~~~~ia~G~~dG~V~l~~-~~~~~~~~~k~~~~--~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
.+|||+.+|+. +|+|..||++++|+ ..+ ...+ .++...|..|+|+|||+ .|+..+.+...+|++.
T Consensus 148 k~vaf~~~gs~---latgg~dg~lRv~~~Ps~-------~t~l~e~~~~~eV~DL~FS~dgk--~lasig~d~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSK---LATGGTDGTLRVWEWPSM-------LTILEEIAHHAEVKDLDFSPDGK--FLASIGADSARVWSVN 215 (398)
T ss_pred eEEEEcCCCCE---eeeccccceEEEEecCcc-------hhhhhhHhhcCccccceeCCCCc--EEEEecCCceEEEEec
Confidence 78999999999 99999999999998 321 1122 23578899999999995 5665665699999997
Q ss_pred CCCCcceEEccC--CCccceecccCCC-----eEEEee--CCeEEEEecC---C----CC--ccccccCC-eEEEEeeCc
Q 037368 211 NQPPKRQFLDNI--GCSTNSVAMSDRL-----ELIIGR--PEAVYFYEVD---G----RG--PCWAFEGE-KKLLGWFRG 271 (823)
Q Consensus 211 ~~~~~~~~l~~~--~~~~~~~~~s~~~-----~liv~~--~~~I~i~~~~---g----~~--~~~~~~g~-~~~i~~~~~ 271 (823)
... ......+. ...+..|-|+-|+ .+++.. .+.|..|++. + +. ....+++- ...++..|.
T Consensus 216 ~g~-~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk 294 (398)
T KOG0771|consen 216 TGA-ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK 294 (398)
T ss_pred cCc-hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence 642 22322211 1223345666444 223222 3566665542 1 10 00112221 123555788
Q ss_pred EEEEEEecCCCCccEEEEEeCCC
Q 037368 272 YLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 272 ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
++++++. ++.|.|++...
T Consensus 295 f~AlGT~-----dGsVai~~~~~ 312 (398)
T KOG0771|consen 295 FLALGTM-----DGSVAIYDAKS 312 (398)
T ss_pred EEEEecc-----CCcEEEEEece
Confidence 9998884 58999998865
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.0019 Score=67.68 Aligned_cols=197 Identities=16% Similarity=0.206 Sum_probs=123.3
Q ss_pred eEEEeeCCC-EEEEEe-cCCeEEEEc--CCCeee--EeEeecccc----------eeEEEEecCCCEEEEE--ecCCCCc
Q 037368 28 ITCCSSGRG-KVVIGC-DDGAVSLLD--RGLKFN--FGFQAHSSS----------VLFLQQLKQRNFLVTV--GEDEQVS 89 (823)
Q Consensus 28 is~~~~~~~-~l~~gs-~dG~i~~~d--~~~~~~--~~~~~H~~~----------V~~i~~~~~~~~l~s~--s~D~~~~ 89 (823)
.......++ +++++. +.|.|.++- .+|.+. -..-.|.++ +....+.|++++|+++ |.|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr--- 168 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR--- 168 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce---
Confidence 333334444 666664 778999997 334432 133446666 8889999999999887 5665
Q ss_pred ccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccc
Q 037368 90 AQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERI 169 (823)
Q Consensus 90 ~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~ 169 (823)
|.+++++.... .|.- ... -.|++...-++|||+++. +..+.=.+++|.+|.-+- ..
T Consensus 169 -------i~~y~~~dg~L------~~~~--~~~----v~~G~GPRHi~FHpn~k~--aY~v~EL~stV~v~~y~~---~~ 224 (346)
T COG2706 169 -------IFLYDLDDGKL------TPAD--PAE----VKPGAGPRHIVFHPNGKY--AYLVNELNSTVDVLEYNP---AV 224 (346)
T ss_pred -------EEEEEcccCcc------cccc--ccc----cCCCCCcceEEEcCCCcE--EEEEeccCCEEEEEEEcC---CC
Confidence 99999983211 1100 111 123344789999999975 233344489999997531 11
Q ss_pred ccee---EE------ecCCCCcceEEEeecCCeEEEEEEcC--CeEEEEEecCCCCcceEE---ccCCCccceecccCCC
Q 037368 170 TRFK---LQ------VDNQCSVMGLGFRVDGQALQLFAVTP--NSVILFSLQNQPPKRQFL---DNIGCSTNSVAMSDRL 235 (823)
Q Consensus 170 ~k~~---~~------~~~~~~It~l~fs~dg~~~~l~~~t~--~~V~~~d~~~~~~~~~~l---~~~~~~~~~~~~s~~~ 235 (823)
.+.. .+ +.+....-.|+.++|| .+|++++. +.|.+|.+...+...... ..+|-.++...|+|+|
T Consensus 225 g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG--rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 225 GKFEELQTIDTLPEDFTGTNWAAAIHISPDG--RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred ceEEEeeeeccCccccCCCCceeEEEECCCC--CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 1111 11 1234456678999999 58999975 469999987654322222 3455557778899999
Q ss_pred eEEEee---CCeEEEEecCCC
Q 037368 236 ELIIGR---PEAVYFYEVDGR 253 (823)
Q Consensus 236 ~liv~~---~~~I~i~~~~g~ 253 (823)
.++++. ++.|.+|..+..
T Consensus 303 ~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 303 RFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CEEEEEccCCCcEEEEEEcCC
Confidence 877653 368999987644
No 276
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.98 E-value=0.0014 Score=72.26 Aligned_cols=260 Identities=15% Similarity=0.140 Sum_probs=129.0
Q ss_pred EEeeC-CCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEe-cCCCCcccccceeEEEEeCCCCC
Q 037368 30 CCSSG-RGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVG-EDEQVSAQQSAVCLKVFDLDKME 106 (823)
Q Consensus 30 ~~~~~-~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s-~D~~~~~~~~~~~vkvWdl~~~~ 106 (823)
..+++ +.++++++.||.|.++| .+++.+++.+.-. .-.+++++++|++++++. .+++ +.|+|..+.+
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~---------v~v~D~~tle 111 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT---------VSVIDAETLE 111 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE---------EEEEETTT--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc---------eeEecccccc
Confidence 33444 45788889999999999 7888888887644 457799999999987654 5665 9999988542
Q ss_pred CCCCCCCCCceEEEEEeccCC--CCCCceEEEEEecCCCCcceEEEEEeC-CeEEEEEcccccccccceeEEecCCCCcc
Q 037368 107 PEGTSSTSPDCIGILRVFTSQ--FPEAKITSFLVLEEAPPILLIAIGLDN-GCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~--~p~~~v~~va~~~d~~~~~~ia~G~~d-G~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
.++++...... .+++++.++..+|.... +++...+ |.|-+.+-. .....+.+ ..+....-.
T Consensus 112 ----------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~---fVv~lkd~~~I~vVdy~--d~~~~~~~-~i~~g~~~~ 175 (369)
T PF02239_consen 112 ----------PVKTIPTGGMPVDGPESRVAAIVASPGRPE---FVVNLKDTGEIWVVDYS--DPKNLKVT-TIKVGRFPH 175 (369)
T ss_dssp ----------EEEEEE--EE-TTTS---EEEEEE-SSSSE---EEEEETTTTEEEEEETT--TSSCEEEE-EEE--TTEE
T ss_pred ----------ceeecccccccccccCCCceeEEecCCCCE---EEEEEccCCeEEEEEec--ccccccee-eeccccccc
Confidence 46666544211 13345888888888775 6655544 777776632 10111111 222334556
Q ss_pred eEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCcc-----------ce---ecccCCCeEEE--eeCCeEE
Q 037368 184 GLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCST-----------NS---VAMSDRLELII--GRPEAVY 246 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~-----------~~---~~~s~~~~liv--~~~~~I~ 246 (823)
...|+++++ +++.++. .+.|.++|...+. ....++ .|..+ .+ ++.+..+.+++ .+.+.+.
T Consensus 176 D~~~dpdgr-y~~va~~~sn~i~viD~~~~k-~v~~i~-~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~ 252 (369)
T PF02239_consen 176 DGGFDPDGR-YFLVAANGSNKIAVIDTKTGK-LVALID-TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS 252 (369)
T ss_dssp EEEE-TTSS-EEEEEEGGGTEEEEEETTTTE-EEEEEE--SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred ccccCcccc-eeeecccccceeEEEeeccce-EEEEee-ccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence 788999985 4444443 4578899976542 222222 11110 00 11112222221 1222232
Q ss_pred EEecCCCCcc--ccccCCeEEE--EeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccc-cc--eeEE-EeecCcEEE
Q 037368 247 FYEVDGRGPC--WAFEGEKKLL--GWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV-KE--VSHM-LCEWGNIIL 318 (823)
Q Consensus 247 i~~~~g~~~~--~~~~g~~~~i--~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i-~~--v~~v-~~~~~~~~v 318 (823)
+|+...-..+ ....|....+ .+.+.|+.+-..-+ ....+|.|+|.++-.+...... .. +.++ |+.+|...+
T Consensus 253 v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~-~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 253 VHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLN-PDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp -STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT--SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred cchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCC-CCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence 3332211111 1122333222 34566776652111 1367999999998766554321 22 4444 666776433
Q ss_pred E
Q 037368 319 V 319 (823)
Q Consensus 319 v 319 (823)
+
T Consensus 332 v 332 (369)
T PF02239_consen 332 V 332 (369)
T ss_dssp E
T ss_pred E
Confidence 3
No 277
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.96 E-value=0.0009 Score=76.21 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=100.7
Q ss_pred CCEEEEEec-CC--eEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEE-EecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 35 RGKVVIGCD-DG--AVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVT-VGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 35 ~~~l~~gs~-dG--~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s-~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
++.|+..+. +| .|.+|| .+++.. .+....+......|+|+|+.|+. .+.++. + .|.+||+...
T Consensus 229 G~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~---~----~Iy~~dl~tg---- 296 (448)
T PRK04792 229 GRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQ---P----EIYVVDIATK---- 296 (448)
T ss_pred CCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCC---e----EEEEEECCCC----
Confidence 356766543 33 588888 444432 33333344557899999998765 455553 1 1667777632
Q ss_pred CCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccceeEEecCCCCcceEEEe
Q 037368 110 TSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs 188 (823)
. .+.+..+ . ......+|+||++. ++..+. +|...+|..++ .+.+.+.+........+.+|+
T Consensus 297 ----~---~~~lt~~--~---~~~~~p~wSpDG~~---I~f~s~~~g~~~Iy~~dl---~~g~~~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 297 ----A---LTRITRH--R---AIDTEPSWHPDGKS---LIFTSERGGKPQIYRVNL---ASGKVSRLTFEGEQNLGGSIT 358 (448)
T ss_pred ----C---eEECccC--C---CCccceEECCCCCE---EEEEECCCCCceEEEEEC---CCCCEEEEecCCCCCcCeeEC
Confidence 1 1122211 1 12567899999998 877654 45666665442 122223232122234567899
Q ss_pred ecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee--CC--eEEEEecCCCC
Q 037368 189 VDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR--PE--AVYFYEVDGRG 254 (823)
Q Consensus 189 ~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~--~~--~I~i~~~~g~~ 254 (823)
|||+ .++++...+ .|..+|+.+.. ...+...+. ....+|+|+|+.++ +. ++ .+++++.+|+.
T Consensus 359 pDG~-~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~~~-d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 359 PDGR-SMIMVNRTNGKFNIARQDLETGA--MQVLTSTRL-DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred CCCC-EEEEEEecCCceEEEEEECCCCC--eEEccCCCC-CCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 9996 444544433 36667766532 233332211 12347899998553 22 22 36677776653
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.95 E-value=0.0018 Score=71.08 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=111.7
Q ss_pred CCEEEEEe-cCCeEEEEc--CCCeeeEe--Eeec-----------ccceeEEEEecCCCEEEEEecCCCCcccccceeEE
Q 037368 35 RGKVVIGC-DDGAVSLLD--RGLKFNFG--FQAH-----------SSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 35 ~~~l~~gs-~dG~i~~~d--~~~~~~~~--~~~H-----------~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
+++|+++. .+|.|.+++ .+|.+... ...| .....++.++|+|++|+.+..... . |.
T Consensus 98 g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D-~-------v~ 169 (345)
T PF10282_consen 98 GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD-R-------VY 169 (345)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT-E-------EE
T ss_pred CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC-E-------EE
Confidence 45676665 689999998 44654322 1112 134678999999998877633221 1 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE---E
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL---Q 175 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~---~ 175 (823)
+|+++... +.......+.+ .++....-++|+||++. ..++.-.+++|.+++.+- ..+ +... +
T Consensus 170 ~~~~~~~~------~~l~~~~~~~~----~~G~GPRh~~f~pdg~~--~Yv~~e~s~~v~v~~~~~--~~g-~~~~~~~~ 234 (345)
T PF10282_consen 170 VYDIDDDT------GKLTPVDSIKV----PPGSGPRHLAFSPDGKY--AYVVNELSNTVSVFDYDP--SDG-SLTEIQTI 234 (345)
T ss_dssp EEEE-TTS-------TEEEEEEEEC----STTSSEEEEEE-TTSSE--EEEEETTTTEEEEEEEET--TTT-EEEEEEEE
T ss_pred EEEEeCCC------ceEEEeecccc----ccCCCCcEEEEcCCcCE--EEEecCCCCcEEEEeecc--cCC-ceeEEEEe
Confidence 99987431 11111222322 22344799999999876 135555678899886531 111 1111 1
Q ss_pred e---cC---CCCcceEEEeecCCeEEEEEEcC--CeEEEEEecCC-CCc--ceEEccCCCccceecccCCCeEE-Eee--
Q 037368 176 V---DN---QCSVMGLGFRVDGQALQLFAVTP--NSVILFSLQNQ-PPK--RQFLDNIGCSTNSVAMSDRLELI-IGR-- 241 (823)
Q Consensus 176 ~---~~---~~~It~l~fs~dg~~~~l~~~t~--~~V~~~d~~~~-~~~--~~~l~~~~~~~~~~~~s~~~~li-v~~-- 241 (823)
- .. ...-..|.++||| ..||+++. +.|.+|+++.. +.+ .......|..++.+.++|+|+++ ++.
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg--~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDG--RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTS--SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred eeccccccccCCceeEEEecCC--CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 1 11 1245689999999 47888864 56999999543 222 22233345667889999999865 443
Q ss_pred CCeEEEEecC
Q 037368 242 PEAVYFYEVD 251 (823)
Q Consensus 242 ~~~I~i~~~~ 251 (823)
++.|.+|+++
T Consensus 313 s~~v~vf~~d 322 (345)
T PF10282_consen 313 SNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEEE
T ss_pred CCeEEEEEEe
Confidence 3689999875
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.90 E-value=0.012 Score=61.32 Aligned_cols=200 Identities=14% Similarity=0.158 Sum_probs=113.2
Q ss_pred CCEEE-EEecCCeEEEEcCCCeeeEeEeecccceeEEEEe-cCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 35 RGKVV-IGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQL-KQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 35 ~~~l~-~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~-~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
.+.|+ +....|.|+.|+..+.....+.... ...+.+. ++|.+++ +..++ +.++|+...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v-~~~~~----------~~~~d~~~g------- 70 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYV-ADSGG----------IAVVDPDTG------- 70 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEE-EETTC----------EEEEETTTT-------
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEE-EEcCc----------eEEEecCCC-------
Confidence 45554 4447899999996555443444333 6777777 6655555 44555 667787642
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeC--------CeEEEEEcccccccccceeEEecCCCCcce
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDN--------GCIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~d--------G~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
. ............+...++.++++|+|+. .++-+.. |.|..++.+ .+...+.+.-..-.+
T Consensus 71 -~--~~~~~~~~~~~~~~~~~ND~~vd~~G~l---y~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~pNG 138 (246)
T PF08450_consen 71 -K--VTVLADLPDGGVPFNRPNDVAVDPDGNL---YVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGFPNG 138 (246)
T ss_dssp -E--EEEEEEEETTCSCTEEEEEEEE-TTS-E---EEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESSEEE
T ss_pred -c--EEEEeeccCCCcccCCCceEEEcCCCCE---EEEecCCCccccccccceEEECCC------CeEEEEecCcccccc
Confidence 1 1112222111112234899999999987 6665543 456656542 233334433344679
Q ss_pred EEEeecCCeEEEEEEc--CCeEEEEEecCCCC---cceEE-ccCCC--ccceecccCCCeEEEe--eCCeEEEEecCCCC
Q 037368 185 LGFRVDGQALQLFAVT--PNSVILFSLQNQPP---KRQFL-DNIGC--STNSVAMSDRLELIIG--RPEAVYFYEVDGRG 254 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~~---~~~~l-~~~~~--~~~~~~~s~~~~liv~--~~~~I~i~~~~g~~ 254 (823)
|+|+++++ .|+++. .+.|+.|++..... ...++ +..+. .+.-+++..+|.+.++ ..+.|.+++.+|+-
T Consensus 139 i~~s~dg~--~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~ 216 (246)
T PF08450_consen 139 IAFSPDGK--TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKL 216 (246)
T ss_dssp EEEETTSS--EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCE
T ss_pred eEECCcch--heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccE
Confidence 99999994 566654 35699999864332 12223 21222 3566888889998776 45799999998652
Q ss_pred cc-ccccC-CeEEEEe
Q 037368 255 PC-WAFEG-EKKLLGW 268 (823)
Q Consensus 255 ~~-~~~~g-~~~~i~~ 268 (823)
.. ..+++ .++.+++
T Consensus 217 ~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 217 LREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEE-SSSSEEEEEE
T ss_pred EEEEcCCCCCEEEEEE
Confidence 21 23332 3455555
No 280
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.89 E-value=0.0048 Score=75.80 Aligned_cols=197 Identities=13% Similarity=0.153 Sum_probs=113.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCC
Q 037368 64 SSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAP 143 (823)
Q Consensus 64 ~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~ 143 (823)
.+.|.++.+.++...++.+..+|. |-+...+... ......++.++. ..|.|.+||||..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gd---------i~~~~~~~~~----~~~~~E~VG~vd--------~GI~a~~WSPD~E 133 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGD---------IILVREDPDP----DEDEIEIVGSVD--------SGILAASWSPDEE 133 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCce---------EEEEEccCCC----CCceeEEEEEEc--------CcEEEEEECCCcC
Confidence 468999999999988888888886 6666222100 011223444443 3399999999999
Q ss_pred CcceEEEEEeCCeEEEEEccc--ccc-------c----------ccceeEEec------------------------CCC
Q 037368 144 PILLIAIGLDNGCIYCIKGDI--ARE-------R----------ITRFKLQVD------------------------NQC 180 (823)
Q Consensus 144 ~~~~ia~G~~dG~V~l~~~~~--~~~-------~----------~~k~~~~~~------------------------~~~ 180 (823)
. +|+.+++|+|.+-..++ +.+ . |+|...+++ ...
T Consensus 134 l---la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd 210 (928)
T PF04762_consen 134 L---LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDD 210 (928)
T ss_pred E---EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCC
Confidence 9 99999999998764321 000 0 111111110 011
Q ss_pred CcceEEEeecCCeEEEEEEc----CC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC-----CeEEEE
Q 037368 181 SVMGLGFRVDGQALQLFAVT----PN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP-----EAVYFY 248 (823)
Q Consensus 181 ~It~l~fs~dg~~~~l~~~t----~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~-----~~I~i~ 248 (823)
.-..|+|++||. ++++.+ .+ .+++|+.++. ...+.+.....-.+++|.|.|.++++.. ..|.+|
T Consensus 211 ~~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~ReG~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 211 GRVRISWRGDGE--YFAVSSVEPETGSRRVIRVYSREGE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred CceEEEECCCCc--EEEEEEEEcCCCceeEEEEECCCce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 335788999994 344333 22 3899998753 2222222222234789999999887632 367888
Q ss_pred ecCCCCc-ccccc-----CCeEEEEee--CcEEEEEEecCCCCccEEEEEeCCC
Q 037368 249 EVDGRGP-CWAFE-----GEKKLLGWF--RGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 249 ~~~g~~~-~~~~~-----g~~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
.-+|-.+ -+.++ .....+.|. +..|++...+ .|.+|-..|
T Consensus 287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~------~vqLWt~~N 334 (928)
T PF04762_consen 287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED------RVQLWTRSN 334 (928)
T ss_pred ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC------CceEEEeeC
Confidence 7665322 13332 124567775 4455554432 366665544
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.89 E-value=0.005 Score=77.02 Aligned_cols=228 Identities=11% Similarity=0.086 Sum_probs=126.7
Q ss_pred CCEE-EEEecCCeEEEEcCCCeeeEeEee-cc-------------cceeEEEEecCCCEEEEEe-cCCCCcccccceeEE
Q 037368 35 RGKV-VIGCDDGAVSLLDRGLKFNFGFQA-HS-------------SSVLFLQQLKQRNFLVTVG-EDEQVSAQQSAVCLK 98 (823)
Q Consensus 35 ~~~l-~~gs~dG~i~~~d~~~~~~~~~~~-H~-------------~~V~~i~~~~~~~~l~s~s-~D~~~~~~~~~~~vk 98 (823)
++.+ ++-+.++.|.+||.+++.+..+.+ .. ..-..|+++++++.|..+. ..+. |+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~---------Ir 649 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA---------LR 649 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce---------EE
Confidence 3444 555677889999987876655543 11 1357899999888655443 3343 99
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccC---CCC---------CCceEEEEEec-CCCCcceEEEEEeCCeEEEEEcccc
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTS---QFP---------EAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIA 165 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~---~~p---------~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~ 165 (823)
++|+... .+.++...+. .+. -...+.|+++| ++.. +++...++.|.+|+..
T Consensus 650 ~id~~~~-----------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~L---yVad~~~~~I~v~d~~-- 713 (1057)
T PLN02919 650 EIDFVNE-----------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKV---YIAMAGQHQIWEYNIS-- 713 (1057)
T ss_pred EEecCCC-----------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeE---EEEECCCCeEEEEECC--
Confidence 9988642 1222211000 000 01257899999 5555 6666778889888742
Q ss_pred cccccceeEEec---------------CCCCcceEEEeecCCeEEEEEEc--CCeEEEEEecCCCCcceE----------
Q 037368 166 RERITRFKLQVD---------------NQCSVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQPPKRQF---------- 218 (823)
Q Consensus 166 ~~~~~k~~~~~~---------------~~~~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~~~~~~---------- 218 (823)
.....++.. .-...++|+|+++|+ .|+++. +++|+.||+.+.......
T Consensus 714 ---~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l 788 (1057)
T PLN02919 714 ---DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNL 788 (1057)
T ss_pred ---CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC--EEEEEECCCCeEEEEECCCCcEEEEEecccccCccc
Confidence 111111110 012346799999984 466664 357999998653210000
Q ss_pred --Ec-cCC-------CccceecccCCCeEEEee--CCeEEEEecCCCCcc-cc------c-cC--------CeEEEEee-
Q 037368 219 --LD-NIG-------CSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPC-WA------F-EG--------EKKLLGWF- 269 (823)
Q Consensus 219 --l~-~~~-------~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~-~~------~-~g--------~~~~i~~~- 269 (823)
+. ..| ..+..++++++|.+.|+- ++.|++|+.++.... .. + +| .+..++..
T Consensus 789 ~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 789 FKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred ccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 00 000 124567888888876653 468999998643111 00 0 01 24445443
Q ss_pred -CcEEEEEEecCCCCccEEEEEeCCCCEE
Q 037368 270 -RGYLLCVIADQRNSKNIFNVYDLKNRLI 297 (823)
Q Consensus 270 -~~ylv~~s~d~~~~~~~I~I~D~~~~~i 297 (823)
|. +.++.. ..++|++||+.++..
T Consensus 869 dG~-lyVaDt----~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGR-LFVADT----NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-EEEEEC----CCCEEEEEECCCCcc
Confidence 43 333322 457999999987654
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.82 E-value=0.0011 Score=66.43 Aligned_cols=147 Identities=13% Similarity=0.074 Sum_probs=96.1
Q ss_pred EEEEEecCCeEEEEcCCCeeeEeEeecccc--eeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLDRGLKFNFGFQAHSSS--VLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~--V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
-+..++.|.++++.+-++... .+..|-.. ++++++++++.+++++|+-.. |-.|.++... .
T Consensus 130 ~~~i~sndht~k~~~~~~~s~-~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~---------Vf~y~id~~s-------e 192 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSN-KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRR---------VFRYAIDDES-------E 192 (344)
T ss_pred ceeeccCCcceeEEEEecCcc-cceeeccccceeeeEEcCCCceEEEecCCCc---------ceEEEeCCcc-------c
Confidence 355666666666666444333 34556544 889999999999999998887 8889887421 1
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccccee----EEecCCCCcceEEEeec
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFK----LQVDNQCSVMGLGFRVD 190 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~----~~~~~~~~It~l~fs~d 190 (823)
..++ ++.-+. +..-.+..|+..... +|+|+.||++-+|+.. ..+.... ..-.++|.|..+.|++.
T Consensus 193 -y~~~-~~~a~t---~D~gF~~S~s~~~~~---FAv~~Qdg~~~I~DVR---~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 193 -YIEN-IYEAPT---SDHGFYNSFSENDLQ---FAVVFQDGTCAIYDVR---NMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred -eeee-eEeccc---CCCceeeeeccCcce---EEEEecCCcEEEEEec---ccccchhhhcccCCCCCCceEEEEecCC
Confidence 1233 222111 112467788888788 9999999999999863 1111000 01125899999999987
Q ss_pred CCeEEEEEEcC-CeEEEEEecC
Q 037368 191 GQALQLFAVTP-NSVILFSLQN 211 (823)
Q Consensus 191 g~~~~l~~~t~-~~V~~~d~~~ 211 (823)
|...+|+.+-. +.+.+.|++.
T Consensus 262 g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 262 GLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CcceEEEEecCcceEEEEEccc
Confidence 64456666654 4588888875
No 283
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.80 E-value=0.002 Score=66.21 Aligned_cols=243 Identities=15% Similarity=0.197 Sum_probs=125.5
Q ss_pred CCCCeEEEe-eCCC-E-EEEEecCCeEEEEcCCCeeeEeEeec-ccceeEEEEecCCCEEEEEecCCCCc--cccc----
Q 037368 24 VSGNITCCS-SGRG-K-VVIGCDDGAVSLLDRGLKFNFGFQAH-SSSVLFLQQLKQRNFLVTVGEDEQVS--AQQS---- 93 (823)
Q Consensus 24 ~~~~is~~~-~~~~-~-l~~gs~dG~i~~~d~~~~~~~~~~~H-~~~V~~i~~~~~~~~l~s~s~D~~~~--~~~~---- 93 (823)
+..+++.++ ++++ . |.+...+-.|.+|+-+.+.. .+-.| ...+..++|+|+|++.+-++.-.. + .+++
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDC-kdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDC-KDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeecccH-HHHHHHHhhHH
Confidence 344554444 3333 4 56777889999999333322 23344 467899999999999887764321 0 0000
Q ss_pred ceeEEEEeCCCCCCCC---CCCCCCceEEEE------EeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc--
Q 037368 94 AVCLKVFDLDKMEPEG---TSSTSPDCIGIL------RVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG-- 162 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~---~~~~~~~~~~~~------~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~-- 162 (823)
=+.++=.++++.+..+ +..|+ -+... ++..... +-.+..++++|.++. +|+|+.||.+++.+-
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~--~laVwd~~Leykv~aYe~-~lG~k~v~wsP~~qf---lavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGN--WLAVWDNVLEYKVYAYER-GLGLKFVEWSPCNQF---LAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCc--EEEEecchhhheeeeeee-ccceeEEEeccccce---EEeeccchhhhhhceee
Confidence 0001111222221100 00111 01100 0000000 123899999999999 999999999986431
Q ss_pred -----cc-----ccccc-----------------------------------c---------ceeEEe------cCCCCc
Q 037368 163 -----DI-----ARERI-----------------------------------T---------RFKLQV------DNQCSV 182 (823)
Q Consensus 163 -----~~-----~~~~~-----------------------------------~---------k~~~~~------~~~~~I 182 (823)
.+ .++.. . +...+. +....|
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 00 01100 0 000011 012235
Q ss_pred ceEEEeecCCeEEEEEEcCC---eEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEeeC-CeEEEEecCCCCccc
Q 037368 183 MGLGFRVDGQALQLFAVTPN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGRP-EAVYFYEVDGRGPCW 257 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~~-~~I~i~~~~g~~~~~ 257 (823)
--++|++|. +.+++-+++ -+.+||+.... ...++. ...++....|.|+. ++++..+ ..+++|.+.|. .+.
T Consensus 322 g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~-l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~-~~V 396 (447)
T KOG4497|consen 322 GKLAFSCDS--TYAATRNDKYPNALWLWDLQNLK-LHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-RVV 396 (447)
T ss_pred ceeeecCCc--eEEeeecCCCCceEEEEechhhh-hhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-eEE
Confidence 578999987 455555553 49999997543 333443 33456667888855 4666544 57999998862 222
Q ss_pred cc--cCC-eEEEEee--CcEEEEEEec
Q 037368 258 AF--EGE-KKLLGWF--RGYLLCVIAD 279 (823)
Q Consensus 258 ~~--~g~-~~~i~~~--~~ylv~~s~d 279 (823)
.. +|- ...+.|. |+.+++.+.|
T Consensus 397 ~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 397 GVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred ecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 22 221 2345553 5566655543
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.0067 Score=68.23 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=112.1
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCE-EEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNF-LVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV 123 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~-l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~ 123 (823)
..|.+-|.+|.-.+.+.... .+..-.|+|+|+. ++..+.++. . |. |-++|+.+. .+. .+..
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~-~-~~----Iyv~dl~tg--------~~~---~lt~ 230 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGER-K-PT----LYKYNLYTG--------KKE---KIAS 230 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCC-C-CE----EEEEECCCC--------cEE---EEec
Confidence 35666665555444454443 7888999999985 665565531 1 22 888888742 222 2221
Q ss_pred ccCCCCCCceEEEEEecCCCCcceEEEEEe-CC--eEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc
Q 037368 124 FTSQFPEAKITSFLVLEEAPPILLIAIGLD-NG--CIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT 200 (823)
Q Consensus 124 ~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG--~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t 200 (823)
.+ +...+.+|+|||+. ++.... +| .|.+++.+ +...+.+....+..+.-.|+|||+ .++|+++
T Consensus 231 ----~~-g~~~~~~~SPDG~~---la~~~~~~g~~~Iy~~dl~-----~g~~~~LT~~~~~d~~p~~SPDG~-~I~F~Sd 296 (419)
T PRK04043 231 ----SQ-GMLVVSDVSKDGSK---LLLTMAPKGQPDIYLYDTN-----TKTLTQITNYPGIDVNGNFVEDDK-RIVFVSD 296 (419)
T ss_pred ----CC-CcEEeeEECCCCCE---EEEEEccCCCcEEEEEECC-----CCcEEEcccCCCccCccEECCCCC-EEEEEEC
Confidence 11 22567889999988 776543 43 45555532 222333433333345668999996 4556554
Q ss_pred CC---eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-e-eC---------CeEEEEecCCCCcc-ccccCC--e
Q 037368 201 PN---SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-G-RP---------EAVYFYEVDGRGPC-WAFEGE--K 263 (823)
Q Consensus 201 ~~---~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~-~~---------~~I~i~~~~g~~~~-~~~~g~--~ 263 (823)
.. .|+.+++.+.. ..++.. .+.. + ..|||||+.++ . .. ..|++.++++.... ++-.+. .
T Consensus 297 r~g~~~Iy~~dl~~g~-~~rlt~-~g~~-~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~ 372 (419)
T PRK04043 297 RLGYPNIFMKKLNSGS-VEQVVF-HGKN-N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQF 372 (419)
T ss_pred CCCCceEEEEECCCCC-eEeCcc-CCCc-C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCC
Confidence 32 48888887543 222222 2222 2 37899998553 2 21 14666666543221 111111 1
Q ss_pred EEEEeeCcEEEEEEecCCCCccEEEEEeCCCC
Q 037368 264 KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNR 295 (823)
Q Consensus 264 ~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~ 295 (823)
-.++++|.+++..+..+ ....+.++++.++
T Consensus 373 p~~SPDG~~I~f~~~~~--~~~~L~~~~l~g~ 402 (419)
T PRK04043 373 PRFSSDGGSIMFIKYLG--NQSALGIIRLNYN 402 (419)
T ss_pred eEECCCCCEEEEEEccC--CcEEEEEEecCCC
Confidence 23444555555554321 2234555555543
No 285
>PLN03077 Protein ECB2; Provisional
Probab=97.78 E-value=0.15 Score=63.43 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=54.3
Q ss_pred cCHHHHHHHHhcCChHH--HHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHHHhhhcc
Q 037368 501 GRYDEALQYISSLDPSQ--AGV-TVKEYGKILIEHKPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVH 577 (823)
Q Consensus 501 ~~~~~al~yl~~l~~~~--~~~-~i~k~~~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 577 (823)
+++++|.+++..+..++ .+. +|.-|. -...++++++++.++......| +......++..+..
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~---~~g~~~~A~~lf~~M~~~g~~P------------d~~t~~~ll~a~~~ 401 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYE---KNGLPDKALETYALMEQDNVSP------------DEITIASVLSACAC 401 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCCC------------CceeHHHHHHHHhc
Confidence 67777777777765443 122 122222 1345677888777654322211 22233445555543
Q ss_pred --CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 578 --HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 578 --~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
..+.....++.+++..- .+ ...++|.|+.+|.+.
T Consensus 402 ~g~~~~a~~l~~~~~~~g~-~~-~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGL-IS-YVVVANALIEMYSKC 437 (857)
T ss_pred cchHHHHHHHHHHHHHhCC-Cc-chHHHHHHHHHHHHc
Confidence 45566667777766543 22 468899999999875
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00017 Score=77.99 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=133.7
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
+..|.||+..|..|+-..+.+-++|+|.|.| ||+|++.... ..-++..|.-+. ..++.| |..+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKT---------VKLWSik~Eg---D~~~tsaCQfTY--~aHkk~---i~~i 790 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKT---------VKLWSIKPEG---DEIGTSACQFTY--QAHKKP---IHDI 790 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCce---------EEEEEecccc---CccccceeeeEh--hhccCc---ccce
Confidence 3467899999988887778888999999998 9999997521 112222353333 334567 9999
Q ss_pred EEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCCCcceEEEeecCCeEEEEEE-c-CCeEEEEEecCCC
Q 037368 137 LVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQCSVMGLGFRVDGQALQLFAV-T-PNSVILFSLQNQP 213 (823)
Q Consensus 137 a~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~l~fs~dg~~~~l~~~-t-~~~V~~~d~~~~~ 213 (823)
.|-.+.+. +|+ -||.|++|+.-+.+- . .++.. ..++.++.+.--++-.+.++.++ + .++|+++|-+.-.
T Consensus 791 gfL~~lr~---i~S--cD~giHlWDPFigr~--L-aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 791 GFLADLRS---IAS--CDGGIHLWDPFIGRL--L-AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred eeeeccce---eee--ccCcceeecccccch--h-HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 99999888 775 499999998643111 1 11111 11344555544333111344443 3 4579999976432
Q ss_pred --CcceEEc--cCCCccceecccCCCe-EEEe-eCCeEEEEecCCCCcc-ccccC---Ce-EEEEeeCcEEEEEEecCCC
Q 037368 214 --PKRQFLD--NIGCSTNSVAMSDRLE-LIIG-RPEAVYFYEVDGRGPC-WAFEG---EK-KLLGWFRGYLLCVIADQRN 282 (823)
Q Consensus 214 --~~~~~l~--~~~~~~~~~~~s~~~~-liv~-~~~~I~i~~~~g~~~~-~~~~g---~~-~~i~~~~~ylv~~s~d~~~ 282 (823)
.-.++.. .....+.|++..|.|. ++++ ++++|.+.|.+ +|.. -.|.- .- +..++....++...
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR-~G~vINswrpmecdllqlaapsdq~L~~sa----- 936 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR-NGKVINSWRPMECDLLQLAAPSDQALAQSA----- 936 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC-CCceeccCCcccchhhhhcCchhHHHHhhc-----
Confidence 1122222 2234567888887665 5554 45688888776 3332 12211 10 11122222332221
Q ss_pred CccEEEE-EeCCCCEEEEecc-ccceeEEEeecCcEEEEEcCCeEEEEe
Q 037368 283 SKNIFNV-YDLKNRLIAHSLV-VKEVSHMLCEWGNIILVMTDKSVLCIG 329 (823)
Q Consensus 283 ~~~~I~I-~D~~~~~i~~~~~-i~~v~~v~~~~~~~~vvs~~~~v~~l~ 329 (823)
.++++.| |-...+..-++.. -+...+.+..-|.-+|...+|.++.+-
T Consensus 937 ldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 937 LDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred ccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEE
Confidence 3577777 7655554444433 222444443444445555556655554
No 287
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.76 E-value=0.0036 Score=68.05 Aligned_cols=245 Identities=14% Similarity=0.112 Sum_probs=139.6
Q ss_pred eEEEEc-CCCeeeEeEeecccc--ee-EEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEE
Q 037368 46 AVSLLD-RGLKFNFGFQAHSSS--VL-FLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGIL 121 (823)
Q Consensus 46 ~i~~~d-~~~~~~~~~~~H~~~--V~-~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~ 121 (823)
.+.+|| .+|.++.+|..-..+ .+ -+.|+-+.+++|=...+. +.|+++...- .+.....+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s----------l~i~e~t~n~-------~~~p~~~l 171 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS----------LYIHEITDNI-------EEHPFKNL 171 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe----------EEEEecCCcc-------ccCchhhc
Confidence 589999 788888888876544 44 566666777776654443 8999973210 11112222
Q ss_pred EeccCCCCCCceEEEEEecCCCCcceEE-----EEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEE
Q 037368 122 RVFTSQFPEAKITSFLVLEEAPPILLIA-----IGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQL 196 (823)
Q Consensus 122 ~~~~~~~p~~~v~~va~~~d~~~~~~ia-----~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l 196 (823)
+ | ..++.++|+|.++. ..+| .+...+.+++|... +.+.-+.+.+++ -.=..+.|.+.|+..++
T Consensus 172 r------~-~gi~dFsisP~~n~-~~la~~tPEk~~kpa~~~i~sIp--~~s~l~tk~lfk--~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 172 R------P-VGILDFSISPEGNH-DELAYWTPEKLNKPAMVRILSIP--KNSVLVTKNLFK--VSGVQLKWQVLGKYLLV 239 (561)
T ss_pred c------c-cceeeEEecCCCCC-ceEEEEccccCCCCcEEEEEEcc--CCCeeeeeeeEe--ecccEEEEecCCceEEE
Confidence 2 1 22888888887543 1122 23456788888753 111112223332 12245677777752222
Q ss_pred EEEc----------CCeEEEEEecCCCCcceEEccCCCccceecccCCC-eEEEeeC---CeEEEEecCCCCccccccCC
Q 037368 197 FAVT----------PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRL-ELIIGRP---EAVYFYEVDGRGPCWAFEGE 262 (823)
Q Consensus 197 ~~~t----------~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~-~liv~~~---~~I~i~~~~g~~~~~~~~g~ 262 (823)
.+-+ .+.+++++++++..+ ... +...+|-..+|+|.+ +|++..+ -.+.+++++|+-.....++.
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e~~i~-V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~ 317 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITERSIP-VEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK 317 (561)
T ss_pred EEEEeeecccceeccceEEEEeecccccc-eec-cccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc
Confidence 2222 134778888765422 111 234567778999855 5776442 36788998877332333443
Q ss_pred e--EEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEec-cccceeEE-EeecCcEEEEEcCC
Q 037368 263 K--KLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSL-VVKEVSHM-LCEWGNIILVMTDK 323 (823)
Q Consensus 263 ~--~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~-~i~~v~~v-~~~~~~~~vvs~~~ 323 (823)
+ ..+++.+.|+++...+. -.+.+.|||+.+++.+-.. ...+...+ +++++++|.++.++
T Consensus 318 rNT~~fsp~~r~il~agF~n--l~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts 380 (561)
T COG5354 318 RNTIFFSPHERYILFAGFDN--LQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTS 380 (561)
T ss_pred cccccccCcccEEEEecCCc--cccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCC
Confidence 2 24566788988865442 3578999999998865422 22222222 67777777775543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.74 E-value=0.0002 Score=72.63 Aligned_cols=212 Identities=17% Similarity=0.214 Sum_probs=128.7
Q ss_pred CCCeEEEeeCC--CEEEEEecCCeEEEEcCC------CeeeEeEeeccc------------ceeEEEEecCC--CEEEEE
Q 037368 25 SGNITCCSSGR--GKVVIGCDDGAVSLLDRG------LKFNFGFQAHSS------------SVLFLQQLKQR--NFLVTV 82 (823)
Q Consensus 25 ~~~is~~~~~~--~~l~~gs~dG~i~~~d~~------~~~~~~~~~H~~------------~V~~i~~~~~~--~~l~s~ 82 (823)
.+.|+++.++. .++++|+..|.|-++.++ .+-...|++|.. .|+.|.+..++ +.++-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 45688888864 588999889999999833 122335788753 37888887644 335555
Q ss_pred ecCCCCcccccceeEEEEeCCCCCCC------------CCCCC---------CCceEE--------EEEeccCCCCCCce
Q 037368 83 GEDEQVSAQQSAVCLKVFDLDKMEPE------------GTSST---------SPDCIG--------ILRVFTSQFPEAKI 133 (823)
Q Consensus 83 s~D~~~~~~~~~~~vkvWdl~~~~~~------------~~~~~---------~~~~~~--------~~~~~~~~~p~~~v 133 (823)
+.|.+ ||+|-+...... ..+.| -|+|-+ .-++..+.+| ..+
T Consensus 106 tNdkt---------iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~-yhi 175 (460)
T COG5170 106 TNDKT---------IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP-YHI 175 (460)
T ss_pred cCCce---------eeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce-eEe
Confidence 67787 999998754210 00111 011100 0111111222 348
Q ss_pred EEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccce-eEEec-----CCCCcceEEEeecCCeEEEEEEcCCeEEEE
Q 037368 134 TSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRF-KLQVD-----NQCSVMGLGFRVDGQALQLFAVTPNSVILF 207 (823)
Q Consensus 134 ~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~-~~~~~-----~~~~It~l~fs~dg~~~~l~~~t~~~V~~~ 207 (823)
.++.|..|... +.++ .|=.|.||..++. + ++-. .-+.. ...-||+-.|+|..-..+++.++.+.|.+-
T Consensus 176 NSiS~NsD~et---~lSa-DdLrINLWnl~i~-D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 176 NSISFNSDKET---LLSA-DDLRINLWNLEII-D-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeeeecCchhe---eeec-cceeeeecccccc-C-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 99999988766 5543 4678889987642 1 1111 11111 245799999998653256788888889999
Q ss_pred EecCCC---CcceEE----ccCC--------CccceecccCCCeEEEeeC-CeEEEEecCC
Q 037368 208 SLQNQP---PKRQFL----DNIG--------CSTNSVAMSDRLELIIGRP-EAVYFYEVDG 252 (823)
Q Consensus 208 d~~~~~---~~~~~l----~~~~--------~~~~~~~~s~~~~liv~~~-~~I~i~~~~g 252 (823)
|++... .+..++ ++.. ..+..+-|+|+|+++.+++ -+|++|+++-
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm 310 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM 310 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc
Confidence 997432 122222 1111 1223456889999999998 5999999864
No 289
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.74 E-value=0.11 Score=64.91 Aligned_cols=256 Identities=12% Similarity=0.087 Sum_probs=139.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHh---cCC-CHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC---hHHHHHHhhch
Q 037368 334 ESKLDMLFKKNLYTVAINLVQS---QQA-DAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE---PSYVIQKFLDA 406 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~---~~~-~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e---ps~vI~kFl~~ 406 (823)
...+.-|++.++++.|+++-+. .+. +.. ..++......+-..|.+++|...|..... -+ ...+|.-+...
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~--~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD--KIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhC
Confidence 4556777788999999998654 222 221 22333334445567888888887655422 11 12345566666
Q ss_pred hhHHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCc--ccCCHHHHHHHHHhcCCHHHHHHHH
Q 037368 407 QRIYNLTNYLEKLHEKGFA-SKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGE--HKFDVETAIRVCRAANYHEHAMYVA 483 (823)
Q Consensus 407 ~~~~~L~~YL~~l~~~~~~-~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~--~~~d~~~ai~vl~~~g~~~~a~~la 483 (823)
++++.-...+..+.+.+.. +....+.|+.+|++.++.+...+++..-...+. ...-..+.+..+.+.|++++|+.+.
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 7776666666666666654 344556677888888776544433332110011 0223456788888888888888777
Q ss_pred HHhC------C---hHHHHHHHHHhhcCHHHHHHHHhcCC-------hH-HHHHHHH-HHHHHHHhcCCHHHHHHHHHHh
Q 037368 484 KKAG------K---HELYLKILLEDLGRYDEALQYISSLD-------PS-QAGVTVK-EYGKILIEHKPMETIDILLRLC 545 (823)
Q Consensus 484 ~~~~------~---~~~~l~il~~~~~~~~~al~yl~~l~-------~~-~~~~~i~-k~~~~Ll~~~p~~~~~ll~~~~ 545 (823)
.... + +..++..+... +++++|++++.... ++ ..+..+. -|++ ....+++.+++-.+.
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k---~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN---AGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
Confidence 6431 1 11234444444 78888887776531 11 1222222 1221 234556666665543
Q ss_pred hcCCCCcccCCCCCcccCCCCCH---HHHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 546 TEDGESTKRGASSSTYMSMLPSP---VDFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
.... .+++ ..++..+.. ..+.+...++.+.... ..| +...|+.|+..|...
T Consensus 607 e~gi---------------~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~P-D~~TynsLI~a~~k~ 662 (1060)
T PLN03218 607 EYNI---------------KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKP-DEVFFSALVDVAGHA 662 (1060)
T ss_pred HcCC---------------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhC
Confidence 2211 1222 234444433 4556666666666543 222 356777787777654
No 290
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.69 E-value=0.00056 Score=70.64 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=62.2
Q ss_pred CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC-CCCCCCCCCCCCCceEEEEEeccCCCCCCc
Q 037368 54 LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL-DKMEPEGTSSTSPDCIGILRVFTSQFPEAK 132 (823)
Q Consensus 54 ~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 132 (823)
..+++.++||...|+.....|..+-++|+|+|.+ +|||== +..+ --| .+.. ..| ..
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drt---------vrv~lkrds~q------~wp----sI~~---~mP-~~ 70 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRT---------VRVWLKRDSGQ------YWP----SIYH---YMP-SP 70 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccce---------eeeEEeccccc------cCc----hhhh---hCC-CC
Confidence 3455677899999999999998899999999998 999932 2111 112 2322 123 44
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
+++.+++++... +.+|..+|+|.-+.
T Consensus 71 ~~~~~y~~e~~~---L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 71 CSAMEYVSESRR---LYVGQDNGTVTEFA 96 (404)
T ss_pred ceEeeeeccceE---EEEEEecceEEEEE
Confidence 999999999999 99999999999774
No 291
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00028 Score=71.32 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=99.6
Q ss_pred CCEEEEEecCCeEEEEc-CCCeee--EeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RGLKFN--FGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~~~~~--~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
...++++..+|.+.+-+ ....+. ++|++|....+-..|+. +.+++.|+|+|+. +..||++...
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~---------l~~~D~R~p~---- 199 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS---------LSCWDIRIPK---- 199 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce---------EEEEEecCCc----
Confidence 45789999999999666 444443 48999999999999975 4478999999998 9999998321
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCCCcceEEEe
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQCSVMGLGFR 188 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~l~fs 188 (823)
+ ..-+..+++. ..|.|+.-+| .... ||+|+-|..|++|+.. .....+.. ...+.|+.+.++
T Consensus 200 ---~-~i~~n~kvH~-----~GV~SI~ss~~~~~~---I~TGsYDe~i~~~DtR-----nm~kPl~~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 200 ---T-FIWHNSKVHT-----SGVVSIYSSPPKPTY---IATGSYDECIRVLDTR-----NMGKPLFKAKVGGGVWRIKHH 262 (339)
T ss_pred ---c-eeeecceeee-----cceEEEecCCCCCce---EEEeccccceeeeehh-----cccCccccCccccceEEEEec
Confidence 1 1111123221 2378887765 4567 9999999999999852 22222221 124678888888
Q ss_pred ecCCeEEEEEEcCCeEEEEEecCC
Q 037368 189 VDGQALQLFAVTPNSVILFSLQNQ 212 (823)
Q Consensus 189 ~dg~~~~l~~~t~~~V~~~d~~~~ 212 (823)
|.-....|+++--++..+.+.+.+
T Consensus 263 p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred chhhhHHHHHHHhcCceEEEeccc
Confidence 764212344555667777776543
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.67 E-value=0.022 Score=61.44 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=88.3
Q ss_pred EEEeeCCCEEEEEecCC-eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 29 TCCSSGRGKVVIGCDDG-AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG-~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
.-+...+..++.|+.|| .+-++|..+...+.+..--+.|-.+.++++|+.++.+-+... +-+.|++
T Consensus 365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~e---------l~vidid---- 431 (668)
T COG4946 365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFE---------LWVIDID---- 431 (668)
T ss_pred EEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceE---------EEEEEec----
Confidence 33444455789999999 999999666666678877789999999999998886655443 5556776
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC----eEEEEEcccccccccceeEEecCCCCcc
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG----CIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG----~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
+++++. +.- .-.+=|+.++|||+++. +|-++-+| .|++++.+ +.|.-.+....+-=-
T Consensus 432 ----ngnv~~---idk----S~~~lItdf~~~~nsr~---iAYafP~gy~tq~Iklydm~-----~~Kiy~vTT~ta~Df 492 (668)
T COG4946 432 ----NGNVRL---IDK----SEYGLITDFDWHPNSRW---IAYAFPEGYYTQSIKLYDMD-----GGKIYDVTTPTAYDF 492 (668)
T ss_pred ----CCCeeE---ecc----cccceeEEEEEcCCcee---EEEecCcceeeeeEEEEecC-----CCeEEEecCCccccc
Confidence 344432 220 00122999999999999 99988777 57788753 223222222222233
Q ss_pred eEEEeecCC
Q 037368 184 GLGFRVDGQ 192 (823)
Q Consensus 184 ~l~fs~dg~ 192 (823)
+-+|.|||+
T Consensus 493 sPaFD~d~r 501 (668)
T COG4946 493 SPAFDPDGR 501 (668)
T ss_pred CcccCCCCc
Confidence 456778884
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.66 E-value=0.00014 Score=72.26 Aligned_cols=120 Identities=27% Similarity=0.329 Sum_probs=81.3
Q ss_pred CCCeEEEeeCC---CEEEEEecCCeEEEEc-CCCe-eeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEE
Q 037368 25 SGNITCCSSGR---GKVVIGCDDGAVSLLD-RGLK-FNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 25 ~~~is~~~~~~---~~l~~gs~dG~i~~~d-~~~~-~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
...|+|.|.++ ..++.|+.+|.+-+|| ++.. +.-.+++|+++|+.+-|+| ++..|+|||+||. +-
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs---------lw 249 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS---------LW 249 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc---------EE
Confidence 34489999876 3568999999999999 6654 4556789999999999998 5688999999998 88
Q ss_pred EEeCCCCCC-----CCC----CCCCCceEEE-EEeccCCCCC--CceEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 99 VFDLDKMEP-----EGT----SSTSPDCIGI-LRVFTSQFPE--AKITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 99 vWdl~~~~~-----~~~----~~~~~~~~~~-~~~~~~~~p~--~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
-||-..... +++ .++.| ++. +++.+ -.|+ ..|+++.+. |.+ +++|+.-+.|++++
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~--v~s~i~i~~-ll~~~~~SinsfDV~--g~~---lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDP--VKSRIEITS-LLPSRSLSINSFDVL--GPC---LVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCc--ccceEeeec-cccccceeeeeeecc--Cce---EEeccccceEEEec
Confidence 888773211 000 01111 111 22211 1121 126665554 457 99999999999885
No 294
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.12 Score=58.14 Aligned_cols=290 Identities=12% Similarity=0.106 Sum_probs=146.5
Q ss_pred Cceeec--ccccccCCCCCCCC--cCCCCeEEEeeCCCEEEEEecC----------C-eEEEEcCCCeeeEeEeecccce
Q 037368 3 QWRKFD--FFEEKYGGKSTIPE--EVSGNITCCSSGRGKVVIGCDD----------G-AVSLLDRGLKFNFGFQAHSSSV 67 (823)
Q Consensus 3 ~w~~f~--ff~~~~~~~~~~~~--~~~~~is~~~~~~~~l~~gs~d----------G-~i~~~d~~~~~~~~~~~H~~~V 67 (823)
+|.+.. ||.+..+....-+. ....-+-+++..+|-+|+...+ . .|++|+..|+++.++.=-.+.|
T Consensus 4 ~W~~L~d~~Yrk~~ly~m~W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~i 83 (410)
T PF04841_consen 4 NWEKLGDVYYRKRELYSMSWSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRI 83 (410)
T ss_pred CcEECCCEEEEEEEeccCCCCccccccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCE
Confidence 455544 66655555432111 1112234455556666655333 2 5999998898876654333899
Q ss_pred eEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcce
Q 037368 68 LFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILL 147 (823)
Q Consensus 68 ~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ 147 (823)
.++.|.. ...|+.+..||+ ++++|+..... ..-+..+... ..++.++.+..+..+|
T Consensus 84 v~~~wt~-~e~LvvV~~dG~---------v~vy~~~G~~~----fsl~~~i~~~-----~v~e~~i~~~~~~~~G----- 139 (410)
T PF04841_consen 84 VGMGWTD-DEELVVVQSDGT---------VRVYDLFGEFQ----FSLGEEIEEE-----KVLECRIFAIWFYKNG----- 139 (410)
T ss_pred EEEEECC-CCeEEEEEcCCE---------EEEEeCCCcee----echhhhcccc-----CcccccccccccCCCC-----
Confidence 9999976 466778889998 99999863100 0000001000 1111112222333333
Q ss_pred EEEEEeCCeEEEEEcccccccccceeEEec---------CCCCcce-EEEeecCCeEEEEEEcCCeEEEEEecCCCCcce
Q 037368 148 IAIGLDNGCIYCIKGDIARERITRFKLQVD---------NQCSVMG-LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQ 217 (823)
Q Consensus 148 ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~---------~~~~It~-l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~ 217 (823)
+|+=+.++.|.+....- . ..+.+.+.+ ....++. ..++.+.. ..+..+.+..+.+.+-..-. .
T Consensus 140 ivvLt~~~~~~~v~n~~-~--~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~---~ 212 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNID-E--PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK---Q 212 (410)
T ss_pred EEEECCCCeEEEEeCcc-c--cchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc---c
Confidence 55556678887764310 0 001111100 0111111 12333321 23344444445433322100 0
Q ss_pred EEccCCCccceecccCCCeEEEe--eCCeEEEEecCCCCcc--ccc--cCCeEEEEeeCcEEEEEEecCCCCccEEEEEe
Q 037368 218 FLDNIGCSTNSVAMSDRLELIIG--RPEAVYFYEVDGRGPC--WAF--EGEKKLLGWFRGYLLCVIADQRNSKNIFNVYD 291 (823)
Q Consensus 218 ~l~~~~~~~~~~~~s~~~~liv~--~~~~I~i~~~~g~~~~--~~~--~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D 291 (823)
++ ...++..++.||+|++++. .++.+++.+.+-+... +.. ...+..+.|-|+-.|++.-. ..|.++.
T Consensus 213 -i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~-----~~l~lvg 285 (410)
T PF04841_consen 213 -ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWE-----DELLLVG 285 (410)
T ss_pred -cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeC-----CEEEEEC
Confidence 21 1235667889999987653 3356777765422211 122 24567888988755544422 4788887
Q ss_pred CCCCEEEEeccccceeEEEeecCcEEEEEcCCeEEEEeecCh
Q 037368 292 LKNRLIAHSLVVKEVSHMLCEWGNIILVMTDKSVLCIGEKDM 333 (823)
Q Consensus 292 ~~~~~i~~~~~i~~v~~v~~~~~~~~vvs~~~~v~~l~~~~~ 333 (823)
+.+..+.|.-... ..+..+-+++-|++++ +...|+.++.
T Consensus 286 ~~~~~~~~~~~~~--~~l~~E~DG~riit~~-~~~~l~~Vp~ 324 (410)
T PF04841_consen 286 PDGDSISFWYDGP--VILVSEIDGVRIITST-SHEFLQRVPD 324 (410)
T ss_pred CCCCceEEeccCc--eEEeccCCceEEEeCC-ceEEEEECCH
Confidence 7777665543322 2356677778888764 3555555443
No 295
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=97.66 E-value=0.029 Score=60.27 Aligned_cols=260 Identities=14% Similarity=0.139 Sum_probs=135.4
Q ss_pred CEEEEEecCCeEEEEcCC--CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCC-----
Q 037368 36 GKVVIGCDDGAVSLLDRG--LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE----- 108 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~--~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~----- 108 (823)
.+|++||.+|...+.-.+ .+..+ -.+..+|++|.+.+.-+.|++.++... . ++++++...+..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~----~----L~~~~L~~L~~~~~~~~ 83 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEK--LIGRRSVTQIWVLEENNVLLMISGKKP----Q----LYSHPLSALVEKKEALG 83 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcc----e----EEEEEHHHhhhhhhccC
Confidence 489999999955554222 22321 134679999999999999999886542 1 889998654310
Q ss_pred -CCCCCCCceEEEEEeccCCCCCCc-eEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE---e-cCCCCc
Q 037368 109 -GTSSTSPDCIGILRVFTSQFPEAK-ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ---V-DNQCSV 182 (823)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~p~~~-v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~---~-~~~~~I 182 (823)
.......... .++ ++.+ +..+++.. +.....++++. ..+|.++...-...+-.+.+-. . ....++
T Consensus 84 ~~~~~~~~~~~--~~~-----~~tkGc~~~~v~~-~~~~~~l~~A~-~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~ 154 (302)
T smart00036 84 SARLVIRKNVL--TKI-----PDTKGCHLCAVVN-GKRSLFLCVAL-QSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPV 154 (302)
T ss_pred Cccccccccce--EeC-----CcCCceEEEEEEc-CCCcEEEEEEc-CCeEEEEEccChhhhhhhhcccccccCCCCccc
Confidence 0000000000 111 1111 44455442 22212244444 5677765321000000111100 0 113344
Q ss_pred ceEEEeecCCeEEEEEEcCC-eEEEEEecCC----CC--cceEEccCCCccceecccCCCeEEEeeCCeEEEEecCC-CC
Q 037368 183 MGLGFRVDGQALQLFAVTPN-SVILFSLQNQ----PP--KRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYFYEVDG-RG 254 (823)
Q Consensus 183 t~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~----~~--~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i~~~~g-~~ 254 (823)
..+..+++.....+++++.. +..++++... .. ........+..+-++..-+++.++++.++...+-+..| +.
T Consensus 155 ~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~~G~~~ 234 (302)
T smart00036 155 FVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNLYGKRR 234 (302)
T ss_pred eEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEeCCCCcc
Confidence 44433333111356666654 5444444320 10 00111111113444444567899999999888888887 32
Q ss_pred c---cccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEecc---ccceeEEEeecCcEEEEE
Q 037368 255 P---CWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLV---VKEVSHMLCEWGNIILVM 320 (823)
Q Consensus 255 ~---~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~---i~~v~~v~~~~~~~~vvs 320 (823)
. .+.|++.+..+++..+|+++..+ ..|.|+++.++...++-. ....+.+.+..+.+|+.+
T Consensus 235 ~r~~~l~w~~~p~~~~~~~pyll~~~~------~~ievr~l~~~~l~q~i~~~~~~~~r~L~~~~~~I~~~s 300 (302)
T smart00036 235 SRNPILHWEFMPESFAYHSPYLLAFHD------NGIEIRSIKTGELLQELADRETRKIRLLGSSDRKILLSS 300 (302)
T ss_pred ccceEEEcCCcccEEEEECCEEEEEcC------CcEEEEECCCCceEEEEecCCCcceEEEecCCCeEEEEe
Confidence 1 35688888899999999999974 469999999877655432 233444333333444443
No 296
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.65 E-value=0.028 Score=70.15 Aligned_cols=252 Identities=12% Similarity=0.097 Sum_probs=157.7
Q ss_pred HHHHHHHhccHHHHHHHHHhcCCC-HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC-CcCh-----HHHHHHhhchhh
Q 037368 336 KLDMLFKKNLYTVAINLVQSQQAD-AAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG-HLEP-----SYVIQKFLDAQR 408 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~~~~-~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~-~~ep-----s~vI~kFl~~~~ 408 (823)
.+..+.+.+.++.|+++.+.-..+ ......+ ..-+...|++++|.+.|.+... .+.| ..+|.-|...++
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L----L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~ 487 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRNPTLSTFNML----MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH----HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC
Confidence 345566778899999988763322 2223333 3334567999999999877633 2333 356677778888
Q ss_pred HHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHhcCChhhHHHhhc---CCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHH
Q 037368 409 IYNLTNYLEKLHEKGFA-SKDHTTLLLNCYTKLKDVEKLNMFIK---GEDGVGEHKFDVETAIRVCRAANYHEHAMYVAK 484 (823)
Q Consensus 409 ~~~L~~YL~~l~~~~~~-~~~~~~lLl~~y~kl~~~~~l~~fi~---~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~ 484 (823)
+..-...+..+.+.+.. +......|+..|++.++.++-.+++. ......+ ..-..+.+..|.+.|..++|..+..
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888877764 44555678899999988654333322 2110011 2345688899999999999998877
Q ss_pred HhC--------Ch---HHHHHHHHHhhcCHHHHHHHHhcCChH------HHHHH-HHHHHHHHHhcCCHHHHHHHHHHhh
Q 037368 485 KAG--------KH---ELYLKILLEDLGRYDEALQYISSLDPS------QAGVT-VKEYGKILIEHKPMETIDILLRLCT 546 (823)
Q Consensus 485 ~~~--------~~---~~~l~il~~~~~~~~~al~yl~~l~~~------~~~~~-i~k~~~~Ll~~~p~~~~~ll~~~~~ 546 (823)
... +. ..+++.+... +++++|++++..+... ..+.. |.-|++ ...++++.+++-++..
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k---~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ---KGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Confidence 532 11 1234555554 8999999998765221 22322 223322 4457888888877643
Q ss_pred cCCCCcccCCCCCcccCCCCCHH---HHHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 547 EDGESTKRGASSSTYMSMLPSPV---DFLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
... .|+.. .++..+.. ..+.+..+++.+.+..- .+ +...||.|+..|...
T Consensus 643 ~Gv---------------~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~p-d~~tynsLI~ay~k~ 697 (1060)
T PLN03218 643 KGV---------------KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KL-GTVSYSSLMGACSNA 697 (1060)
T ss_pred cCC---------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhC
Confidence 321 23322 33444432 45667778888776542 22 468899999999875
No 297
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.64 E-value=0.00034 Score=85.61 Aligned_cols=206 Identities=13% Similarity=0.100 Sum_probs=132.3
Q ss_pred ecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEE
Q 037368 42 CDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGIL 121 (823)
Q Consensus 42 s~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~ 121 (823)
..+++..-|...+.-+ ..+-|-..|.+|.-+|...+-+|+|.||. |++|.-... +.+-+.
T Consensus 2187 n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgs---------v~~~~w~~~----------~~v~~~ 2246 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGS---------VRMFEWGHG----------QQVVCF 2246 (2439)
T ss_pred cCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCce---------EEEEeccCC----------CeEEEe
Confidence 3456666666333322 45555578999999999899999999997 999987643 223344
Q ss_pred EeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCCCcceEEEeecCCeEEEEEE-
Q 037368 122 RVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQCSVMGLGFRVDGQALQLFAV- 199 (823)
Q Consensus 122 ~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~l~fs~dg~~~~l~~~- 199 (823)
+.. .| ++|+.+.|+.+|+. ++++-+||.+-+|... +|.-+-. -++-..+...|-.. .++.+
T Consensus 2247 rt~---g~-s~vtr~~f~~qGnk---~~i~d~dg~l~l~q~~------pk~~~s~qchnk~~~Df~Fi~s----~~~tag 2309 (2439)
T KOG1064|consen 2247 RTA---GN-SRVTRSRFNHQGNK---FGIVDGDGDLSLWQAS------PKPYTSWQCHNKALSDFRFIGS----LLATAG 2309 (2439)
T ss_pred ecc---Cc-chhhhhhhcccCCc---eeeeccCCceeecccC------CcceeccccCCccccceeeeeh----hhhccc
Confidence 432 23 56999999999999 8888889999999752 3332222 12334445555442 23322
Q ss_pred --cCC-eEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee--CCeEEEEecCCCCccccccCCeEEEEeeCcEEE
Q 037368 200 --TPN-SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR--PEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLL 274 (823)
Q Consensus 200 --t~~-~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~~~~~~~~g~~~~i~~~~~ylv 274 (823)
+++ .+.+||.--......+...|...++|+++.|..++++++ ++-|++||++-+.....|.. +. ...|++
T Consensus 2310 ~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----LD-TREYFV 2384 (2439)
T ss_pred cCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----hh-hhheee
Confidence 233 499999642221112224566778899999988877643 46899999975432222221 12 356787
Q ss_pred EEEecCCCCccEEEEEeCCC
Q 037368 275 CVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 275 ~~s~d~~~~~~~I~I~D~~~ 294 (823)
..+ ..|.++||++..
T Consensus 2385 ~~s-----s~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2385 TGS-----SEGNIKIWRLSE 2399 (2439)
T ss_pred ccC-----cccceEEEEccc
Confidence 776 468999999865
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.62 E-value=0.035 Score=61.84 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=67.0
Q ss_pred EEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEee-CCeEEEEecCCCCccccc---cCC-eEEEEe
Q 037368 195 QLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR-PEAVYFYEVDGRGPCWAF---EGE-KKLLGW 268 (823)
Q Consensus 195 ~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~-~~~I~i~~~~g~~~~~~~---~g~-~~~i~~ 268 (823)
.+++++ ++.++.||..+.. ..-..+ .+. ...... .++++.++. ++.+++++.......+.. .+. ......
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~-~~W~~~-~~~-~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGR-VLWKRD-ASS-YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred EEEEEEcCCEEEEEECCCCc-EEEeec-cCC-ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 355444 5679999986432 111111 111 111111 256665544 467888887522122222 111 111223
Q ss_pred eCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc--e-eEEEeecCcEEEEEcCCeEEEE
Q 037368 269 FRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE--V-SHMLCEWGNIILVMTDKSVLCI 328 (823)
Q Consensus 269 ~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~--v-~~v~~~~~~~~vvs~~~~v~~l 328 (823)
.++++.+.+ .++.|.++|..++.+..+..+.. + ..-....+.+|+.+.+|.|+.+
T Consensus 319 ~g~~l~~~~-----~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGD-----FEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEe-----CCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 466777766 45899999998776665544322 1 1113345679999999999876
No 299
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.62 E-value=0.0003 Score=86.12 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=122.6
Q ss_pred CCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeec-ccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 26 GNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAH-SSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 26 ~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H-~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
++|-|+.+++ -+-++|+.||.|++|. ..+..+.+|+.- .+.|+.+.|..+|+-+..+-.||. +-+|.
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~---------l~l~q 2279 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD---------LSLWQ 2279 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc---------eeecc
Confidence 3467888775 3679999999999999 556666678743 389999999999998888878886 99999
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE---EeCCeEEEEEcccccccccceeEEecC
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG---LDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G---~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
..+.. ....+| ++ ...+.|.|-. +. +|+. +.|++|-+||..+ .+.+.-+-.-+
T Consensus 2280 ~~pk~-----~~s~qc------hn-----k~~~Df~Fi~--s~---~~tag~s~d~~n~~lwDtl~---~~~~s~v~~~H 2335 (2439)
T KOG1064|consen 2280 ASPKP-----YTSWQC------HN-----KALSDFRFIG--SL---LATAGRSSDNRNVCLWDTLL---PPMNSLVHTCH 2335 (2439)
T ss_pred cCCcc-----eecccc------CC-----ccccceeeee--hh---hhccccCCCCCcccchhccc---Ccccceeeeec
Confidence 87421 000111 11 1144455544 22 3332 4578999998643 11222222345
Q ss_pred CCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC-CeEEEEecCCCCcc
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP-EAVYFYEVDGRGPC 256 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~-~~I~i~~~~g~~~~ 256 (823)
.+.+|.+++.|.. ..++.+.. +.|.+||++.++ ..+++. ++.....|+.|.. +.|+||++.+-+..
T Consensus 2336 ~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrq-l~h~~~---------~~~~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQ-LRHTFQ---------ALDTREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHH-HHHHhh---------hhhhhheeeccCcccceEEEEccccchh
Confidence 7889999999975 45555554 459999998653 222222 1223445666654 68999999866554
Q ss_pred ccccC
Q 037368 257 WAFEG 261 (823)
Q Consensus 257 ~~~~g 261 (823)
..+++
T Consensus 2404 ~~~p~ 2408 (2439)
T KOG1064|consen 2404 HTFPS 2408 (2439)
T ss_pred hcCch
Confidence 45544
No 300
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0015 Score=68.87 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=66.3
Q ss_pred EEEEc-CCCeeeEeEeecccceeEEEEecCCC-EEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec
Q 037368 47 VSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRN-FLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF 124 (823)
Q Consensus 47 i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~-~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~ 124 (823)
|++++ .+++...-..+|...|..|+|+|..+ ++..+|-+.+ |+|.|+++. .++.+...
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk---------iki~dlet~----------~~vssy~a- 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK---------IKIMDLETS----------CVVSSYIA- 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce---------EEEEecccc----------eeeeheec-
Confidence 66776 66666655567888999999999776 6778888887 999999842 13333332
Q ss_pred cCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEc
Q 037368 125 TSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKG 162 (823)
Q Consensus 125 ~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~ 162 (823)
..+ +++++|+-|. .. |-+|..+|.|.+||.
T Consensus 235 --~~~---~wSC~wDlde~h~---IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 235 --YNQ---IWSCCWDLDERHV---IYAGLQNGMVLVYDM 265 (463)
T ss_pred --cCC---ceeeeeccCCcce---eEEeccCceEEEEEc
Confidence 234 9999998765 35 889999999999985
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.001 Score=71.00 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=119.9
Q ss_pred CCeEEEee-CCCEEEEEecCCeEEEEcCCC----eeeEeEeecccceeEEEEecCCCEEEEEec-CCCCcccccceeEEE
Q 037368 26 GNITCCSS-GRGKVVIGCDDGAVSLLDRGL----KFNFGFQAHSSSVLFLQQLKQRNFLVTVGE-DEQVSAQQSAVCLKV 99 (823)
Q Consensus 26 ~~is~~~~-~~~~l~~gs~dG~i~~~d~~~----~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~-D~~~~~~~~~~~vkv 99 (823)
+.|+-++. -.+++++|+.||+++.|.+.. +.++.|.+|-+.|.+++.+-+|-.++|+++ |.. +|+
T Consensus 10 d~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs---------~Kv 80 (558)
T KOG0882|consen 10 DVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS---------VKV 80 (558)
T ss_pred ceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccc---------eeE
Confidence 34654444 568999999999999999433 456788999999999999999999999888 887 999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEe--
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQV-- 176 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~-- 176 (823)
+|+...+ .+.-+++. ..| ..+..+. +| |.....+|++ ..+|.|.++++-. ...+....
T Consensus 81 fDvEn~D----------minmiKL~--~lP-g~a~wv~-sk-Gd~~s~IAVs~~~sg~i~VvD~~~----d~~q~~~fkk 141 (558)
T KOG0882|consen 81 FDVENFD----------MINMIKLV--DLP-GFAEWVT-SK-GDKISLIAVSLFKSGKIFVVDGFG----DFCQDGYFKK 141 (558)
T ss_pred EEeeccc----------hhhhcccc--cCC-CceEEec-CC-CCeeeeEEeecccCCCcEEECCcC----CcCccceecc
Confidence 9998643 11122221 122 1122221 22 2111115555 4478899998631 11122222
Q ss_pred cCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCC-CcceEE-------------ccCCCccceecccCCCeEEE-e
Q 037368 177 DNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQP-PKRQFL-------------DNIGCSTNSVAMSDRLELII-G 240 (823)
Q Consensus 177 ~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~-~~~~~l-------------~~~~~~~~~~~~s~~~~liv-~ 240 (823)
-+-.||..+.+.+.+. .+.+.. .+-|-.|...+.- .|...+ ......+.|+.++|+|..+. -
T Consensus 142 lH~sPV~~i~y~qa~D--s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGD--SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccCceEEEEeecccc--ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 2368999999988773 333333 3348899876411 111100 11223456889999887553 3
Q ss_pred eCC-eEEEEecCC
Q 037368 241 RPE-AVYFYEVDG 252 (823)
Q Consensus 241 ~~~-~I~i~~~~g 252 (823)
..+ .|+++...+
T Consensus 220 ~~DrkVR~F~~Kt 232 (558)
T KOG0882|consen 220 NPDRKVRGFVFKT 232 (558)
T ss_pred CcccEEEEEEecc
Confidence 334 788877664
No 302
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.005 Score=67.48 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=45.4
Q ss_pred CCCcceEEEeecCCeEEEEEEcC--CeEEEEEecCCC---CcceEEccCCCccceecccCCCeEEEee-----CCeEEEE
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTP--NSVILFSLQNQP---PKRQFLDNIGCSTNSVAMSDRLELIIGR-----PEAVYFY 248 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~--~~V~~~d~~~~~---~~~~~l~~~~~~~~~~~~s~~~~liv~~-----~~~I~i~ 248 (823)
.++|-..+|-|.|....+..+.+ .++.+|.+..+. .....++. ...+.+.|+|.|+|++.. .+.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEE
Confidence 45666777777775444555543 358899887433 22333443 345678999999987532 3678999
Q ss_pred ecC
Q 037368 249 EVD 251 (823)
Q Consensus 249 ~~~ 251 (823)
|.+
T Consensus 523 D~~ 525 (698)
T KOG2314|consen 523 DTD 525 (698)
T ss_pred ecc
Confidence 876
No 303
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.54 E-value=0.00096 Score=68.89 Aligned_cols=192 Identities=11% Similarity=0.197 Sum_probs=114.0
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe---c----------CCCCcceEEEeecCCe-EEEEE
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV---D----------NQCSVMGLGFRVDGQA-LQLFA 198 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~---~----------~~~~It~l~fs~dg~~-~~l~~ 198 (823)
+.+|.|+..|.. +|+|..+|.|.++..+-.....-+...-+ + -+++|..+.|.++++. .+|.+
T Consensus 28 is~vef~~~Ge~---LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 28 ISAVEFDHYGER---LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred eeeEEeecccce---EeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 899999999999 99999999999996431110000111111 1 1578999999887643 56777
Q ss_pred EcCCeEEEEEecCCCCc----------------------------------ceEE-ccCCCccceecccCCCeEEEeeCC
Q 037368 199 VTPNSVILFSLQNQPPK----------------------------------RQFL-DNIGCSTNSVAMSDRLELIIGRPE 243 (823)
Q Consensus 199 ~t~~~V~~~d~~~~~~~----------------------------------~~~l-~~~~~~~~~~~~s~~~~liv~~~~ 243 (823)
+++.+|++|-+..+... .+++ ..|.+-+++++++.|++..++.|+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 78888999998654211 1111 134556777888888887777776
Q ss_pred -eEEEEecCCCCccccc-cC--C--------eEEEEeeC---cEEEEEEecCCCCccEEEEEeCCCCEEE----------
Q 037368 244 -AVYFYEVDGRGPCWAF-EG--E--------KKLLGWFR---GYLLCVIADQRNSKNIFNVYDLKNRLIA---------- 298 (823)
Q Consensus 244 -~I~i~~~~g~~~~~~~-~g--~--------~~~i~~~~---~ylv~~s~d~~~~~~~I~I~D~~~~~i~---------- 298 (823)
.|.+|+++-...++.+ +. + .+...++. +.++-.+ ..|+|++-|+...-++
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-----SKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-----SKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-----CCCcEEEeechhhhhhcchhhhhccc
Confidence 7999998744444321 10 0 01111222 2222222 4689999998632111
Q ss_pred --------EeccccceeEE-EeecCcEEEEEcCCeEEEEeecCh
Q 037368 299 --------HSLVVKEVSHM-LCEWGNIILVMTDKSVLCIGEKDM 333 (823)
Q Consensus 299 --------~~~~i~~v~~v-~~~~~~~~vvs~~~~v~~l~~~~~ 333 (823)
|++-+.++..+ |+ .++-|+++++--.+.+|..+.
T Consensus 260 edp~~rsffseiIsSISDvKFs-~sGryilsRDyltvk~wD~nm 302 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFS-HSGRYILSRDYLTVKLWDLNM 302 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEc-cCCcEEEEeccceeEEEeccc
Confidence 11112234444 44 445688888766666665443
No 304
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.53 E-value=0.0033 Score=65.15 Aligned_cols=196 Identities=15% Similarity=0.209 Sum_probs=121.9
Q ss_pred CcCCCCeEEEeeCC--CEEEEEecCCeEEEEc--C---CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccc
Q 037368 22 EEVSGNITCCSSGR--GKVVIGCDDGAVSLLD--R---GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSA 94 (823)
Q Consensus 22 ~~~~~~is~~~~~~--~~l~~gs~dG~i~~~d--~---~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~ 94 (823)
.+.+..++|+.+.. ..|+.|-..|++.-+. . .....+.+.+|.++|..+-|+....+++|+|.|..
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~------- 137 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ------- 137 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-------
Confidence 45577788888865 3689999999999887 2 23456788899999999999988999999999974
Q ss_pred eeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE
Q 037368 95 VCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL 174 (823)
Q Consensus 95 ~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~ 174 (823)
..|-..+.. .. +.... + ..+ .++..++-. + .-+|-..|.|...+... ..-+-...
T Consensus 138 ---~~~hc~e~~-------~~--lg~Y~-~--~~~---~t~~~~d~~--~---~fvGd~~gqvt~lr~~~--~~~~~i~~ 192 (404)
T KOG1409|consen 138 ---FAWHCTESG-------NR--LGGYN-F--ETP---ASALQFDAL--Y---AFVGDHSGQITMLKLEQ--NGCQLITT 192 (404)
T ss_pred ---eEEEeeccC-------Cc--ccceE-e--ecc---CCCCceeeE--E---EEecccccceEEEEEee--cCCceEEE
Confidence 357665422 10 11100 0 011 222222221 3 44555567777655321 00111222
Q ss_pred EecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCCCccceecccC-CCeEEE-eeCCeEEEEecC
Q 037368 175 QVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD-RLELII-GRPEAVYFYEVD 251 (823)
Q Consensus 175 ~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~-~~~liv-~~~~~I~i~~~~ 251 (823)
+..+.++|++++|.+.. ..|+.+. +..|..||+.++......+.+|...+..++..+ ..+++. +.++.|.+|+.+
T Consensus 193 ~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 34568899999998765 4677665 457999999876544444555555555443333 334444 345689999875
No 305
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.0034 Score=74.24 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=92.4
Q ss_pred ecCCeEEEEc-CCCeeeEeEeecc-cceeEEEEec------CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 42 CDDGAVSLLD-RGLKFNFGFQAHS-SSVLFLQQLK------QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 42 s~dG~i~~~d-~~~~~~~~~~~H~-~~V~~i~~~~------~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
.+...|+-+| ..|+++..|+.|. .+|..++-.. ..+.++-.+..+ +--||.+-. +
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~----------lfriDpR~~-------~ 563 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS----------LFRIDPRLS-------G 563 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCc----------eEEeccCCC-------C
Confidence 4567888889 7799999999987 4577776532 223444444443 888998742 1
Q ss_pred CCceEEE-EEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC-CCCcceEEEeecC
Q 037368 114 SPDCIGI-LRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDG 191 (823)
Q Consensus 114 ~~~~~~~-~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg 191 (823)
+ .++.. .+.+... ...+|+|-+.+| . ||+|+.+|.|+||+. .+.+.++.+.+ ..||++|..+.||
T Consensus 564 ~-k~v~~~~k~Y~~~---~~Fs~~aTt~~G-~---iavgs~~G~IRLyd~-----~g~~AKT~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 564 N-KLVDSQSKQYSSK---NNFSCFATTEDG-Y---IAVGSNKGDIRLYDR-----LGKRAKTALPGLGDPIIGIDVTADG 630 (794)
T ss_pred C-ceeeccccccccC---CCceEEEecCCc-e---EEEEeCCCcEEeecc-----cchhhhhcCCCCCCCeeEEEecCCC
Confidence 2 13221 1111111 238899988887 6 899999999999974 23334455544 7899999999999
Q ss_pred CeEEEEEEcCCeEEEEEe
Q 037368 192 QALQLFAVTPNSVILFSL 209 (823)
Q Consensus 192 ~~~~l~~~t~~~V~~~d~ 209 (823)
+ .+.++|..-+.+++.
T Consensus 631 k--wilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 K--WILATCKTYLLLIDT 646 (794)
T ss_pred c--EEEEeecceEEEEEE
Confidence 4 677788887888885
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=9.2e-05 Score=84.29 Aligned_cols=156 Identities=10% Similarity=0.138 Sum_probs=108.0
Q ss_pred CCeEEEeeCC--CEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 26 GNITCCSSGR--GKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 26 ~~is~~~~~~--~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
...+|+++.. .+|++|++.|.|++++ .+|....+..+|.++|+.+.-+.+|..+.|.|.-.. |+ ..+|++
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~---Pl----saLW~~ 1174 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS---PL----SALWDA 1174 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC---ch----HHHhcc
Confidence 4468888754 6999999999999999 778888899999999999999999999888775543 34 789999
Q ss_pred CCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC----
Q 037368 103 DKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN---- 178 (823)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~---- 178 (823)
... +.| .++++ +..+|.|+...+. -|+|+....+.+|+.. .+.+..+.+.+
T Consensus 1175 ~s~-------~~~--~Hsf~---------ed~~vkFsn~~q~---r~~gt~~d~a~~YDvq----T~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1175 SST-------GGP--RHSFD---------EDKAVKFSNSLQF---RALGTEADDALLYDVQ----TCSPLQTYLTDTVTS 1229 (1516)
T ss_pred ccc-------cCc--ccccc---------ccceeehhhhHHH---HHhcccccceEEEecc----cCcHHHHhcCcchhh
Confidence 741 122 22221 2678889887666 7888888888899864 23333332221
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEc
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLD 220 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~ 220 (823)
+-.=...+|+|+. ..+++ ++ .+||++... ..+.|+
T Consensus 1230 ~y~~n~a~FsP~D--~LIln---dG-vLWDvR~~~-aIh~FD 1264 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCD--TLILN---DG-VLWDVRIPE-AIHRFD 1264 (1516)
T ss_pred hhhccccccCCCc--ceEee---Cc-eeeeeccHH-HHhhhh
Confidence 1222567899987 34442 34 489987642 344444
No 307
>PLN03077 Protein ECB2; Provisional
Probab=97.47 E-value=0.14 Score=63.61 Aligned_cols=81 Identities=7% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhcCCHHHHHHHHHH---hCCh------HHHHHHHHHhhcCHHHHHHHHhcCChHHH--HH-HHHHHHHH
Q 037368 461 FDVETAIRVCRAANYHEHAMYVAKK---AGKH------ELYLKILLEDLGRYDEALQYISSLDPSQA--GV-TVKEYGKI 528 (823)
Q Consensus 461 ~d~~~ai~vl~~~g~~~~a~~la~~---~~~~------~~~l~il~~~~~~~~~al~yl~~l~~~~~--~~-~i~k~~~~ 528 (823)
+...+++..|-+.|..+++..+... .|-. ...++.+... +++++|.+.+.++..+++ +. +|.-|.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~~d~vs~~~mi~~~~-- 466 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC-KCIDKALEVFHNIPEKDVISWTSIIAGLR-- 466 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCeeeHHHHHHHHH--
Confidence 4455556666666666655555432 1111 1123444444 788888888887755432 11 222221
Q ss_pred HHhcCCHHHHHHHHHHh
Q 037368 529 LIEHKPMETIDILLRLC 545 (823)
Q Consensus 529 Ll~~~p~~~~~ll~~~~ 545 (823)
-....++++++|.++.
T Consensus 467 -~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 467 -LNNRCFEALIFFRQML 482 (857)
T ss_pred -HCCCHHHHHHHHHHHH
Confidence 2445667777776654
No 308
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.46 E-value=0.019 Score=71.97 Aligned_cols=186 Identities=9% Similarity=0.083 Sum_probs=108.3
Q ss_pred CCEEEEEe-cCCeEEEEcCCCeeeEeEeec--c---------------cceeEEEEec-CCCEEEEEecCCCCcccccce
Q 037368 35 RGKVVIGC-DDGAVSLLDRGLKFNFGFQAH--S---------------SSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 35 ~~~l~~gs-~dG~i~~~d~~~~~~~~~~~H--~---------------~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~ 95 (823)
++.|++++ ..+.|+.+|.....+.++.+- . ..-..++++| ++.+.+|.+.+++
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~-------- 706 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ-------- 706 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe--------
Confidence 45566655 456788888544445556331 0 1235799999 5677788888777
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEec-------cCCC--C-CCceEEEEEecCCC-CcceEEEEEeCCeEEEEEccc
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVF-------TSQF--P-EAKITSFLVLEEAP-PILLIAIGLDNGCIYCIKGDI 164 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~-------~~~~--p-~~~v~~va~~~d~~-~~~~ia~G~~dG~V~l~~~~~ 164 (823)
|++||..... +.++... .... . -..++.++++|++. . +++-+.++.|++|+.+-
T Consensus 707 -I~v~d~~~g~-----------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~L---YVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 707 -IWEYNISDGV-----------TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKEL---YIADSESSSIRALDLKT 771 (1057)
T ss_pred -EEEEECCCCe-----------EEEEecCCccccCCCCccccccccCccEEEEeCCCCEE---EEEECCCCeEEEEECCC
Confidence 9999986421 1111000 0000 0 01268899999987 4 55666688999998531
Q ss_pred ccccccceeEEec--------------CCC--------CcceEEEeecCCeEEEEEEc--CCeEEEEEecCCCCcceEEc
Q 037368 165 ARERITRFKLQVD--------------NQC--------SVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQPPKRQFLD 220 (823)
Q Consensus 165 ~~~~~~k~~~~~~--------------~~~--------~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~~~~~~l~ 220 (823)
+ ...++.. ..+ .-.+++|+++|+ ++++. ++.|++||..++. . ..+.
T Consensus 772 ----g-~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---LYVADs~N~rIrviD~~tg~-v-~tia 841 (1057)
T PLN02919 772 ----G-GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---IYVADSYNHKIKKLDPATKR-V-TTLA 841 (1057)
T ss_pred ----C-cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---EEEEECCCCEEEEEECCCCe-E-EEEe
Confidence 1 1111110 001 124889999883 45553 4569999986532 1 1221
Q ss_pred cCC--------------CccceecccCCCeEEEee--CCeEEEEecCCC
Q 037368 221 NIG--------------CSTNSVAMSDRLELIIGR--PEAVYFYEVDGR 253 (823)
Q Consensus 221 ~~~--------------~~~~~~~~s~~~~liv~~--~~~I~i~~~~g~ 253 (823)
+.| ..+..++++++|+++|+. ++.|++|+++..
T Consensus 842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 111 135567888999977653 468999998643
No 309
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.44 E-value=0.23 Score=60.26 Aligned_cols=254 Identities=10% Similarity=0.105 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHhc----CC--CHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC-CcCh-----HHH
Q 037368 332 DMESKLDMLFKKNLYTVAINLVQSQ----QA--DAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG-HLEP-----SYV 399 (823)
Q Consensus 332 ~~~~~i~~L~~~~~f~~Al~la~~~----~~--~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~-~~ep-----s~v 399 (823)
.....+.-|.+.+++++|+++-+.- .. +......+ ...+...++++.|.+.+..... .+.| ..+
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~l----l~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDAL----VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4567789999999999999987641 11 23333333 3344556788888887765522 2343 345
Q ss_pred HHHhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCC--CCCCcccCCHHHHHHHHHhcCCHH
Q 037368 400 IQKFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGE--DGVGEHKFDVETAIRVCRAANYHE 477 (823)
Q Consensus 400 I~kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~--~~~~~~~~d~~~ai~vl~~~g~~~ 477 (823)
|.-|...++++.-...+..+.++ +..-.+.|+..|.+.++.++-.++++.- .+.....+.....++.|.+.|..+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~---~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCC---CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 56666777777777777765432 3333456788888888765433333221 000011344566777777777777
Q ss_pred HHHHHHH---HhCC------hHHHHHHHHHhhcCHHHHHHHHhcCChHHH--HH-HHHHHHHHHHhcCCHHHHHHHHHHh
Q 037368 478 HAMYVAK---KAGK------HELYLKILLEDLGRYDEALQYISSLDPSQA--GV-TVKEYGKILIEHKPMETIDILLRLC 545 (823)
Q Consensus 478 ~a~~la~---~~~~------~~~~l~il~~~~~~~~~al~yl~~l~~~~~--~~-~i~k~~~~Ll~~~p~~~~~ll~~~~ 545 (823)
.+..+.. +.|- +..+++.+... |++++|.+++...+.+++ +. +|.-|. -...++++.++|.++.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~-g~~~~A~~vf~~m~~~~~vt~n~li~~y~---~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-GDIEDARCVFDGMPEKTTVAWNSMLAGYA---LHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHC-CCHHHHHHHHHhCCCCChhHHHHHHHHHH---hCCCHHHHHHHHHHHH
Confidence 6665532 2221 12345666655 899999999988765542 22 222232 2456788888887764
Q ss_pred hcCCCCcccCCCCCcccCCCCCHHH---HHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 546 TEDGESTKRGASSSTYMSMLPSPVD---FLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
.... .|+... ++..+.+ ..+.....++.+++..-. + +...+|.|+.+|...
T Consensus 318 ~~g~---------------~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~-d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 318 DSGV---------------SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-L-DIVANTALVDLYSKW 373 (697)
T ss_pred HcCC---------------CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-C-CeeehHHHHHHHHHC
Confidence 3221 233333 3444432 344555556666655322 2 357888899998764
No 310
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.43 E-value=0.11 Score=57.83 Aligned_cols=253 Identities=11% Similarity=0.051 Sum_probs=127.3
Q ss_pred eeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 32 SSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 32 ~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
...++.+++++.+|.|.-+| .+|+.+..++-.......... ++..++.++.|+. |..+|..+.+
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~---------l~ald~~tG~---- 126 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGE---------VIALDAEDGK---- 126 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCE---------EEEEECCCCc----
Confidence 34567899999999999999 789887555543322222332 4567777778886 8888886432
Q ss_pred CCCCCceEEEEEeccCCCCCCceEE-EEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc------
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITS-FLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM------ 183 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~-va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It------ 183 (823)
.+-.... + ..+.+ ..+. +.. +.+++.+|.|+.++.. .+ +..--.....+..
T Consensus 127 ------~~W~~~~-----~-~~~~~~p~v~--~~~---v~v~~~~g~l~a~d~~----tG-~~~W~~~~~~~~~~~~~~~ 184 (377)
T TIGR03300 127 ------ELWRAKL-----S-SEVLSPPLVA--NGL---VVVRTNDGRLTALDAA----TG-ERLWTYSRVTPALTLRGSA 184 (377)
T ss_pred ------Eeeeecc-----C-ceeecCCEEE--CCE---EEEECCCCeEEEEEcC----CC-ceeeEEccCCCceeecCCC
Confidence 2211111 1 00211 1222 235 6777789999998753 11 1111111111111
Q ss_pred eEEEeecCCeEEEEEEc-CCeEEEEEecCCC-CcceEEc-cCCC-c---cceeccc---CCCeEEE-eeCCeEEEEecCC
Q 037368 184 GLGFRVDGQALQLFAVT-PNSVILFSLQNQP-PKRQFLD-NIGC-S---TNSVAMS---DRLELII-GRPEAVYFYEVDG 252 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~-~~~~~l~-~~~~-~---~~~~~~s---~~~~liv-~~~~~I~i~~~~g 252 (823)
+... .++ .+++++ ++.+..+|..+.. ....... ..+. . +..+.-+ .++.+.+ +.++.++.|+.+.
T Consensus 185 sp~~-~~~---~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 185 SPVI-ADG---GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCEE-ECC---EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 1111 123 344444 4668888875422 1111110 0110 0 0011111 2455554 4567899998752
Q ss_pred CCccccccC-CeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEec-cccc--eeEEEeecCcEEEEEcCCeEEEE
Q 037368 253 RGPCWAFEG-EKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSL-VVKE--VSHMLCEWGNIILVMTDKSVLCI 328 (823)
Q Consensus 253 ~~~~~~~~g-~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~-~i~~--v~~v~~~~~~~~vvs~~~~v~~l 328 (823)
....+..+. ........++++.+.+ .++.|..+|..++.+.++. .+.. ........+.+|+.+.+|.++.+
T Consensus 261 G~~~W~~~~~~~~~p~~~~~~vyv~~-----~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 261 GRVLWKRDASSYQGPAVDDNRLYVTD-----ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CcEEEeeccCCccCceEeCCEEEEEC-----CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEE
Confidence 212232221 1122334567777665 3589999999877666544 2221 11111234456666667777666
Q ss_pred ee
Q 037368 329 GE 330 (823)
Q Consensus 329 ~~ 330 (823)
..
T Consensus 336 d~ 337 (377)
T TIGR03300 336 SR 337 (377)
T ss_pred EC
Confidence 53
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.041 Score=63.31 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=46.9
Q ss_pred eEEEeeCCC--EEEEEecCCeEEEEcCCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 28 ITCCSSGRG--KVVIGCDDGAVSLLDRGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 28 is~~~~~~~--~l~~gs~dG~i~~~d~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
+++.|-++. .|+.|=.-|.+.+|..+-+..++.. .|..+|+.+.|+++|+.|+|+-.-|. |.+|.++
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~---------v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGS---------VHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCce---------eEEEEee
Confidence 344555543 3466667788888885544444443 58889999999999999988766664 8888776
No 312
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.39 E-value=0.26 Score=59.79 Aligned_cols=177 Identities=12% Similarity=0.047 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhccHHHHHHHHHh---cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCC--cChHHHHHHhhchh
Q 037368 333 MESKLDMLFKKNLYTVAINLVQS---QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGH--LEPSYVIQKFLDAQ 407 (823)
Q Consensus 333 ~~~~i~~L~~~~~f~~Al~la~~---~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~--~eps~vI~kFl~~~ 407 (823)
....+..+.+.+.++.|.++-.. .+..++ ..++....+.+.+.|++++|.+.|-+.... .-+..+|.-|...+
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPD--QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 35556777777888877766543 344332 234455566777889999999998775321 12567788888888
Q ss_pred hHHHHHHHHHHHHHcCCCCh-hHHHHHHHHHHhcCChh---hHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHH
Q 037368 408 RIYNLTNYLEKLHEKGFASK-DHTTLLLNCYTKLKDVE---KLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVA 483 (823)
Q Consensus 408 ~~~~L~~YL~~l~~~~~~~~-~~~~lLl~~y~kl~~~~---~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la 483 (823)
+.+.-...+..+.+.+.... .-...++..+.++++.. ++...+.......+ .+-..+.+..+.+.|+.++|..+.
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD-TFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc-ceeHHHHHHHHHHCCCHHHHHHHH
Confidence 88777777777766665433 22344566667666543 33333332210011 233467788899999999999988
Q ss_pred HHhCChHH-----HHHHHHHhhcCHHHHHHHHhcC
Q 037368 484 KKAGKHEL-----YLKILLEDLGRYDEALQYISSL 513 (823)
Q Consensus 484 ~~~~~~~~-----~l~il~~~~~~~~~al~yl~~l 513 (823)
......+. .+..+... |++++|++++...
T Consensus 283 ~~m~~~~~vt~n~li~~y~~~-g~~~eA~~lf~~M 316 (697)
T PLN03081 283 DGMPEKTTVAWNSMLAGYALH-GYSEEALCLYYEM 316 (697)
T ss_pred HhCCCCChhHHHHHHHHHHhC-CCHHHHHHHHHHH
Confidence 87554322 35555555 8999999888664
No 313
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.39 E-value=0.14 Score=55.73 Aligned_cols=229 Identities=9% Similarity=0.049 Sum_probs=120.1
Q ss_pred EeeCCCEEEEEe----------cCCeEEEEc-CCCeeeEeEee----c---ccceeEEEEecCCCEEEEEecC--CCCcc
Q 037368 31 CSSGRGKVVIGC----------DDGAVSLLD-RGLKFNFGFQA----H---SSSVLFLQQLKQRNFLVTVGED--EQVSA 90 (823)
Q Consensus 31 ~~~~~~~l~~gs----------~dG~i~~~d-~~~~~~~~~~~----H---~~~V~~i~~~~~~~~l~s~s~D--~~~~~ 90 (823)
+...++.++++. .+..|.+|| .+++.++.+.- + ...-..+.++|+|++|....++ ..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~--- 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA--- 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE---
Confidence 334445665554 589999999 78888877763 2 2234578899999999877644 33
Q ss_pred cccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccc
Q 037368 91 QQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERIT 170 (823)
Q Consensus 91 ~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~ 170 (823)
|-|.|+... ..+..+.+.+ + ..-+..+++... +. +.||+......+-......
T Consensus 130 ------V~VvD~~~~----------kvv~ei~vp~---~---~~vy~t~e~~~~---~~--~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 130 ------VGVVDLEGK----------AFVRMMDVPD---C---YHIFPTANDTFF---MH--CRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ------EEEEECCCC----------cEEEEEeCCC---C---cEEEEecCCccE---EE--eecCceEEEEecCCCceEE
Confidence 999999853 2455554311 1 222333333222 22 2255444432210000000
Q ss_pred ceeEEecC------CCCcceEEEee-cCCeEEEEEEcCCeEEEEEecCCC-C---cceEEcc----CCCc---cceeccc
Q 037368 171 RFKLQVDN------QCSVMGLGFRV-DGQALQLFAVTPNSVILFSLQNQP-P---KRQFLDN----IGCS---TNSVAMS 232 (823)
Q Consensus 171 k~~~~~~~------~~~It~l~fs~-dg~~~~l~~~t~~~V~~~d~~~~~-~---~~~~l~~----~~~~---~~~~~~s 232 (823)
+...++.. ..| .|++ +| ..+|++..+.|.+.|+.+.. . +..++.. .+.. ...++++
T Consensus 183 ~~~~vf~~~~~~v~~rP----~~~~~dg--~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHP----AYSNKSG--RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred eeeeeecCCccccccCC----ceEcCCC--cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 01111111 233 4555 66 57899989889999976543 1 1111110 0111 1237888
Q ss_pred CCCe-EEEe---eC--------CeEEEEecCCCCcccc--ccCCeE--EEEeeCcEEEEEEecCCCCccEEEEEeCCCCE
Q 037368 233 DRLE-LIIG---RP--------EAVYFYEVDGRGPCWA--FEGEKK--LLGWFRGYLLCVIADQRNSKNIFNVYDLKNRL 296 (823)
Q Consensus 233 ~~~~-liv~---~~--------~~I~i~~~~g~~~~~~--~~g~~~--~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~ 296 (823)
+++. +.++ ++ +.|.++|......... ...... .++.++.+++.++.. ..+.|.|+|..+..
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~---~s~~VsViD~~t~k 333 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST---GDKTLYIFDAETGK 333 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC---CCCcEEEEECcCCe
Confidence 7665 4442 11 5788888764322222 222233 344566634444321 35789999998765
Q ss_pred EE
Q 037368 297 IA 298 (823)
Q Consensus 297 i~ 298 (823)
..
T Consensus 334 ~i 335 (352)
T TIGR02658 334 EL 335 (352)
T ss_pred EE
Confidence 43
No 314
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.0028 Score=68.36 Aligned_cols=166 Identities=12% Similarity=0.120 Sum_probs=101.4
Q ss_pred eEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEE
Q 037368 57 NFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSF 136 (823)
Q Consensus 57 ~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~v 136 (823)
...+..|.|.|+.+.|...|..|+|+|+|.+ |.+||-.+.. |. ++-.. ++. ..|.--
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~---------vv~WdW~~~~--------~~-l~f~S----GH~-~NvfQa 191 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQ---------VVVWDWVSGS--------PK-LSFES----GHC-NNVFQA 191 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccce---------EEeehhhccC--------cc-ccccc----ccc-cchhhh
Confidence 3456789999999999999999999999998 9999987532 21 10000 000 001111
Q ss_pred EEecCC--CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCC
Q 037368 137 LVLEEA--PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQP 213 (823)
Q Consensus 137 a~~~d~--~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~ 213 (823)
.|-|.. +. ++..+.||.|++-....+. ...+...+..+.++|.-++.-|+.. ..++.+..+ -|.-+|++...
T Consensus 192 KFiP~s~d~t---i~~~s~dgqvr~s~i~~t~-~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 192 KFIPFSGDRT---IVTSSRDGQVRVSEILETG-YVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred hccCCCCCcC---ceeccccCceeeeeecccc-ceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCC
Confidence 233322 34 8888889999976543110 0112233445689999999888653 345555544 47888887543
Q ss_pred CcceEE---ccCC---CccceecccC--CCeEEEeeC-CeEEEEecC
Q 037368 214 PKRQFL---DNIG---CSTNSVAMSD--RLELIIGRP-EAVYFYEVD 251 (823)
Q Consensus 214 ~~~~~l---~~~~---~~~~~~~~s~--~~~liv~~~-~~I~i~~~~ 251 (823)
+...+ ..+. ..++.++..| .++|+|++. ..+++|+..
T Consensus 267 -pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 267 -PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred -ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence 22222 1121 2456778777 446888765 478889754
No 315
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00052 Score=74.38 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=81.2
Q ss_pred CCCEEEEEecCCeEEEEc--CCCe------eeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLD--RGLK------FNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d--~~~~------~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
..+.+++++.|.+|++|+ ++|. +-.++++|+.+|..|-|..+-..++|| ||. +.+||....
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g---------iHlWDPFig 814 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG---------IHLWDPFIG 814 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc---------ceeeccccc
Confidence 346889999999999998 4443 445788999999999999988888876 554 999997643
Q ss_pred CC------C---CCC-------C-CCCce--------------------EEEEEeccCCCCCCceEEEEEecCCCCcceE
Q 037368 106 EP------E---GTS-------S-TSPDC--------------------IGILRVFTSQFPEAKITSFLVLEEAPPILLI 148 (823)
Q Consensus 106 ~~------~---~~~-------~-~~~~~--------------------~~~~~~~~~~~p~~~v~~va~~~d~~~~~~i 148 (823)
.. + +.. + ++|.. +..+++...+.|++-+.++++.|.|+. +
T Consensus 815 r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~---l 891 (1034)
T KOG4190|consen 815 RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNK---L 891 (1034)
T ss_pred chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcch---h
Confidence 21 0 100 0 11110 112333322334455899999999999 9
Q ss_pred EEEEeCCeEEEEEc
Q 037368 149 AIGLDNGCIYCIKG 162 (823)
Q Consensus 149 a~G~~dG~V~l~~~ 162 (823)
|+|..+|+|.+.+.
T Consensus 892 Aa~LSnGci~~LDa 905 (1034)
T KOG4190|consen 892 AAALSNGCIAILDA 905 (1034)
T ss_pred hHHhcCCcEEEEec
Confidence 99999999999874
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.28 E-value=0.033 Score=62.70 Aligned_cols=190 Identities=10% Similarity=0.053 Sum_probs=102.7
Q ss_pred eEEEeeCCC-E-EEEEec---CCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEE-EEecCCCCcccccceeEEEE
Q 037368 28 ITCCSSGRG-K-VVIGCD---DGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 28 is~~~~~~~-~-l~~gs~---dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvW 100 (823)
++-..++++ . ++..+. ...|.++| .+++.. .+....+.+....|+|+|+.|+ +.+.++. +- |-++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~---~~----Iy~~ 262 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQ---PD----IYLY 262 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCC---cE----EEEE
Confidence 333434443 3 554443 35688888 455543 4444556677788999997664 5554543 11 6666
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcccccccccce-eEEecC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGDIARERITRF-KLQVDN 178 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~~~~~~~~k~-~~~~~~ 178 (823)
|+... . .+.+. . .+ .....-.|+|||+. |+..+. .|.-.||..++ .+... ++...+
T Consensus 263 dl~~g--------~---~~~LT--~--~~-~~d~~p~~SPDG~~---I~F~Sdr~g~~~Iy~~dl---~~g~~~rlt~~g 320 (419)
T PRK04043 263 DTNTK--------T---LTQIT--N--YP-GIDVNGNFVEDDKR---IVFVSDRLGYPNIFMKKL---NSGSVEQVVFHG 320 (419)
T ss_pred ECCCC--------c---EEEcc--c--CC-CccCccEECCCCCE---EEEEECCCCCceEEEEEC---CCCCeEeCccCC
Confidence 76532 1 11222 1 11 11234579999998 888774 34445554443 12223 322322
Q ss_pred CCCcceEEEeecCCeEEEEEEcCC---------eEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee--CC--e
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPN---------SVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR--PE--A 244 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~---------~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~--~~--~ 244 (823)
. ....|+|||+ .+++++... .|.+.++.+.. .+.+...+ ......|+|||+.++ +. ++ .
T Consensus 321 ~---~~~~~SPDG~-~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~ 393 (419)
T PRK04043 321 K---NNSSVSTYKN-YIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSA 393 (419)
T ss_pred C---cCceECCCCC-EEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCC-CcCCeEECCCCCEEEEEEccCCcEE
Confidence 2 2348999996 466666432 47777876542 34443322 223468999998553 22 22 3
Q ss_pred EEEEecCCCC
Q 037368 245 VYFYEVDGRG 254 (823)
Q Consensus 245 I~i~~~~g~~ 254 (823)
+...+++|+.
T Consensus 394 L~~~~l~g~~ 403 (419)
T PRK04043 394 LGIIRLNYNK 403 (419)
T ss_pred EEEEecCCCe
Confidence 6666777653
No 317
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.22 E-value=0.19 Score=62.18 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH------HHHHHhhchhh
Q 037368 336 KLDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS------YVIQKFLDAQR 408 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps------~vI~kFl~~~~ 408 (823)
....+.+.++++.|++..+.. ...+. -.......+..+...|++++|...|-+.+... |. ..+.-+...++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC
Confidence 345666778888888876652 11111 12345556666777888888888877663321 21 12233344445
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhh----HHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHH
Q 037368 409 IYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEK----LNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAK 484 (823)
Q Consensus 409 ~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~----l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~ 484 (823)
...-..++.........+......+..+|.++++.+. +.+.++..+ ....-......++.+.|.+++|+...+
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---DSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5544555555444333444455556667776666432 333333322 111112233344556666666666655
Q ss_pred Hh----CChHH----HHHHHHHhhcCHHHHHHHHhcC
Q 037368 485 KA----GKHEL----YLKILLEDLGRYDEALQYISSL 513 (823)
Q Consensus 485 ~~----~~~~~----~l~il~~~~~~~~~al~yl~~l 513 (823)
+. ..+.. ...++... +++++|+.++..+
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~ 695 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSL 695 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 31 12111 12333333 6777777766654
No 318
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.20 E-value=0.62 Score=57.71 Aligned_cols=201 Identities=12% Similarity=0.106 Sum_probs=103.2
Q ss_pred HHHHHHhccHHHHHHHHHhc--CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHH------HHHHhhchhh
Q 037368 337 LDMLFKKNLYTVAINLVQSQ--QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSY------VIQKFLDAQR 408 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~--~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~------vI~kFl~~~~ 408 (823)
+..+++.++++.|+++.+.. ..|. ...++...|.-++..|++++|.+.|.+.+.. +|.. ...-+...++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSI-EPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHCCC
Confidence 45566778888888877652 1111 1245566677888889999999888877532 2211 1122333445
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhh----cCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHH
Q 037368 409 IYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFI----KGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAK 484 (823)
Q Consensus 409 ~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi----~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~ 484 (823)
.+.-..+++.+......+..-...+..+|.+.++.+.-..++ ...+ .+ ..........+...|.+++|+.+.+
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP--QE-IEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cc-hhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555544333333333334555666666654433333 2222 01 1112234455667777877777776
Q ss_pred Hh----CChHHH----HHHHHHhhcCHHHHHHHHhcC---ChHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHh
Q 037368 485 KA----GKHELY----LKILLEDLGRYDEALQYISSL---DPSQAGVTVKEYGKILI-EHKPMETIDILLRLC 545 (823)
Q Consensus 485 ~~----~~~~~~----l~il~~~~~~~~~al~yl~~l---~~~~~~~~i~k~~~~Ll-~~~p~~~~~ll~~~~ 545 (823)
.. ..+..+ ..++.. .+++++|+.++.+. .+.+ ...+...+..+. ...+++++..+.+..
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLA-AGDLNKAVSSFKKLLALQPDS-ALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 222221 223333 37888888877653 2211 122333333222 345566666665543
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.18 E-value=0.0012 Score=46.75 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.7
Q ss_pred eEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 117 CIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 117 ~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
++++++.+ ..+ |++++|+|++.. +|+|+.||+|++|+
T Consensus 3 ~~~~~~~h--~~~---i~~i~~~~~~~~---~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGH--SSS---INSIAWSPDGNF---LASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESS--SSS---EEEEEEETTSSE---EEEEETTSEEEEEE
T ss_pred EEEEEcCC--CCc---EEEEEEeccccc---ceeeCCCCEEEEEC
Confidence 45566633 334 999999999999 99999999999996
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0011 Score=45.39 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=35.2
Q ss_pred CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 54 LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 54 ~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
++.+..+.+|...|.++.+.+.+.++++++.|+. +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~---------~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT---------IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe---------EEEcC
Confidence 4567788999999999999999999999999998 99996
No 321
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.0031 Score=71.10 Aligned_cols=145 Identities=10% Similarity=0.100 Sum_probs=90.8
Q ss_pred CEEEEEecCCeEEEEc---CCCe-eeEeEeecccceeEEEEecCC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLD---RGLK-FNFGFQAHSSSVLFLQQLKQR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d---~~~~-~~~~~~~H~~~V~~i~~~~~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
.+-++.+....-.+|+ ++.+ +...+.+|+..|+.|-|.|.. ..|+||+-|.. |..||+....
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~---------vh~wd~rSp~---- 148 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY---------VHAWDMRSPH---- 148 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccccc---------ceeeeccCCC----
Confidence 3566777777788898 3333 334557899999999999865 67999999986 9999998532
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEcccccccccc-eeEEecCCCCcceEEEe
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARERITR-FKLQVDNQCSVMGLGFR 188 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k-~~~~~~~~~~It~l~fs 188 (823)
.| +....... ...+.|+|+- ++.. +|. +....|.+|+.. .++- ...+..+-..|.++.|.
T Consensus 149 ---~p--~ys~~~w~-----s~asqVkwnyk~p~v---las-shg~~i~vwd~r----~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 149 ---RP--FYSTSSWR-----SAASQVKWNYKDPNV---LAS-SHGNDIFVWDLR----KGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred ---cc--eeeeeccc-----ccCceeeecccCcch---hhh-ccCCceEEEecc----CCCcceEEecccceeeehHHHh
Confidence 33 22222111 2267788864 4444 554 446678899752 2222 22233344567777775
Q ss_pred ecCCeEEEEEEcCCeEEEEEecC
Q 037368 189 VDGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 189 ~dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
.--.+.++..++++.|..|+-+.
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccc
Confidence 43211344555677899999764
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.09 E-value=0.16 Score=61.24 Aligned_cols=196 Identities=13% Similarity=0.196 Sum_probs=111.4
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP 144 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~ 144 (823)
..|.++.|..+++-++-+..+|. |-+-|....+ -.++..+. ..|.+.+|+||...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~---------iilvd~et~~--------~eivg~vd--------~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGD---------IILVDPETLE--------LEIVGNVD--------NGISAASWSPDEEL 123 (1265)
T ss_pred cceEEEEEecccceEEEEecCCc---------EEEEcccccc--------eeeeeecc--------CceEEEeecCCCcE
Confidence 57999999998888888888887 6666776432 11333322 33999999999998
Q ss_pred cceEEEEEeCCeEEEEEccc--cccc-----------------ccceeEEec---------------------CCCCcce
Q 037368 145 ILLIAIGLDNGCIYCIKGDI--ARER-----------------ITRFKLQVD---------------------NQCSVMG 184 (823)
Q Consensus 145 ~~~ia~G~~dG~V~l~~~~~--~~~~-----------------~~k~~~~~~---------------------~~~~It~ 184 (823)
+|..++.+++.+-..++ ..++ |.+...+.. ..+.=++
T Consensus 124 ---l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~ 200 (1265)
T KOG1920|consen 124 ---LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTS 200 (1265)
T ss_pred ---EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCce
Confidence 88888788887643211 0000 001111110 0122346
Q ss_pred EEEeecCCeEEEEEE-----cC-CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEEe-----eCCeEEEEecCCC
Q 037368 185 LGFRVDGQALQLFAV-----TP-NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG-----RPEAVYFYEVDGR 253 (823)
Q Consensus 185 l~fs~dg~~~~l~~~-----t~-~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~-----~~~~I~i~~~~g~ 253 (823)
|+|++||+ +++++ ++ ..|++||.++. ...+-+.....-.|++|-|.|.++++ +++.|.++..+|-
T Consensus 201 IsWRgDg~--~fAVs~~~~~~~~RkirV~drEg~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 201 ISWRGDGE--YFAVSFVESETGTRKIRVYDREGA--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred EEEccCCc--EEEEEEEeccCCceeEEEecccch--hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 99999994 33332 33 45999998742 11111111111247899999987654 2356999987763
Q ss_pred Ccc-cccc-----CCeEEEEee--CcEEEEEEecCCCCccEEEEEeCCC
Q 037368 254 GPC-WAFE-----GEKKLLGWF--RGYLLCVIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 254 ~~~-~~~~-----g~~~~i~~~--~~ylv~~s~d~~~~~~~I~I~D~~~ 294 (823)
.+. +.++ ++...+.|. ++-|+++.... ....|.+|-..|
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~--e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNL--ENSLVQLWTTGN 323 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeeccc--ccceEEEEEecC
Confidence 221 2221 223467775 34555543321 233477776655
No 323
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.08 E-value=0.64 Score=50.61 Aligned_cols=94 Identities=6% Similarity=-0.079 Sum_probs=62.1
Q ss_pred CeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEec----------CCCCcccccceeEEEEeCCCCCCCCCCCC
Q 037368 45 GAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGE----------DEQVSAQQSAVCLKVFDLDKMEPEGTSST 113 (823)
Q Consensus 45 G~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~----------D~~~~~~~~~~~vkvWdl~~~~~~~~~~~ 113 (823)
|+|.+.| .+++.+.++..=..+-. + ++|+|+.|..|.. ++. |.|||+.+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~---------V~v~D~~t~~------- 88 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDY---------VEVIDPQTHL------- 88 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCE---------EEEEECccCc-------
Confidence 8999999 67888777764322222 4 8899998866655 444 9999998542
Q ss_pred CCceEEEEEeccCCC--CCCceEEEEEecCCCCcceEEEEE-e-CCeEEEEEc
Q 037368 114 SPDCIGILRVFTSQF--PEAKITSFLVLEEAPPILLIAIGL-D-NGCIYCIKG 162 (823)
Q Consensus 114 ~~~~~~~~~~~~~~~--p~~~v~~va~~~d~~~~~~ia~G~-~-dG~V~l~~~ 162 (823)
.++.+.+...+. .......++++|||+. +.+.. . ++.|.++|.
T Consensus 89 ---~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~---l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 89 ---PIADIELPEGPRFLVGTYPWMTSLTPDNKT---LLFYQFSPSPAVGVVDL 135 (352)
T ss_pred ---EEeEEccCCCchhhccCccceEEECCCCCE---EEEecCCCCCEEEEEEC
Confidence 455555321100 0012468999999988 77554 4 688888885
No 324
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.016 Score=69.08 Aligned_cols=231 Identities=19% Similarity=0.287 Sum_probs=137.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHhc-C----CCH---HH--------------HHHHHHHHhhhhccCCCHHHHHHHHHH--
Q 037368 334 ESKLDMLFKKNLYTVAINLVQSQ-Q----ADA---AA--------------TAEVLRKYGDHLYSKQDYDEAMSQYIL-- 389 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~~-~----~~~---~~--------------~~~I~~~y~d~L~~k~~y~~A~~~y~~-- 389 (823)
..-+..+-.||++++||++-... . .+. .. ...+--.|+++..++. -+++++.|..
T Consensus 508 ~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~-p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 508 RELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKN-PEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccC-chhheeeeeccC
Confidence 44456666778888888876642 1 110 00 1122234555555443 3455555544
Q ss_pred --HhCCcChHHHHHHhhchhhHHHHHHHHHHHHHcC-C-CChhHHHHHHHHHHhcC-C---------------hhhHHHh
Q 037368 390 --TIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKG-F-ASKDHTTLLLNCYTKLK-D---------------VEKLNMF 449 (823)
Q Consensus 390 --ti~~~eps~vI~kFl~~~~~~~L~~YL~~l~~~~-~-~~~~~~~lLl~~y~kl~-~---------------~~~l~~f 449 (823)
..+++.+ ..+..|+++.....+++||+.+.... . .+.-|+.++.-...+.. . .+++..|
T Consensus 587 ~~~~~sis~-~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 587 KQEAESISR-DDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred hhhhccCCH-HHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 2334444 34466777788889999999976432 2 33446654432222222 0 2456666
Q ss_pred hcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhcCCh-----HHHHHHHHH
Q 037368 450 IKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISSLDP-----SQAGVTVKE 524 (823)
Q Consensus 450 i~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~l~~-----~~~~~~i~k 524 (823)
+...+ .|+.+..++-+...+.+++...+.-+.++|+.+|.|++...++++.|..|+...-. .+.+..+.
T Consensus 666 l~~s~-----~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL- 739 (877)
T KOG2063|consen 666 LESSD-----LYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLL- 739 (877)
T ss_pred hhhhc-----ccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHH-
Confidence 66554 68888888888888888877666679999999999999999999999999986422 22222222
Q ss_pred HHHHHHhc------CCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHHHhhhccCc--HHHHHHHHHHHhh
Q 037368 525 YGKILIEH------KPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVHHP--ESLMDFLEKYTNK 592 (823)
Q Consensus 525 ~~~~Ll~~------~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~yLe~~i~~ 592 (823)
+.++.. .|-...++|.+.. .++++..++..+.+.. ..+..|+..++..
T Consensus 740 --~~~l~~~~d~~~~~~~il~~l~~h~------------------~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~ 795 (877)
T KOG2063|consen 740 --RIYLNPIHDYKSGPLYILNFLQKHA------------------DRLDLAQVLKLLPDDISLKDLCSFLSKLLRK 795 (877)
T ss_pred --HHHhcchhhccccchhhhhHHHhhh------------------hhcCHHHHHHhCCccCcHhHHHHHHHHHHHH
Confidence 222222 3334444333321 3577777777776532 3455666666654
No 325
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=97.07 E-value=0.0014 Score=51.65 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHH-hCCcChHHHHHHhhc----hhhHHHHHHHHHHH
Q 037368 363 TAEVLRKYGDHLYSKQDYDEAMSQYILT-IGHLEPSYVIQKFLD----AQRIYNLTNYLEKL 419 (823)
Q Consensus 363 ~~~I~~~y~d~L~~k~~y~~A~~~y~~t-i~~~eps~vI~kFl~----~~~~~~L~~YL~~l 419 (823)
.+.++.+..+.||+.|+|.+||+..+.+ -|.++..++|.||.. +++...|..|+..|
T Consensus 5 ad~l~~~~F~~l~~~g~y~eAA~~AA~sP~giLRt~~Ti~rFk~~p~~pGq~splL~YF~~L 66 (66)
T PF13838_consen 5 ADDLYVQQFNELFSQGQYEEAAKVAANSPRGILRTPETINRFKQVPAQPGQPSPLLQYFGAL 66 (66)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHSGGGTT-SHHHHHHHHTS---TTS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhCccchhcCHHHHHHHHcCCCCCCCCCHHHHHHhhC
Confidence 4567888899999999999999999998 568898999999976 45677899999865
No 326
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.97 E-value=0.042 Score=60.05 Aligned_cols=186 Identities=11% Similarity=0.052 Sum_probs=108.1
Q ss_pred EecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCC--CcccccceeEEEEeCCCCCCCCCCCCCCce
Q 037368 41 GCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQ--VSAQQSAVCLKVFDLDKMEPEGTSSTSPDC 117 (823)
Q Consensus 41 gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~--~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~ 117 (823)
+...+++++|. +.+..+.+-.-....=.++.|.+.|++|+..-+-.+ ++.-+-+--+-|.++...+
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------- 266 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------- 266 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-----------
Confidence 45778888888 544443222222334456778888888765443322 0100001125555555321
Q ss_pred EEEEEec-cCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEE
Q 037368 118 IGILRVF-TSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQL 196 (823)
Q Consensus 118 ~~~~~~~-~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l 196 (823)
+++. +...| |..++|.|.++. ++++.|...-++.+++. ++ +.+. .-.+.+=..+.|+|.++ ++|
T Consensus 267 ---i~V~~~~~~p---Vhdf~W~p~S~~-F~vi~g~~pa~~s~~~l-----r~-Nl~~-~~Pe~~rNT~~fsp~~r-~il 331 (561)
T COG5354 267 ---IPVEKDLKDP---VHDFTWEPLSSR-FAVISGYMPASVSVFDL-----RG-NLRF-YFPEQKRNTIFFSPHER-YIL 331 (561)
T ss_pred ---cceecccccc---ceeeeecccCCc-eeEEecccccceeeccc-----cc-ceEE-ecCCcccccccccCccc-EEE
Confidence 1111 22345 999999999886 44555666777777764 22 2222 22345566788999885 566
Q ss_pred EEEcC---CeEEEEEecCCCCcceEEccCCCccceecccCCCeEEE-ee-------CCeEEEEecCCCC
Q 037368 197 FAVTP---NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELII-GR-------PEAVYFYEVDGRG 254 (823)
Q Consensus 197 ~~~t~---~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv-~~-------~~~I~i~~~~g~~ 254 (823)
+++-+ +.|-+|+..++-.....+.+.+ ..-+-|+|||+|+- +. |..|.+|++.|..
T Consensus 332 ~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 332 FAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred EecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 66644 3599999877643333344332 23467999999763 32 4589999998653
No 327
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.85 E-value=0.12 Score=56.12 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=94.3
Q ss_pred CCEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTS 114 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~ 114 (823)
++.+++-| .|...+.+...... .=-+|.+.|.-..+..+++-++-+..||. + +-|+|.+..+
T Consensus 332 Gd~ia~VS-RGkaFi~~~~~~~~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD-~-------l~iyd~~~~e-------- 393 (668)
T COG4946 332 GDYIALVS-RGKAFIMRPWDGYS-IQVGKKGGVRYRRIQVDPEGDVIGTNDGD-K-------LGIYDKDGGE-------- 393 (668)
T ss_pred CcEEEEEe-cCcEEEECCCCCee-EEcCCCCceEEEEEccCCcceEEeccCCc-e-------EEEEecCCce--------
Confidence 45566654 78888888554432 11268888988888777777888888884 1 9999988432
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC-CCCcceEEEeecCCe
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDGQA 193 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg~~ 193 (823)
+..+. . +-+.|-+++++|||.. ++++-..+.+-+++.+ . .+.+.+-.+ .+-|+...|+|++
T Consensus 394 ---~kr~e--~---~lg~I~av~vs~dGK~---~vvaNdr~el~vidid----n-gnv~~idkS~~~lItdf~~~~ns-- 455 (668)
T COG4946 394 ---VKRIE--K---DLGNIEAVKVSPDGKK---VVVANDRFELWVIDID----N-GNVRLIDKSEYGLITDFDWHPNS-- 455 (668)
T ss_pred ---EEEee--C---CccceEEEEEcCCCcE---EEEEcCceEEEEEEec----C-CCeeEecccccceeEEEEEcCCc--
Confidence 22221 1 1144999999999999 9988655666555553 2 234444333 6789999999988
Q ss_pred EEEEEEcCC-----eEEEEEecCC
Q 037368 194 LQLFAVTPN-----SVILFSLQNQ 212 (823)
Q Consensus 194 ~~l~~~t~~-----~V~~~d~~~~ 212 (823)
..++-+-.. .|.+||+.+.
T Consensus 456 r~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 456 RWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred eeEEEecCcceeeeeEEEEecCCC
Confidence 455555432 4999999864
No 328
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.84 E-value=0.0054 Score=68.92 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=95.5
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCC--CCc---eEEEEEeccCCCCCCceEEEEEe
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSST--SPD---CIGILRVFTSQFPEAKITSFLVL 139 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~--~~~---~~~~~~~~~~~~p~~~v~~va~~ 139 (823)
....|+.|.....++|.+|.||. +||--+.+.....++.| .+. ..+++..| . +.|..++|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGl---------LKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH--~---~sV~vvTWN 80 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGL---------LKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH--N---ASVMVVTWN 80 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccce---------eEEEEccccCCcccccccccccccchhhhhccC--c---ceEEEEEec
Confidence 56889999999999999999997 99988875432211111 110 11233322 1 349999999
Q ss_pred cCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe-cCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcce
Q 037368 140 EEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV-DNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQ 217 (823)
Q Consensus 140 ~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~-~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~ 217 (823)
.+.+. +-+.-.+|-|++|-.- ...+.-..+- ..++-|.+++|+.||+ .++++.. +.|.+=.++++....+
T Consensus 81 e~~QK---LTtSDt~GlIiVWmly---kgsW~EEMiNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgK 152 (1189)
T KOG2041|consen 81 ENNQK---LTTSDTSGLIIVWMLY---KGSWCEEMINNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGK 152 (1189)
T ss_pred ccccc---ccccCCCceEEEEeee---cccHHHHHhhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecch
Confidence 99998 8888889999998421 0011100011 1246688999999994 4555544 3466666665432222
Q ss_pred EEccCCCccceecccCCCeEEE-ee-CCeEEEEecC
Q 037368 218 FLDNIGCSTNSVAMSDRLELII-GR-PEAVYFYEVD 251 (823)
Q Consensus 218 ~l~~~~~~~~~~~~s~~~~liv-~~-~~~I~i~~~~ 251 (823)
.+. |..+.-+.||+|.+.+. +- .+.+.+|+..
T Consensus 153 eLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 153 ELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred hcc--hheccceeecccHHHHHhhhcCCcEEEeccc
Confidence 221 22233456777665432 21 2345555543
No 329
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.83 E-value=0.3 Score=50.66 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=100.7
Q ss_pred CeEEEee-CCCEEEEEecCCeEEEEc-CCCeeeEeEee-----cccceeEEEEecCCCEEEEEecCCCCcccccceeEEE
Q 037368 27 NITCCSS-GRGKVVIGCDDGAVSLLD-RGLKFNFGFQA-----HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV 99 (823)
Q Consensus 27 ~is~~~~-~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~-----H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv 99 (823)
...++.. .++.++++...|. .++| .+++....+.. .....+.++++|+|++.+|.+........ +.-.|-.
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~-~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI-DPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG-GSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccc-cccceEE
Confidence 4555555 5688888887665 4448 55654433332 23578999999999988887654321100 0001333
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEE-EEEeCCeEEEEEcccccccccceeEEecC
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIA-IGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia-~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
++... .+....... .. ...++|+||++. +. +-+..+.|..++.+.....-...+++...
T Consensus 120 ~~~~~-----------~~~~~~~~~--~~----pNGi~~s~dg~~---lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~ 179 (246)
T PF08450_consen 120 IDPDG-----------KVTVVADGL--GF----PNGIAFSPDGKT---LYVADSFNGRIWRFDLDADGGELSNRRVFIDF 179 (246)
T ss_dssp EETTS-----------EEEEEEEEE--SS----EEEEEEETTSSE---EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-
T ss_pred ECCCC-----------eEEEEecCc--cc----ccceEECCcchh---eeecccccceeEEEeccccccceeeeeeEEEc
Confidence 34331 111112111 22 689999999986 54 45667777777653100000112333322
Q ss_pred -C--CCcceEEEeecCCeEEEEEE--cCCeEEEEEecCCCCcceEEccCCCccceeccc-CC-CeEEE
Q 037368 179 -Q--CSVMGLGFRVDGQALQLFAV--TPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMS-DR-LELII 239 (823)
Q Consensus 179 -~--~~It~l~fs~dg~~~~l~~~--t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s-~~-~~liv 239 (823)
. +...++++..+|+ |+++ ..++|..++.+++ ....+.-....+.+++|. ++ +++.|
T Consensus 180 ~~~~g~pDG~~vD~~G~---l~va~~~~~~I~~~~p~G~--~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 180 PGGPGYPDGLAVDSDGN---LWVADWGGGRIVVFDPDGK--LLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSSCEEEEEEEBTTS----EEEEEETTTEEEEEETTSC--EEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred CCCCcCCCcceEcCCCC---EEEEEcCCCEEEEECCCcc--EEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 2 2378999998883 5555 5678999998754 334443223466778884 44 44444
No 330
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.81 E-value=0.02 Score=60.75 Aligned_cols=159 Identities=10% Similarity=0.161 Sum_probs=91.7
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP 144 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~ 144 (823)
..+..+.+++++.+||.+-.+.. ..+.++....+ .-.++.... .| ...+++.|..+...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~---------~~~f~~~~~~~------~~kl~~~~~-----v~-~~~~ai~~~~~~~s 121 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQ---------RAVFDYRENPK------GAKLLDVSC-----VP-KRPTAISFIREDTS 121 (390)
T ss_pred ccccccccCCCceEEEEEeCCCc---------eEEEEEecCCC------cceeeeEee-----cc-cCcceeeeeeccce
Confidence 34555666777777776655543 55777764321 011222211 11 12466666666555
Q ss_pred cceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEccCC
Q 037368 145 ILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLDNIG 223 (823)
Q Consensus 145 ~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~ 223 (823)
+.++-..|.++.++.. .....+.+.+..+-.-++.|+|++|++ .+..+. +..|++-....-......+-+|.
T Consensus 122 ---v~v~dkagD~~~~di~--s~~~~~~~~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~ 194 (390)
T KOG3914|consen 122 ---VLVADKAGDVYSFDIL--SADSGRCEPILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHK 194 (390)
T ss_pred ---EEEEeecCCceeeeee--cccccCcchhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccH
Confidence 6666667777766532 111134444555667899999999984 455454 44687766543221222233566
Q ss_pred CccceecccCCCeEEEee-CCeEEEEecC
Q 037368 224 CSTNSVAMSDRLELIIGR-PEAVYFYEVD 251 (823)
Q Consensus 224 ~~~~~~~~s~~~~liv~~-~~~I~i~~~~ 251 (823)
.-|..++.-++..++.|+ |+++++|+..
T Consensus 195 eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 195 EFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred hheeeeeeccCceeeecCCCCcEEEEecc
Confidence 667766766666667654 5699999987
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.79 E-value=0.61 Score=52.25 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=121.0
Q ss_pred eeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeE-EEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 32 SSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLF-LQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 32 ~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~-i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
+..++.+++|+.+|.+.-+| .+|+.+.+++... .+.+ ..+ .+ ..++.++.|+. |...|....+
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~-~~v~v~~~~g~---------l~ald~~tG~--- 181 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SD-GLVLVHTSNGM---------LQALNESDGA--- 181 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-EC-CEEEEECCCCE---------EEEEEccCCC---
Confidence 34567888999999999999 6898876555432 2221 111 13 34444555665 6666765321
Q ss_pred CCCCCCceEEEEEeccCCCCCC---ceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec-CCCC----
Q 037368 110 TSSTSPDCIGILRVFTSQFPEA---KITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-NQCS---- 181 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~~---~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-~~~~---- 181 (823)
.+=..... .|.. ...+-++.. .. +.+|+.+|.+..++..-- ...++...-.. ....
T Consensus 182 -------~~W~~~~~---~~~~~~~~~~sP~v~~--~~---v~~~~~~g~v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 182 -------VKWTVNLD---VPSLTLRGESAPATAF--GG---AIVGGDNGRVSAVLMEQG-QLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred -------EeeeecCC---CCcccccCCCCCEEEC--CE---EEEEcCCCEEEEEEccCC-hhhheeccccCCCccchhcc
Confidence 11111100 0000 001111222 24 666777888877653200 00011000000 0000
Q ss_pred --c-ceEEEeecCCeEEEEEEc-CCeEEEEEecCCCCcceEEc-cCCCccceecccCCCeEEE-eeCCeEEEEecCCCCc
Q 037368 182 --V-MGLGFRVDGQALQLFAVT-PNSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLELII-GRPEAVYFYEVDGRGP 255 (823)
Q Consensus 182 --I-t~l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~liv-~~~~~I~i~~~~g~~~ 255 (823)
+ .+-.. .++ .+++++ ++.+..+|..+.. .... ..+.. ..... .++.+.+ ..++.++.++...-..
T Consensus 246 ~~~~~sP~v-~~~---~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 246 VDVDTTPVV-VGG---VVYALAYNGNLVALDLRSGQ---IVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred cccCCCcEE-ECC---EEEEEEcCCeEEEEECCCCC---EEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcE
Confidence 0 11111 123 344444 5568888876432 1111 11111 11111 2455444 3456777777652111
Q ss_pred ccccc---CC-eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccc--ee-EEEeecCcEEEEEcCCeEEEE
Q 037368 256 CWAFE---GE-KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKE--VS-HMLCEWGNIILVMTDKSVLCI 328 (823)
Q Consensus 256 ~~~~~---g~-~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~--v~-~v~~~~~~~~vvs~~~~v~~l 328 (823)
.+..+ +. .......+.++++.+ .++.|.++|..++.+..+..+.. +. ......+.+|+.+.+|.++.+
T Consensus 317 ~W~~~~~~~~~~~sp~v~~g~l~v~~-----~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 317 LWSQSDLLHRLLTAPVLYNGYLVVGD-----SEGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAI 391 (394)
T ss_pred EEcccccCCCcccCCEEECCEEEEEe-----CCCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEE
Confidence 12111 11 111223467777766 35899999998877766554432 11 112346789999999999987
Q ss_pred e
Q 037368 329 G 329 (823)
Q Consensus 329 ~ 329 (823)
.
T Consensus 392 ~ 392 (394)
T PRK11138 392 T 392 (394)
T ss_pred e
Confidence 5
No 332
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.70 E-value=0.0053 Score=61.34 Aligned_cols=152 Identities=16% Similarity=0.246 Sum_probs=88.9
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEcCCC--eeeEeEee-cccceeEEEEecCCCEEEEEe------cCCCCcccccceeEE
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLDRGL--KFNFGFQA-HSSSVLFLQQLKQRNFLVTVG------EDEQVSAQQSAVCLK 98 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d~~~--~~~~~~~~-H~~~V~~i~~~~~~~~l~s~s------~D~~~~~~~~~~~vk 98 (823)
-+.++.+++.+++|..||.+-+.+... ...+...+ |.+. -+.+....++.+.|.+ .|. .+
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~----------~~ 162 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDN----------FY 162 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccc----------ee
Confidence 344556677899999999999998321 11111111 2221 1122223455554433 232 66
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
+|+++... ++..... ....|++++-+|..+. -+++|+.+|.|-+|+.. ........+..+
T Consensus 163 a~~~~p~~-------------t~~~~~~--~~~~v~~l~~hp~qq~--~v~cgt~dg~~~l~d~r---n~~~p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIK-------------TLIPSKK--ALDAVTALCSHPAQQH--LVCCGTDDGIVGLWDAR---NVAMPVSLLKAH 222 (319)
T ss_pred eecccccc-------------ccccccc--ccccchhhhCCccccc--EEEEecCCCeEEEEEcc---cccchHHHHHHh
Confidence 77776421 1111110 0123899999996543 18899999999999863 222222233456
Q ss_pred CCCcceEEEeecCCeEEEEEEcC-CeEEEEEecC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQN 211 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~ 211 (823)
+.+|+.+.|.|... ..||+++. +.++-||-.+
T Consensus 223 k~~i~eV~FHpk~p-~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNP-EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCc-hheeEecCCCcEEEEcCCC
Confidence 88999999998764 35666665 5588898664
No 333
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.68 E-value=0.073 Score=53.67 Aligned_cols=182 Identities=12% Similarity=0.009 Sum_probs=103.0
Q ss_pred CEEEEEecCCeEEEEcCCCee--eEeEeecccce---eEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRGLKF--NFGFQAHSSSV---LFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~~~~--~~~~~~H~~~V---~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
+.|+.|+..|...+|..+.+. .+....|...| ...+.. .--+.-++.|.| +|+.+++...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~--~~~~~i~sndht---------~k~~~~~~~s---- 149 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL--KFPLNIASNDHT---------GKTMVVSGDS---- 149 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc--ccceeeccCCcc---------eeEEEEecCc----
Confidence 588999999999999954332 22333343322 223322 123566789998 8888887421
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--CCCCcceEEEe
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD--NQCSVMGLGFR 188 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~--~~~~It~l~fs 188 (823)
.+.. ++ .|.-.+.++++++|++. .++.+....|-+|..+ ++ +.+...+.+ .+..=-+.+|+
T Consensus 150 -------~~~~-~h---~~~~~~ns~~~snd~~~---~~~Vgds~~Vf~y~id--~~-sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 150 -------NKFA-VH---NQNLTQNSLHYSNDPSW---GSSVGDSRRVFRYAID--DE-SEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred -------ccce-ee---ccccceeeeEEcCCCce---EEEecCCCcceEEEeC--Cc-cceeeeeEecccCCCceeeeec
Confidence 1111 11 11111788999999999 9988888888888765 11 112111221 12233355666
Q ss_pred ecCCeEEEEEEc-CCeEEEEEecCCCCcceEE----ccCCCccceecccCCCe---EEEee-CCeEEEEecC
Q 037368 189 VDGQALQLFAVT-PNSVILFSLQNQPPKRQFL----DNIGCSTNSVAMSDRLE---LIIGR-PEAVYFYEVD 251 (823)
Q Consensus 189 ~dg~~~~l~~~t-~~~V~~~d~~~~~~~~~~l----~~~~~~~~~~~~s~~~~---liv~~-~~~I~i~~~~ 251 (823)
... ...++++ ++.+.+||++....+.... +.|...++.+.|++.|- +..+- -+.+.+.|++
T Consensus 213 ~~~--~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 213 END--LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred cCc--ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 654 3445555 4569999998654332221 34556677778886442 22222 2455566654
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.67 E-value=0.091 Score=46.42 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=59.1
Q ss_pred CEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
+.|++||.|..|++|+.+ +++..+.-+ ..|++++-... ..++-+-++|| |-+|+-..
T Consensus 16 ~eLlvGs~D~~IRvf~~~-e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGT---------VGvY~~~~----------- 72 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD-EIVAEITET-DKVTSLCSLGG-GRFAYALANGT---------VGVYDRSQ----------- 72 (111)
T ss_pred ceEEEecCCcEEEEEeCC-cEEEEEecc-cceEEEEEcCC-CEEEEEecCCE---------EEEEeCcc-----------
Confidence 589999999999999854 555455544 46777776654 66888889998 88886531
Q ss_pred ceEEEEEeccCCCCCCceEEEEE-ecCCCCcceEEEEEeCCeEE
Q 037368 116 DCIGILRVFTSQFPEAKITSFLV-LEEAPPILLIAIGLDNGCIY 158 (823)
Q Consensus 116 ~~~~~~~~~~~~~p~~~v~~va~-~~d~~~~~~ia~G~~dG~V~ 158 (823)
|..++-++.. ++++++ +.++.-...+++|-.+|.|-
T Consensus 73 ---RlWRiKSK~~----~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---RLWRIKSKNQ----VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeeccCCC----eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1122212112 444433 44432122399999999875
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.65 E-value=0.012 Score=65.65 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=59.5
Q ss_pred ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecC
Q 037368 62 AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEE 141 (823)
Q Consensus 62 ~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d 141 (823)
.+.+.|.+++++|+.+.|+.|.+||+ |.+||..+.. ....+. .+. ++.++|||+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgS---------iiLyD~~~~~-----------t~~~ka---~~~---P~~iaWHp~ 310 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGS---------IILYDTTRGV-----------TLLAKA---EFI---PTLIAWHPD 310 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCe---------EEEEEcCCCe-----------eeeeee---ccc---ceEEEEcCC
Confidence 46789999999999999999999998 9999987421 111111 233 799999999
Q ss_pred CCCcceEEEEEeCCeEEEEEcc
Q 037368 142 APPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 142 ~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
|.. +++|+..|.+.+||.-
T Consensus 311 gai---~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 311 GAI---FVVGSEQGELQCFDMA 329 (545)
T ss_pred CcE---EEEEcCCceEEEEEee
Confidence 999 9999999999999853
No 336
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.65 E-value=0.042 Score=62.23 Aligned_cols=186 Identities=18% Similarity=0.218 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHH
Q 037368 332 DMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYN 411 (823)
Q Consensus 332 ~~~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~ 411 (823)
+.+.-++.+-+-+-|-.|+++|+-. . |.++-.+-..+|+||-..|+|+.|+.+|++...... .|.--+.+.+-+-
T Consensus 676 d~dkale~fkkgdaf~kaielarfa-f-p~evv~lee~wg~hl~~~~q~daainhfiea~~~~k---aieaai~akew~k 750 (1636)
T KOG3616|consen 676 DFDKALECFKKGDAFGKAIELARFA-F-PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK---AIEAAIGAKEWKK 750 (1636)
T ss_pred CHHHHHHHHHcccHHHHHHHHHHhh-C-cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH---HHHHHhhhhhhhh
Confidence 3334444443444556666666542 2 445667778899999999999999999998632221 2222222333232
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHH
Q 037368 412 LTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHEL 491 (823)
Q Consensus 412 L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~ 491 (823)
-+.-|..+.....+ +-+..++...|...++.+.-+++...-. -...||.+.-++|+.+.|..|+...--.+.
T Consensus 751 ai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~-------~~~dai~my~k~~kw~da~kla~e~~~~e~ 822 (1636)
T KOG3616|consen 751 AISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD-------LFKDAIDMYGKAGKWEDAFKLAEECHGPEA 822 (1636)
T ss_pred hHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc-------hhHHHHHHHhccccHHHHHHHHHHhcCchh
Confidence 33334444333322 2334556677877777665555554322 135788888899999999998887655566
Q ss_pred HHHHHHHhh-------------------cCHHHHHHHHhcCChH-HHHHHHHHHHHHHH
Q 037368 492 YLKILLEDL-------------------GRYDEALQYISSLDPS-QAGVTVKEYGKILI 530 (823)
Q Consensus 492 ~l~il~~~~-------------------~~~~~al~yl~~l~~~-~~~~~i~k~~~~Ll 530 (823)
.+..++... +.+++|+..+.+.+.. +..+++.+|...+|
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 555554321 3466777777765543 46667777655444
No 337
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.58 E-value=0.015 Score=59.51 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=79.3
Q ss_pred ceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE--e-------------cCCCCcceEEEeecC-CeEE
Q 037368 132 KITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ--V-------------DNQCSVMGLGFRVDG-QALQ 195 (823)
Q Consensus 132 ~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~--~-------------~~~~~It~l~fs~dg-~~~~ 195 (823)
.|++|-|+..|.+ +|+|-.+|.|.+|...- .+++-.+.+ + +-++.|..+.|-.++ ...+
T Consensus 28 ~ItaVefd~tg~Y---latGDkgGRVvlfer~~--s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 28 KITAVEFDETGLY---LATGDKGGRVVLFEREK--SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred eeeEEEeccccce---EeecCCCceEEEeeccc--ccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 4999999999999 99998889999996431 122111111 1 114678899886654 3367
Q ss_pred EEEEcCCeEEEEEecCC------------------CCc-----------------------ceEE-ccCCCccceecccC
Q 037368 196 LFAVTPNSVILFSLQNQ------------------PPK-----------------------RQFL-DNIGCSTNSVAMSD 233 (823)
Q Consensus 196 l~~~t~~~V~~~d~~~~------------------~~~-----------------------~~~l-~~~~~~~~~~~~s~ 233 (823)
|.++++.+|.+|.+..+ +.+ .++. ..|.+-++++++..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 88888899999998655 100 0011 12344456677777
Q ss_pred CCeEEEeeCC-eEEEEecCCCCccc
Q 037368 234 RLELIIGRPE-AVYFYEVDGRGPCW 257 (823)
Q Consensus 234 ~~~liv~~~~-~I~i~~~~g~~~~~ 257 (823)
|.++..+.++ .|.+|+++-...|+
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sF 207 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSF 207 (460)
T ss_pred chheeeeccceeeeeccccccCCce
Confidence 8887777776 78899876443343
No 338
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=0.022 Score=64.92 Aligned_cols=128 Identities=22% Similarity=0.177 Sum_probs=84.0
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCccccccee---EEEEeCCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVC---LKVFDLDKMEPEGTSS 112 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~---vkvWdl~~~~~~~~~~ 112 (823)
.+++||.+|+|.++| .++.+-+.|..|++.|.++.|... .-|+|.|...... -+..+ +.|-|+.++.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~-sslvSfsys~~n~--~sg~vrN~l~vtdLrtGl------ 509 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGN-SSLVSFSYSHVNS--ASGGVRNDLVVTDLRTGL------ 509 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccc-eeEEEeeeccccc--cccceeeeEEEEEccccc------
Confidence 568999999999999 777778899999999999999643 4577766543211 00111 5566776421
Q ss_pred CCCceEEEEEeccCCCCC-CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCC-cceEEEe
Q 037368 113 TSPDCIGILRVFTSQFPE-AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCS-VMGLGFR 188 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~-~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~-It~l~fs 188 (823)
.. .++.. +.|+ +.|..+..+.-+++ +|+.+.+--+-+|+... ...-....-.-| ||-+.|+
T Consensus 510 --sk---~fR~l--~~~despI~~irvS~~~~y---Lai~Fr~~plEiwd~kt-----~~~lr~mS~a~P~it~leWs 572 (1062)
T KOG1912|consen 510 --SK---RFRGL--QKPDESPIRAIRVSSSGRY---LAILFRREPLEIWDLKT-----LRMLRLMSLALPLITVLEWS 572 (1062)
T ss_pred --cc---ccccC--CCCCcCcceeeeecccCce---EEEEecccchHHHhhcc-----chHHHHHhhcCCcEEEEeec
Confidence 11 12211 1121 33999999999999 99999999999998621 110001122445 8888887
No 339
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.57 E-value=3.1 Score=51.03 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=95.7
Q ss_pred eecChHHHHHHHHHhccHHHHHHHHHhcC-CCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH------HHHH
Q 037368 329 GEKDMESKLDMLFKKNLYTVAINLVQSQQ-ADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS------YVIQ 401 (823)
Q Consensus 329 ~~~~~~~~i~~L~~~~~f~~Al~la~~~~-~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps------~vI~ 401 (823)
.+..+.|.++++...+++++|+++..... .++ .-...+...|..+...|++++|+..|-+.+.. +|. ..+.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 44556788888999999999999887742 111 12345677788999999999999999987543 331 2233
Q ss_pred HhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChh----hHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHH
Q 037368 402 KFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVE----KLNMFIKGEDGVGEHKFDVETAIRVCRAANYHE 477 (823)
Q Consensus 402 kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~----~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~ 477 (823)
-+++.++...-..+|.++......+.. -..|-.+|...++.+ .+++.++..+...+..+ ....++...|..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~---~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPT---EYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHCCChH
Confidence 445666777777777776654444444 444555677777643 34555554431111111 1233455677778
Q ss_pred HHHHHHHHhC
Q 037368 478 HAMYVAKKAG 487 (823)
Q Consensus 478 ~a~~la~~~~ 487 (823)
.|+...++..
T Consensus 168 ~Al~~l~~~~ 177 (765)
T PRK10049 168 PALGAIDDAN 177 (765)
T ss_pred HHHHHHHhCC
Confidence 7877666433
No 340
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.46 E-value=1.1 Score=50.32 Aligned_cols=232 Identities=13% Similarity=0.054 Sum_probs=133.8
Q ss_pred hccHHHHHHHHHhcCCCHHHHHHH-HHHHhhhhccCCCHHHHHHHHHHHhCCcChHHH------HHHhhchhhHHHHHHH
Q 037368 343 KNLYTVAINLVQSQQADAAATAEV-LRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYV------IQKFLDAQRIYNLTNY 415 (823)
Q Consensus 343 ~~~f~~Al~la~~~~~~~~~~~~I-~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~v------I~kFl~~~~~~~L~~Y 415 (823)
.|+|+.|.+.+....-..+ ...+ +..-+..-...|+++.|.+.|.+.........+ ....+..++.+.-..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4899999988876311100 0122 233466668999999999999887543221112 2244556677777778
Q ss_pred HHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHH
Q 037368 416 LEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGKHELYLKI 495 (823)
Q Consensus 416 L~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~i 495 (823)
++.+.+....+..-..++..+|.+.+|-+...+.+..-. .....+.+..-+ ++...+ ...+..
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~--k~~~~~~~~~~~-l~~~a~--------------~~l~~~ 238 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA--KAHVGDEEHRAM-LEQQAW--------------IGLMDQ 238 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HcCCCCHHHHHH-HHHHHH--------------HHHHHH
Confidence 888887776677777788889998887665554433211 000123222221 111000 001111
Q ss_pred HHHhhcCHHHHHHHHhcCChH--HHHHHHHHHHHHHHhc-CCHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHH---
Q 037368 496 LLEDLGRYDEALQYISSLDPS--QAGVTVKEYGKILIEH-KPMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPV--- 569 (823)
Q Consensus 496 l~~~~~~~~~al~yl~~l~~~--~~~~~i~k~~~~Ll~~-~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 569 (823)
...+ .+-+...++.+.++.. +.-.+...|+..++.. .++++.+++.+.... .+++.
T Consensus 239 ~~~~-~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----------------~~~~~l~~ 300 (398)
T PRK10747 239 AMAD-QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----------------QYDERLVL 300 (398)
T ss_pred HHHh-cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------------CCCHHHHH
Confidence 1122 3445555666666442 2344677788777655 567777777665431 23342
Q ss_pred HHHhhhccCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 570 DFLNIFVHHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 570 ~~~~~f~~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
.+..+..+++.....+++..++..++. +.++-++=.+++..
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~P~~---~~l~l~lgrl~~~~ 341 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQHGDT---PLLWSTLGQLLMKH 341 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHC
Confidence 222233457888999999999887753 57777888888775
No 341
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.45 E-value=0.6 Score=47.97 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=82.7
Q ss_pred EEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceE
Q 037368 69 FLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLI 148 (823)
Q Consensus 69 ~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~i 148 (823)
+++.+++|++||.. .|.. |-|=.... + .+ .+++...+.+.++| .=.-++||||+.. +
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~---------iEiRsa~D-d-----f~--si~~kcqVpkD~~P--QWRkl~WSpD~tl---L 58 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQC---------IEIRSAKD-D-----FS--SIIGKCQVPKDPNP--QWRKLAWSPDCTL---L 58 (282)
T ss_pred ceeecCCCcEEEEE-eccE---------EEEEeccC-C-----ch--heeEEEecCCCCCc--hheEEEECCCCcE---E
Confidence 46677888888766 3433 55543321 1 11 14444444433455 2567999999999 9
Q ss_pred EEEEeCCeEEEEEcc--cccccccceeEEecCCCCcceEEEeecCC----eEEEEEE-cCCeEEEEEecC---CC-Ccce
Q 037368 149 AIGLDNGCIYCIKGD--IARERITRFKLQVDNQCSVMGLGFRVDGQ----ALQLFAV-TPNSVILFSLQN---QP-PKRQ 217 (823)
Q Consensus 149 a~G~~dG~V~l~~~~--~~~~~~~k~~~~~~~~~~It~l~fs~dg~----~~~l~~~-t~~~V~~~d~~~---~~-~~~~ 217 (823)
|.....|+|.+|+.- ....-.+......+...+|-+|.|...-. +..|++. ..+.++.|-+.. ++ ....
T Consensus 59 a~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 59 AYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred EEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 999999999999742 00000000000112256788888854321 1345545 556677776532 11 1222
Q ss_pred EE--c-cCCCccceecccCCCeE-EEee
Q 037368 218 FL--D-NIGCSTNSVAMSDRLEL-IIGR 241 (823)
Q Consensus 218 ~l--~-~~~~~~~~~~~s~~~~l-iv~~ 241 (823)
.+ . .....++++++.|..++ +||+
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEec
Confidence 22 2 23456778888887664 4554
No 342
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.44 E-value=0.015 Score=61.74 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=65.8
Q ss_pred CEEEEEecCCeEE---EEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVS---LLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 36 ~~l~~gs~dG~i~---~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
..+.++...|-++ +|+ .++... -.-||-..|+.++++||+++++|+--|+. |||-.+..
T Consensus 120 ~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEk---------IRvs~ypa------- 182 (390)
T KOG3914|consen 120 TSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEK---------IRVSRYPA------- 182 (390)
T ss_pred ceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCce---------EEEEecCc-------
Confidence 4444444444443 444 224432 44579999999999999999999999997 98866542
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc
Q 037368 112 STSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG 162 (823)
Q Consensus 112 ~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~ 162 (823)
+..+.++-+....| |..+++-++. . +.+|++|++|++|+.
T Consensus 183 ---~f~IesfclGH~eF----VS~isl~~~~-~---LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 183 ---TFVIESFCLGHKEF----VSTISLTDNY-L---LLSGSGDKTLRLWDI 222 (390)
T ss_pred ---ccchhhhccccHhh----eeeeeeccCc-e---eeecCCCCcEEEEec
Confidence 11122221111112 8999998873 5 789999999999985
No 343
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=0.009 Score=62.02 Aligned_cols=106 Identities=22% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCEEEEEecCCeEEEEc-CC---Ce--eeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-RG---LK--FNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~~---~~--~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
++.++-|..+|.|..+| +. |+ +...+ -|..+|+++.... ++++|++.+.+|+ |++||+....
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gk---------ikLyD~R~~K- 332 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGK---------IKLYDLRATK- 332 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCc---------eeEeeehhhh-
Confidence 34667788999999999 43 22 22222 3888999998877 7899999999998 9999998432
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
...-+++...|-+.. .-.-+-+++.-.. |++|+.|--.++|..+
T Consensus 333 ------~~~~V~qYeGHvN~~---a~l~~~v~~eeg~---I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 333 ------CKKSVMQYEGHVNLS---AYLPAHVKEEEGS---IFSVGDDCYTRIWSLD 376 (425)
T ss_pred ------cccceeeeecccccc---cccccccccccce---EEEccCeeEEEEEecc
Confidence 000144544332111 1223445665556 7778888888899754
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.36 E-value=0.16 Score=44.95 Aligned_cols=85 Identities=24% Similarity=0.283 Sum_probs=57.0
Q ss_pred eeEEEEec---CC-CEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC
Q 037368 67 VLFLQQLK---QR-NFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA 142 (823)
Q Consensus 67 V~~i~~~~---~~-~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~ 142 (823)
|++|++.. +| +-|+.+|+|.. ||||+=+. ++..+... ++|++++-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~---------IRvf~~~e------------~~~Ei~e~------~~v~~L~~~~~- 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE---------IRVFKGDE------------IVAEITET------DKVTSLCSLGG- 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE---------EEEEeCCc------------EEEEEecc------cceEEEEEcCC-
Confidence 66777754 22 67999999997 99998652 45555422 23788777665
Q ss_pred CCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEee
Q 037368 143 PPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRV 189 (823)
Q Consensus 143 ~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~ 189 (823)
.. +|.|+.||+|-+|+... |.++ ..++..++++.+..
T Consensus 54 ~~---F~Y~l~NGTVGvY~~~~---RlWR----iKSK~~~~~~~~~D 90 (111)
T PF14783_consen 54 GR---FAYALANGTVGVYDRSQ---RLWR----IKSKNQVTSMAFYD 90 (111)
T ss_pred CE---EEEEecCCEEEEEeCcc---eeee----eccCCCeEEEEEEc
Confidence 57 99999999999998631 2222 12455577776643
No 345
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.36 E-value=0.0055 Score=63.51 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=63.6
Q ss_pred CCCeEEEe---eCCCEEEEEecCCeEEEEc-CCCe---eeEeEeecccc--eeEEEEecCCCEEEEEecCCCCcccccce
Q 037368 25 SGNITCCS---SGRGKVVIGCDDGAVSLLD-RGLK---FNFGFQAHSSS--VLFLQQLKQRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 25 ~~~is~~~---~~~~~l~~gs~dG~i~~~d-~~~~---~~~~~~~H~~~--V~~i~~~~~~~~l~s~s~D~~~~~~~~~~ 95 (823)
+..|+|+- +.+.+|.+.+.+|+|++|| +-.+ -+.++.||-.. -.-+.+.+....++++|+|--
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy-------- 369 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY-------- 369 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE--------
Confidence 44455554 3456888889999999999 4434 47889998633 233444567778999999974
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEec
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLE 140 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~ 140 (823)
.|||.++.. +++++++ ++...|+..+.++||+.
T Consensus 370 -tRiWsl~~g----------hLl~tip-f~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 370 -TRIWSLDSG----------HLLCTIP-FPYSASEVDIPSVAFDS 402 (425)
T ss_pred -EEEEecccC----------ceeeccC-CCCccccccccceehhc
Confidence 999999842 3566654 22222323466777754
No 346
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.08 Score=57.05 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=83.6
Q ss_pred ccccccCCCCC-CCCcCCCCeEEEeeCCC----EEEEEe-cCCeEEEEcC--CCeeeEeEee-cccceeEEEEecCCCEE
Q 037368 9 FFEEKYGGKST-IPEEVSGNITCCSSGRG----KVVIGC-DDGAVSLLDR--GLKFNFGFQA-HSSSVLFLQQLKQRNFL 79 (823)
Q Consensus 9 ff~~~~~~~~~-~~~~~~~~is~~~~~~~----~l~~gs-~dG~i~~~d~--~~~~~~~~~~-H~~~V~~i~~~~~~~~l 79 (823)
.||.+...-++ +.+...|...||..+.+ .|+++. .+|.+.++|. ++.....|+. |..+|.++...+.++.+
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 34444433332 23444455444444433 565554 7899999993 3434445655 99999999999999999
Q ss_pred EEEecCCCCcccccceeEEEEeCCC-CCC-CCCCCCCCceEEEEEeccCCCCC--CceEEEEEecCCCCcceEEEEEeCC
Q 037368 80 VTVGEDEQVSAQQSAVCLKVFDLDK-MEP-EGTSSTSPDCIGILRVFTSQFPE--AKITSFLVLEEAPPILLIAIGLDNG 155 (823)
Q Consensus 80 ~s~s~D~~~~~~~~~~~vkvWdl~~-~~~-~~~~~~~~~~~~~~~~~~~~~p~--~~v~~va~~~d~~~~~~ia~G~~dG 155 (823)
+|+-..|- |.-|.... .+. .+...-.+. ..+ .+. .+|- +..+++.|+|++.. ++.-..|-
T Consensus 160 vSiD~~gm---------VEyWs~e~~~qfPr~~l~~~~K-~eT-dLy--~f~K~Kt~pts~Efsp~g~q---istl~~Dr 223 (558)
T KOG0882|consen 160 VSIDISGM---------VEYWSAEGPFQFPRTNLNFELK-HET-DLY--GFPKAKTEPTSFEFSPDGAQ---ISTLNPDR 223 (558)
T ss_pred eeccccce---------eEeecCCCcccCcccccccccc-ccc-hhh--cccccccCccceEEccccCc---ccccCccc
Confidence 98877776 99999884 110 000000000 000 000 1111 23799999999999 88877889
Q ss_pred eEEEEE
Q 037368 156 CIYCIK 161 (823)
Q Consensus 156 ~V~l~~ 161 (823)
+|+++.
T Consensus 224 kVR~F~ 229 (558)
T KOG0882|consen 224 KVRGFV 229 (558)
T ss_pred EEEEEE
Confidence 999875
No 347
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.14 Score=58.64 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=103.9
Q ss_pred EEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec---C-CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 37 KVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK---Q-RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 37 ~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~---~-~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
.|++|+..|.|.+|| ..+..+--|..|..+|.+++|.+ + ..+|+....-.+ +.+|+.+++++
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~---------lvLwntdtG~k---- 147 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST---------LVLWNTDTGEK---- 147 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE---------EEEEEccCCce----
Confidence 578999999999999 66666656777889999999986 2 266777765555 99999885421
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEEec-CCCCcceEEEEEeCCeEEEEEccccccc---ccceeEEecCC--------
Q 037368 112 STSPDCIGILRVFTSQFPEAKITSFLVLE-EAPPILLIAIGLDNGCIYCIKGDIARER---ITRFKLQVDNQ-------- 179 (823)
Q Consensus 112 ~~~~~~~~~~~~~~~~~p~~~v~~va~~~-d~~~~~~ia~G~~dG~V~l~~~~~~~~~---~~k~~~~~~~~-------- 179 (823)
..++++......|+.++| |.+. +.+-+..|.|.+.+.--..+. +.+.++-.++.
T Consensus 148 -----------~Wk~~ys~~iLs~f~~DPfd~rh---~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere 213 (1062)
T KOG1912|consen 148 -----------FWKYDYSHEILSCFRVDPFDSRH---FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERE 213 (1062)
T ss_pred -----------eeccccCCcceeeeeeCCCCcce---EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhh
Confidence 111122111267788888 5555 555555677766542100110 11111111110
Q ss_pred ----CC----------cc---eEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceE-EccCCCccceecccCCC----eE
Q 037368 180 ----CS----------VM---GLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQF-LDNIGCSTNSVAMSDRL----EL 237 (823)
Q Consensus 180 ----~~----------It---~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~-l~~~~~~~~~~~~s~~~----~l 237 (823)
.. |+ .++|+|.-+ +++|++-..++.++|++-......+ ++..|.+ .+.+-|++ -|
T Consensus 214 ~at~ns~ts~~~sa~fity~a~faf~p~~r-n~lfi~~prellv~dle~~~~l~vvpier~~ak--fv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 214 TATGNSTTSTPASAYFITYCAQFAFSPHWR-NILFITFPRELLVFDLEYECCLAVVPIERGGAK--FVDVLPDPRRDALF 290 (1062)
T ss_pred hhccccccCCCcchhHHHHHHhhhcChhhh-ceEEEEeccceEEEcchhhceeEEEEeccCCcc--eeEeccCCCcceEE
Confidence 11 11 245555433 6899999999999998754322222 2322222 23333433 34
Q ss_pred EEeeCCeEEEEe
Q 037368 238 IIGRPEAVYFYE 249 (823)
Q Consensus 238 iv~~~~~I~i~~ 249 (823)
..-.++.+.+|.
T Consensus 291 clH~nG~ltirv 302 (1062)
T KOG1912|consen 291 CLHSNGRLTIRV 302 (1062)
T ss_pred EEecCCeEEEEE
Confidence 445566777764
No 348
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.02 E-value=0.024 Score=57.79 Aligned_cols=96 Identities=26% Similarity=0.318 Sum_probs=65.8
Q ss_pred CCEEEEEecCCeEEEEc-C-CCeeeEe-EeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 35 RGKVVIGCDDGAVSLLD-R-GLKFNFG-FQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 35 ~~~l~~gs~dG~i~~~d-~-~~~~~~~-~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
++.+++|+.||.+.-|| + -++.+.+ -+-|+..|.+|..+| .+.+++|+|.|.. |++||.+...
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~---------i~~~DtRnm~---- 244 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC---------IRVLDTRNMG---- 244 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc---------eeeeehhccc----
Confidence 46789999999999999 5 2333322 346999999999886 5679999999998 9999998532
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG 155 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG 155 (823)
.| +..-.+ ++.|+.+..+|--.. +-+|+...+|
T Consensus 245 ---kP--l~~~~v------~GGVWRi~~~p~~~~-~lL~~CMh~G 277 (339)
T KOG0280|consen 245 ---KP--LFKAKV------GGGVWRIKHHPEIFH-RLLAACMHNG 277 (339)
T ss_pred ---Cc--cccCcc------ccceEEEEecchhhh-HHHHHHHhcC
Confidence 23 111111 134999999986431 1145555555
No 349
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.85 E-value=3.4 Score=49.61 Aligned_cols=257 Identities=10% Similarity=0.056 Sum_probs=139.2
Q ss_pred ecChHHHHHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH---HH---HHH
Q 037368 330 EKDMESKLDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS---YV---IQK 402 (823)
Q Consensus 330 ~~~~~~~i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps---~v---I~k 402 (823)
+-++.+.+.-++.+|.++.|+.+++.. ...+.. .......|--++..|++++|...|-+.+. .+|. .. ..-
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~-~~P~~~~a~~~la~~ 119 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLA-VNVCQPEDVLLVASV 119 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHH
Confidence 345677788888999999999998752 111111 22333444555679999999999988754 2332 11 122
Q ss_pred hhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhh----HHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHH
Q 037368 403 FLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEK----LNMFIKGEDGVGEHKFDVETAIRVCRAANYHEH 478 (823)
Q Consensus 403 Fl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~----l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~ 478 (823)
+...++...=+.++.........+..-...+.++|..+++.+. +.+.+...+. .-+.-...-.+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~----~~~a~~~~~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP----RGDMIATCLSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHcCCHHH
Confidence 3344454444444444333233334444556778888887543 4445444331 1111111123567788899
Q ss_pred HHHHHHHh-C----ChHH----HHHHHHHhhcCHHHHHHHHhcC---ChHHHHHHHHHHHHHHHhcC-CH----HHHHHH
Q 037368 479 AMYVAKKA-G----KHEL----YLKILLEDLGRYDEALQYISSL---DPSQAGVTVKEYGKILIEHK-PM----ETIDIL 541 (823)
Q Consensus 479 a~~la~~~-~----~~~~----~l~il~~~~~~~~~al~yl~~l---~~~~~~~~i~k~~~~Ll~~~-p~----~~~~ll 541 (823)
|+..++.. . .... ....+.. .+++++|+..+.+. .+. ........|..+.... .+ +++..+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCA-VGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 88887651 1 1111 1234444 49999999888762 222 2344555665555433 23 256666
Q ss_pred HHHhhcCCCCcccCCCCCcccCCCCCHH---HHHhhhc--cCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 542 LRLCTEDGESTKRGASSSTYMSMLPSPV---DFLNIFV--HHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~--~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
.+...-. +-++. .+-.++. +..+..+.+++..+...++. ...+..+-..|...
T Consensus 274 ~~Al~l~----------------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~---~~a~~~La~~l~~~ 331 (656)
T PRK15174 274 RHALQFN----------------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL---PYVRAMYARALRQV 331 (656)
T ss_pred HHHHhhC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC
Confidence 5543211 11121 1122222 35677888888888776543 45566666666553
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.18 Score=55.74 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=90.3
Q ss_pred EEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCC--------EEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 39 VIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRN--------FLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 39 ~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~--------~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
-.|.....++-+| ..|+++..|+-|.. |+-+.+.|+++ .|+-.|+.+ |.=||..-..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~----------vfriDpRv~~--- 415 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS----------VFRIDPRVQG--- 415 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc----------eEEecccccC---
Confidence 4555666788888 77999999998886 66666666443 233333332 7778876321
Q ss_pred CCCCCCceEEEEEeccCCCC-CCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec-CCCCcceEEE
Q 037368 110 TSSTSPDCIGILRVFTSQFP-EAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-NQCSVMGLGF 187 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p-~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-~~~~It~l~f 187 (823)
.- .+.... .+++. .....|++-..+| + ||+|+.+|.|+||+. + +-+.++.+. ...||+.|.-
T Consensus 416 ----~~-kl~~~q--~kqy~~k~nFsc~aTT~sG-~---IvvgS~~GdIRLYdr-i----~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 416 ----KN-KLAVVQ--SKQYSTKNNFSCFATTESG-Y---IVVGSLKGDIRLYDR-I----GRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred ----cc-eeeeee--ccccccccccceeeecCCc-e---EEEeecCCcEEeehh-h----hhhhhhcccccCCceeeEEe
Confidence 10 111111 11221 1237888888876 6 899999999999975 1 112233333 3789999999
Q ss_pred eecCCeEEEEEEcCCeEEEEEec
Q 037368 188 RVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 188 s~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
+.+|+ .+.++|++-+.+.++.
T Consensus 480 tadGK--wil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 480 TADGK--WILATCKTYLLLIDTL 500 (644)
T ss_pred eccCc--EEEEecccEEEEEEEe
Confidence 99994 6777888887777764
No 351
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=0.0059 Score=70.23 Aligned_cols=162 Identities=12% Similarity=0.090 Sum_probs=95.1
Q ss_pred CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCce
Q 037368 54 LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKI 133 (823)
Q Consensus 54 ~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v 133 (823)
++..++|+-|+..-+|++|+.+.++|+.|+-.|. ||+++..++.. .....-| +.+ |
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge---------ik~~nv~sG~~----------e~s~ncH--~Sa---v 1146 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE---------IKIFNVSSGSM----------EESVNCH--QSA---V 1146 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccce---------EEEEEccCccc----------ccccccc--ccc---c
Confidence 4556688889999999999999999999999997 99999986421 1111111 223 6
Q ss_pred EEEEEecCCCCcceEEEEEeCC--eEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecC
Q 037368 134 TSFLVLEEAPPILLIAIGLDNG--CIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 134 ~~va~~~d~~~~~~ia~G~~dG--~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
+-+.=+.||+. +.+.+.-. -..||+.. +.+.+...+. .-..+.|+..-+ .-+..+..+...+||+.+
T Consensus 1147 T~vePs~dgs~---~Ltsss~S~PlsaLW~~~---s~~~~~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1147 TLVEPSVDGST---QLTSSSSSSPLSALWDAS---STGGPRHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQT 1215 (1516)
T ss_pred ccccccCCcce---eeeeccccCchHHHhccc---cccCcccccc----ccceeehhhhHH-HHHhcccccceEEEeccc
Confidence 66666667765 43333222 34567642 1111111111 133566765431 123334456688999987
Q ss_pred CCCcceEEcc---CCCccceecccCCCeEEEeeCCeEEEEecCCC
Q 037368 212 QPPKRQFLDN---IGCSTNSVAMSDRLELIIGRPEAVYFYEVDGR 253 (823)
Q Consensus 212 ~~~~~~~l~~---~~~~~~~~~~s~~~~liv~~~~~I~i~~~~g~ 253 (823)
...+.+.|.+ ....-+|.+|||+..++. +++ .+||++..
T Consensus 1216 ~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1216 CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-NDG--VLWDVRIP 1257 (1516)
T ss_pred CcHHHHhcCcchhhhhhccccccCCCcceEe-eCc--eeeeeccH
Confidence 5433332421 223347899999888765 222 57888643
No 352
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=95.79 E-value=0.037 Score=49.23 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHhcCC
Q 037368 664 EKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQAHD 723 (823)
Q Consensus 664 ~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~~~d 723 (823)
..+.+||+. .++.|++.+-.....++++.+.+.+|..-|+|++||++..+..+
T Consensus 15 ~~l~~llr~-------~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 15 SLLGPLLRL-------PNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHcc-------CCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 789999998 68899999999999999999999999999999999999988543
No 353
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.77 E-value=9.6 Score=49.19 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC
Q 037368 338 DMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG 392 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~ 392 (823)
..++..++|+.|+...+.. ...+. -..++...|..++.+|+|++|+..|-+.+.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~ 331 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALA 331 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556778888888877652 12111 235666778888889999999988877653
No 354
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.76 E-value=2.2 Score=47.40 Aligned_cols=249 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred HHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC--hHH-------HHHHhhchhhH
Q 037368 340 LFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE--PSY-------VIQKFLDAQRI 409 (823)
Q Consensus 340 L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e--ps~-------vI~kFl~~~~~ 409 (823)
+...++++.|+...+.. ..++. ...++...|..++..|+|++|+..+-+.+..-+ +.. ...-+...++.
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34568888888877763 22232 234566678888899999999988877654321 111 12233333444
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChh----hHHHhhcCCCCCCcccCCH--H----HHHHHHHhcCCHHHH
Q 037368 410 YNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVE----KLNMFIKGEDGVGEHKFDV--E----TAIRVCRAANYHEHA 479 (823)
Q Consensus 410 ~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~----~l~~fi~~~~~~~~~~~d~--~----~ai~vl~~~g~~~~a 479 (823)
..=..++....+....+..-...|..+|.+.++.+ .+.+.++..+ . .... . ....++.+.|.+++|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---D-SLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---C-cchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 44344444443322222222334556777766643 3444444332 1 1111 1 112234566788887
Q ss_pred HHHHHHh----CChHHH---H-HHHHHhhcCHHHHHHHHhcCC---hHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhc
Q 037368 480 MYVAKKA----GKHELY---L-KILLEDLGRYDEALQYISSLD---PSQAGVTVKEYGKILI-EHKPMETIDILLRLCTE 547 (823)
Q Consensus 480 ~~la~~~----~~~~~~---l-~il~~~~~~~~~al~yl~~l~---~~~~~~~i~k~~~~Ll-~~~p~~~~~ll~~~~~~ 547 (823)
+.++.+. ..+... + .++. ..+++++|++++.+.- +......+..-+..+. ...++++++.+.+....
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776641 222211 2 3333 3489999999888732 2222222222222222 34677777776664322
Q ss_pred CCCCcccCCCCCcccCCCCCHHHHHhhhc--cCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhcc
Q 037368 548 DGESTKRGASSSTYMSMLPSPVDFLNIFV--HHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLS 612 (823)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~ 612 (823)
. | .......+..++. +.++.....++..++..++ . .-++.++..++.
T Consensus 279 ~--p------------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~---~-~~~~~l~~~~~~ 327 (389)
T PRK11788 279 Y--P------------GADLLLALAQLLEEQEGPEAAQALLREQLRRHPS---L-RGFHRLLDYHLA 327 (389)
T ss_pred C--C------------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcC---H-HHHHHHHHHhhh
Confidence 1 1 0111122233332 3567788888888877543 2 344556666554
No 355
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.73 E-value=0.17 Score=56.75 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=92.4
Q ss_pred CeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEec
Q 037368 45 GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVF 124 (823)
Q Consensus 45 G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~ 124 (823)
+.+.+-|.+|.-.+.+..-...+..=.|+|+++.++-.+-... .+|. +.++++.... .+. +-+..
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~-~~~~----i~~~~l~~g~-------~~~-i~~~~-- 237 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELG-GCPR----IYYLDLNTGK-------RPV-ILNFN-- 237 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecC-CCce----EEEEeccCCc-------cce-eeccC--
Confidence 3344444444333333333345666777888887776655543 2233 8888988532 221 11111
Q ss_pred cCCCCCCceEEEEEecCCCCcceEEEE-EeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCe
Q 037368 125 TSQFPEAKITSFLVLEEAPPILLIAIG-LDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNS 203 (823)
Q Consensus 125 ~~~~p~~~v~~va~~~d~~~~~~ia~G-~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~ 203 (823)
+.-..-+|+|||+. +|.. ..||...+|-.++.. +...+ +.+..+.-++=.|+|||+ .++|++..++
T Consensus 238 ------g~~~~P~fspDG~~---l~f~~~rdg~~~iy~~dl~~--~~~~~-Lt~~~gi~~~Ps~spdG~-~ivf~Sdr~G 304 (425)
T COG0823 238 ------GNNGAPAFSPDGSK---LAFSSSRDGSPDIYLMDLDG--KNLPR-LTNGFGINTSPSWSPDGS-KIVFTSDRGG 304 (425)
T ss_pred ------CccCCccCCCCCCE---EEEEECCCCCccEEEEcCCC--Cccee-cccCCccccCccCCCCCC-EEEEEeCCCC
Confidence 11334489999987 5544 447877777555421 11222 344444445667999996 6777766543
Q ss_pred ---EEEEEecCCCCcceEEccCCCccceecccCCCeEEEe
Q 037368 204 ---VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG 240 (823)
Q Consensus 204 ---V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~ 240 (823)
|++++.+++.. +.+...+..-.+-.|||||..++.
T Consensus 305 ~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 305 RPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred CcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEE
Confidence 88888887542 333222222226688999986653
No 356
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.69 E-value=2.2 Score=54.96 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=129.6
Q ss_pred HHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH--HH----HHHhhchhhHH
Q 037368 338 DMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS--YV----IQKFLDAQRIY 410 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps--~v----I~kFl~~~~~~ 410 (823)
+.+++++++++|++..+.. ..++. -...+...|+-++.+|+|++|.+.|-+.+. .+|. .+ ...| ..+..+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~-~~p~~~~a~~~L~~l~-~~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALR-MDPGNTNAVRGLANLY-RQQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH-HhcCHH
Confidence 4456789999999988762 22221 123455668999999999999999988763 2332 11 1112 122333
Q ss_pred HHHHHHHHHHHcCCC---------ChhHHHHHHHHHHhcCChh----hHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHH
Q 037368 411 NLTNYLEKLHEKGFA---------SKDHTTLLLNCYTKLKDVE----KLNMFIKGEDGVGEHKFDVETAIRVCRAANYHE 477 (823)
Q Consensus 411 ~L~~YL~~l~~~~~~---------~~~~~~lLl~~y~kl~~~~----~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~ 477 (823)
.-..|+..+...... ..+....+-..|...++.+ .+++-++..+......+ ..-.++.+.|.++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~---~LA~~~~~~G~~~ 512 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTY---RLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHH
Confidence 334555443211000 0001112334455555532 34555554431111111 2233566788888
Q ss_pred HHHHHHHH----hCChHHH---HHHHHHhhcCHHHHHHHHhcCChHH----HH--------HHHHHHHHHHH-hcCCHHH
Q 037368 478 HAMYVAKK----AGKHELY---LKILLEDLGRYDEALQYISSLDPSQ----AG--------VTVKEYGKILI-EHKPMET 537 (823)
Q Consensus 478 ~a~~la~~----~~~~~~~---l~il~~~~~~~~~al~yl~~l~~~~----~~--------~~i~k~~~~Ll-~~~p~~~ 537 (823)
+|....++ ...+... +.+++...+++++|++++.++...+ .. +.+...+..+. .-..+++
T Consensus 513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 88877664 2333222 3445555689999999998875321 10 11122232233 3345666
Q ss_pred HHHHHHHhhcCCCCcccCCCCCcccCCCCCH-HHHHhhhc--cCcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 538 IDILLRLCTEDGESTKRGASSSTYMSMLPSP-VDFLNIFV--HHPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 538 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~--~~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
.+++... | ..+.. ..+-.++. +..+..+.+++.++...++. ...+..+..+|...
T Consensus 593 ~~~l~~~------p------------~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~---~~a~~~la~~~~~~ 650 (1157)
T PRK11447 593 EALLRQQ------P------------PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN---ADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHhC------C------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC
Confidence 6665421 1 01111 12222232 36777888888888876643 45666777777664
No 357
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.69 E-value=2 Score=42.79 Aligned_cols=168 Identities=13% Similarity=0.195 Sum_probs=95.8
Q ss_pred CeEEEeeCCCEEEEEecCCeEEEEc-C--CCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEE---E
Q 037368 27 NITCCSSGRGKVVIGCDDGAVSLLD-R--GLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKV---F 100 (823)
Q Consensus 27 ~is~~~~~~~~l~~gs~dG~i~~~d-~--~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkv---W 100 (823)
+...++++++.|++++..+.|.+|+ . ..++..+|..- +.|.+|..++.|++|+|.=++....++. .+|+ |
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~---fvR~Y~NW 95 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVD---FVRAYFNW 95 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccce---EEEEEEEh
Confidence 3444455668887778888999999 3 34556666655 7999999999999999997766432111 2666 5
Q ss_pred eCCCCCC-------CC-CCC---CCC--ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccc
Q 037368 101 DLDKMEP-------EG-TSS---TSP--DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARE 167 (823)
Q Consensus 101 dl~~~~~-------~~-~~~---~~~--~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~ 167 (823)
...+.+. .| ..+ ..+ ..+..+.+-- . ..+.++|..|-... +++|+ ++++.||......-
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~---~~p~ciaCC~~tG~---LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-S---EPPLCIACCPVTGN---LLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEEEecC-C---CCCCEEEecCCCCC---EEEEc-CCEEEEEEEEEEEE
Confidence 4442211 01 000 000 0122222211 1 23899999997666 99998 77999997431000
Q ss_pred cccceeEE-ec-------CCCCcceEEEeecCCeEEEEEEcCCeEEEEEec
Q 037368 168 RITRFKLQ-VD-------NQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 168 ~~~k~~~~-~~-------~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
...+...+ ++ .+-..+.++|.. ..+++.++..+.++.+.
T Consensus 168 ~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~----~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 168 QSEKFSFLDFERSLIDHIDNFKPTQVAICE----GYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ecccccEEechhhhhheecCceEEEEEEEe----eEEEEecCCEEEEEEEe
Confidence 01111111 11 122344555543 36777888888877653
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.3 Score=58.36 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEee-cCCeEEEEEEcCCe
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRV-DGQALQLFAVTPNS 203 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~-dg~~~~l~~~t~~~ 203 (823)
|+++||+.||+. ++.|..+|.|.+|+.. +++-.+.+.++..|++++-+.. +++...++++..+|
T Consensus 133 Vtsvafn~dg~~---l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 133 VTSVAFNQDGSL---LLAGLGDGHVTVWDMH----RAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred ceeeEecCCCce---eccccCCCcEEEEEcc----CCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCC
Confidence 999999999999 9999999999999864 3344555666677788775532 22213444444444
No 359
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.48 E-value=0.25 Score=59.75 Aligned_cols=55 Identities=31% Similarity=0.422 Sum_probs=39.4
Q ss_pred HHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC
Q 037368 337 LDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE 395 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e 395 (823)
.++.-+++.|..|+.+-+ .+.+....|+-.||+||-+++.|++|+-.|..+ |.++
T Consensus 915 ~n~I~kh~Ly~~aL~ly~---~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~-Gkle 969 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYK---PDSEKQKVIYEAYADHLREELMSDEAALMYERC-GKLE 969 (1265)
T ss_pred HHHHHhcccchhhhheec---cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh-ccHH
Confidence 333334444444444432 246778999999999999999999999999886 5554
No 360
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.34 E-value=0.1 Score=59.34 Aligned_cols=190 Identities=13% Similarity=0.137 Sum_probs=115.5
Q ss_pred EEEeeCCCEEEEEecCCeEEEEc--CCCeeeEeEeecc--cceeEEEEecCC---CEEEEEecCCCCcccccceeEEEEe
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLD--RGLKFNFGFQAHS--SSVLFLQQLKQR---NFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d--~~~~~~~~~~~H~--~~V~~i~~~~~~---~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
.++...+.-+|+++.-|. .+.| .-+++-+ +-.|. ..|-...++|.. .++++.|.-. -.||+
T Consensus 30 ~si~p~grdi~lAsr~gl-~i~dld~p~~ppr-~l~h~tpw~vad~qws~h~a~~~wiVsts~qk----------aiiwn 97 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGL-YIIDLDDPFTPPR-WLHHITPWQVADVQWSPHPAKPYWIVSTSNQK----------AIIWN 97 (1081)
T ss_pred eeeccccchhhhhhhcCe-EEEeccCCCCCce-eeeccCcchhcceecccCCCCceeEEecCcch----------hhhhh
Confidence 333344556888888774 3444 3355442 33343 457777777632 4567666554 45899
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCC-CCcceEEEEEeCCeEEEEEcccccccccceeEE-ec-C
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIARERITRFKLQ-VD-N 178 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~-~~-~ 178 (823)
+.... . ..+ .+.+++++.. |+.+.|+|.- .. +|+.+.|-.|+.|+. +.+...+. .. -
T Consensus 98 lA~ss------~--~aI-ef~lhghsra---itd~n~~~q~pdV---latcsvdt~vh~wd~-----rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 98 LAKSS------S--NAI-EFVLHGHSRA---ITDINFNPQHPDV---LATCSVDTYVHAWDM-----RSPHRPFYSTSSW 157 (1081)
T ss_pred hhcCC------c--cce-EEEEecCccc---eeccccCCCCCcc---eeeccccccceeeec-----cCCCcceeeeecc
Confidence 98531 1 123 2344554544 8999998754 36 889999999999985 22222221 11 1
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCCccceecccC--CCeEEE-eeCCeEEEEecC
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSD--RLELII-GRPEAVYFYEVD 251 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~--~~~liv-~~~~~I~i~~~~ 251 (823)
...-+.++|+-... .+++....+.|.+||++..+.+...+.+|-..++.+.|.. -+.++. +.+++|++|+-+
T Consensus 158 ~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 158 RSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cccCceeeecccCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 34566788875432 4555555566999999876667777776666666666653 344444 445689999865
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.30 E-value=3.6 Score=45.85 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=88.6
Q ss_pred ceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE---Eec------CCCCcceEEEee-----cCC-eEEE
Q 037368 132 KITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL---QVD------NQCSVMGLGFRV-----DGQ-ALQL 196 (823)
Q Consensus 132 ~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~---~~~------~~~~It~l~fs~-----dg~-~~~l 196 (823)
.|++++.|.= .. +|+|+.+|.+.+.|. |++..-. +.+ ....|+++.|+- |+. +..|
T Consensus 88 ~vtal~~S~i-GF---vaigy~~G~l~viD~-----RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 88 PVTALKNSDI-GF---VAIGYESGSLVVIDL-----RGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp SEEEEEE-BT-SE---EEEEETTSEEEEEET-----TTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred cEeEEecCCC-cE---EEEEecCCcEEEEEC-----CCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 4999999843 35 999999999999985 4433111 111 245799999973 232 2466
Q ss_pred EEEcC-CeEEEEEecC--CCCcce----EEccCCCcccee-cc------------------cC----CCeEEEeeCCeEE
Q 037368 197 FAVTP-NSVILFSLQN--QPPKRQ----FLDNIGCSTNSV-AM------------------SD----RLELIIGRPEAVY 246 (823)
Q Consensus 197 ~~~t~-~~V~~~d~~~--~~~~~~----~l~~~~~~~~~~-~~------------------s~----~~~liv~~~~~I~ 246 (823)
+++|+ +.+..|.+-. .+.... ....+..++..+ .+ ++ .|.+++++...++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 77665 4588887642 111110 111111111110 11 01 3456667778899
Q ss_pred EEecC-CCCccccccCCe--E--EEE-----eeCcEEEEEEecCCCCccEEEEEeCCC-CEEEEecc--ccc----eeEE
Q 037368 247 FYEVD-GRGPCWAFEGEK--K--LLG-----WFRGYLLCVIADQRNSKNIFNVYDLKN-RLIAHSLV--VKE----VSHM 309 (823)
Q Consensus 247 i~~~~-g~~~~~~~~g~~--~--~i~-----~~~~ylv~~s~d~~~~~~~I~I~D~~~-~~i~~~~~--i~~----v~~v 309 (823)
++..- ++.....++.+. . .+. ..+..|+++. .++.|+++.+-. +.+.-..- ..+ ....
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-----CCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 98754 222223343321 1 121 1234555555 458999998743 44432211 111 1223
Q ss_pred EeecCcEEEEEcCCeEEEEee
Q 037368 310 LCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 310 ~~~~~~~~vvs~~~~v~~l~~ 330 (823)
+...|++++.+++..+.++.-
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEE
Confidence 577888888887777666643
No 362
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.27 E-value=0.043 Score=48.98 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHhCC-CCChHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 037368 771 IERDD-ILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEGDR 816 (823)
Q Consensus 771 i~~~~-~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l~~~~~~i~~~~ 816 (823)
+++++ .|+|..||++|| +.++++.+++||.+.|++...++++.+
T Consensus 4 L~~~~~~ld~~~vL~~LP--~~~~l~~l~~fl~~~l~~~~~~~~~~~ 48 (109)
T PF10367_consen 4 LNEHGSRLDPIDVLKLLP--DDWPLSDLSDFLCKSLRKYSNRKRESQ 48 (109)
T ss_pred HHhccccCCHHHHHHhCc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 799999999998 899999999999999988877666554
No 363
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.25 E-value=0.27 Score=47.23 Aligned_cols=100 Identities=20% Similarity=0.259 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHcCCCC-hhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHH----
Q 037368 409 IYNLTNYLEKLHEKGFAS-KDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVA---- 483 (823)
Q Consensus 409 ~~~L~~YL~~l~~~~~~~-~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la---- 483 (823)
+..|+.|+..+...+... ..-..+|+.++.+.|....|..||.-.- +.=+.+.|..++.-.+.+..+.+++
T Consensus 10 i~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V----i~DSk~lA~~LLs~~~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 10 IAVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV----IPDSKPLACQLLSLGNQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc----cCCcHHHHHHHHHhHccChHHHHHHHHHH
Confidence 346899999988777643 3446678899999999999999998653 3345778888777666555555544
Q ss_pred HHhC-ChHHHHHHHHHhhcCHHHHHHHHhcC
Q 037368 484 KKAG-KHELYLKILLEDLGRYDEALQYISSL 513 (823)
Q Consensus 484 ~~~~-~~~~~l~il~~~~~~~~~al~yl~~l 513 (823)
++.+ .|+.++++|+.+ |++-+|+.|+++.
T Consensus 86 kRL~~~~~~iievLL~~-g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSK-GQVLEALRYARQY 115 (167)
T ss_pred HHhhhhHHHHHHHHHhC-CCHHHHHHHHHHc
Confidence 4567 888999999988 9999999999874
No 364
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.25 E-value=3.8 Score=46.83 Aligned_cols=55 Identities=20% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHhccHHHHHHHHHhc--------CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q 037368 336 KLDMLFKKNLYTVAINLVQSQ--------QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILT 390 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~--------~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~t 390 (823)
....+..+++|+.|..+++.. ++.--.+......+|..+...++|++|+..|-++
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456777899999999998762 2111123333446899999999999999999876
No 365
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.13 E-value=0.069 Score=60.76 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=78.5
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--CCCCcceEEEeecCCeEEEEEEcCCe-EEEEEe
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD--NQCSVMGLGFRVDGQALQLFAVTPNS-VILFSL 209 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~--~~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~ 209 (823)
.+|++ ..+.+ +|.|+..|.|++|... +...+.+.+ ..+.++.+..+++. +.+++++.++ |.++.+
T Consensus 38 lTc~d--st~~~---l~~GsS~G~lyl~~R~-----~~~~~~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 38 LTCVD--ATEEY---LAMGSSAGSVYLYNRH-----TGEMRKLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQL 105 (726)
T ss_pred EEEee--cCCce---EEEecccceEEEEecC-----chhhhcccccCccceEEEEEecchh--HhhhhhcCCceEEeehh
Confidence 44444 44558 9999999999999632 122222222 24556667777776 5777777766 666666
Q ss_pred cCCCCcceEE----c-cCCCccceecccCCCeEEEeeC--CeEEEEecCCCC-------ccccccCCeEEEEeeCcEEEE
Q 037368 210 QNQPPKRQFL----D-NIGCSTNSVAMSDRLELIIGRP--EAVYFYEVDGRG-------PCWAFEGEKKLLGWFRGYLLC 275 (823)
Q Consensus 210 ~~~~~~~~~l----~-~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~g~~-------~~~~~~g~~~~i~~~~~ylv~ 275 (823)
.....+.... + .|++.|+|++|++++.-+-++| +.|.+-..+.+. ..+.++++...+.....||++
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV 185 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV 185 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence 5433222222 2 4688999999999997554444 455554444321 112345555566666666655
Q ss_pred E
Q 037368 276 V 276 (823)
Q Consensus 276 ~ 276 (823)
.
T Consensus 186 S 186 (726)
T KOG3621|consen 186 S 186 (726)
T ss_pred h
Confidence 4
No 366
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=1 Score=50.06 Aligned_cols=100 Identities=6% Similarity=0.027 Sum_probs=59.1
Q ss_pred eEEEEEecCCCCcceEEEEEe---CCeEEEEEcccccccccceeEEecC-CCCcceEEEeecCCeEEEEEEc----CCeE
Q 037368 133 ITSFLVLEEAPPILLIAIGLD---NGCIYCIKGDIARERITRFKLQVDN-QCSVMGLGFRVDGQALQLFAVT----PNSV 204 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~---dG~V~l~~~~~~~~~~~k~~~~~~~-~~~It~l~fs~dg~~~~l~~~t----~~~V 204 (823)
|-.+||.|.|+. +|+-++ ..+|.+|...- ...+...+..- .-.-+.|.|+|.|+ .+++++ .+.+
T Consensus 448 vi~FaWEP~gdk---F~vi~g~~~k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~--fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 448 VIAFAWEPHGDK---FAVISGNTVKNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGR--FVVVAALVSRRGDL 519 (698)
T ss_pred eeeeeeccCCCe---EEEEEccccccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCc--EEEEEEecccccce
Confidence 899999999997 555443 24677776431 22333333321 34567899999994 444443 3458
Q ss_pred EEEEecCCCCcceEEccCCCccceecccCCCeEEEee
Q 037368 205 ILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGR 241 (823)
Q Consensus 205 ~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~ 241 (823)
..||++-.. ...+-.......+-+.|.|.|++++++
T Consensus 520 ~F~D~~~a~-~k~~~~~eh~~at~veWDPtGRYvvT~ 555 (698)
T KOG2314|consen 520 EFYDTDYAD-LKDTASPEHFAATEVEWDPTGRYVVTS 555 (698)
T ss_pred EEEecchhh-hhhccCccccccccceECCCCCEEEEe
Confidence 899986311 111111111234557899999988765
No 367
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.086 Score=59.31 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=64.8
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceE-EEEEecCCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKIT-SFLVLEEAP 143 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~-~va~~~d~~ 143 (823)
..|..+.+.|.-+++|++.++|. |-+..+.-. -+-++. .|+..++ +++|.|||+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~ge---------lli~R~n~q-----------Rlwtip-----~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGE---------LLIHRLNWQ-----------RLWTIP-----IPGENVTASLCWRPDGK 75 (665)
T ss_pred cceEEEEEcCccchhheeccCCc---------EEEEEeccc-----------eeEecc-----CCCCccceeeeecCCCC
Confidence 46888999999999999999996 666665411 122222 2333366 999999999
Q ss_pred CcceEEEEEeCCeEEEEEcccccccccceeE-EecCCCCcceEEEee
Q 037368 144 PILLIAIGLDNGCIYCIKGDIARERITRFKL-QVDNQCSVMGLGFRV 189 (823)
Q Consensus 144 ~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-~~~~~~~It~l~fs~ 189 (823)
. +|+|+.||+|++.|.. ++....- ....+.+|+.+.|.+
T Consensus 76 l---laVg~kdG~I~L~Dve----~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 L---LAVGFKDGTIRLHDVE----KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred E---EEEEecCCeEEEEEcc----CCCceeccccccccchheeeccc
Confidence 9 9999999999999863 2222111 122367788888864
No 368
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.69 E-value=3.7 Score=46.14 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=40.6
Q ss_pred CCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCCCcceEEc-cCCCccceecccCCCeEEEeeCCeEEEEecCCC
Q 037368 178 NQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQPPKRQFLD-NIGCSTNSVAMSDRLELIIGRPEAVYFYEVDGR 253 (823)
Q Consensus 178 ~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~~~~~~l~-~~~~~~~~~~~s~~~~liv~~~~~I~i~~~~g~ 253 (823)
..++|+.|+.||+|+ .++.-++ +.+.+.+.+-+. ....++ +....+..+.|..++.+++.+.+.+.++...|.
T Consensus 215 ~~~~i~~iavSpng~--~iAl~t~~g~l~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~ 289 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGK--FIALFTDSGNLWVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPDGD 289 (410)
T ss_pred CCCCeEEEEECCCCC--EEEEEECCCCEEEEECcccc-eeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCCCC
Confidence 457999999999995 4444444 456666543221 122222 112334455555555666666666666665543
No 369
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=2.7 Score=49.78 Aligned_cols=227 Identities=19% Similarity=0.223 Sum_probs=133.7
Q ss_pred HHHHHHhhcCHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHHH
Q 037368 493 LKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPM-ETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVDF 571 (823)
Q Consensus 493 l~il~~~~~~~~~al~yl~~l~~~~~~~~i~k~~~~Ll~~~p~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (823)
=+.++++ |+|++|+++...- ++.....+.+++.-+++...- .+.+++-+. ..+.+.+
T Consensus 365 Wk~yLd~-g~y~kAL~~ar~~-p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------------------~~~FEEV 422 (911)
T KOG2034|consen 365 WKTYLDK-GEFDKALEIARTR-PDALETVLLKQADFLFQDKEYLRAAEIYAET--------------------LSSFEEV 422 (911)
T ss_pred HHHHHhc-chHHHHHHhccCC-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------------------hhhHHHH
Confidence 3455555 8899999877664 333444566777666665421 111121111 1223334
Q ss_pred Hhhhcc--CcHHHHHHHHHHHhhcCCCC--chhhHHHHHHHHhccccccCCcccccCcccccccccCCCCCCcccCCccc
Q 037368 572 LNIFVH--HPESLMDFLEKYTNKVKDSP--AQVEIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAEYNGEVT 647 (823)
Q Consensus 572 ~~~f~~--~~~~~~~yLe~~i~~~~~~~--~~~~~~n~llelyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 647 (823)
.=-|+. .++-+..||.+=+.+.+..+ ....+-+=|+++||.+ ++....
T Consensus 423 aLKFl~~~~~~~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~-Ln~l~~--------------------------- 474 (911)
T KOG2034|consen 423 ALKFLEINQERALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQ-LNDLDS--------------------------- 474 (911)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHH-Hhcccc---------------------------
Confidence 333432 45567778877766654111 1234667799999998 554210
Q ss_pred cCCCCCCCCcc-------hHHHHHHHHHHHhhcCCCCCCCCCCChhhHHHHHHhcCCchhHHHHHHHhccHHHHHHHHHh
Q 037368 648 ADGKDTYKGKD-------VLERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQ 720 (823)
Q Consensus 648 ~~~~~~~~~~~-------~~~~~~kll~~L~~~~~~~~~~~~Yd~~~aL~lc~~~~~~~~~v~L~~k~g~~~~al~~~~~ 720 (823)
.+++. ..+...+++.|+.. +...-|.+-+..+|..++-.+.+++.-.-|+.|+..+.++++
T Consensus 475 ------~de~~~en~~~~~~~~~re~~~~~~~------~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d~~~vv~~~~q 542 (911)
T KOG2034|consen 475 ------TDEEALENWRLEYDEVQREFSKFLVL------HKDELNRETVYQLLASHGRQEELLQFANLIKDYEFVVSYWIQ 542 (911)
T ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHh------hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 22234446666655 456677888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCCCCHHHHHHHHHHHHhCCCCChHHHHHHhcCCCCc
Q 037368 721 AHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERDDILPPIVVLQTLSRNPCL 792 (823)
Q Consensus 721 ~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~~~~~~i~~~L~~i~~~~~l~p~~vl~~l~~~~~~ 792 (823)
.+..+.|++...+.- +++|..+..--++... + ..+.... +...++++|..+..+|+-+...
T Consensus 543 ~e~yeeaLevL~~~~------~~el~yk~ap~Li~~~--p-~~tV~~w--m~~~d~~~~~li~~~L~~~~~~ 603 (911)
T KOG2034|consen 543 QENYEEALEVLLNQR------NPELFYKYAPELITHS--P-KETVSAW--MAQKDLDPNRLIPPILSYFSNW 603 (911)
T ss_pred HHHHHHHHHHHHhcc------chhhHHHhhhHHHhcC--c-HHHHHHH--HHccccCchhhhHHHHHHHhcC
Confidence 888888888777653 4566433222222211 0 1122222 2334478888888877544433
No 370
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.61 E-value=6 Score=40.32 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=104.1
Q ss_pred cCCeEEEEc-CCCeeeEeEee---cccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceE
Q 037368 43 DDGAVSLLD-RGLKFNFGFQA---HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCI 118 (823)
Q Consensus 43 ~dG~i~~~d-~~~~~~~~~~~---H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~ 118 (823)
.+|+|..|| .+|+.+.+..- ..+.+.. ..++++.+++++.++. |..||.... ..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---------l~~~d~~tG----------~~~ 59 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT--AVPDGGRVYVASGDGN---------LYALDAKTG----------KVL 59 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET--EEEETTEEEEEETTSE---------EEEEETTTS----------EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce--EEEeCCEEEEEcCCCE---------EEEEECCCC----------CEE
Confidence 378999999 68998766643 2222222 2335667777777776 999998632 233
Q ss_pred EEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccccccccc-ceeEEecC--CCC-cceEEEeecCCeE
Q 037368 119 GILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERIT-RFKLQVDN--QCS-VMGLGFRVDGQAL 194 (823)
Q Consensus 119 ~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~-k~~~~~~~--~~~-It~l~fs~dg~~~ 194 (823)
-...... .. ....... +.. +.+++.+|.|..++.. .+. ..+..... ..+ ........++.
T Consensus 60 W~~~~~~--~~---~~~~~~~--~~~---v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-- 123 (238)
T PF13360_consen 60 WRFDLPG--PI---SGAPVVD--GGR---VYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGD-- 123 (238)
T ss_dssp EEEECSS--CG---GSGEEEE--TTE---EEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETT--
T ss_pred EEeeccc--cc---cceeeec--ccc---cccccceeeeEecccC----CcceeeeeccccccccccccccCceEecC--
Confidence 2333211 00 1112222 235 6777778888888742 121 11111111 111 11222322332
Q ss_pred EEEEEc-CCeEEEEEecCCCCcceEEccCC----Cc------cceecccCCCeEEEeeCC-eEEEEecCCCCcccccc-C
Q 037368 195 QLFAVT-PNSVILFSLQNQPPKRQFLDNIG----CS------TNSVAMSDRLELIIGRPE-AVYFYEVDGRGPCWAFE-G 261 (823)
Q Consensus 195 ~l~~~t-~~~V~~~d~~~~~~~~~~l~~~~----~~------~~~~~~s~~~~liv~~~~-~I~i~~~~g~~~~~~~~-g 261 (823)
.+++++ .+.|..+|..+.. ..-...... .. ..+-....++.+.++..+ .+..++.......+... +
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~~~ 202 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKPIS 202 (238)
T ss_dssp EEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEECSS
T ss_pred EEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEecCC
Confidence 344444 6779999976432 111111111 00 111111224455555433 33333665322112111 1
Q ss_pred CeEE-EEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEe
Q 037368 262 EKKL-LGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS 300 (823)
Q Consensus 262 ~~~~-i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~ 300 (823)
.... ....+..+++.+ .++.|.+||+.++.+.++
T Consensus 203 ~~~~~~~~~~~~l~~~~-----~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTS-----SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -ECECEECCCTEEEEEE-----TTTEEEEEETTTTEEEEE
T ss_pred CccCCceeeCCEEEEEe-----CCCEEEEEECCCCCEEeE
Confidence 1222 445677887776 258999999999887764
No 371
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.49 E-value=10 Score=42.41 Aligned_cols=254 Identities=12% Similarity=0.032 Sum_probs=119.2
Q ss_pred eCCCEEEEEecCCeEEEEc-CCCeeeEeEeecc--c--------cee-EEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 33 SGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHS--S--------SVL-FLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 33 ~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~--~--------~V~-~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
..++.+++++.+|.|.-+| .+|+.+-+++-.. . .+. .+.+ .++.++.++.++. +..+
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~---------l~al 135 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQ---------VYAL 135 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCE---------EEEE
Confidence 3567899999999999999 6788764443211 0 111 1222 3455666667776 8888
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCC
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC 180 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~ 180 (823)
|..+.+ . +=..+... .. ..+-.+. + .. +.++..+|.|.-++.. .+ +..--.+...
T Consensus 136 d~~tG~--------~--~W~~~~~~--~~---~ssP~v~-~-~~---v~v~~~~g~l~ald~~----tG-~~~W~~~~~~ 190 (394)
T PRK11138 136 NAEDGE--------V--AWQTKVAG--EA---LSRPVVS-D-GL---VLVHTSNGMLQALNES----DG-AVKWTVNLDV 190 (394)
T ss_pred ECCCCC--------C--cccccCCC--ce---ecCCEEE-C-CE---EEEECCCCEEEEEEcc----CC-CEeeeecCCC
Confidence 876432 1 11111110 00 1111222 2 24 6667778888877742 11 1110011111
Q ss_pred Cc------ceEEEeecCCeEEEEEEcCCeEEEEEecCCCC-cceEEc-cCC-Cc---cceecccC---CCeEEE-eeCCe
Q 037368 181 SV------MGLGFRVDGQALQLFAVTPNSVILFSLQNQPP-KRQFLD-NIG-CS---TNSVAMSD---RLELII-GRPEA 244 (823)
Q Consensus 181 ~I------t~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~-~~~~l~-~~~-~~---~~~~~~s~---~~~liv-~~~~~ 244 (823)
+. .+-.. .++ .+++.+.++.+..++..+... ....+. ..+ .. ...+..+| ++.+.+ +.++.
T Consensus 191 ~~~~~~~~~sP~v-~~~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 191 PSLTLRGESAPAT-AFG--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CcccccCCCCCEE-ECC--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 11 01011 122 233333445677777654221 111110 000 00 01111223 555544 45567
Q ss_pred EEEEecCCCCcccccc-CCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccc-cc--eeEEEeecCcEEEEE
Q 037368 245 VYFYEVDGRGPCWAFE-GEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVV-KE--VSHMLCEWGNIILVM 320 (823)
Q Consensus 245 I~i~~~~g~~~~~~~~-g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i-~~--v~~v~~~~~~~~vvs 320 (823)
++.++.......+..+ +........++.+.+++ .++.+..+|..++.+.++... .. ........+.+|+.+
T Consensus 268 l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~-----~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 268 LVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVD-----QNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred EEEEECCCCCEEEeecCCCccCcEEECCEEEEEc-----CCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEe
Confidence 8888775221122211 11112334566666665 357899999988777664431 11 111112345677777
Q ss_pred cCCeEEEEee
Q 037368 321 TDKSVLCIGE 330 (823)
Q Consensus 321 ~~~~v~~l~~ 330 (823)
.+|.++.+..
T Consensus 343 ~~G~l~~ld~ 352 (394)
T PRK11138 343 SEGYLHWINR 352 (394)
T ss_pred CCCEEEEEEC
Confidence 7777776653
No 372
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.42 E-value=8 Score=40.97 Aligned_cols=244 Identities=13% Similarity=0.100 Sum_probs=123.2
Q ss_pred CEEEEEecCCeE-EEEc-CCCeeeEeEeecccc--eeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCC
Q 037368 36 GKVVIGCDDGAV-SLLD-RGLKFNFGFQAHSSS--VLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTS 111 (823)
Q Consensus 36 ~~l~~gs~dG~i-~~~d-~~~~~~~~~~~H~~~--V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~ 111 (823)
..+++|-.-|+. .+|| .+++....+.+-.+. --+-.|+++|++|.|.=.|-.. +.-+|-|||....
T Consensus 18 ~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~----g~G~IgVyd~~~~------ 87 (305)
T PF07433_consen 18 EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET----GRGVIGVYDAARG------ 87 (305)
T ss_pred eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC----CcEEEEEEECcCC------
Confidence 355677666654 4566 556655444433222 1235899999999887444311 2234999999831
Q ss_pred CCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecC
Q 037368 112 STSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDG 191 (823)
Q Consensus 112 ~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg 191 (823)
..-+..+..+. . ...-+.+.||+.. ++++ ||-|..- .+ ..|.++..+. |. |
T Consensus 88 ---~~ri~E~~s~G--I---GPHel~l~pDG~t---LvVA--NGGI~Th-pd-----~GR~kLNl~t------M~--p-- 138 (305)
T PF07433_consen 88 ---YRRIGEFPSHG--I---GPHELLLMPDGET---LVVA--NGGIETH-PD-----SGRAKLNLDT------MQ--P-- 138 (305)
T ss_pred ---cEEEeEecCCC--c---ChhhEEEcCCCCE---EEEE--cCCCccC-cc-----cCceecChhh------cC--C--
Confidence 12333444332 1 1467889999988 8887 7877643 11 0111111110 00 1
Q ss_pred CeEEEEE-EcCCe-EEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeC------C---eEEEEecCCCCcc----
Q 037368 192 QALQLFA-VTPNS-VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRP------E---AVYFYEVDGRGPC---- 256 (823)
Q Consensus 192 ~~~~l~~-~t~~~-V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~------~---~I~i~~~~g~~~~---- 256 (823)
.+.+. ..++. +--|.+.. +.|...+.-+++.++|..+.+.. + -|-+++..+.-..
T Consensus 139 --sL~~ld~~sG~ll~q~~Lp~--------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p 208 (305)
T PF07433_consen 139 --SLVYLDARSGALLEQVELPP--------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAP 208 (305)
T ss_pred --ceEEEecCCCceeeeeecCc--------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCC
Confidence 11121 11111 22222211 01122233344555555444421 0 1222222110000
Q ss_pred ----ccccCCeEEEEeeC--cEEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEEEeecCcEEEEEcCCeEEEEee
Q 037368 257 ----WAFEGEKKLLGWFR--GYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHMLCEWGNIILVMTDKSVLCIGE 330 (823)
Q Consensus 257 ----~~~~g~~~~i~~~~--~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v~~~~~~~~vvs~~~~v~~l~~ 330 (823)
..+.+-.-+|++.+ .++++.|+ ..+.+.+||..++...-...+.+++.+-...+++++.+..|.++.+.+
T Consensus 209 ~~~~~~l~~Y~gSIa~~~~g~~ia~tsP----rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 209 EEQWRRLNGYIGSIAADRDGRLIAVTSP----RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDGFLVSSGQGQLIRLSP 284 (305)
T ss_pred hHHHHhhCCceEEEEEeCCCCEEEEECC----CCCEEEEEECCCCCEeeccccCceeeeeecCCceEEeCCCccEEEccC
Confidence 12223333455543 46666665 568999999998887777778887777655566555566677777754
Q ss_pred cC
Q 037368 331 KD 332 (823)
Q Consensus 331 ~~ 332 (823)
..
T Consensus 285 ~~ 286 (305)
T PF07433_consen 285 DG 286 (305)
T ss_pred cc
Confidence 33
No 373
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.39 E-value=3.6 Score=50.14 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHHH
Q 037368 334 ESKLDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNL 412 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~L 412 (823)
...+..+...++++.|+++|+.. ...+.. ...+-..|--+++++++++|+.. . ++..|...... .+
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~-i~~yy~~G~l~~q~~~~~~~~lv--~---------~l~~~~~~~~~-~~ 101 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKS-ISALYISGILSLSRRPLNDSNLL--N---------LIDSFSQNLKW-AI 101 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-eehHHHHHHHHHhhcchhhhhhh--h---------hhhhcccccch-hH
Confidence 34455566889999999999852 112222 22333335567788888888866 2 23334333323 66
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHhcCChhh
Q 037368 413 TNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEK 445 (823)
Q Consensus 413 ~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~ 445 (823)
+.|+......-..+..--..|-.||.++++.++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~k 134 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKK 134 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHH
Confidence 777765221111222223446779999987654
No 374
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=2.9 Score=44.35 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=76.7
Q ss_pred HHHHHHhccHHHHHHHHHh-cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC-hHHH-----HHHhhchhhH
Q 037368 337 LDMLFKKNLYTVAINLVQS-QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE-PSYV-----IQKFLDAQRI 409 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~-~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e-ps~v-----I~kFl~~~~~ 409 (823)
++-++.+..|.-|+.+.+- .+++.++-+++..=-|.-.|.-|||++|+.+|--....-+ |+++ +-+|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F------ 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF------ 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH------
Confidence 7888999999999998875 3455444444444445556788999999999976644433 3332 2344
Q ss_pred HHHHHHHHH--HHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcC
Q 037368 410 YNLTNYLEK--LHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKG 452 (823)
Q Consensus 410 ~~L~~YL~~--l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~ 452 (823)
.|-.|.++ +-.+-..+.-...||++.-.|++|.+++..|=++
T Consensus 103 -yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 103 -YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred -HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 57778877 3333445677888999999999999888888544
No 375
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.27 E-value=2.3 Score=47.20 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=9.6
Q ss_pred HhhhhccCCCHHHHHHHHHHH
Q 037368 370 YGDHLYSKQDYDEAMSQYILT 390 (823)
Q Consensus 370 y~d~L~~k~~y~~A~~~y~~t 390 (823)
.+.-+..+|+|++|++.|.+.
T Consensus 147 la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHH
Confidence 344444445555554444443
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.19 E-value=0.11 Score=38.45 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=27.3
Q ss_pred CceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 131 AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 131 ~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
+.|++++|+|.... +|+|+.+|.|.+++.+
T Consensus 12 ~~v~~~~w~P~mdL---iA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDL---IALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCE---EEEEECCCeEEEEECC
Confidence 34999999999999 9999999999999863
No 377
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.17 E-value=5.2 Score=41.33 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred EEEeeCCCEEEEEecCCeEEEEcCCCeeeEeEee-c------ccceeEEEEecCC------CEEEEEecCCCCcccccce
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLDRGLKFNFGFQA-H------SSSVLFLQQLKQR------NFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~~-H------~~~V~~i~~~~~~------~~l~s~s~D~~~~~~~~~~ 95 (823)
-|+..+...||.+...|+|+++|-.|..+....+ + +..|..|.|.+-. ..|+....+|.
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-------- 120 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-------- 120 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccce--------
Confidence 3443444678999999999999966665544432 2 2467777776521 23566667765
Q ss_pred eEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEE-eCC----------eEEEEEcc-
Q 037368 96 CLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGL-DNG----------CIYCIKGD- 163 (823)
Q Consensus 96 ~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~-~dG----------~V~l~~~~- 163 (823)
++=+-+.... +...+...++.. ...+| ..|+++.++|.-+. +.+|+ ..+ .+.-||.-
T Consensus 121 -L~Sy~vs~gt-----~q~y~e~hsfsf-~~~yp-~Gi~~~vy~p~h~L---LlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 121 -LRSYLVSVGT-----NQGYQENHSFSF-SSHYP-HGINSAVYHPKHRL---LLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred -eeeEEEEccc-----CCcceeeEEEEe-cccCC-CceeEEEEcCCCCE---EEEeccCCCCCccccccccCceEEEEcC
Confidence 5555442110 001122334432 22345 45999999998766 55553 322 24456520
Q ss_pred --------------cc--cccccceeE----Ee----cCCCCcceEEEeecCCeEEEEEE-cCCeEEEEEecC
Q 037368 164 --------------IA--RERITRFKL----QV----DNQCSVMGLGFRVDGQALQLFAV-TPNSVILFSLQN 211 (823)
Q Consensus 164 --------------~~--~~~~~k~~~----~~----~~~~~It~l~fs~dg~~~~l~~~-t~~~V~~~d~~~ 211 (823)
+. ..+..-.++ ++ ....-|..|+.||||+ .|++. +.+.|.+|++..
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~--~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS--LLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC--EEEEEEcCCeEEEEecCc
Confidence 00 000000111 11 1245688999999994 45544 567799999864
No 378
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.14 E-value=6 Score=47.07 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHhhhcc--CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 571 FLNIFVH--HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 571 ~~~~f~~--~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
+..+|.+ +++.+++||--++...... ...+|=.+-++|...
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARCYMEL 462 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHHHHHH
Confidence 3344443 6788899998888665433 357888888888775
No 379
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.82 E-value=9.6 Score=41.16 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.8
Q ss_pred eecChHHHHHHHHHhccHHHHHHHHHhc
Q 037368 329 GEKDMESKLDMLFKKNLYTVAINLVQSQ 356 (823)
Q Consensus 329 ~~~~~~~~i~~L~~~~~f~~Al~la~~~ 356 (823)
.|.....+|..|++-+.++.||.=|-.+
T Consensus 25 ~Ep~~~~qVplLL~m~e~e~AL~kAi~S 52 (319)
T PF04840_consen 25 LEPRASKQVPLLLKMGEDELALNKAIES 52 (319)
T ss_pred cCCChHHHHHHHhcCCchHHHHHHHHHc
Confidence 4667789999999999999999887654
No 380
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.21 Score=56.30 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=61.9
Q ss_pred CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE-ec-CCCCcc-eEEEeecCCeEEEEEEc-CCeEEE
Q 037368 131 AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ-VD-NQCSVM-GLGFRVDGQALQLFAVT-PNSVIL 206 (823)
Q Consensus 131 ~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~-~~-~~~~It-~l~fs~dg~~~~l~~~t-~~~V~~ 206 (823)
..+..+.|+|.-.. ||.+..+|.|.+.|..+ ++++ .. ++.+++ +++|.||| ..++++- +++|++
T Consensus 21 ~~i~~~ewnP~~dL---iA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DG--kllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNPKMDL---IATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDG--KLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcCccch---hheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCC--CEEEEEecCCeEEE
Confidence 34888999999999 99999999999998642 3333 22 566777 99999999 4677775 567999
Q ss_pred EEecCCCCcceEEccCCCccceeccc
Q 037368 207 FSLQNQPPKRQFLDNIGCSTNSVAMS 232 (823)
Q Consensus 207 ~d~~~~~~~~~~l~~~~~~~~~~~~s 232 (823)
.|...+......+-.....+.|..|+
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred EEccCCCceeccccccccchheeecc
Confidence 99986542211111112345566664
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.81 E-value=0.13 Score=61.12 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=52.5
Q ss_pred CCCeEEEeeC-CCEEEEEecCCeEEEEcCCCeeeE-eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 25 SGNITCCSSG-RGKVVIGCDDGAVSLLDRGLKFNF-GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 25 ~~~is~~~~~-~~~l~~gs~dG~i~~~d~~~~~~~-~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
..+.+|++.. .|+||+||.+|.||+||+.|+.-+ .|.|-..+|.+|.++.+|.+++.... + ++-+++.
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--t--------yLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--T--------YLLLIDT 646 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--c--------eEEEEEE
Confidence 5568888875 689999999999999997664333 45677889999999999999754332 2 2777776
Q ss_pred C
Q 037368 103 D 103 (823)
Q Consensus 103 ~ 103 (823)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 4
No 382
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.68 E-value=20 Score=42.79 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=40.4
Q ss_pred HHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHH
Q 037368 337 LDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSY 398 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~ 398 (823)
=..+++.++|+.|++.-+.. .+.++ ...+...|.-++..|+|++|+..|-+.+. ++|..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l~p~~ 193 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALE-LDPDY 193 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhCCHHHHHHHHHHHHH-cCCCC
Confidence 34667789999999876552 22222 23455557778888999999999988764 44543
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.64 E-value=9.7 Score=40.86 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=92.8
Q ss_pred EEEEecCCeEEEEcCC-CeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCc
Q 037368 38 VVIGCDDGAVSLLDRG-LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPD 116 (823)
Q Consensus 38 l~~gs~dG~i~~~d~~-~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~ 116 (823)
+++.-..+.|+-|+.. ++ .+.|.... .+.++.....+..|++|. .+ +.+++.+.. ..
T Consensus 40 ~w~DI~~~~i~r~~~~~g~-~~~~~~p~-~~~~~~~~d~~g~Lv~~~-~g----------~~~~~~~~~--------~~- 97 (307)
T COG3386 40 LWVDILGGRIHRLDPETGK-KRVFPSPG-GFSSGALIDAGGRLIACE-HG----------VRLLDPDTG--------GK- 97 (307)
T ss_pred EEEeCCCCeEEEecCCcCc-eEEEECCC-CcccceeecCCCeEEEEc-cc----------cEEEeccCC--------ce-
Confidence 4555678899999954 54 34666544 344444444555666664 44 677777432 11
Q ss_pred eEEEE-EeccCCCCCCceEEEEEecCCCCcceEEEEEeCC----------eEEEEEcccccccccceeEEecCCCCcceE
Q 037368 117 CIGIL-RVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG----------CIYCIKGDIARERITRFKLQVDNQCSVMGL 185 (823)
Q Consensus 117 ~~~~~-~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG----------~V~l~~~~~~~~~~~k~~~~~~~~~~It~l 185 (823)
...+ .... ..+..+.+-+.++|+|+. .+|...+ .-.||+.+- .+...+.+...-.--++|
T Consensus 98 -~t~~~~~~~-~~~~~r~ND~~v~pdG~~----wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGl 168 (307)
T COG3386 98 -ITLLAEPED-GLPLNRPNDGVVDPDGRI----WFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGL 168 (307)
T ss_pred -eEEeccccC-CCCcCCCCceeEcCCCCE----EEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCce
Confidence 0111 1111 112233577788888764 4444330 112343321 122222222211223489
Q ss_pred EEeecCCeEEEEEEcC--CeEEEEEecC-CCC---cc-eE-EccCCCccceecccCCCeEE-Ee-eC-CeEEEEecCCC
Q 037368 186 GFRVDGQALQLFAVTP--NSVILFSLQN-QPP---KR-QF-LDNIGCSTNSVAMSDRLELI-IG-RP-EAVYFYEVDGR 253 (823)
Q Consensus 186 ~fs~dg~~~~l~~~t~--~~V~~~d~~~-~~~---~~-~~-l~~~~~~~~~~~~s~~~~li-v~-~~-~~I~i~~~~g~ 253 (823)
+||||++ .++++.. +.|.-|++.. ... .. .+ ++.....+.-++...+|.+. ++ ++ +.|.+|+++|+
T Consensus 169 a~SpDg~--tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 169 AFSPDGK--TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred EECCCCC--EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc
Confidence 9999995 6776644 5677777752 111 11 11 11222234445666677765 32 33 38999999865
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.60 E-value=9.1 Score=39.63 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=39.5
Q ss_pred EeecCCeEEEEEEcCC-----e-EEEEEecCCCCcceEEccCCCccceecccCCCeEEEeeCCeEEE
Q 037368 187 FRVDGQALQLFAVTPN-----S-VILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIGRPEAVYF 247 (823)
Q Consensus 187 fs~dg~~~~l~~~t~~-----~-V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~liv~~~~~I~i 247 (823)
||+|| ..||++..+ + |-+||.+.+-+-.-.++.||-.+--++|.+||+.+++-+++|..
T Consensus 121 fs~dG--~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 121 FSPDG--RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred cCCCC--cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 88999 578877432 2 77999875433233355677777778888999877665555544
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=20 Score=42.07 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe
Q 037368 44 DGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV 123 (823)
Q Consensus 44 dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~ 123 (823)
.-.|.|++..|.++.+.-...+.+..|.|+.+ ..|+.+..||+ +.|+++.... ++...+
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~---------v~Vy~~~ge~-----------ie~~sv 121 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDD-EELICVQKDGT---------VHVYGLLGEF-----------IESNSV 121 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCC-ceEEEEeccce---------EEEeecchhh-----------hccccc
Confidence 34588888888876555444458999999754 66888999998 9999987421 111000
Q ss_pred -ccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEc
Q 037368 124 -FTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKG 162 (823)
Q Consensus 124 -~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~ 162 (823)
+....+ .-+.|-.|+ +| +|+=..+|.|.+..+
T Consensus 122 g~e~~~~-~I~ec~~f~-~G-----Vavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 122 GFESQMS-DIVECRFFH-NG-----VAVLTVSGQVILING 154 (829)
T ss_pred ccccccC-ceeEEEEec-Cc-----eEEEecCCcEEEEcC
Confidence 100011 114444555 33 777777999998865
No 386
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.38 E-value=1.1 Score=41.05 Aligned_cols=113 Identities=15% Similarity=0.184 Sum_probs=63.3
Q ss_pred EecCCCCcceEEEEEeCCeEEEEEcccccccc--c-ceeEEecCCCCcceEEEee---cCCeEEEEEEcCCeEEEEEecC
Q 037368 138 VLEEAPPILLIAIGLDNGCIYCIKGDIARERI--T-RFKLQVDNQCSVMGLGFRV---DGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 138 ~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~--~-k~~~~~~~~~~It~l~fs~---dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
|+....+ +|+++..|+|.+++..-...+. . .......-+..|++|+=.+ +.....|++++.+.+..||+..
T Consensus 6 fDG~~pc---L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 6 FDGVHPC---LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred eCCCcee---EEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 4444446 9999999999999753111111 0 1111233366788885433 3333689999999999999976
Q ss_pred CCCcceEEccCCCccceeccc---C-CCeEEE-eeCCeEEEEecCCCCc
Q 037368 212 QPPKRQFLDNIGCSTNSVAMS---D-RLELII-GRPEAVYFYEVDGRGP 255 (823)
Q Consensus 212 ~~~~~~~l~~~~~~~~~~~~s---~-~~~liv-~~~~~I~i~~~~g~~~ 255 (823)
+... ...+-...++++.+- . +..+++ |+.-+|+-||.+|...
T Consensus 83 N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 83 NSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred Cchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 5421 111112234554432 2 334554 4444677777776543
No 387
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.38 E-value=17 Score=40.96 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=65.8
Q ss_pred HhccHHHHHHHHHhc-CC-CHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC-hH-HH----HHHhhchhhHHHHH
Q 037368 342 KKNLYTVAINLVQSQ-QA-DAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE-PS-YV----IQKFLDAQRIYNLT 413 (823)
Q Consensus 342 ~~~~f~~Al~la~~~-~~-~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e-ps-~v----I~kFl~~~~~~~L~ 413 (823)
..|+|+.|.+.+.+. .. |...+..+ .-|.....+|+++.|.+.|.+...... +. .+ .+-.+..++.+.=.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~l--laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLI--KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 568999999887652 22 21122222 347777888999999998887533221 11 11 23334556666666
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhh
Q 037368 414 NYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFI 450 (823)
Q Consensus 414 ~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi 450 (823)
..++.+.+....+..-..++...|...+|-+...+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l 210 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDII 210 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6788877766555655667777888888765444443
No 388
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.02 E-value=28 Score=42.68 Aligned_cols=136 Identities=4% Similarity=-0.067 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHhCC-----hHH----HHHHHHHhhcCHHHHHHHHhcC---ChHH---HHHHHHHHHHH-HHhcC
Q 037368 470 CRAANYHEHAMYVAKKAGK-----HEL----YLKILLEDLGRYDEALQYISSL---DPSQ---AGVTVKEYGKI-LIEHK 533 (823)
Q Consensus 470 l~~~g~~~~a~~la~~~~~-----~~~----~l~il~~~~~~~~~al~yl~~l---~~~~---~~~~i~k~~~~-Ll~~~ 533 (823)
+.+.|++++|+...++.-. ... +-.+++.. +++++|+.++.++ ++.. ......+.+.. +-...
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 4566888888876664221 111 23344444 8999999988763 1111 01122222222 23456
Q ss_pred CHHHHHHHHHHhhcCCCCcccCCCCCcccCCCCCHHH------HHhhh--ccCcHHHHHHHHHHHhhcCCCCchhhHHHH
Q 037368 534 PMETIDILLRLCTEDGESTKRGASSSTYMSMLPSPVD------FLNIF--VHHPESLMDFLEKYTNKVKDSPAQVEIHNT 605 (823)
Q Consensus 534 p~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~f--~~~~~~~~~yLe~~i~~~~~~~~~~~~~n~ 605 (823)
++++++.+-++............ .....|++.. ...++ .++....+..|+.++...|.. ..++..
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~----~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---~~l~~~ 398 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYG----SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN---QGLRID 398 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecC----CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 67777776665432110000000 0011233221 11111 246778888899988876643 577788
Q ss_pred HHHHhccc
Q 037368 606 LLELYLSY 613 (823)
Q Consensus 606 llelyl~~ 613 (823)
+..+|...
T Consensus 399 lA~l~~~~ 406 (765)
T PRK10049 399 YASVLQAR 406 (765)
T ss_pred HHHHHHhc
Confidence 88888664
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.85 E-value=5.8 Score=45.10 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=77.2
Q ss_pred eEEEEEecCCCCcc-e-EEEEEeCCeEEEEEcccccccccceeEE--ecC--CCCcc--eEEEeecCCeEEEEEEcCCeE
Q 037368 133 ITSFLVLEEAPPIL-L-IAIGLDNGCIYCIKGDIARERITRFKLQ--VDN--QCSVM--GLGFRVDGQALQLFAVTPNSV 204 (823)
Q Consensus 133 v~~va~~~d~~~~~-~-ia~G~~dG~V~l~~~~~~~~~~~k~~~~--~~~--~~~It--~l~fs~dg~~~~l~~~t~~~V 204 (823)
|..++|.|-+...- + +|+-. ...|.+|..........|...- .+- .-||- |..|+|.. .+|.+-|...+
T Consensus 59 V~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dv 135 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDV 135 (671)
T ss_pred eeeeeecCcccCCCCceEEEec-cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCce
Confidence 88999988653111 1 66644 7789999865321111222211 121 22333 78899876 57777777665
Q ss_pred -EEEEecCCCC-cceEEccCCCccceecccCCCe-EEEeeCCe--EEEEecCCCC--c---c--ccccCCeEEEEeeCcE
Q 037368 205 -ILFSLQNQPP-KRQFLDNIGCSTNSVAMSDRLE-LIIGRPEA--VYFYEVDGRG--P---C--WAFEGEKKLLGWFRGY 272 (823)
Q Consensus 205 -~~~d~~~~~~-~~~~l~~~~~~~~~~~~s~~~~-liv~~~~~--I~i~~~~g~~--~---~--~~~~g~~~~i~~~~~y 272 (823)
.++++...+. .+.-+ ..+..+.|.||..||+ ++|+-+++ -++||-.-+. + | +..+|....+....+.
T Consensus 136 SV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred eEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence 3455543321 22223 2345678999998886 66666665 4678754221 1 1 3345555556555554
Q ss_pred EEEE
Q 037368 273 LLCV 276 (823)
Q Consensus 273 lv~~ 276 (823)
-|++
T Consensus 215 qVAv 218 (671)
T PF15390_consen 215 QVAV 218 (671)
T ss_pred eEEE
Confidence 3433
No 390
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.63 E-value=19 Score=39.60 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=36.9
Q ss_pred ecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 42 CDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 42 s~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
+..+.+.+|| .+++.. .+......+....++|+|+.+|-+.+.. |-++++..
T Consensus 20 s~~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~~~n----------ly~~~~~~ 72 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVRDNN----------LYLRDLAT 72 (353)
T ss_dssp EEEEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEETTE----------EEEESSTT
T ss_pred ccceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEecCc----------eEEEECCC
Confidence 3456788999 555544 3333367899999999999999887654 88888763
No 391
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.51 E-value=0.046 Score=61.35 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=111.3
Q ss_pred CeEEEeeCC----CEEEEEecCCeEEEEc-CCC--eeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEE
Q 037368 27 NITCCSSGR----GKVVIGCDDGAVSLLD-RGL--KFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLK 98 (823)
Q Consensus 27 ~is~~~~~~----~~l~~gs~dG~i~~~d-~~~--~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vk 98 (823)
.+-|++..- ..+++|..+|.|-+.. ++. .--....+|...-++++|.+ |.++||.+ -|..-. ..+++
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrn----ds~~~ 132 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHRN----DSSLK 132 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhcc----cCCcc
Confidence 467776532 3679999999999987 321 11113346778899999987 45666654 443211 11299
Q ss_pred EEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecC
Q 037368 99 VFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDN 178 (823)
Q Consensus 99 vWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~ 178 (823)
|||+.+.- ..|.- +...+. .......++++..+-.. +.+|+...+|++++.. ....+...-.
T Consensus 133 Iwdi~s~l------tvPke--~~~fs~--~~l~gqns~cwlrd~kl---vlaGm~sr~~~ifdlR-----qs~~~~~svn 194 (783)
T KOG1008|consen 133 IWDINSLL------TVPKE--SPLFSS--STLDGQNSVCWLRDTKL---VLAGMTSRSVHIFDLR-----QSLDSVSSVN 194 (783)
T ss_pred ceeccccc------CCCcc--cccccc--ccccCccccccccCcch---hhcccccchhhhhhhh-----hhhhhhhhhh
Confidence 99998642 01210 101111 01122568888877666 9999988899998641 1110100001
Q ss_pred CCCcceEEEee-cCCeEEEEEEcCCeEEEEEecCCC-CcceEE-ccC---CCccceecccC--CCeEEE-eeC-CeEEEE
Q 037368 179 QCSVMGLGFRV-DGQALQLFAVTPNSVILFSLQNQP-PKRQFL-DNI---GCSTNSVAMSD--RLELII-GRP-EAVYFY 248 (823)
Q Consensus 179 ~~~It~l~fs~-dg~~~~l~~~t~~~V~~~d~~~~~-~~~~~l-~~~---~~~~~~~~~s~--~~~liv-~~~-~~I~i~ 248 (823)
..-|.|+...| .+ ..++...++.|.+||..-+. .+...+ ... ...+..++|.| .|.+++ .++ .+|+.|
T Consensus 195 Tk~vqG~tVdp~~~--nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 195 TKYVQGITVDPFSP--NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred hhhcccceecCCCC--CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 22455666665 33 34555567779999943221 122222 111 11244566766 667766 454 478888
Q ss_pred ecC
Q 037368 249 EVD 251 (823)
Q Consensus 249 ~~~ 251 (823)
++.
T Consensus 273 di~ 275 (783)
T KOG1008|consen 273 DIC 275 (783)
T ss_pred ccc
Confidence 865
No 392
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.45 E-value=2.3 Score=47.89 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=82.3
Q ss_pred eEEEEEecCCCCcceEEEEE-e-CC--eEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCe---EE
Q 037368 133 ITSFLVLEEAPPILLIAIGL-D-NG--CIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNS---VI 205 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~-~-dG--~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~---V~ 205 (823)
+..-+|+|++.. ++.-. . .+ .+.+++.+ .+ +...+...++.-..-+|+|||+ .++++...++ |+
T Consensus 195 ~~~p~ws~~~~~---~~y~~f~~~~~~~i~~~~l~----~g-~~~~i~~~~g~~~~P~fspDG~-~l~f~~~rdg~~~iy 265 (425)
T COG0823 195 ILTPAWSPDGKK---LAYVSFELGGCPRIYYLDLN----TG-KRPVILNFNGNNGAPAFSPDGS-KLAFSSSRDGSPDIY 265 (425)
T ss_pred eeccccCcCCCc---eEEEEEecCCCceEEEEecc----CC-ccceeeccCCccCCccCCCCCC-EEEEEECCCCCccEE
Confidence 666788888876 44331 1 22 35556543 12 2222333344455667999996 5666665443 88
Q ss_pred EEEecCCCCcceEEccCCCccc-eecccCCCeEEE-ee--CC--eEEEEecCCCCcc-ccccCC---eEEEEeeCcEEEE
Q 037368 206 LFSLQNQPPKRQFLDNIGCSTN-SVAMSDRLELII-GR--PE--AVYFYEVDGRGPC-WAFEGE---KKLLGWFRGYLLC 275 (823)
Q Consensus 206 ~~d~~~~~~~~~~l~~~~~~~~-~~~~s~~~~liv-~~--~~--~I~i~~~~g~~~~-~~~~g~---~~~i~~~~~ylv~ 275 (823)
++|+.++. . ..+. ++..++ .-+|+|||+.++ ++ ++ .|++++.+|.... +++.+. .-.++++|++++.
T Consensus 266 ~~dl~~~~-~-~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 266 LMDLDGKN-L-PRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred EEcCCCCc-c-eecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 99988765 2 2243 222222 347899998654 33 33 5777888776432 233222 2245667888888
Q ss_pred EEecCCCCccEEEEEeCCC
Q 037368 276 VIADQRNSKNIFNVYDLKN 294 (823)
Q Consensus 276 ~s~d~~~~~~~I~I~D~~~ 294 (823)
.+... ..-.|.+.|+.+
T Consensus 343 ~~~~~--g~~~i~~~~~~~ 359 (425)
T COG0823 343 ESSSG--GQWDIDKNDLAS 359 (425)
T ss_pred EeccC--CceeeEEeccCC
Confidence 77321 112355555543
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.41 E-value=10 Score=40.54 Aligned_cols=187 Identities=13% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEeeCCCEEEEEecCCeEEEEcCCCeeeEe-EeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCC
Q 037368 29 TCCSSGRGKVVIGCDDGAVSLLDRGLKFNFG-FQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEP 107 (823)
Q Consensus 29 s~~~~~~~~l~~gs~dG~i~~~d~~~~~~~~-~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~ 107 (823)
...+.+++...+++..|.|..-...|+--+. ...-.+.+..+..+++|.+++.++...- ++-||-...
T Consensus 108 ~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~---------~~s~~~G~~-- 176 (302)
T PF14870_consen 108 GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF---------YSSWDPGQT-- 176 (302)
T ss_dssp EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE---------EEEE-TT-S--
T ss_pred EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE---------EEEecCCCc--
Confidence 3444455666666677776666533431111 1223477888888999987776644332 667775421
Q ss_pred CCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEE-cccccccccceeEEe--cCCCCcce
Q 037368 108 EGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIK-GDIARERITRFKLQV--DNQCSVMG 184 (823)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~-~~~~~~~~~k~~~~~--~~~~~It~ 184 (823)
. -+...... . .+|.++.|+||+.. ..++ .+|.|..-+ .+- . ........- ...-.|..
T Consensus 177 -------~--w~~~~r~~-~---~riq~~gf~~~~~l---w~~~-~Gg~~~~s~~~~~-~-~~w~~~~~~~~~~~~~~ld 237 (302)
T PF14870_consen 177 -------T--WQPHNRNS-S---RRIQSMGFSPDGNL---WMLA-RGGQIQFSDDPDD-G-ETWSEPIIPIKTNGYGILD 237 (302)
T ss_dssp -------S---EEEE--S-S---S-EEEEEE-TTS-E---EEEE-TTTEEEEEE-TTE-E-EEE---B-TTSS--S-EEE
T ss_pred -------c--ceEEccCc-c---ceehhceecCCCCE---EEEe-CCcEEEEccCCCC-c-cccccccCCcccCceeeEE
Confidence 0 11111001 1 34999999999766 5554 688888766 110 0 000000000 01223678
Q ss_pred EEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEE--ccCCCccceecccC-CCeEEEeeCCeEEEE
Q 037368 185 LGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL--DNIGCSTNSVAMSD-RLELIIGRPEAVYFY 248 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l--~~~~~~~~~~~~s~-~~~liv~~~~~I~i~ 248 (823)
++|++++ .++++..++..+...++.....+.- +.....++.+.|.+ +.-|++|.++.|--|
T Consensus 238 ~a~~~~~---~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 238 LAYRPPN---EIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEESSSS----EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEecCCC---CEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 8998775 4666666655556555433232222 12234456666654 445788877655333
No 394
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.37 E-value=3 Score=43.89 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=77.2
Q ss_pred cCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcc--e
Q 037368 140 EEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKR--Q 217 (823)
Q Consensus 140 ~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~--~ 217 (823)
..++. +++|+.+| |.+++.. ...+...+. ...+|+.|...++- ..+++-+++.+.+|++..-.... .
T Consensus 5 ~~~~~---L~vGt~~G-l~~~~~~----~~~~~~~i~-~~~~I~ql~vl~~~--~~llvLsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDR---LLVGTEDG-LYVYDLS----DPSKPTRIL-KLSSITQLSVLPEL--NLLLVLSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCE---EEEEECCC-EEEEEec----CCccceeEe-ecceEEEEEEeccc--CEEEEEcCCccEEEEchhhccccccc
Confidence 34557 99998888 7777651 111222222 23349999988865 36777778889999986422111 0
Q ss_pred ------------EE-ccCCCccceecccC-CC-eEEEeeCCeEEEEecCCC---C-c---cccccCCeEEEEeeCcEEEE
Q 037368 218 ------------FL-DNIGCSTNSVAMSD-RL-ELIIGRPEAVYFYEVDGR---G-P---CWAFEGEKKLLGWFRGYLLC 275 (823)
Q Consensus 218 ------------~l-~~~~~~~~~~~~s~-~~-~liv~~~~~I~i~~~~g~---~-~---~~~~~g~~~~i~~~~~ylv~ 275 (823)
.+ ...|+...+..-.+ .+ .++++....|.+|...+. . . -+.++..+..+.|.++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v 153 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICV 153 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEE
Confidence 11 11222222200112 22 355666678888765532 1 1 13455667889999988888
Q ss_pred EEecCCCCccEEEEEeCC
Q 037368 276 VIADQRNSKNIFNVYDLK 293 (823)
Q Consensus 276 ~s~d~~~~~~~I~I~D~~ 293 (823)
++.+ ...+.|+.
T Consensus 154 ~~~~------~f~~idl~ 165 (275)
T PF00780_consen 154 GTSK------GFYLIDLN 165 (275)
T ss_pred EeCC------ceEEEecC
Confidence 8643 45555554
No 395
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.27 E-value=2.1 Score=49.15 Aligned_cols=140 Identities=22% Similarity=0.284 Sum_probs=94.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHHHH
Q 037368 334 ESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNLT 413 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~L~ 413 (823)
.+-|.++-+.++++.|.+++....-|. .....+...|..|=..|+|.+|-+.|+.. | +|-..|..|-..+.-+-.+
T Consensus 795 ~dai~my~k~~kw~da~kla~e~~~~e-~t~~~yiakaedldehgkf~eaeqlyiti-~--~p~~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 795 KDAIDMYGKAGKWEDAFKLAEECHGPE-ATISLYIAKAEDLDEHGKFAEAEQLYITI-G--EPDKAIQMYDKHGLDDDMI 870 (1636)
T ss_pred HHHHHHHhccccHHHHHHHHHHhcCch-hHHHHHHHhHHhHHhhcchhhhhheeEEc-c--CchHHHHHHHhhCcchHHH
Confidence 677888888999999999998865444 34556677789999999999999999864 3 6778888887666655666
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCCh-hhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHhC
Q 037368 414 NYLEKLHEKGFASKDHTTLLLNCYTKLKDV-EKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKAG 487 (823)
Q Consensus 414 ~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~-~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~~ 487 (823)
+..++-|... ....|.. +-.-|..-+|. +.=.+|++. -|...++.+.+.++..++|..+|+..|
T Consensus 871 rlv~k~h~d~-l~dt~~~-f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 871 RLVEKHHGDH-LHDTHKH-FAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred HHHHHhChhh-hhHHHHH-HHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 6555533211 1111111 22233322332 223466644 366788999999999999999998654
No 396
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=92.02 E-value=0.41 Score=31.77 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=24.1
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEE
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~ 161 (823)
|+++++++++.. +++|+.||.|.+|+
T Consensus 15 i~~~~~~~~~~~---~~~~~~d~~~~~~~ 40 (40)
T smart00320 15 VTSVAFSPDGKY---LASASDDGTIKLWD 40 (40)
T ss_pred eeEEEECCCCCE---EEEecCCCeEEEcC
Confidence 999999999888 99999999999984
No 397
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.87 Score=48.78 Aligned_cols=112 Identities=10% Similarity=0.033 Sum_probs=69.9
Q ss_pred eEEEEEecCCC-CcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEec
Q 037368 133 ITSFLVLEEAP-PILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQ 210 (823)
Q Consensus 133 v~~va~~~d~~-~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~ 210 (823)
|..++|+|... . +..++.+.+|.+.+.. .. ....-+....+|++.+|.-|.. +.+|++-.+ .|.+||++
T Consensus 196 IrdlafSp~~~GL---l~~asl~nkiki~dle----t~-~~vssy~a~~~~wSC~wDlde~-h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 196 IRDLAFSPFNEGL---LGLASLGNKIKIMDLE----TS-CVVSSYIAYNQIWSCCWDLDER-HVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred hhhhccCccccce---eeeeccCceEEEEecc----cc-eeeeheeccCCceeeeeccCCc-ceeEEeccCceEEEEEcc
Confidence 99999999876 5 7788889999999863 11 1111123357899999988764 678888665 49999997
Q ss_pred CCCCcceEEcc--CCCcccee------cccCCCeEEEeeCCeEEEEecCCC
Q 037368 211 NQPPKRQFLDN--IGCSTNSV------AMSDRLELIIGRPEAVYFYEVDGR 253 (823)
Q Consensus 211 ~~~~~~~~l~~--~~~~~~~~------~~s~~~~liv~~~~~I~i~~~~g~ 253 (823)
....+...+.. .-+++-.+ ...+.|-++++......+|++.+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s 317 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFS 317 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhcc
Confidence 54323332211 01111111 222455566666666778876543
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=0.31 Score=53.89 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=46.7
Q ss_pred CCCeEEEee-CCCEEEEEecCCeEEEEcCCCeeeE-eEeecccceeEEEEecCCCEEEE
Q 037368 25 SGNITCCSS-GRGKVVIGCDDGAVSLLDRGLKFNF-GFQAHSSSVLFLQQLKQRNFLVT 81 (823)
Q Consensus 25 ~~~is~~~~-~~~~l~~gs~dG~i~~~d~~~~~~~-~~~~H~~~V~~i~~~~~~~~l~s 81 (823)
..+.+|.+. .+|+||+||.+|-|++||+.+...+ .|.|...+|.+|.++.+|++++.
T Consensus 430 k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILA 488 (644)
T ss_pred ccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence 455788776 5689999999999999998665433 46788899999999999998753
No 399
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=91.34 E-value=4.6 Score=47.95 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=101.6
Q ss_pred CCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCC
Q 037368 34 GRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSS 112 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~ 112 (823)
++..++.|+.-..+..+| ++.+..+...--++.|+-|+- .+.++.+|..-|+ |-+=|+...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~---------V~LrD~~s~------- 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGT---------VFLRDPNSF------- 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccce---------EEeecCCcC-------
Confidence 456788888888888888 656665444434445777764 5677888878887 888888743
Q ss_pred CCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC--------eEEEEEcccccccccceeEEecCCCCcce
Q 037368 113 TSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG--------CIYCIKGDIARERITRFKLQVDNQCSVMG 184 (823)
Q Consensus 113 ~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG--------~V~l~~~~~~~~~~~k~~~~~~~~~~It~ 184 (823)
+.++++..|. +.+..+.+. |+. -+++|.... -|++||..+.|...+ +.-+-+| .-
T Consensus 208 ---~~iht~~aHs-----~siSDfDv~--GNl--LitCG~S~R~~~l~~D~FvkVYDLRmmral~P----I~~~~~P-~f 270 (1118)
T KOG1275|consen 208 ---ETIHTFDAHS-----GSISDFDVQ--GNL--LITCGYSMRRYNLAMDPFVKVYDLRMMRALSP----IQFPYGP-QF 270 (1118)
T ss_pred ---ceeeeeeccc-----cceeeeecc--CCe--EEEeecccccccccccchhhhhhhhhhhccCC----cccccCc-hh
Confidence 2456666442 226655554 444 155554322 245565421111000 0001222 45
Q ss_pred EEEeecCCeEEEEEEc-CCeEEEEEecCCCCc-ceE--EccCCCccceecccCCCeEEEeeC--CeEEEEecC
Q 037368 185 LGFRVDGQALQLFAVT-PNSVILFSLQNQPPK-RQF--LDNIGCSTNSVAMSDRLELIIGRP--EAVYFYEVD 251 (823)
Q Consensus 185 l~fs~dg~~~~l~~~t-~~~V~~~d~~~~~~~-~~~--l~~~~~~~~~~~~s~~~~liv~~~--~~I~i~~~~ 251 (823)
+.|.|.=. ..+++++ .+...+-|..+-+.+ ..+ ....+..+....+|++|+.++-++ +.|.+|...
T Consensus 271 lrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 271 LRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred hhhccccc-ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 66766543 3455554 455777774433222 222 233344455667889998766543 689999743
No 400
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=91.26 E-value=4.7 Score=48.12 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=98.0
Q ss_pred HHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHH------HHHHhhchhhHH
Q 037368 338 DMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSY------VIQKFLDAQRIY 410 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~------vI~kFl~~~~~~ 410 (823)
..+...++++.|+...+.. .+++. ....+...|.-++..|+|++|+..|-+.+.. +|.. ....+...++..
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445678888888877662 22221 2344556677778888888888888776543 2221 111223334444
Q ss_pred HHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChh----hHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHH-
Q 037368 411 NLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVE----KLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKK- 485 (823)
Q Consensus 411 ~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~----~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~- 485 (823)
.=..+++........+......|-.+|.++++.+ .+.+-++..+...+. ....-.++...|++++|+....+
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~---~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDV---YNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHccCHHHHHHHHHHH
Confidence 4444444433333222222223444566666643 233333332200010 11122345566777777665553
Q ss_pred hC---C----hHHHH------HHHHHhhcCHHHHHHHHhc---CChHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 037368 486 AG---K----HELYL------KILLEDLGRYDEALQYISS---LDPSQAGVTVKEYGKILIEH-KPMETIDILLRL 544 (823)
Q Consensus 486 ~~---~----~~~~l------~il~~~~~~~~~al~yl~~---l~~~~~~~~i~k~~~~Ll~~-~p~~~~~ll~~~ 544 (823)
.. . +..++ ..+....+++++|++++.+ +++.. ...+...|..++.. ..+++++.+-+.
T Consensus 494 l~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 494 IELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 11 1 11111 1122224788888888875 23322 22334445544433 456677766554
No 401
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.24 E-value=42 Score=40.73 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=121.1
Q ss_pred CCeEEEee--CCCEEEEEecCCeEEEEc-CCCeeeEeEe--ecccceeEEEEecCC---C---EEEEEecCCCCcccccc
Q 037368 26 GNITCCSS--GRGKVVIGCDDGAVSLLD-RGLKFNFGFQ--AHSSSVLFLQQLKQR---N---FLVTVGEDEQVSAQQSA 94 (823)
Q Consensus 26 ~~is~~~~--~~~~l~~gs~dG~i~~~d-~~~~~~~~~~--~H~~~V~~i~~~~~~---~---~l~s~s~D~~~~~~~~~ 94 (823)
.+++|..+ ....+++++.++.+.... ..+. ++.-. -....|.|+.++|-| + +++.+..+..
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~------- 559 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDI------- 559 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecce-------
Confidence 34444333 344677777777776666 3333 22222 234789999998742 2 5565555554
Q ss_pred eeEEEEeCCCCCCCCCCCCCCceEEEEE-eccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccc--cccc
Q 037368 95 VCLKVFDLDKMEPEGTSSTSPDCIGILR-VFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARE--RITR 171 (823)
Q Consensus 95 ~~vkvWdl~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~--~~~k 171 (823)
++.+--+... ++.+.. +.....| -.|-..++-.|..+ +-++++||.+..|-.+...- ...|
T Consensus 560 -~~~l~~~pd~-----------~~~~~~~l~~~~iP-RSIl~~~~e~d~~y---LlvalgdG~l~~fv~d~~tg~lsd~K 623 (1096)
T KOG1897|consen 560 -SMILTFLPDL-----------ILITHEQLSGEIIP-RSILLTTFEGDIHY---LLVALGDGALLYFVLDINTGQLSDRK 623 (1096)
T ss_pred -EEEEEECCCc-----------ceeeeeccCCCccc-hheeeEEeeccceE---EEEEcCCceEEEEEEEcccceEcccc
Confidence 1333322210 111111 1111223 22555566666677 99999999998775442100 0011
Q ss_pred eeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccCCC-ccc-eecccCC---CeEEEeeCCeEE
Q 037368 172 FKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGC-STN-SVAMSDR---LELIIGRPEAVY 246 (823)
Q Consensus 172 ~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~~~-~~~-~~~~s~~---~~liv~~~~~I~ 246 (823)
. ..=+..|++==.|+..++ ..++++++.=..+|.-+++ -++.+-.. .++ -+.|+.+ ..++.+.++++.
T Consensus 624 k--~~lGt~P~~Lr~f~sk~~-t~vfa~sdrP~viY~~n~k----Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~ 696 (1096)
T KOG1897|consen 624 K--VTLGTQPISLRTFSSKSR-TAVFALSDRPTVIYSSNGK----LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALT 696 (1096)
T ss_pred c--cccCCCCcEEEEEeeCCc-eEEEEeCCCCEEEEecCCc----EEEeccchHHhhhhcccccccCCceEEEecCCceE
Confidence 1 112356787778887765 5688787776667765543 12211111 111 1233322 236667778888
Q ss_pred EEecCCCCcc----ccccCCeEEEEeeC-cEEEEE-EecC---------CCCccEEEEEeCCCCEEEE
Q 037368 247 FYEVDGRGPC----WAFEGEKKLLGWFR-GYLLCV-IADQ---------RNSKNIFNVYDLKNRLIAH 299 (823)
Q Consensus 247 i~~~~g~~~~----~~~~g~~~~i~~~~-~ylv~~-s~d~---------~~~~~~I~I~D~~~~~i~~ 299 (823)
+..++.-+.. ..+.+++..|.+.. ..+..+ +... ...-..++++|.++-...+
T Consensus 697 i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 697 IGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 8877632221 12223344455543 222222 2111 1124579999988754433
No 402
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=91.13 E-value=0.46 Score=30.42 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCeEEEeeCCCEEEEEecCCeEEEEc
Q 037368 26 GNITCCSSGRGKVVIGCDDGAVSLLD 51 (823)
Q Consensus 26 ~~is~~~~~~~~l~~gs~dG~i~~~d 51 (823)
..|.|++.++++++.+|+.+.+++|+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 57899999999999999999999984
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.79 E-value=5.2 Score=46.81 Aligned_cols=115 Identities=13% Similarity=0.136 Sum_probs=69.6
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEE--ecCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLV--LEEA 142 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~--~~d~ 142 (823)
...+.+.-++- +.+|.+..+++ .+.|||..... +... ..+....+ |..+.| .||+
T Consensus 30 ~~~~li~gss~-~k~a~V~~~~~--------~LtIWD~~~~~----------lE~~-~~f~~~~~---I~dLDWtst~d~ 86 (631)
T PF12234_consen 30 SNPSLISGSSI-KKIAVVDSSRS--------ELTIWDTRSGV----------LEYE-ESFSEDDP---IRDLDWTSTPDG 86 (631)
T ss_pred CCcceEeeccc-CcEEEEECCCC--------EEEEEEcCCcE----------EEEe-eeecCCCc---eeeceeeecCCC
Confidence 45666666553 45666666665 29999997421 1111 11211223 888877 4666
Q ss_pred CCcceEEEEEeCCeEEEEE---cccccccccceeE-----EecC-CCCcceEEEeecCCeEEEEEEcCCeEEEEEe
Q 037368 143 PPILLIAIGLDNGCIYCIK---GDIARERITRFKL-----QVDN-QCSVMGLGFRVDGQALQLFAVTPNSVILFSL 209 (823)
Q Consensus 143 ~~~~~ia~G~~dG~V~l~~---~~~~~~~~~k~~~-----~~~~-~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~ 209 (823)
+. -+|+|+ .+.|.+|. .+.+. .++.... +... ..||....|.++| .+++++++++.+++-
T Consensus 87 qs--iLaVGf-~~~v~l~~Q~R~dy~~-~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 87 QS--ILAVGF-PHHVLLYTQLRYDYTN-KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGSGNQLFVFDK 155 (631)
T ss_pred CE--EEEEEc-CcEEEEEEccchhhhc-CCcccceeEEEEeecCCCCCccceeEecCC---eEEEEeCCEEEEECC
Confidence 54 278888 77888873 22211 1221111 1222 5799999999998 688889999999974
No 404
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.67 E-value=45 Score=40.09 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=33.1
Q ss_pred hccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhccCCC
Q 037368 708 LKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGE 758 (823)
Q Consensus 708 ~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~ 758 (823)
-|+|-++-+.+++.+.+..|+++.-..-+.++-..-.+|..+...+....+
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 456666777777777777777765544333222244699999998887654
No 405
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.50 E-value=11 Score=40.29 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=84.4
Q ss_pred EeeCCCEEEEEecC------------CeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEe-cCCCCcccccceeE
Q 037368 31 CSSGRGKVVIGCDD------------GAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVG-EDEQVSAQQSAVCL 97 (823)
Q Consensus 31 ~~~~~~~l~~gs~d------------G~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s-~D~~~~~~~~~~~v 97 (823)
.+.+++.+++|+.. |.|+.+++.+..++-+..|-..=+.|+|+|+++.|..+- ..+. |
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~---------i 187 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR---------I 187 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe---------E
Confidence 33455778887766 557777766777766776666678899999998776553 3333 6
Q ss_pred EEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCC-eEEEEEcccccccccceeEEe
Q 037368 98 KVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNG-CIYCIKGDIARERITRFKLQV 176 (823)
Q Consensus 98 kvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG-~V~l~~~~~~~~~~~k~~~~~ 176 (823)
.-|+++... +. .+.+ +....++. .| +..-.++++.+|.. -+++..+| .|..|+.+ +.+...+.
T Consensus 188 ~r~~~d~~~--g~-~~~~---~~~~~~~~-~~-G~PDG~~vDadG~l---w~~a~~~g~~v~~~~pd-----G~l~~~i~ 251 (307)
T COG3386 188 HRYDLDPAT--GP-IGGR---RGFVDFDE-EP-GLPDGMAVDADGNL---WVAAVWGGGRVVRFNPD-----GKLLGEIK 251 (307)
T ss_pred EEEecCccc--Cc-cCCc---ceEEEccC-CC-CCCCceEEeCCCCE---EEecccCCceEEEECCC-----CcEEEEEE
Confidence 666665310 00 0111 11111111 11 22466788888887 65554454 88888753 22333333
Q ss_pred cCCCCcceEEEeecCCeEEEEEEcCC
Q 037368 177 DNQCSVMGLGFRVDGQALQLFAVTPN 202 (823)
Q Consensus 177 ~~~~~It~l~fs~dg~~~~l~~~t~~ 202 (823)
-....+++++|-.... ..||+++..
T Consensus 252 lP~~~~t~~~FgG~~~-~~L~iTs~~ 276 (307)
T COG3386 252 LPVKRPTNPAFGGPDL-NTLYITSAR 276 (307)
T ss_pred CCCCCCccceEeCCCc-CEEEEEecC
Confidence 2236788999965322 367777643
No 406
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.44 E-value=2.5 Score=47.07 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEcccc-------------------------------cccc-------cceeE
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIA-------------------------------RERI-------TRFKL 174 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~-------------------------------~~~~-------~k~~~ 174 (823)
|+.+.|.++... +|+|..+|.|.+|+-.-. ++|. -....
T Consensus 4 v~~vs~a~~t~E---lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 4 VTHVSFAPETLE---LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp EEEEEEETTTTE---EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred EEEEEecCCCce---EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 899999999777 999999999999862100 0000 01112
Q ss_pred Ee-cCCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEE----cc------CCCccceeccc-----CCC--
Q 037368 175 QV-DNQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFL----DN------IGCSTNSVAMS-----DRL-- 235 (823)
Q Consensus 175 ~~-~~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l----~~------~~~~~~~~~~s-----~~~-- 235 (823)
+. ...++|+.++.|.-| +++++..+ .+.+.|+++- ..++ .. .++.+.|+.|+ .|+
T Consensus 81 l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGP---avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGP---AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTT---EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred heeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCC---eEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 22 236899999999877 78888764 5999999763 2222 11 23345566665 244
Q ss_pred --eEEEeeC-CeEEEEec
Q 037368 236 --ELIIGRP-EAVYFYEV 250 (823)
Q Consensus 236 --~liv~~~-~~I~i~~~ 250 (823)
.+++|.+ +.+.+|++
T Consensus 155 Si~L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEEEEETTSEEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEE
Confidence 2556655 57777754
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.13 E-value=10 Score=39.43 Aligned_cols=177 Identities=14% Similarity=0.042 Sum_probs=95.2
Q ss_pred CeEEEEc-CCCeeeEeEeecc-cceeEEEEecCCCEEEEEe--cCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEE
Q 037368 45 GAVSLLD-RGLKFNFGFQAHS-SSVLFLQQLKQRNFLVTVG--EDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGI 120 (823)
Q Consensus 45 G~i~~~d-~~~~~~~~~~~H~-~~V~~i~~~~~~~~l~s~s--~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~ 120 (823)
|.+...+ .....+....+.. ..+...+++++|+.+|.++ +++. .+.++..... +. .
T Consensus 2 G~l~~~~~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~--------~L~~~~~~~~---------~~---~ 61 (253)
T PF10647_consen 2 GQLVRVSGGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGR--------SLYVGPAGGP---------VR---P 61 (253)
T ss_pred CcEEEecCCceeECCCCcCcCCccccceEECCCCCeEEEEEEcCCCC--------EEEEEcCCCc---------ce---e
Confidence 4443333 3334443344443 3789999999999888777 4443 1666654421 11 1
Q ss_pred EEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE-ecC-CCCcceEEEeecCCeEEEEE
Q 037368 121 LRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ-VDN-QCSVMGLGFRVDGQALQLFA 198 (823)
Q Consensus 121 ~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~-~~~-~~~It~l~fs~dg~~~~l~~ 198 (823)
+. .. ..++.-+|++++.. .++...++...++... .+.......+ ... .++|+.+.+|+||.. +.++
T Consensus 62 ~~-~g-----~~l~~PS~d~~g~~---W~v~~~~~~~~~~~~~--~~g~~~~~~v~~~~~~~~I~~l~vSpDG~R-vA~v 129 (253)
T PF10647_consen 62 VL-TG-----GSLTRPSWDPDGWV---WTVDDGSGGVRVVRDS--ASGTGEPVEVDWPGLRGRITALRVSPDGTR-VAVV 129 (253)
T ss_pred ec-cC-----CccccccccCCCCE---EEEEcCCCceEEEEec--CCCcceeEEecccccCCceEEEEECCCCcE-EEEE
Confidence 10 11 12666789999877 7777767777766411 0001111111 111 238999999999963 4444
Q ss_pred Ec---CCeEEEEEec--CCCCc------ceEEccCCCccceecccCCCeEEEeeC---CeEEE-EecCCC
Q 037368 199 VT---PNSVILFSLQ--NQPPK------RQFLDNIGCSTNSVAMSDRLELIIGRP---EAVYF-YEVDGR 253 (823)
Q Consensus 199 ~t---~~~V~~~d~~--~~~~~------~~~l~~~~~~~~~~~~s~~~~liv~~~---~~I~i-~~~~g~ 253 (823)
.. ..+|++--+. ..+.+ .......+..+..+.|.+++.+++... +.+.. ..+.|.
T Consensus 130 ~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 130 VEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred EecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 42 3456665543 22211 111122345567789999999887543 23333 555543
No 408
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.09 E-value=13 Score=40.24 Aligned_cols=154 Identities=13% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCeEEEeeCCCEEEEEecCCeEEEEc-CCCe-eeE-eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe
Q 037368 25 SGNITCCSSGRGKVVIGCDDGAVSLLD-RGLK-FNF-GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD 101 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~-~~~-~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd 101 (823)
...|+|++.-.++|+.|. .+.|.+|+ ...+ ..+ .+-.....|+++... +++++.+..-.. |.++.
T Consensus 88 ~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~s---------v~~~~ 155 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKS---------VSLLR 155 (321)
T ss_dssp SS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSS---------EEEEE
T ss_pred cCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccC---------EEEEE
Confidence 456888888888866664 68899998 3333 322 122122367777764 567765544443 66664
Q ss_pred CCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEccc--ccc-ccc-ceeEE--
Q 037368 102 LDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDI--ARE-RIT-RFKLQ-- 175 (823)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~--~~~-~~~-k~~~~-- 175 (823)
.+.. +..+..+.- + ..| ..++++++-+|++. +++|-.+|+|.+++.+- ..+ .+. +....
T Consensus 156 ~~~~---------~~~l~~va~-d-~~~-~~v~~~~~l~d~~~---~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~ 220 (321)
T PF03178_consen 156 YDEE---------NNKLILVAR-D-YQP-RWVTAAEFLVDEDT---IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS 220 (321)
T ss_dssp EETT---------TE-EEEEEE-E-SS--BEEEEEEEE-SSSE---EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE
T ss_pred EEcc---------CCEEEEEEe-c-CCC-ccEEEEEEecCCcE---EEEEcCCCeEEEEEECCCCcccccccccceeEEE
Confidence 4421 111212211 1 112 34888888866667 99999999999986431 011 111 32222
Q ss_pred ecCCCCcceE---EEeec--CC-----eEEEEEEcCCeEE
Q 037368 176 VDNQCSVMGL---GFRVD--GQ-----ALQLFAVTPNSVI 205 (823)
Q Consensus 176 ~~~~~~It~l---~fs~d--g~-----~~~l~~~t~~~V~ 205 (823)
+...+.|+++ ++.+. +. ..+++++.+++|.
T Consensus 221 f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 221 FHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp EE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EE
T ss_pred EECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEE
Confidence 2235678887 54442 21 1367777777776
No 409
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=89.99 E-value=40 Score=38.73 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 363 TAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 363 ~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
...+.+.-+.-++.+|+|+.|...|-.++
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al 226 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQAL 226 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555667888999999999999988874
No 410
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.96 E-value=24 Score=35.81 Aligned_cols=171 Identities=12% Similarity=0.121 Sum_probs=81.9
Q ss_pred EEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceE-EccCCCcc
Q 037368 148 IAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQF-LDNIGCST 226 (823)
Q Consensus 148 ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~-l~~~~~~~ 226 (823)
+.+++.+|.++.|+.. . .+..--.+.++++...-...++ .+++.+.++.++.+|..+.. ..-. ........
T Consensus 39 v~~~~~~~~l~~~d~~----t-G~~~W~~~~~~~~~~~~~~~~~--~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 39 VYVASGDGNLYALDAK----T-GKVLWRFDLPGPISGAPVVDGG--RVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPA 110 (238)
T ss_dssp EEEEETTSEEEEEETT----T-SEEEEEEECSSCGGSGEEEETT--EEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTC
T ss_pred EEEEcCCCEEEEEECC----C-CCEEEEeeccccccceeeeccc--ccccccceeeeEecccCCcc-eeeeecccccccc
Confidence 6666789999999853 1 2222112223443333233333 33333445678999965432 2222 11111111
Q ss_pred c---eeccc-CCCeEEEee-CCeEEEEecCCCCccccc--cCCe------------EEEEeeCcEEEEEEecCCCCccEE
Q 037368 227 N---SVAMS-DRLELIIGR-PEAVYFYEVDGRGPCWAF--EGEK------------KLLGWFRGYLLCVIADQRNSKNIF 287 (823)
Q Consensus 227 ~---~~~~s-~~~~liv~~-~~~I~i~~~~g~~~~~~~--~g~~------------~~i~~~~~ylv~~s~d~~~~~~~I 287 (823)
. ..... .++.++++. ++.|+.++++.....+.. .... ......+..+.+...+ ...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----g~~~ 186 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD----GRVV 186 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT----SSEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC----CeEE
Confidence 1 11111 145566666 678988887622111211 1111 1222234444444432 1246
Q ss_pred EEEeCCCCEEEEeccccceeEEEeecC-cEEEEEcCCeEEEEeec
Q 037368 288 NVYDLKNRLIAHSLVVKEVSHMLCEWG-NIILVMTDKSVLCIGEK 331 (823)
Q Consensus 288 ~I~D~~~~~i~~~~~i~~v~~v~~~~~-~~~vvs~~~~v~~l~~~ 331 (823)
.+ |..++...++..+..........+ .+|+.+.++.++.+..+
T Consensus 187 ~~-d~~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 187 AV-DLATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EE-ETTTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETT
T ss_pred EE-ECCCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECC
Confidence 66 999887667555444443233334 45555667888887643
No 411
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.75 E-value=12 Score=44.24 Aligned_cols=177 Identities=15% Similarity=0.143 Sum_probs=90.5
Q ss_pred cCCeEEEEcCC-CeeeEeEeecccceeEEEEecCCCEEEEEe------cCCCCcccccceeEEEEeCCCCCCCCCCCCCC
Q 037368 43 DDGAVSLLDRG-LKFNFGFQAHSSSVLFLQQLKQRNFLVTVG------EDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSP 115 (823)
Q Consensus 43 ~dG~i~~~d~~-~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s------~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~ 115 (823)
.+|.+...+.+ -..+.-.-+....+....++|+|+.++... .|.. + .|.+++... .+
T Consensus 327 ~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~---s----~Lwv~~~gg---------~~ 390 (591)
T PRK13616 327 VDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPA---S----SLWVGPLGG---------VA 390 (591)
T ss_pred ECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcc---e----EEEEEeCCC---------cc
Confidence 37878777632 223222223334688999999999887655 2332 0 144445431 11
Q ss_pred ceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEE-EEEcccccccccceeEE-e-------cCCCCcceEE
Q 037368 116 DCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIY-CIKGDIARERITRFKLQ-V-------DNQCSVMGLG 186 (823)
Q Consensus 116 ~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~-l~~~~~~~~~~~k~~~~-~-------~~~~~It~l~ 186 (823)
+.+. .. ...++-.|+|||.. +++......+. +.+.+ ......++ . ...++|+++.
T Consensus 391 ---~~lt-~g-----~~~t~PsWspDG~~---lw~v~dg~~~~~v~~~~----~~gql~~~~vd~ge~~~~~~g~Issl~ 454 (591)
T PRK13616 391 ---VQVL-EG-----HSLTRPSWSLDADA---VWVVVDGNTVVRVIRDP----ATGQLARTPVDASAVASRVPGPISELQ 454 (591)
T ss_pred ---eeee-cC-----CCCCCceECCCCCc---eEEEecCcceEEEeccC----CCceEEEEeccCchhhhccCCCcCeEE
Confidence 1111 11 11667789999887 77765332332 22210 00011000 0 1246799999
Q ss_pred EeecCCeEEEEEEcCCeEEEEEec--CCCC--c--ceEE-ccCCCccceecccCCCeEEEeeCC---eEEEEecCCC
Q 037368 187 FRVDGQALQLFAVTPNSVILFSLQ--NQPP--K--RQFL-DNIGCSTNSVAMSDRLELIIGRPE---AVYFYEVDGR 253 (823)
Q Consensus 187 fs~dg~~~~l~~~t~~~V~~~d~~--~~~~--~--~~~l-~~~~~~~~~~~~s~~~~liv~~~~---~I~i~~~~g~ 253 (823)
||+||+ .++++. .++|++--+. ..+. . ...+ ...+..+..+.|.+++.++++..+ .++..+++|.
T Consensus 455 wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 455 LSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred ECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 999996 344444 5666663321 1221 0 1112 222333456789899988876542 3544555554
No 412
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.48 E-value=27 Score=36.18 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=62.1
Q ss_pred EeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEe
Q 037368 60 FQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVL 139 (823)
Q Consensus 60 ~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~ 139 (823)
+.+-...|+.|.+.|+.+.|+++.+... . |--.+++ ...++.+...+. +-.-.|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~----~----i~els~~-----------G~vlr~i~l~g~----~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPG----E----IYELSLD-----------GKVLRRIPLDGF----GDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTT----E----EEEEETT-------------EEEEEE-SS-----SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCC----E----EEEEcCC-----------CCEEEEEeCCCC----CCceeEEEE
Confidence 3344457999999999888888876643 1 4334443 136777764321 226788887
Q ss_pred cCCCCcceEEEEE-eCCeEEEEEcccc-cccc-cceeEE---ec--CCCCcceEEEeecCCeEEEEEEcCCe-EEEEEec
Q 037368 140 EEAPPILLIAIGL-DNGCIYCIKGDIA-RERI-TRFKLQ---VD--NQCSVMGLGFRVDGQALQLFAVTPNS-VILFSLQ 210 (823)
Q Consensus 140 ~d~~~~~~ia~G~-~dG~V~l~~~~~~-~~~~-~k~~~~---~~--~~~~It~l~fs~dg~~~~l~~~t~~~-V~~~d~~ 210 (823)
.++. +|+.. .++.+.+++.+-. +... ...+.+ .. ++..+-||+|.+.++ .++++.+.. ..+|.+.
T Consensus 74 g~~~----~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 74 GNGR----YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFVAKERKPKRLYEVN 147 (248)
T ss_dssp STTE----EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEEEEESSSEEEEEEE
T ss_pred CCCE----EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEEEeCCCChhhEEEc
Confidence 7664 45544 3788888765310 0000 011111 11 244588999998764 455565432 4455544
No 413
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.37 E-value=29 Score=35.95 Aligned_cols=198 Identities=11% Similarity=0.040 Sum_probs=96.9
Q ss_pred CCCeEEEeeCC--C-EEEEEecCCeEEEEcCCCeeeEeEeecc-cceeEEEEecCCCEEEEEecCCCCcccccceeEEEE
Q 037368 25 SGNITCCSSGR--G-KVVIGCDDGAVSLLDRGLKFNFGFQAHS-SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVF 100 (823)
Q Consensus 25 ~~~is~~~~~~--~-~l~~gs~dG~i~~~d~~~~~~~~~~~H~-~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvW 100 (823)
..++|.++..+ + .+++....+.|..++.+|++++++.-.. +-.-.|.+..++.++++--.+++ +.+.
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~---------L~~~ 91 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR---------LYIF 91 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE---------EEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc---------EEEE
Confidence 33589999853 4 4578889999999998899888776433 45777777766666654433565 7777
Q ss_pred eCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEe----
Q 037368 101 DLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQV---- 176 (823)
Q Consensus 101 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~---- 176 (823)
++..... ..... -...+.+.-....+..+-.+|++|.... +.++-...-..+|..+.... ........
T Consensus 92 ~~~~~~~---~~~~~-~~~~~~l~~~~~~N~G~EGla~D~~~~~---L~v~kE~~P~~l~~~~~~~~-~~~~~~~~~~~~ 163 (248)
T PF06977_consen 92 TIDDDTT---SLDRA-DVQKISLGFPNKGNKGFEGLAYDPKTNR---LFVAKERKPKRLYEVNGFPG-GFDLFVSDDQDL 163 (248)
T ss_dssp EE----T---T--EE-EEEEEE---S---SS--EEEEEETTTTE---EEEEEESSSEEEEEEESTT--SS--EEEE-HHH
T ss_pred EEecccc---ccchh-hceEEecccccCCCcceEEEEEcCCCCE---EEEEeCCCChhhEEEccccC-ccceeecccccc
Confidence 7743210 00000 1122222110001133889999998777 77777666666665431110 11111110
Q ss_pred c----CCCCcceEEEeecCCeEEEEEEcCC-eEEEEEecCCCCcceEE--cc--CC-----CccceecccCCCeEEEeeC
Q 037368 177 D----NQCSVMGLGFRVDGQALQLFAVTPN-SVILFSLQNQPPKRQFL--DN--IG-----CSTNSVAMSDRLELIIGRP 242 (823)
Q Consensus 177 ~----~~~~It~l~fs~dg~~~~l~~~t~~-~V~~~d~~~~~~~~~~l--~~--~~-----~~~~~~~~s~~~~liv~~~ 242 (823)
. .-..+-+++|.|... .+++.+..+ .+..+|..++ +...+ .. +| ..+.-++|+++|.+.+++.
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp H-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccceeccccceEEcCCCC-eEEEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 0 012366888887643 334434333 4777776554 33333 21 11 2356789999998777664
No 414
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.27 E-value=35 Score=36.79 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=39.0
Q ss_pred EEEEEe---------C-CeEEEEEcccccccccceeEEe--cCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCC
Q 037368 148 IAIGLD---------N-GCIYCIKGDIARERITRFKLQV--DNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQP 213 (823)
Q Consensus 148 ia~G~~---------d-G~V~l~~~~~~~~~~~k~~~~~--~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~ 213 (823)
+|+|++ . |.|.+++..-..+...+.+.+. +.++||++|.-- .| .++++..+.|.+|++..+.
T Consensus 45 ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~---~lv~~~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 45 IVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG---RLVVAVGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT---EEEEEETTEEEEEEEETTS
T ss_pred EEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC---EEEEeecCEEEEEEccCcc
Confidence 888876 2 8899997641100112444443 348999998754 33 3777778899999998654
No 415
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=87.92 E-value=0.76 Score=36.37 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=41.8
Q ss_pred HHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 337 LDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
-..+++.++|+.|++..+.. ...+. -..++..+|.-++.+|+|++|+..|-+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35688999999999988872 22222 46778888999999999999999887764
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=87.83 E-value=12 Score=43.83 Aligned_cols=108 Identities=12% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCEEE-EEecCCeEEEEc-CCCeee--EeEeecccceeEEEEe--cCCCEEEEEecCCCCcccccceeEEEEeCCCCCCC
Q 037368 35 RGKVV-IGCDDGAVSLLD-RGLKFN--FGFQAHSSSVLFLQQL--KQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPE 108 (823)
Q Consensus 35 ~~~l~-~gs~dG~i~~~d-~~~~~~--~~~~~H~~~V~~i~~~--~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~ 108 (823)
-++++ +-+...++.||| +.+.+. .+| ...+.|.++.|. |+|+.++++|-.+. |.++.--+.+.-
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~---------v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHH---------VLLYTQLRYDYT 109 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcE---------EEEEEccchhhh
Confidence 34454 344455789999 444432 233 336789999986 58999999999987 888865443321
Q ss_pred CCCCCCC--ceEEEEEeccCC-CCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 109 GTSSTSP--DCIGILRVFTSQ-FPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 109 ~~~~~~~--~~~~~~~~~~~~-~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
+..| ..++.+.+.+.+ +| |....|.+||. +++|+ +..+.+++..
T Consensus 110 ---~~~p~w~~i~~i~i~~~T~h~---Igds~Wl~~G~----LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 110 ---NKGPSWAPIRKIDISSHTPHP---IGDSIWLKDGT----LVVGS-GNQLFVFDKW 156 (631)
T ss_pred ---cCCcccceeEEEEeecCCCCC---ccceeEecCCe----EEEEe-CCEEEEECCC
Confidence 1122 235666555433 56 99999999984 56666 5577777654
No 417
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=87.78 E-value=33 Score=41.28 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=26.1
Q ss_pred HHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q 037368 338 DMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILT 390 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~t 390 (823)
..+.+.++++.|+...++. .+.+. ....+...|.-+...|++++|+..|.+.
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4445566666666655541 11111 1223334455566666666666665543
No 418
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.97 E-value=15 Score=35.50 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCCCCCCCCCC-hhhHHHHHHhcCCchhH----HHHHHHhc-cHHHHHHHHHhcCChhHHHHHHHHhC
Q 037368 664 EKGLRLLKTAWPSELEHPLYD-VDLAIILCEMNAFKEGL----LYLYEKLK-LYKEVIACYTQAHDHEGLIACCKRLG 735 (823)
Q Consensus 664 ~kll~~L~~~~~~~~~~~~Yd-~~~aL~lc~~~~~~~~~----v~L~~k~g-~~~~al~~~~~~~d~~~~i~~~~~~~ 735 (823)
..|..||+. ..-=| ..-|..+....+..+.. +-++.|+| .|++.++..+..|++-.|+.|+++++
T Consensus 46 ~~L~qllq~-------~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 46 SQLHQLLQY-------HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred HHHHHHHhh-------cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 566666665 11111 44566666555544443 33788899 88888889999999999999998864
No 419
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.97 E-value=3.2 Score=43.94 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred HHHHHHhhcCHHHHHHHHhcCCh--HHHHHHHHHHHHHHHhc-CCHHHHHH
Q 037368 493 LKILLEDLGRYDEALQYISSLDP--SQAGVTVKEYGKILIEH-KPMETIDI 540 (823)
Q Consensus 493 l~il~~~~~~~~~al~yl~~l~~--~~~~~~i~k~~~~Ll~~-~p~~~~~l 540 (823)
+.......|++++|+.++.+.-. ++....+..|+..|... .++++.++
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred HHHHhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33333345888888888887422 23345666777655544 34444443
No 420
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=86.80 E-value=18 Score=40.60 Aligned_cols=202 Identities=12% Similarity=0.040 Sum_probs=100.5
Q ss_pred HHHHHHHhccHHHHHHHHHhc--CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC--CcChHHHH-------HHhh
Q 037368 336 KLDMLFKKNLYTVAINLVQSQ--QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG--HLEPSYVI-------QKFL 404 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~--~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~--~~eps~vI-------~kFl 404 (823)
..+++++.++|+.|+..++.- ..|.+ ..+.+..+.-+...|+|++|...+.+... ..+|.... ...+
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~--~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRH--KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 367788899999999888762 22322 36788888889999999988887766543 23443321 1111
Q ss_pred c----hhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChh----hHHHhhcCCCCCCccc-CCHHHHHHHHHhcCC
Q 037368 405 D----AQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVE----KLNMFIKGEDGVGEHK-FDVETAIRVCRAANY 475 (823)
Q Consensus 405 ~----~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~----~l~~fi~~~~~~~~~~-~d~~~ai~vl~~~g~ 475 (823)
+ .+....|..+...+......+..-...+...+...++.+ .+.+.++..+...... ..+..+.. + ..+.
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l-~~~~ 314 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-L-KPED 314 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-c-CCCC
Confidence 1 111234444444432211122333333444566666643 4555555432000000 01111111 1 1234
Q ss_pred HHHHHHHHH----HhCChH--HH---H-HHHHHhhcCHHHHHHHHhc---CC-hHHHHHHHHHHHHHHHhc-CCHHHHHH
Q 037368 476 HEHAMYVAK----KAGKHE--LY---L-KILLEDLGRYDEALQYISS---LD-PSQAGVTVKEYGKILIEH-KPMETIDI 540 (823)
Q Consensus 476 ~~~a~~la~----~~~~~~--~~---l-~il~~~~~~~~~al~yl~~---l~-~~~~~~~i~k~~~~Ll~~-~p~~~~~l 540 (823)
.+.++.+.+ .+++.. .+ + .+++ ..++|++|.+|+++ +. .++.. .....|..+... .++++.++
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHH
Confidence 444444443 233333 22 2 3333 44999999999993 22 12222 233555544433 45666666
Q ss_pred HHH
Q 037368 541 LLR 543 (823)
Q Consensus 541 l~~ 543 (823)
+.+
T Consensus 393 ~~~ 395 (409)
T TIGR00540 393 RQD 395 (409)
T ss_pred HHH
Confidence 554
No 421
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.70 E-value=34 Score=39.18 Aligned_cols=127 Identities=11% Similarity=0.044 Sum_probs=70.1
Q ss_pred ceeEEEEecC----CCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecC
Q 037368 66 SVLFLQQLKQ----RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEE 141 (823)
Q Consensus 66 ~V~~i~~~~~----~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d 141 (823)
.|..++|.|- -.-|..+.-... |.||.+-.... ..+...+-++..+.. .+| -=...+.|||.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkh---------VtVWqL~~s~~---e~~K~l~sQtcEi~e-~~p-vLpQGCVWHPk 123 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKH---------VTVWQLCPSTT---ERNKLLMSQTCEIRE-PFP-VLPQGCVWHPK 123 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccce---------EEEEEeccCcc---ccccceeeeeeeccC-Ccc-cCCCcccccCC
Confidence 5777888873 223555554443 99999873211 112222333333221 333 11355789998
Q ss_pred CCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEecCC
Q 037368 142 APPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQ 212 (823)
Q Consensus 142 ~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~ 212 (823)
... +++=+....-+++... -.+.+.+.=....|-|.+-.|..||++-++++++.=.-++||-..+
T Consensus 124 ~~i---L~VLT~~dvSV~~sV~---~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 124 KAI---LTVLTARDVSVLPSVH---CDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred Cce---EEEEecCceeEeeeee---eCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 777 7665544433444331 1223333323557899999999999644444444445788986554
No 422
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.21 E-value=43 Score=34.37 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCeEEEe-eCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeC
Q 037368 25 SGNITCCS-SGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDL 102 (823)
Q Consensus 25 ~~~is~~~-~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl 102 (823)
+..|.|-+ .-++++++|...|.+++.+ ++|.....|..-..-=.+...++++..+-.+|.|++ ...-|.
T Consensus 52 g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~---------~yalD~ 122 (354)
T KOG4649|consen 52 GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGN---------FYALDP 122 (354)
T ss_pred CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCc---------EEEecc
Confidence 45563333 3567899999999999999 888777777765432233445678999999999998 766666
Q ss_pred CC
Q 037368 103 DK 104 (823)
Q Consensus 103 ~~ 104 (823)
.+
T Consensus 123 ~~ 124 (354)
T KOG4649|consen 123 KT 124 (354)
T ss_pred cc
Confidence 53
No 423
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=86.10 E-value=25 Score=34.82 Aligned_cols=55 Identities=7% Similarity=-0.029 Sum_probs=39.9
Q ss_pred HHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC
Q 037368 337 LDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG 392 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~ 392 (823)
-..+...++|+.|++..+.. ...+. ....+...|..++..|++++|...|.+.+.
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566789999999988752 11111 234556678889999999999999988754
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.98 E-value=65 Score=36.17 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=59.7
Q ss_pred CEEEEEecCCeEEEEcCCCe---eeEe-Eee-cccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRGLK---FNFG-FQA-HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~~~---~~~~-~~~-H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
++|++||.+|.++||++..+ .... +.. -..+|.+|..-+ +++++++.. -.-+.+..+.||.+...+.. .
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~----F~s~~~~~~-LaVLhP~kl~vY~v~~~~g~-~ 111 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGK----FVSGSEDLQ-LAVLHPRKLSVYSVSLVDGT-V 111 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEecc----ccCCCCcce-EEEecCCEEEEEEEEecCCC-c
Confidence 58999999999999995432 1111 222 347899998732 222222211 00001112777777432210 0
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCc--ceEEEEEeCCeEEEEEcc
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPI--LLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~--~~ia~G~~dG~V~l~~~~ 163 (823)
..++.--+..+.-|.-++. ..++++-|=|... -.|++=+.||.+.+|+.+
T Consensus 112 ~~g~~~~L~~~yeh~l~~~---a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe 163 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRT---AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE 163 (418)
T ss_pred ccCcEEEEEEEEEEecccc---eeEEEEEECCCCCCceEEEEEecCceEEEEeCC
Confidence 1111111222222221222 4555554433221 128888999999999875
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.83 E-value=48 Score=36.91 Aligned_cols=160 Identities=11% Similarity=0.062 Sum_probs=72.3
Q ss_pred EEEecC----CeEEEEcC-CCeeeEeEeeccc---ceeEEEEecCCCEEEEEecCCC-----Ccccc------cceeEEE
Q 037368 39 VIGCDD----GAVSLLDR-GLKFNFGFQAHSS---SVLFLQQLKQRNFLVTVGEDEQ-----VSAQQ------SAVCLKV 99 (823)
Q Consensus 39 ~~gs~d----G~i~~~d~-~~~~~~~~~~H~~---~V~~i~~~~~~~~l~s~s~D~~-----~~~~~------~~~~vkv 99 (823)
+.|+.+ |-+.++|. ++++...|....+ --...-+.|..+.++|.+--.- |.+|- +...+.|
T Consensus 147 ~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v 226 (461)
T PF05694_consen 147 ALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV 226 (461)
T ss_dssp EEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred eccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence 445544 46889994 4888888876433 3455777899999998753210 01110 3445999
Q ss_pred EeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec--
Q 037368 100 FDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-- 177 (823)
Q Consensus 100 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-- 177 (823)
||+.+. +.++++.+.... .-+.-|.|..+-...-.++..-..++|-+|..+ .+..+..+.+.+
T Consensus 227 WD~~~r----------~~~Q~idLg~~g---~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~--~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 227 WDWSTR----------KLLQTIDLGEEG---QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD--DDGEWAAEKVIDIP 291 (461)
T ss_dssp EETTTT----------EEEEEEES-TTE---EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---ETTEEEEEEEEEE-
T ss_pred EECCCC----------cEeeEEecCCCC---CceEEEEecCCCCccceEEEEeccceEEEEEEc--CCCCeeeeEEEECC
Confidence 999853 357777654211 114556664443221123322235667666421 011122211111
Q ss_pred -----C-------------CCCcceEEEeecCCeEEEEEEc--CCeEEEEEecCCCCc
Q 037368 178 -----N-------------QCSVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQPPK 215 (823)
Q Consensus 178 -----~-------------~~~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~~~ 215 (823)
+ ..-||.|..|.|+ ..|++++ .+.|+-||++.-..+
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD--rfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDD--RFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CcccCcccccccccccccCCCceEeEEEccCC--CEEEEEcccCCcEEEEecCCCCCC
Confidence 0 2347899999998 5788886 467999999864333
No 426
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=84.68 E-value=25 Score=41.96 Aligned_cols=119 Identities=15% Similarity=0.243 Sum_probs=73.4
Q ss_pred CCCcceEEEeecCCeEEEEEEcCCeEEEEEecCCCCcceEEccC---------CCccceecccC-CCeEEEeeCCeEEEE
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNI---------GCSTNSVAMSD-RLELIIGRPEAVYFY 248 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l~~~---------~~~~~~~~~s~-~~~liv~~~~~I~i~ 248 (823)
...+.++.|-.. .|++++.++..+.+++.-. ....|+.+ ...+..+++-| .|.|+.+-++--.+-
T Consensus 1008 ~~E~~sv~Flk~----KlcIgC~kgFeIvsle~l~-~esLL~paD~s~~~~~~ken~kpiai~rv~~eFLLCys~faFfV 1082 (1175)
T COG5422 1008 PSEPLSVHFLKN----KLCIGCKKGFEIVSLENLR-TESLLNPADTSPLFFEKKENTKPIAIFRVSGEFLLCYSEFAFFV 1082 (1175)
T ss_pred cCceeeeeeecc----ceEEeecCCceEeechhhh-hHhhcCcccccHHHHhhcccCceEEEEeeCCcEEEEecceeEEE
Confidence 455778888763 4888888887777775421 11111111 11223334333 557777766644444
Q ss_pred ecCCC----CccccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeE
Q 037368 249 EVDGR----GPCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSH 308 (823)
Q Consensus 249 ~~~g~----~~~~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~ 308 (823)
+-.|. ..++.|+|.+..++...+|+++.-+ .-|.|.+++++.+.+.---.+++.
T Consensus 1083 N~~Gwrkrts~i~~Weg~Pq~FalsypYIlaf~~------~fIeIr~ieTgeLI~~ilg~~IRl 1140 (1175)
T COG5422 1083 NDQGWRKRTSWIFHWEGEPQEFALSYPYILAFEP------NFIEIRHIETGELIRCILGHNIRL 1140 (1175)
T ss_pred cCcCceecccEEEEEcCccceeeeecceEEEecC------ceEEEEecccceeeeeeccCceEE
Confidence 44432 1246899999999988999999865 489999999988766443333443
No 427
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=84.38 E-value=27 Score=42.22 Aligned_cols=87 Identities=14% Similarity=0.270 Sum_probs=56.3
Q ss_pred HHHHHHHHhccHHHHHHHHHhc---CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHH------hhc
Q 037368 335 SKLDMLFKKNLYTVAINLVQSQ---QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQK------FLD 405 (823)
Q Consensus 335 ~~i~~L~~~~~f~~Al~la~~~---~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~k------Fl~ 405 (823)
..-..++-+++|+.++.+|... ........+=+-+.|-....+|+|+.|..+|.++.+.-+...|... ++.
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 3346777899999999999863 1122333344456688888999999999999999776543333222 233
Q ss_pred hhhHHHHHHHHHHHHH
Q 037368 406 AQRIYNLTNYLEKLHE 421 (823)
Q Consensus 406 ~~~~~~L~~YL~~l~~ 421 (823)
.+.++.=...++.++.
T Consensus 355 ~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 355 RGDLEESKFCFEKVLK 370 (1018)
T ss_pred hchHHHHHHHHHHHHH
Confidence 3445555555555554
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=84.27 E-value=2.5 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=27.7
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
..|.+++++|..+++|.++.||. |-|+.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~---------v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGE---------VLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCe---------EEEEECC
Confidence 57999999999999999999998 9999885
No 429
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.17 E-value=66 Score=34.75 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHHHH
Q 037368 334 ESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNLT 413 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~L~ 413 (823)
.+.-..-.+.|+.++|..|......+. .+| --|+.=|+++.|....+++ -+|.-|..-.+...+...+.
T Consensus 4 a~IA~~A~~~GR~~LA~~LL~~Ep~~~---~qV-----plLL~m~e~e~AL~kAi~S---gD~DLi~~vLl~L~~~l~~s 72 (319)
T PF04840_consen 4 AEIARKAYEEGRPKLATKLLELEPRAS---KQV-----PLLLKMGEDELALNKAIES---GDTDLIYLVLLHLKRKLSLS 72 (319)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCChH---HHH-----HHHhcCCchHHHHHHHHHc---CCccHHHHHHHHHHHhCCHH
Confidence 344455667899999999998754332 233 3366678899999887775 34444444444444444566
Q ss_pred HHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCC
Q 037368 414 NYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGED 454 (823)
Q Consensus 414 ~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~ 454 (823)
.|...++....+. . |+.-|++..+.+.|..|....+
T Consensus 73 ~f~~il~~~p~a~----~-l~~~~~r~~~~~~L~~~y~q~d 108 (319)
T PF04840_consen 73 QFFKILNQNPVAS----N-LYKKYCREQDRELLKDFYYQED 108 (319)
T ss_pred HHHHHHHhCcchH----H-HHHHHHHhccHHHHHHHHHhcc
Confidence 7777766544331 2 3445677667777888876543
No 430
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.98 E-value=83 Score=37.22 Aligned_cols=136 Identities=12% Similarity=0.100 Sum_probs=70.8
Q ss_pred eEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEecc
Q 037368 46 AVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFT 125 (823)
Q Consensus 46 ~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~ 125 (823)
.|.+++..+....-..+ ...+.=.|+|+|+.|.++++... . +++.+-.. .++ +..+.+..
T Consensus 380 ~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~----~----~~v~~~~~---------~gq-l~~~~vd~ 439 (591)
T PRK13616 380 SLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNT----V----VRVIRDPA---------TGQ-LARTPVDA 439 (591)
T ss_pred EEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcc----e----EEEeccCC---------Cce-EEEEeccC
Confidence 45555543333211222 24888999999999998875432 1 44433221 011 11111110
Q ss_pred ---C-CCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeE-----EecC-CCCcceEEEeecCCeEE
Q 037368 126 ---S-QFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKL-----QVDN-QCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 126 ---~-~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~-----~~~~-~~~It~l~fs~dg~~~~ 195 (823)
. ..+ ..|++++|||||.. +|.-. +|.|.+-. +.+..+...++ +... .+.++++.|..++ .
T Consensus 440 ge~~~~~~-g~Issl~wSpDG~R---iA~i~-~g~v~Va~--Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~--~- 509 (591)
T PRK13616 440 SAVASRVP-GPISELQLSRDGVR---AAMII-GGKVYLAV--VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD--S- 509 (591)
T ss_pred chhhhccC-CCcCeEEECCCCCE---EEEEE-CCEEEEEE--EEeCCCCceeecccEEeecccCCccccceEecCC--E-
Confidence 0 011 33999999999999 88766 67777621 11211222222 2222 3457899999987 4
Q ss_pred EEEEcCC-e--EEEEEecC
Q 037368 196 LFAVTPN-S--VILFSLQN 211 (823)
Q Consensus 196 l~~~t~~-~--V~~~d~~~ 211 (823)
|++++.+ . |+..++++
T Consensus 510 L~V~~~~~~~~v~~v~vDG 528 (591)
T PRK13616 510 LVVGRSDPEHPVWYVNLDG 528 (591)
T ss_pred EEEEecCCCCceEEEecCC
Confidence 4444432 2 55555554
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.53 E-value=7 Score=39.73 Aligned_cols=61 Identities=8% Similarity=0.038 Sum_probs=42.3
Q ss_pred CcCCCCeEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEee----------------cccceeEEEEecCCCEEEEEec
Q 037368 22 EEVSGNITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQA----------------HSSSVLFLQQLKQRNFLVTVGE 84 (823)
Q Consensus 22 ~~~~~~is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~----------------H~~~V~~i~~~~~~~~l~s~s~ 84 (823)
+..+.++..+.+.+.++..-|.+|.+++|| .+++.+ +++ ....|..+.+.++|.-+++.+.
T Consensus 9 i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~--~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 9 IVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV--LPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred EecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec--cCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 344567788888899999999999999999 666643 221 2345666666666666666654
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.38 E-value=21 Score=40.00 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=81.3
Q ss_pred EEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEecC--------CCEEEEEecCCCCcccccceeEEEEeCCCCCCCC
Q 037368 39 VIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLKQ--------RNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEG 109 (823)
Q Consensus 39 ~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~~--------~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~ 109 (823)
..|.....++-.| .-|+++..|+-|..-| +.+.|. .+.|+-.|+-+ | +.++..-
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~s----------v--FrIDPR~--- 546 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYS----------V--FRIDPRA--- 546 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccc----------e--EEecccc---
Confidence 3455556666777 5688888999887553 344442 34455555544 2 3333211
Q ss_pred CCCCCCceEEEEEeccCCCCC-CceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec-CCCCcceEEE
Q 037368 110 TSSTSPDCIGILRVFTSQFPE-AKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-NQCSVMGLGF 187 (823)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~p~-~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-~~~~It~l~f 187 (823)
.|+. +.... ..++.. ...+|.+-..+| + ||+|+..|.|+||+. -+.+.++... ....|..|..
T Consensus 547 --~gNK--i~v~e--sKdY~tKn~Fss~~tTesG-y---Ia~as~kGDirLyDR-----ig~rAKtalP~lG~aIk~idv 611 (776)
T COG5167 547 --RGNK--IKVVE--SKDYKTKNKFSSGMTTESG-Y---IAAASRKGDIRLYDR-----IGKRAKTALPGLGDAIKHIDV 611 (776)
T ss_pred --cCCc--eeeee--ehhccccccccccccccCc-e---EEEecCCCceeeehh-----hcchhhhcCcccccceeeeEe
Confidence 1111 11111 111110 114444444443 7 999999999999973 1223333333 3678999999
Q ss_pred eecCCeEEEEEEcCCeEEEEEecCC
Q 037368 188 RVDGQALQLFAVTPNSVILFSLQNQ 212 (823)
Q Consensus 188 s~dg~~~~l~~~t~~~V~~~d~~~~ 212 (823)
+.+|+ .+.+++.+-+.+-|+..+
T Consensus 612 ta~Gk--~ilaTCk~yllL~d~~ik 634 (776)
T COG5167 612 TANGK--HILATCKNYLLLTDVPIK 634 (776)
T ss_pred ecCCc--EEEEeecceEEEEecccc
Confidence 99994 677788888888887643
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.36 E-value=55 Score=39.02 Aligned_cols=162 Identities=15% Similarity=0.199 Sum_probs=92.5
Q ss_pred CCCeEEEeeCCCEEEEEecCCeEEEEcCCC--e-e----eEeEe--------e--------cccceeEEEEec--CCCEE
Q 037368 25 SGNITCCSSGRGKVVIGCDDGAVSLLDRGL--K-F----NFGFQ--------A--------HSSSVLFLQQLK--QRNFL 79 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~gs~dG~i~~~d~~~--~-~----~~~~~--------~--------H~~~V~~i~~~~--~~~~l 79 (823)
.++.+|+.. .+++++|. .+.|.+|+..+ . + ...+. . ....|+.|.+.. +..+|
T Consensus 40 KNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL 117 (717)
T PF08728_consen 40 KNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL 117 (717)
T ss_pred ccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence 456777766 77777764 88999998321 1 1 00110 0 113477776653 45789
Q ss_pred EEEecCCCCcccccceeEEEEeCCCCC----CC--CCCC------CCCceEEEEEeccCCCCCCceEEEEEe--cCCCCc
Q 037368 80 VTVGEDEQVSAQQSAVCLKVFDLDKME----PE--GTSS------TSPDCIGILRVFTSQFPEAKITSFLVL--EEAPPI 145 (823)
Q Consensus 80 ~s~s~D~~~~~~~~~~~vkvWdl~~~~----~~--~~~~------~~~~~~~~~~~~~~~~p~~~v~~va~~--~d~~~~ 145 (823)
+.|.+||. |-+|.++..- .. .... -.|.. .+++ +.++|.+|++ ...+.
T Consensus 118 l~c~DdG~---------V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f--~~~v------~~SaWGLdIh~~~~~rl- 179 (717)
T PF08728_consen 118 LLCTDDGD---------VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF--HLRV------GASAWGLDIHDYKKSRL- 179 (717)
T ss_pred EEEecCCe---------EEEEEHHHHHHHHHhhccccccccccccCCCCe--Eeec------CCceeEEEEEecCcceE-
Confidence 99999998 9999875321 00 0000 01111 1111 2459999999 77778
Q ss_pred ceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCC---eE-EEEEEc-CCeEEEEEe
Q 037368 146 LLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQ---AL-QLFAVT-PNSVILFSL 209 (823)
Q Consensus 146 ~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~---~~-~l~~~t-~~~V~~~d~ 209 (823)
||+++....|.+|--.+..++..... -.+....|.+|+|-++.. .. .|++++ .+.+.+|++
T Consensus 180 --IAVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 --IAVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --EEEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99999888898875432211111111 112356799999976541 12 333333 456888777
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.35 E-value=80 Score=35.09 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=84.8
Q ss_pred EEEeeC-CCEEEEEecCCeEEEEc---CCCeeeEeEee-cccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCC
Q 037368 29 TCCSSG-RGKVVIGCDDGAVSLLD---RGLKFNFGFQA-HSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 29 s~~~~~-~~~l~~gs~dG~i~~~d---~~~~~~~~~~~-H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
+-+++. .+++++|+.+|.+.=|- .+-.+.-+|.. ..|+|.+|.|++|.+.||.--.|.+ |.+.+.-
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~---------v~f~nf~ 96 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKT---------VDFCNFI 96 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCce---------EEEEecC
Confidence 444554 46788888888888886 23334446765 4589999999999999998888887 9998875
Q ss_pred CCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcc
Q 037368 104 KMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVM 183 (823)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It 183 (823)
.. .|+..-+.+ + +.....|..+.|+.+ .. +|.-. +..|-+|..+- ++ ...+.+...+-.|.
T Consensus 97 ~d--------~~~l~~~~~-c--k~k~~~IlGF~W~~s-~e---~A~i~-~~G~e~y~v~p--ek-rslRlVks~~~nvn 157 (657)
T KOG2377|consen 97 PD--------NSQLEYTQE-C--KTKNANILGFCWTSS-TE---IAFIT-DQGIEFYQVLP--EK-RSLRLVKSHNLNVN 157 (657)
T ss_pred CC--------chhhHHHHH-h--ccCcceeEEEEEecC-ee---EEEEe-cCCeEEEEEch--hh-hhhhhhhhcccCcc
Confidence 32 111110000 0 000123888899876 45 77766 55567775431 11 01222334455677
Q ss_pred eEEEeecCCeEEEEEEc
Q 037368 184 GLGFRVDGQALQLFAVT 200 (823)
Q Consensus 184 ~l~fs~dg~~~~l~~~t 200 (823)
.-.|.++-. ..|.+++
T Consensus 158 Wy~yc~et~-v~LL~t~ 173 (657)
T KOG2377|consen 158 WYMYCPETA-VILLSTT 173 (657)
T ss_pred EEEEccccc-eEeeecc
Confidence 777777653 3344443
No 435
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=83.12 E-value=1.5 Score=35.52 Aligned_cols=53 Identities=15% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 338 DMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
++++++++|+.|++.++.. .+.|. -...+..+|.-++..|+|.+|+..|-+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4678999999999999873 33332 35677788999999999999999988775
No 436
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.82 E-value=1.4e+02 Score=38.13 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=50.2
Q ss_pred cCChhH---HHHHHHHhCCCCCCCCcchHHHHHHHhccCCCCCHHHHHHHHHHHHhCCCCChHHHHHHhcCCCCcchHHH
Q 037368 721 AHDHEG---LIACCKRLGDSGKGGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERDDILPPIVVLQTLSRNPCLTLSVI 797 (823)
Q Consensus 721 ~~d~~~---~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~~~~~~~~~i~~~L~~i~~~~~l~p~~vl~~l~~~~~~~~~~v 797 (823)
.||.++ +.+=.-.-+.+ +.+||.-.+..-+...+ .+.++.+.+.+-. -.+++...
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK----RtDlW~VYid~eik~~~--~~~vR~lfeRvi~----------------l~l~~kkm 1670 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK----RTDLWSVYIDMEIKHGD--IKYVRDLFERVIE----------------LKLSIKKM 1670 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc----chhHHHHHHHHHHccCC--HHHHHHHHHHHHh----------------cCCChhHh
Confidence 477777 44433333444 66899877777666443 2445555553322 45678899
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 037368 798 KDYIARKLEQES-----KLIEGDRRAIENY 822 (823)
Q Consensus 798 k~~l~~~l~~~~-----~~i~~~~~~i~~~ 822 (823)
|.|..+||+=+. +.||.-+..-.+|
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 999999996543 4677666666655
No 437
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=82.67 E-value=18 Score=35.85 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhC
Q 037368 337 LDMLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIG 392 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~ 392 (823)
-..+...++++.|++..+.. ...+. ...+...+|..++..|+|++|.+.|.+.+.
T Consensus 72 a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 72 ALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 45666789999999987752 11111 234666778889999999999999998864
No 438
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.17 E-value=0.7 Score=36.87 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=38.3
Q ss_pred HHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 340 LFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 340 L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
|++.++|+.|+++.+.. ...|. -..+...+|..++..|+|++|...+-+.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57899999999998862 11111 34667788999999999999999877654
No 439
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.14 E-value=4.4 Score=42.81 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=30.7
Q ss_pred HHHHHHHhccHHHHHHHHHh--cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 336 KLDMLFKKNLYTVAINLVQS--QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~--~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
-+..+...+.++.|.++-+. ...+...-..++..+|..+.+.|++++|.+.|-+.+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566777776665544 111111224556677777778888888887777654
No 440
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.78 E-value=6.3 Score=46.25 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=39.2
Q ss_pred CCCEEEEEecCCeEEEEc--C---CCeeeE--eEeec--------------------ccceeEEEEec----CCCEEEEE
Q 037368 34 GRGKVVIGCDDGAVSLLD--R---GLKFNF--GFQAH--------------------SSSVLFLQQLK----QRNFLVTV 82 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d--~---~~~~~~--~~~~H--------------------~~~V~~i~~~~----~~~~l~s~ 82 (823)
++..++++..||.+.... . ++.... .+..+ .+.+..+.++. +..+|+|+
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 678899999999988877 2 222111 12212 12345555555 67899999
Q ss_pred ecCCCCcccccceeEEEEeCCCC
Q 037368 83 GEDEQVSAQQSAVCLKVFDLDKM 105 (823)
Q Consensus 83 s~D~~~~~~~~~~~vkvWdl~~~ 105 (823)
+.|++ +|+||+.+.
T Consensus 237 ~~D~~---------LRiW~l~t~ 250 (547)
T PF11715_consen 237 SRDHT---------LRIWSLETG 250 (547)
T ss_dssp ETTSE---------EEEEETTTT
T ss_pred eCCCe---------EEEEECCCC
Confidence 99998 999999853
No 441
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.52 E-value=95 Score=34.68 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec-----CCCCcceEEEeecCCeEEEEEEcCCeEEE
Q 037368 132 KITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD-----NQCSVMGLGFRVDGQALQLFAVTPNSVIL 206 (823)
Q Consensus 132 ~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~-----~~~~It~l~fs~dg~~~~l~~~t~~~V~~ 206 (823)
.++++++.+++.. +++| .+|.+..-+.+- +......+.+ ....++++.|.+++ .++++...++..
T Consensus 282 ~l~~v~~~~dg~l---~l~g-~~G~l~~S~d~G---~~~~~~~f~~~~~~~~~~~l~~v~~~~d~---~~~a~G~~G~v~ 351 (398)
T PLN00033 282 RIQNMGWRADGGL---WLLT-RGGGLYVSKGTG---LTEEDFDFEEADIKSRGFGILDVGYRSKK---EAWAAGGSGILL 351 (398)
T ss_pred ceeeeeEcCCCCE---EEEe-CCceEEEecCCC---CcccccceeecccCCCCcceEEEEEcCCC---cEEEEECCCcEE
Confidence 3899999999877 6666 466665443210 0000001111 12358999999876 355555555444
Q ss_pred EEecCCCCcceEE--ccCCCccceecccCCCeEEEeeC-CeE
Q 037368 207 FSLQNQPPKRQFL--DNIGCSTNSVAMSDRLELIIGRP-EAV 245 (823)
Q Consensus 207 ~d~~~~~~~~~~l--~~~~~~~~~~~~s~~~~liv~~~-~~I 245 (823)
...++.......- ++....++.+.|.++++..+.++ +.|
T Consensus 352 ~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 352 RSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred EeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 4443322222211 22234566777777677555444 444
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.07 E-value=19 Score=39.69 Aligned_cols=97 Identities=7% Similarity=0.114 Sum_probs=61.8
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEec---CCCCcceEEEeecCCeEEEEEEcCCeEEEEEe
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVD---NQCSVMGLGFRVDGQALQLFAVTPNSVILFSL 209 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~---~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~ 209 (823)
|.++.|++|.+. +|+--.+.+|.++.-. . ..+++...++ .+..|.|..|+.. .-++..++.++-+|..
T Consensus 69 I~SIkFSlDnki---lAVQR~~~~v~f~nf~--~-d~~~l~~~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 69 IKSIKFSLDNKI---LAVQRTSKTVDFCNFI--P-DNSQLEYTQECKTKNANILGFCWTSS---TEIAFITDQGIEFYQV 139 (657)
T ss_pred eeEEEeccCcce---EEEEecCceEEEEecC--C-CchhhHHHHHhccCcceeEEEEEecC---eeEEEEecCCeEEEEE
Confidence 999999999988 9999999999988521 0 1222222222 2456888888765 3577777888888876
Q ss_pred cCCCCcceEEccCCCccceecccCCCeEE
Q 037368 210 QNQPPKRQFLDNIGCSTNSVAMSDRLELI 238 (823)
Q Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~s~~~~li 238 (823)
.......+....+...++.-.|.++..++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceE
Confidence 53221223333455556655666665543
No 443
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.91 E-value=8.4 Score=40.05 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=62.7
Q ss_pred EEEEeecChHHHHHHHHHhccHHHHHHHHHhcCC-CHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHh
Q 037368 325 VLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQA-DAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKF 403 (823)
Q Consensus 325 v~~l~~~~~~~~i~~L~~~~~f~~Al~la~~~~~-~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kF 403 (823)
...+.|-.....+..|++.++|+.|+++-...+. .+..+..+.. .|--+|.-.+|.+|+.+|-+. +.+-|.+--.||
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSl-LgyCYY~~Q~f~~AA~CYeQL-~ql~P~~~qYrl 82 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSL-LGYCYYRLQEFALAAECYEQL-GQLHPELEQYRL 82 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHH-HHHHHHHHHHHHHHHHHHHHH-HhhChHHHHHHH
Confidence 3455667778889999999999999999876432 2223333332 233455667799999999986 567788877788
Q ss_pred hchhhHHHHHHHHHH
Q 037368 404 LDAQRIYNLTNYLEK 418 (823)
Q Consensus 404 l~~~~~~~L~~YL~~ 418 (823)
-.+|.+-.-..|-.+
T Consensus 83 Y~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 83 YQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHHHhcccHHH
Confidence 777665444444333
No 444
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.76 E-value=97 Score=34.28 Aligned_cols=138 Identities=14% Similarity=0.148 Sum_probs=65.6
Q ss_pred hhhhccCCCHHHHHHHHHHHhCCcChHHHHHHh---h---chhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChh
Q 037368 371 GDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKF---L---DAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVE 444 (823)
Q Consensus 371 ~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kF---l---~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~ 444 (823)
|+--|..||++.|+..|.+.+. .+.|-+-..| + ..++++.-..++-+||.-.+.+...-.-+.+.|.-+-+..
T Consensus 497 gn~~f~ngd~dka~~~ykeal~-ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 4456778899999999988753 3444443344 1 1234554445555566433333333333455665555544
Q ss_pred hHHHhhcCCCCCCcccCCH---HHHHHHHHhcCCHHHHHHHHHH----hCC----hHHHHHHHHHhhcCHHHHHHHHhc
Q 037368 445 KLNMFIKGEDGVGEHKFDV---ETAIRVCRAANYHEHAMYVAKK----AGK----HELYLKILLEDLGRYDEALQYISS 512 (823)
Q Consensus 445 ~l~~fi~~~~~~~~~~~d~---~~ai~vl~~~g~~~~a~~la~~----~~~----~~~~l~il~~~~~~~~~al~yl~~ 512 (823)
.--+|+..-+ +.++-|. ...-++.-+.|...+|++..-. +.. -+|.-.++++- +=+++|++|+.+
T Consensus 576 qaie~~~q~~--slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ek 651 (840)
T KOG2003|consen 576 QAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 3333333221 1111121 1111222344444444433211 111 12333444543 667888888876
No 445
>PRK02888 nitrous-oxide reductase; Validated
Probab=80.66 E-value=36 Score=39.79 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=44.9
Q ss_pred CCCcceEEEeecCCeEEEEEEcC--CeEEEEEecCCCC-------cceEEc---cCCCccceecccCCCeEEEe--eCCe
Q 037368 179 QCSVMGLGFRVDGQALQLFAVTP--NSVILFSLQNQPP-------KRQFLD---NIGCSTNSVAMSDRLELIIG--RPEA 244 (823)
Q Consensus 179 ~~~It~l~fs~dg~~~~l~~~t~--~~V~~~d~~~~~~-------~~~~l~---~~~~~~~~~~~s~~~~liv~--~~~~ 244 (823)
.....++.++|||+ .+++++. ..|.++|+..... +..++. .-|..+--.+|+++|...++ -++.
T Consensus 320 GKsPHGV~vSPDGk--ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGK--YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCC--EEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecce
Confidence 45578999999995 5776764 4699999875321 111111 12333445678888775543 4678
Q ss_pred EEEEecC
Q 037368 245 VYFYEVD 251 (823)
Q Consensus 245 I~i~~~~ 251 (823)
|.-|+++
T Consensus 398 v~kwn~~ 404 (635)
T PRK02888 398 IVKWNIE 404 (635)
T ss_pred eEEEehH
Confidence 8889976
No 446
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.35 E-value=34 Score=41.76 Aligned_cols=113 Identities=24% Similarity=0.398 Sum_probs=72.7
Q ss_pred CCCeEEEeeCCCEEEEEecCCeEEEEc--CCCeeeEeEee---cccceeEEEEecCC------CEEEEEecCCCCccccc
Q 037368 25 SGNITCCSSGRGKVVIGCDDGAVSLLD--RGLKFNFGFQA---HSSSVLFLQQLKQR------NFLVTVGEDEQVSAQQS 93 (823)
Q Consensus 25 ~~~is~~~~~~~~l~~gs~dG~i~~~d--~~~~~~~~~~~---H~~~V~~i~~~~~~------~~l~s~s~D~~~~~~~~ 93 (823)
...|.+++.++..++++...|.+..+- .++++. .|.. -+.-|.|+++.+++ ++++-++.|++
T Consensus 539 ~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~-E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~------ 611 (1205)
T KOG1898|consen 539 RVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLN-EFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNM------ 611 (1205)
T ss_pred ceEEEEEeecceEEEEEccCCeEEEEEeccCccce-eeeeeeeeceeehhhccCCCCcchhhcceeeeeccccc------
Confidence 344788888899999999899876554 566655 3432 34789999997754 57899999998
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC------cceEEEEEeCCeEEEE
Q 037368 94 AVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP------ILLIAIGLDNGCIYCI 160 (823)
Q Consensus 94 ~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~------~~~ia~G~~dG~V~l~ 160 (823)
+|+..+...+ |+..+..+.-+.| +.++.+-+.... .+-+-+|..+|.+.-+
T Consensus 612 ---vriisL~p~d----------~l~~ls~q~l~~~---~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 612 ---VRIISLDPSD----------CLQPLSVQGLSSP---PESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ---eeEEEecCcc----------eEEEccccccCCC---ccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 9999998532 4444443321222 444444222211 1127788888877655
No 447
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=80.29 E-value=2.2 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=9.1
Q ss_pred HhhhhccCCCHHHHHHHH
Q 037368 370 YGDHLYSKQDYDEAMSQY 387 (823)
Q Consensus 370 y~d~L~~k~~y~~A~~~y 387 (823)
.|.-+|+.|+|++|+..+
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 345555555555555444
No 448
>PRK13684 Ycf48-like protein; Provisional
Probab=80.17 E-value=95 Score=33.80 Aligned_cols=183 Identities=14% Similarity=0.175 Sum_probs=84.2
Q ss_pred eeCCCEEEEEecCCeEEEEcCCCeeeEeEe-ecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 32 SSGRGKVVIGCDDGAVSLLDRGLKFNFGFQ-AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 32 ~~~~~~l~~gs~dG~i~~~d~~~~~~~~~~-~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
+..++.+..++..|.|..-+-.|+.-..+. .-.+.+..+.+.|++.++ .++..|. + .+-++-..
T Consensus 139 ~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v-~~g~~G~----i----~~s~~~gg------ 203 (334)
T PRK13684 139 ALGPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYV-AVSSRGN----F----YSTWEPGQ------ 203 (334)
T ss_pred EECCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEE-EEeCCce----E----EEEcCCCC------
Confidence 334443444445565555443333111111 124678889998877555 4556664 0 22222110
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEE-ec---CCCCcceEE
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQ-VD---NQCSVMGLG 186 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~-~~---~~~~It~l~ 186 (823)
. .-..+.. ... ..++++++.|+++. +++|. +|.+++-..+ .+.....+ .. ....++++.
T Consensus 204 ---~--tW~~~~~-~~~---~~l~~i~~~~~g~~---~~vg~-~G~~~~~s~d----~G~sW~~~~~~~~~~~~~l~~v~ 266 (334)
T PRK13684 204 ---T--AWTPHQR-NSS---RRLQSMGFQPDGNL---WMLAR-GGQIRFNDPD----DLESWSKPIIPEITNGYGYLDLA 266 (334)
T ss_pred ---C--eEEEeeC-CCc---ccceeeeEcCCCCE---EEEec-CCEEEEccCC----CCCccccccCCccccccceeeEE
Confidence 1 0111110 001 23899999999887 77775 6766542111 11111111 11 123578889
Q ss_pred EeecCCeEEEEEEcCCeEEEEEecCCCCcceEE--ccCCCccceecccCCCe-EEEeeCCeEEEEe
Q 037368 187 FRVDGQALQLFAVTPNSVILFSLQNQPPKRQFL--DNIGCSTNSVAMSDRLE-LIIGRPEAVYFYE 249 (823)
Q Consensus 187 fs~dg~~~~l~~~t~~~V~~~d~~~~~~~~~~l--~~~~~~~~~~~~s~~~~-liv~~~~~I~i~~ 249 (823)
|.+++ . ++++...+..+...++.......- .......+.+.+.++++ +++|..+.|--|+
T Consensus 267 ~~~~~--~-~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 267 YRTPG--E-IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EcCCC--C-EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 98876 3 445545554445444322211111 11112234455544454 4455555555554
No 449
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.58 E-value=11 Score=38.33 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=45.4
Q ss_pred ccccCCeEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEec-cc---------------cceeEE-EeecCcEEEE
Q 037368 257 WAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSL-VV---------------KEVSHM-LCEWGNIILV 319 (823)
Q Consensus 257 ~~~~g~~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~-~i---------------~~v~~v-~~~~~~~~vv 319 (823)
+.++.....+...+.|+++++. +|.+.+||+.++...+.. .+ +.+..+ +...|..+|.
T Consensus 9 i~Lgs~~~~l~~~~~~Ll~iT~-----~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 9 IVLGSPVSFLECNGSYLLAITS-----SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EecCCceEEEEeCCCEEEEEeC-----CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 4555556778888999999984 589999999988766544 21 113333 3455556666
Q ss_pred EcCCeEEEEe
Q 037368 320 MTDKSVLCIG 329 (823)
Q Consensus 320 s~~~~v~~l~ 329 (823)
.++|+.|...
T Consensus 84 lsng~~y~y~ 93 (219)
T PF07569_consen 84 LSNGDSYSYS 93 (219)
T ss_pred EeCCCEEEec
Confidence 6677776653
No 450
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=79.49 E-value=58 Score=33.66 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=40.5
Q ss_pred HHHHHHHHhccHHHHHHHHHhc--CCC-HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 335 SKLDMLFKKNLYTVAINLVQSQ--QAD-AAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 335 ~~i~~L~~~~~f~~Al~la~~~--~~~-~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
..-..++++++|+.|++.-+.. ..| +.......-..|.-+|..++|++|+..|-+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456677899999999977652 222 22344445567888999999999998876543
No 451
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.40 E-value=13 Score=45.40 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=88.8
Q ss_pred EeEeecc-cceeEEEEecCCCEEEE--EecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceE
Q 037368 58 FGFQAHS-SSVLFLQQLKQRNFLVT--VGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKIT 134 (823)
Q Consensus 58 ~~~~~H~-~~V~~i~~~~~~~~l~s--~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~ 134 (823)
.+|+-|. -+|..+.+.+|+...+. .+.|.. |-++|+.+.......+..|.|...+......+ ..
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~---------v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf----~~ 159 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA---------VYSFDLEEFSESRYETTVPLKNSATSFEKPVF----QL 159 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCce---------EEEEehHhhhhhhhhhccccccccchhccccc----cc
Confidence 4677775 57788888888766443 344222 88899986543222223343322211111112 56
Q ss_pred EEEEecCCCCcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcC-CeEEEEEecCCC
Q 037368 135 SFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTP-NSVILFSLQNQP 213 (823)
Q Consensus 135 ~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~-~~V~~~d~~~~~ 213 (823)
++.|.|.--. ..|+-..|+.|.+...... .+...-......+|+++|+|.|+ .++++-. +.+.-|-....
T Consensus 160 ~~~wnP~vp~--n~av~l~dlsl~V~~~~~~----~~~v~s~p~t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~le- 230 (1405)
T KOG3630|consen 160 KNVWNPLVPL--NSAVDLSDLSLRVKSTKQL----AQNVTSFPVTNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPSLE- 230 (1405)
T ss_pred cccccCCccc--hhhhhccccchhhhhhhhh----hhhhcccCcccceeeEEeccccc--eeeEecCCCeEEEeecccc-
Confidence 7778776422 2566677888887754321 11111122245688999999995 5666654 44666654321
Q ss_pred CcceEEc----cCCCccceecccCCCeEEEee
Q 037368 214 PKRQFLD----NIGCSTNSVAMSDRLELIIGR 241 (823)
Q Consensus 214 ~~~~~l~----~~~~~~~~~~~s~~~~liv~~ 241 (823)
.+..+. .....+.|++|-....|+|..
T Consensus 231 -ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 231 -IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 112221 113567799998777776653
No 452
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.32 E-value=1.1e+02 Score=34.16 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=98.1
Q ss_pred ceeEEEEecCCCEEE-EEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEE-EEEeccCCCCCCceEEEEEecCCC
Q 037368 66 SVLFLQQLKQRNFLV-TVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIG-ILRVFTSQFPEAKITSFLVLEEAP 143 (823)
Q Consensus 66 ~V~~i~~~~~~~~l~-s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~v~~va~~~d~~ 143 (823)
.+...+++|+|+++| +.+..|.. ...++|.|+.+.. .+. .+.. ....+++|.+|++
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e-----~~~l~v~Dl~tg~----------~l~d~i~~-------~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSE-----WYTLRVFDLETGK----------FLPDGIEN-------PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSS-----EEEEEEEETTTTE----------EEEEEEEE-------EESEEEEECTTSS
T ss_pred EeeeeeECCCCCEEEEEecCCCCc-----eEEEEEEECCCCc----------CcCCcccc-------cccceEEEeCCCC
Confidence 445678899999876 55665541 2239999998531 221 2221 1134499999987
Q ss_pred CcceEEEEEeCC---------e--EEEEEcccccccccc-eeEEecC-CCC--cceEEEeecCCeEEEEEEc--C-CeEE
Q 037368 144 PILLIAIGLDNG---------C--IYCIKGDIARERITR-FKLQVDN-QCS--VMGLGFRVDGQALQLFAVT--P-NSVI 205 (823)
Q Consensus 144 ~~~~ia~G~~dG---------~--V~l~~~~~~~~~~~k-~~~~~~~-~~~--It~l~fs~dg~~~~l~~~t--~-~~V~ 205 (823)
. +.....+. . |..|+.. .... -.++++. .++ ..++..+.|++..++.+.+ . +.++
T Consensus 183 ~---~~y~~~~~~~~~~~~~~~~~v~~~~~g----t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 183 G---FFYTRFDEDQRTSDSGYPRQVYRHKLG----TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp E---EEEEECSTTTSS-CCGCCEEEEEEETT----S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred E---EEEEEeCcccccccCCCCcEEEEEECC----CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
Confidence 7 55554333 2 4445431 1111 2355544 334 4578888888622222232 2 3478
Q ss_pred EEEecCC----CCcceEEccCCCccceecccCCCeEEE-eeC----CeEEEEecCCCCc----cccccC-C---eEEEEe
Q 037368 206 LFSLQNQ----PPKRQFLDNIGCSTNSVAMSDRLELII-GRP----EAVYFYEVDGRGP----CWAFEG-E---KKLLGW 268 (823)
Q Consensus 206 ~~d~~~~----~~~~~~l~~~~~~~~~~~~s~~~~liv-~~~----~~I~i~~~~g~~~----~~~~~g-~---~~~i~~ 268 (823)
+.++... ..+..+..+.......+.. .++.|.+ +.. ..|.-.++..... ...++. . ...+..
T Consensus 256 ~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~ 334 (414)
T PF02897_consen 256 LLDLDDGGSPDAKPKLLSPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL 334 (414)
T ss_dssp EEECCCTTTSS-SEEEEEESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE
T ss_pred EEeccccCCCcCCcEEEeCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE
Confidence 8887653 1233333222111111111 1444443 222 2344444442221 011221 1 235677
Q ss_pred eCcEEEEEEecCCCCccEEEEEeCC-CCE
Q 037368 269 FRGYLLCVIADQRNSKNIFNVYDLK-NRL 296 (823)
Q Consensus 269 ~~~ylv~~s~d~~~~~~~I~I~D~~-~~~ 296 (823)
++++|++..... ....|+++|+. +..
T Consensus 335 ~~~~Lvl~~~~~--~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 335 FKDYLVLSYREN--GSSRLRVYDLDDGKE 361 (414)
T ss_dssp ETTEEEEEEEET--TEEEEEEEETT-TEE
T ss_pred ECCEEEEEEEEC--CccEEEEEECCCCcE
Confidence 889988876432 45789999999 443
No 453
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=79.26 E-value=4.2 Score=38.23 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=9.1
Q ss_pred HHhhhhccCCCHHHHHHHH
Q 037368 369 KYGDHLYSKQDYDEAMSQY 387 (823)
Q Consensus 369 ~y~d~L~~k~~y~~A~~~y 387 (823)
+.|.-++.+|+|++|...+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3344444555555555444
No 454
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal
Probab=79.21 E-value=13 Score=38.87 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=67.3
Q ss_pred HHHHHhccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcc-hHHHHHHHhccC---C-CCC---HHHHHHHHHHHHhC
Q 037368 703 YLYEKLKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPS-LWVDLLKYFGEL---G-EDC---SKEVKEVLTYIERD 774 (823)
Q Consensus 703 ~L~~k~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~-Lw~~ll~~~~~~---~-~~~---~~~i~~~L~~i~~~ 774 (823)
....|+|.|+++++..++.- ++.+|.|++..-.+ .... .|..+|--+.++ + +.. ...+++.|..+..
T Consensus 245 LC~trL~~~E~sId~LLdrC-PqAVV~YA~helk~---e~~~lWWkkLLpELc~rir~~~~~~~l~ls~LKEtLsvvA~- 319 (353)
T PF14763_consen 245 LCITRLGEYEKSIDKLLDRC-PQAVVPYANHELKE---EHQELWWKKLLPELCDRIRCGGDRQELLLSSLKETLSVVAM- 319 (353)
T ss_pred hhhhhhccHHHHHHHHHHhC-cHHHHHHhhhhccc---chHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHhhc-
Confidence 34567899999999999854 77889999876533 1223 455555544332 1 111 1345677776655
Q ss_pred CCCChHHHHHHhcCCCCcchHHHHHHHHHHHHHH
Q 037368 775 DILPPIVVLQTLSRNPCLTLSVIKDYIARKLEQE 808 (823)
Q Consensus 775 ~~l~p~~vl~~l~~~~~~~~~~vk~~l~~~l~~~ 808 (823)
-++|...+.+|| +.-|...+=+||..+-++.
T Consensus 320 -eLe~~dFLnlLP--eDGtAaFFLPyLl~cs~kk 350 (353)
T PF14763_consen 320 -ELELRDFLNLLP--EDGTAAFFLPYLLYCSRKK 350 (353)
T ss_pred -cCCHHHHHhhCC--CccchHHHHHHHHHHHhhc
Confidence 599999999999 5667888999998877654
No 455
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.51 E-value=79 Score=36.81 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhcCCHHHHHHHHHHhCChHHHHHHHHHhhcCHHHHHHHHhc-CC-hHHHHHHHHHHHHHHHhcCCHHHHH
Q 037368 462 DVETAIRVCRAANYHEHAMYVAKKAGKHELYLKILLEDLGRYDEALQYISS-LD-PSQAGVTVKEYGKILIEHKPMETID 539 (823)
Q Consensus 462 d~~~ai~vl~~~g~~~~a~~la~~~~~~~~~l~il~~~~~~~~~al~yl~~-l~-~~~~~~~i~k~~~~Ll~~~p~~~~~ 539 (823)
|-++||+.+.++...+.-..+|...--|+-+.. ..|++|..+.+. +. .++-++.++--|.+-+..-.-+..+
T Consensus 436 dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~------ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT------EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHHHHHHHhhccCCccchhhhhcCChhhhh------HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH
Confidence 566777777777666665555555444554432 578888888876 22 2234666666664444444444444
Q ss_pred HHHH
Q 037368 540 ILLR 543 (823)
Q Consensus 540 ll~~ 543 (823)
+..+
T Consensus 510 ~~fq 513 (638)
T KOG1126|consen 510 FHFQ 513 (638)
T ss_pred HHHH
Confidence 4443
No 456
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.50 E-value=1e+02 Score=33.30 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=32.0
Q ss_pred EEEEEeCCeEEEEEccc-ccccccceeEEecCCCCcce-EEEeecCCeEEEEEEcCCeEEEEEecCCC
Q 037368 148 IAIGLDNGCIYCIKGDI-ARERITRFKLQVDNQCSVMG-LGFRVDGQALQLFAVTPNSVILFSLQNQP 213 (823)
Q Consensus 148 ia~G~~dG~V~l~~~~~-~~~~~~k~~~~~~~~~~It~-l~fs~dg~~~~l~~~t~~~V~~~d~~~~~ 213 (823)
+..-++||++..+..+- -+....+...+...++|+.. =.++..+. ..+|++..+.|+..++.+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSS
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCc
Confidence 44445588888775431 00000111222223445443 23443332 46777778889999998754
No 457
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.35 E-value=28 Score=38.51 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=57.3
Q ss_pred eEEEEEecCCCCcceEEEEE-----------eCC-eEEEEEcccccccc--cceeEEecCCCCcceEEEeecCCeEEEEE
Q 037368 133 ITSFLVLEEAPPILLIAIGL-----------DNG-CIYCIKGDIARERI--TRFKLQVDNQCSVMGLGFRVDGQALQLFA 198 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~-----------~dG-~V~l~~~~~~~~~~--~k~~~~~~~~~~It~l~fs~dg~~~~l~~ 198 (823)
+.+++|+++|+. .++-. ..| .|.+++-. ...+ -+..++.+.-...++|+|.++| |++
T Consensus 16 P~~ia~d~~G~l---~V~e~~~y~~~~~~~~~~~~rI~~l~d~--dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----lyV 86 (367)
T TIGR02604 16 PIAVCFDERGRL---WVAEGITYSRPAGRQGPLGDRILILEDA--DGDGKYDKSNVFAEELSMVTGLAVAVGG----VYV 86 (367)
T ss_pred CceeeECCCCCE---EEEeCCcCCCCCCCCCCCCCEEEEEEcC--CCCCCcceeEEeecCCCCccceeEecCC----EEE
Confidence 688999999987 66532 123 77776421 0011 1234445544556899998875 777
Q ss_pred EcCCeEEEE-EecCCC----CcceEEccC-------CCccceecccCCCeEEEee
Q 037368 199 VTPNSVILF-SLQNQP----PKRQFLDNI-------GCSTNSVAMSDRLELIIGR 241 (823)
Q Consensus 199 ~t~~~V~~~-d~~~~~----~~~~~l~~~-------~~~~~~~~~s~~~~liv~~ 241 (823)
++...|..| +..+.. ....+++.. ...++.+.|.|||.+.++-
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~ 141 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH 141 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec
Confidence 777777766 443322 111222211 1224567788898876643
No 458
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=78.34 E-value=19 Score=45.25 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=80.1
Q ss_pred hccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcCh----------------------HHH
Q 037368 343 KNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEP----------------------SYV 399 (823)
Q Consensus 343 ~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~ep----------------------s~v 399 (823)
+++|+.|+.+.+.. ..+|.. ..++...+..++..|++++|....-+.+. .+| +.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~-ldP~n~~~~~~La~i~~~~kA~~~ye~l 134 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLK-RHPGDARLERSLAAIPVEVKSVTTVEEL 134 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCcccHHHHHHHHHhccChhHHHHHHHH
Confidence 46666666666552 223333 55556666666777777777666555432 222 122
Q ss_pred HHHhhchhhHHHHHHH----------------HHHHHHcCCCChh-H----HHHHHHHHHhcCChh----hHHHhhcCCC
Q 037368 400 IQKFLDAQRIYNLTNY----------------LEKLHEKGFASKD-H----TTLLLNCYTKLKDVE----KLNMFIKGED 454 (823)
Q Consensus 400 I~kFl~~~~~~~L~~Y----------------L~~l~~~~~~~~~-~----~~lLl~~y~kl~~~~----~l~~fi~~~~ 454 (823)
+..+++..+...+.-+ +.+|. ....... | ...+..+|.++++-+ .+.++++..+
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 3333333333322222 22343 2211122 2 333478999998843 4555555543
Q ss_pred CCCcccCCHHHH---HHHHHhc-CCHHHHHHHHHHh-CChH----HHHHHHHHhhcCHHHHHHHHhcCCh
Q 037368 455 GVGEHKFDVETA---IRVCRAA-NYHEHAMYVAKKA-GKHE----LYLKILLEDLGRYDEALQYISSLDP 515 (823)
Q Consensus 455 ~~~~~~~d~~~a---i~vl~~~-g~~~~a~~la~~~-~~~~----~~l~il~~~~~~~~~al~yl~~l~~ 515 (823)
.+.+.. -.+..+. +. +.|..+.+.. .+.. .+.+.++.. |++++|...|+++++
T Consensus 214 ------l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~-G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 214 ------LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYR-GEKARLQHYLIENKP 275 (987)
T ss_pred ------CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHC-CCHHHHHHHHHhCcc
Confidence 222211 1122331 33 5555553321 1111 234566665 999999999998754
No 459
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=78.26 E-value=1.4e+02 Score=34.65 Aligned_cols=55 Identities=24% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHHHHHhccHHHHHHHHHhc---CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCC
Q 037368 336 KLDMLFKKNLYTVAINLVQSQ---QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGH 393 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~---~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~ 393 (823)
+..+|.+.|+|+.||+.-+.. .+| ...+...-|+.|+.-|++++|...|...|..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDR 67 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467788999999999987653 223 3567778899999999999999999887653
No 460
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=77.80 E-value=1.2e+02 Score=33.78 Aligned_cols=87 Identities=8% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHhccHHHHHHHHHh-cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH------HHHHHhhchhhHHHHH
Q 037368 341 FKKNLYTVAINLVQS-QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS------YVIQKFLDAQRIYNLT 413 (823)
Q Consensus 341 ~~~~~f~~Al~la~~-~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps------~vI~kFl~~~~~~~L~ 413 (823)
.+.|+++.|....+. ...+++.........+......|+|+.|...+-+... .+|. ....-++..++.+...
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~-~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE-VAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 567899999887765 2223332222333448888999999999998877533 3332 2334555667888899
Q ss_pred HHHHHHHHcCCCChh
Q 037368 414 NYLEKLHEKGFASKD 428 (823)
Q Consensus 414 ~YL~~l~~~~~~~~~ 428 (823)
..|+.+.+....+..
T Consensus 208 ~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 208 DILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHcCCCCHH
Confidence 999998876554443
No 461
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.76 E-value=25 Score=35.17 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=75.1
Q ss_pred HHHHHHHhccHHHHHHHHHhc--CCC-HHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChHHHHHHhhchhhHHHH
Q 037368 336 KLDMLFKKNLYTVAINLVQSQ--QAD-AAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNL 412 (823)
Q Consensus 336 ~i~~L~~~~~f~~Al~la~~~--~~~-~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps~vI~kFl~~~~~~~L 412 (823)
.-..++++|+|+.|++.-+.. ..| ........-..|+-+|..|+|++|+..|-. .|..|++...++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~---------fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER---------FIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH---------HHHH-TT-TTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHCCCCcchhhH
Confidence 345677899999999877651 122 112344455668889999999999988664 56777776554432
Q ss_pred HHHHHHHHHc----C--CCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHHh
Q 037368 413 TNYLEKLHEK----G--FASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKKA 486 (823)
Q Consensus 413 ~~YL~~l~~~----~--~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~~ 486 (823)
.|+..+-.- + ....+.+. +-.. ...|..||+..+ + .--++.|-..+.. +-...
T Consensus 82 -~Y~~g~~~~~~~~~~~~~~~D~~~-~~~A------~~~~~~li~~yP---~-S~y~~~A~~~l~~---------l~~~l 140 (203)
T PF13525_consen 82 -LYMLGLSYYKQIPGILRSDRDQTS-TRKA------IEEFEELIKRYP---N-SEYAEEAKKRLAE---------LRNRL 140 (203)
T ss_dssp -HHHHHHHHHHHHHHHH-TT---HH-HHHH------HHHHHHHHHH-T---T-STTHHHHHHHHHH---------HHHHH
T ss_pred -HHHHHHHHHHhCccchhcccChHH-HHHH------HHHHHHHHHHCc---C-chHHHHHHHHHHH---------HHHHH
Confidence 222221100 0 01111111 1111 246778888876 2 2223333322221 22333
Q ss_pred CChHHHHHHHHHhhcCHHHHHHHHhc
Q 037368 487 GKHELYLKILLEDLGRYDEALQYISS 512 (823)
Q Consensus 487 ~~~~~~l~il~~~~~~~~~al~yl~~ 512 (823)
..|+..+.-+....+.|..|+...+.
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 35666666565566888888876664
No 462
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=77.46 E-value=4.9 Score=40.28 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=51.4
Q ss_pred cCCCCeEEEeeC-CC--EEEEEecCCeEEEEcCC-CeeeEeEeecc-cceeEEEEecCCCEEEEE--ecCCCCcccccce
Q 037368 23 EVSGNITCCSSG-RG--KVVIGCDDGAVSLLDRG-LKFNFGFQAHS-SSVLFLQQLKQRNFLVTV--GEDEQVSAQQSAV 95 (823)
Q Consensus 23 ~~~~~is~~~~~-~~--~l~~gs~dG~i~~~d~~-~~~~~~~~~H~-~~V~~i~~~~~~~~l~s~--s~D~~~~~~~~~~ 95 (823)
.+...|.|+.+. +. ..++|..+|.|+.|+.. ++.+-.-..|. .++....++..+.++++. |.|..
T Consensus 99 s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~-------- 170 (238)
T KOG2444|consen 99 SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRV-------- 170 (238)
T ss_pred cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchh--------
Confidence 445567777764 33 67899999999999943 34443344566 677777777777777777 77776
Q ss_pred eEEEEeCCC
Q 037368 96 CLKVFDLDK 104 (823)
Q Consensus 96 ~vkvWdl~~ 104 (823)
+|.|++..
T Consensus 171 -~k~W~ve~ 178 (238)
T KOG2444|consen 171 -LKKWNVEK 178 (238)
T ss_pred -hhhcchhh
Confidence 88898875
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=76.85 E-value=1.7 Score=51.27 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=43.6
Q ss_pred CEEEEEecCCeEEEEcCCCeeeEeEeecccceeEEEE-----------ecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 36 GKVVIGCDDGAVSLLDRGLKFNFGFQAHSSSVLFLQQ-----------LKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~-----------~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
.++..|..+|+|++++-+-....-|++|+..++++++ +|||+.+|+.+.||. +++|.+.-
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~---------v~f~Qiyi 266 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS---------VGFYQIYI 266 (1283)
T ss_pred ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc---------cceeeeee
Confidence 5778889999999877332222457779877777665 678888888888886 88887653
No 464
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=76.59 E-value=3.4 Score=45.80 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=48.1
Q ss_pred eEEEe-eCCCEEEEEecCCeEEEEcCCCeeeEe-EeecccceeEEEEecCCCEE-EEEecCCCCcccccceeEEEEeCC
Q 037368 28 ITCCS-SGRGKVVIGCDDGAVSLLDRGLKFNFG-FQAHSSSVLFLQQLKQRNFL-VTVGEDEQVSAQQSAVCLKVFDLD 103 (823)
Q Consensus 28 is~~~-~~~~~l~~gs~dG~i~~~d~~~~~~~~-~~~H~~~V~~i~~~~~~~~l-~s~s~D~~~~~~~~~~~vkvWdl~ 103 (823)
.+|.. ...|++|+||..|-|++||+-|...++ +.+....|.+|.+..+|+++ ||| .. . +-+-|+.
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~-y---------llL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KN-Y---------LLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cc-e---------EEEEecc
Confidence 44444 456899999999999999976654433 56677899999999999886 555 22 2 6677765
No 465
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=75.25 E-value=1.1e+02 Score=36.56 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=58.5
Q ss_pred eEEEEEec--CCCCcceEEEEEeCCeEEEEEcc-cc----c---ccc-------cceeEEecCCCCcceEEEeecCCeEE
Q 037368 133 ITSFLVLE--EAPPILLIAIGLDNGCIYCIKGD-IA----R---ERI-------TRFKLQVDNQCSVMGLGFRVDGQALQ 195 (823)
Q Consensus 133 v~~va~~~--d~~~~~~ia~G~~dG~V~l~~~~-~~----~---~~~-------~k~~~~~~~~~~It~l~fs~dg~~~~ 195 (823)
|+-+.+.. +... ++++..||.|.+|... +. + +.. .++......+...+||++....+..+
T Consensus 103 IN~i~v~~lg~~EV---Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 103 INFIKVGDLGGEEV---LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred eeEEEecccCCeeE---EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceE
Confidence 55554432 2235 8889999999999753 10 0 000 11222223366899999972222245
Q ss_pred EEEEcCC-eEEEEEecC---CCCcceEEccCCCccceecccC-----CCe-EEEee--CCeEEEEec
Q 037368 196 LFAVTPN-SVILFSLQN---QPPKRQFLDNIGCSTNSVAMSD-----RLE-LIIGR--PEAVYFYEV 250 (823)
Q Consensus 196 l~~~t~~-~V~~~d~~~---~~~~~~~l~~~~~~~~~~~~s~-----~~~-liv~~--~~~I~i~~~ 250 (823)
++++..+ +|.+|-... +....... .++..+.|++|-+ .|. .+++. .+.+++|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5555443 455554332 21111111 2455677888764 233 44443 366666655
No 466
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.53 E-value=32 Score=38.48 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=34.2
Q ss_pred cCCCCcceEEEEEeCCeEEEEEc--ccccccccceeEEecCCCCcceEEEeecCC-------eEEEEEEcCCeEEEEE
Q 037368 140 EEAPPILLIAIGLDNGCIYCIKG--DIARERITRFKLQVDNQCSVMGLGFRVDGQ-------ALQLFAVTPNSVILFS 208 (823)
Q Consensus 140 ~d~~~~~~ia~G~~dG~V~l~~~--~~~~~~~~k~~~~~~~~~~It~l~fs~dg~-------~~~l~~~t~~~V~~~d 208 (823)
+|..+ ||+|+.+|-|++|.- .++. .+.+ +++||..|....... ...|++...+.|...|
T Consensus 77 ~dw~~---I~VG~ssG~vrfyte~G~LL~-----~Q~~--h~~pV~~ik~~~~~~~~~~~~~~eel~ily~~~v~~Id 144 (415)
T PF14655_consen 77 PDWTC---IAVGTSSGYVRFYTENGVLLL-----SQLL--HEEPVLKIKCRSTKIPRHPGDSSEELSILYPSAVVIID 144 (415)
T ss_pred CCcEE---EEEEecccEEEEEeccchHHH-----HHhc--CccceEEEEecccCCCCCCcccccEEEEEECCEEEEEe
Confidence 34456 999999999999953 2111 0111 377888888754321 0235555555555544
No 467
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.39 E-value=1.3e+02 Score=31.63 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred EEEEcCCCeeeE---eEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe
Q 037368 47 VSLLDRGLKFNF---GFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV 123 (823)
Q Consensus 47 i~~~d~~~~~~~---~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~ 123 (823)
.-+|..+....- ...+-.+.|+.+.++|+.+.|+++..... --|| +.+ ..+.++++.+
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~---------~iVE-lt~---------~GdlirtiPL 125 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPA---------AIVE-LTK---------EGDLIRTIPL 125 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCc---------eEEE-Eec---------CCceEEEecc
Confidence 455554443321 12334456999999999999999876553 3344 222 2347887765
Q ss_pred ccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcccccc-cccc-eeEEec---C-CCCcceEEEeecCCeEEEE
Q 037368 124 FTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARE-RITR-FKLQVD---N-QCSVMGLGFRVDGQALQLF 197 (823)
Q Consensus 124 ~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~~~~-~~~k-~~~~~~---~-~~~It~l~fs~dg~~~~l~ 197 (823)
..-.- .-++++..+++. +++-=.++.+.++..+--.. ...+ +++-.+ . +..--|++|.+.+ ..++
T Consensus 126 ~g~~D----pE~Ieyig~n~f---vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~ 196 (316)
T COG3204 126 TGFSD----PETIEYIGGNQF---VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLF 196 (316)
T ss_pred cccCC----hhHeEEecCCEE---EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEE
Confidence 42111 456777776655 44444466777665431000 0011 111111 1 3345689998877 4577
Q ss_pred EEcCCe-EEEEEec
Q 037368 198 AVTPNS-VILFSLQ 210 (823)
Q Consensus 198 ~~t~~~-V~~~d~~ 210 (823)
++-... +.+|.+.
T Consensus 197 ~aKEr~P~~I~~~~ 210 (316)
T COG3204 197 VAKERNPIGIFEVT 210 (316)
T ss_pred EEEccCCcEEEEEe
Confidence 675443 4455443
No 468
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=71.73 E-value=14 Score=37.11 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCCEEEEEecCCeEEEEcCC--CeeeEeEeecccceeEE-EEecCCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 34 GRGKVVIGCDDGAVSLLDRG--LKFNFGFQAHSSSVLFL-QQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 34 ~~~~l~~gs~dG~i~~~d~~--~~~~~~~~~H~~~V~~i-~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
....++.|+.+|.|.+|+.+ |.....+..-..+|.++ ....++.+..+++.||. |+.|+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~---------ir~~n~~p 133 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR---------IRACNIKP 133 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc---------eeeecccc
Confidence 45689999999999999954 22221111112234333 22335567888889987 99999874
No 469
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.32 E-value=69 Score=36.83 Aligned_cols=168 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHhccHHHHHHHHHhc---------------CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCc---ChHHHH
Q 037368 339 MLFKKNLYTVAINLVQSQ---------------QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHL---EPSYVI 400 (823)
Q Consensus 339 ~L~~~~~f~~Al~la~~~---------------~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~---eps~vI 400 (823)
.++..++|..|+++..+. ....+++.-|+.+.+.-|-..|+-++|...|...|... +|+..|
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Q ss_pred H-------------------HhhchhhHHHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCChhhHHHhhcCCCCCCcc--
Q 037368 401 Q-------------------KFLDAQRIYNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEH-- 459 (823)
Q Consensus 401 ~-------------------kFl~~~~~~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~~~~l~~fi~~~~~~~~~-- 459 (823)
. +-.+.++-.....-|..|..+.+..-.....||..|+ +..+...++-..-+ +..
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~ 339 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE 339 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch
Q ss_pred ---cCCHHHHHHHHHh--cCCHHHHHHHHHHhCChHHH-----HHHHHHhhcCHHHHHHHHh
Q 037368 460 ---KFDVETAIRVCRA--ANYHEHAMYVAKKAGKHELY-----LKILLEDLGRYDEALQYIS 511 (823)
Q Consensus 460 ---~~d~~~ai~vl~~--~g~~~~a~~la~~~~~~~~~-----l~il~~~~~~~~~al~yl~ 511 (823)
.-.+..+..+.+. +.-.+.+..++..+..+..+ +++.+-. |++..|++.+.
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~~~A~~il~ 400 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH
No 470
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.10 E-value=1.5e+02 Score=31.70 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=50.9
Q ss_pred ceEEEEEecCCCCcceEEEEEeCCeEE-EEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEec
Q 037368 132 KITSFLVLEEAPPILLIAIGLDNGCIY-CIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 132 ~v~~va~~~d~~~~~~ia~G~~dG~V~-l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
.+..+..++||++ +|++. .|.+. -|+.-- ..+. ..-......|.+|.|++++ .+.+++..+.|+.=+..
T Consensus 146 s~~~~~r~~dG~~---vavs~-~G~~~~s~~~G~---~~w~-~~~r~~~~riq~~gf~~~~--~lw~~~~Gg~~~~s~~~ 215 (302)
T PF14870_consen 146 SINDITRSSDGRY---VAVSS-RGNFYSSWDPGQ---TTWQ-PHNRNSSRRIQSMGFSPDG--NLWMLARGGQIQFSDDP 215 (302)
T ss_dssp -EEEEEE-TTS-E---EEEET-TSSEEEEE-TT----SS-E-EEE--SSS-EEEEEE-TTS---EEEEETTTEEEEEE-T
T ss_pred eeEeEEECCCCcE---EEEEC-cccEEEEecCCC---ccce-EEccCccceehhceecCCC--CEEEEeCCcEEEEccCC
Confidence 3888889999998 88886 66665 465310 0111 1112346789999999997 34444544556655522
Q ss_pred CCC-Ccce-EEc--cCCCccceecccCCCeEEEeeCCeEEEEecC
Q 037368 211 NQP-PKRQ-FLD--NIGCSTNSVAMSDRLELIIGRPEAVYFYEVD 251 (823)
Q Consensus 211 ~~~-~~~~-~l~--~~~~~~~~~~~s~~~~liv~~~~~I~i~~~~ 251 (823)
... .... ..+ ..+..+-.+++.+++.+.+++++...+.+.+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~D 260 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTD 260 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESS
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCC
Confidence 111 0101 111 1223344567777777655444433344444
No 471
>PRK02888 nitrous-oxide reductase; Validated
Probab=70.79 E-value=36 Score=39.78 Aligned_cols=101 Identities=9% Similarity=0.070 Sum_probs=64.4
Q ss_pred CCeEEEEc-CC-----CeeeEeEeecccceeEEEEecCCCEEEEEec-CCCCcccccceeEEEEeCCCCCC--CCCCCCC
Q 037368 44 DGAVSLLD-RG-----LKFNFGFQAHSSSVLFLQQLKQRNFLVTVGE-DEQVSAQQSAVCLKVFDLDKMEP--EGTSSTS 114 (823)
Q Consensus 44 dG~i~~~d-~~-----~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~-D~~~~~~~~~~~vkvWdl~~~~~--~~~~~~~ 114 (823)
+++|.++| .+ .+.+ .+-.=..+...|.++|||++++.++. +.+ |.|.|+.+.+. +++..-.
T Consensus 295 gn~V~VID~~t~~~~~~~v~-~yIPVGKsPHGV~vSPDGkylyVanklS~t---------VSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALT-RYVPVPKNPHGVNTSPDGKYFIANGKLSPT---------VTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CCEEEEEECCccccCCcceE-EEEECCCCccceEECCCCCEEEEeCCCCCc---------EEEEEChhhhhhhhccCCcc
Confidence 45688888 44 2333 33334456778999999999876654 554 99999987532 1111000
Q ss_pred CceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc
Q 037368 115 PDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD 163 (823)
Q Consensus 115 ~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~ 163 (823)
-..+..+.+. .. ..-.+|+++|.. ..+-+.|..|.-|+.+
T Consensus 365 ~~vvaevevG--lG----PLHTaFDg~G~a---ytslf~dsqv~kwn~~ 404 (635)
T PRK02888 365 DAVVAEPELG--LG----PLHTAFDGRGNA---YTTLFLDSQIVKWNIE 404 (635)
T ss_pred ceEEEeeccC--CC----cceEEECCCCCE---EEeEeecceeEEEehH
Confidence 0123333332 22 466789999987 8888999999999864
No 472
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=70.58 E-value=2.4e+02 Score=33.80 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHhccHHHHHHHHHhcCCC
Q 037368 335 SKLDMLFKKNLYTVAINLVQSQQAD 359 (823)
Q Consensus 335 ~~i~~L~~~~~f~~Al~la~~~~~~ 359 (823)
+-++-++..++|..|+..|+++.+|
T Consensus 668 a~Vrk~i~akkYkdAf~vCrthrv~ 692 (1243)
T COG5290 668 AFVRKLIAAKKYKDAFDVCRTHRVP 692 (1243)
T ss_pred HHHHHHHHHhhhhHHHHHHHheeec
Confidence 3467777788888888888886554
No 473
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=69.20 E-value=1.7e+02 Score=31.44 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhccHHHHHHHHHhc-CC----CHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcChH----HHH--H
Q 037368 333 MESKLDMLFKKNLYTVAINLVQSQ-QA----DAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPS----YVI--Q 401 (823)
Q Consensus 333 ~~~~i~~L~~~~~f~~Al~la~~~-~~----~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~eps----~vI--~ 401 (823)
.+.-+.++-+-+.++.|++.|++. .+ -.-++.+.+..+|+.+..+.+++.|+....+.... +|- .+| +
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG~ 222 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA-DKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-CccceehhhhhhH
Confidence 344466666778999999988851 12 14468888899999999999999999988776432 221 122 2
Q ss_pred HhhchhhHHHHHHHHHHHHHcCCC-ChhHHHHHHHHHHhcCChhhHHHhhcCC
Q 037368 402 KFLDAQRIYNLTNYLEKLHEKGFA-SKDHTTLLLNCYTKLKDVEKLNMFIKGE 453 (823)
Q Consensus 402 kFl~~~~~~~L~~YL~~l~~~~~~-~~~~~~lLl~~y~kl~~~~~l~~fi~~~ 453 (823)
.++..++-+.=+.=|+...+.+.+ -+..-..|..||.++++.+....|+...
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334433333333333332221111 1222345778999999999999998754
No 474
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.19 E-value=33 Score=34.72 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 344 NLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 344 ~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
..|+.|++++..+ .+|..-||-||..+|+|++|+++|-+.+
T Consensus 90 e~YrkAlsl~p~~-------GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 90 ESYRKALSLAPNN-------GDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHhcCCCc-------cchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 4677777776543 3688899999999999999999998874
No 475
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=69.17 E-value=1.6e+02 Score=37.31 Aligned_cols=48 Identities=13% Similarity=-0.024 Sum_probs=23.7
Q ss_pred HhccHHHHHHHHHhcC-CCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 342 KKNLYTVAINLVQSQQ-ADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 342 ~~~~f~~Al~la~~~~-~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
+.++|+.|+...++.. .++. ...+...|.-+...|++++|+..|-+.+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~--~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMS--NEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCC--cHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5566666666554321 1111 0112334555666666666666665543
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.12 E-value=91 Score=34.28 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=48.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCc-ChHHHHHHhhch-------hhHHHHHHHH
Q 037368 345 LYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHL-EPSYVIQKFLDA-------QRIYNLTNYL 416 (823)
Q Consensus 345 ~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~-eps~vI~kFl~~-------~~~~~L~~YL 416 (823)
+.+.-++-.+. ++-++.+...+..+|||+..-|+++.|.+.|+++-..- ....||..+++. +.-..+..|.
T Consensus 132 ~L~~eLk~yK~-n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~ 210 (466)
T KOG0686|consen 132 KLDNELKSYKD-NLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYI 210 (466)
T ss_pred HHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHH
Confidence 33344443333 34456677888899999999999999999999952221 134788888653 3444566666
Q ss_pred HH
Q 037368 417 EK 418 (823)
Q Consensus 417 ~~ 418 (823)
.+
T Consensus 211 ~~ 212 (466)
T KOG0686|consen 211 SK 212 (466)
T ss_pred HH
Confidence 55
No 477
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.60 E-value=6.7 Score=26.01 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=22.3
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 365 EVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 365 ~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
+++...|..++..|+|++|++.|-+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456778999999999999999998874
No 478
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=68.44 E-value=9 Score=31.32 Aligned_cols=54 Identities=24% Similarity=0.393 Sum_probs=37.5
Q ss_pred HHHHHhccHHHHHHHHHh-------cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 338 DMLFKKNLYTVAINLVQS-------QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 338 ~~L~~~~~f~~Al~la~~-------~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
..+...++|+.|+...++ .+-+...+.......|.-+...|+|++|.+.|-+++
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455567777777766554 221222356677788999999999999999998874
No 479
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.17 E-value=1.7e+02 Score=31.19 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=32.2
Q ss_pred ecCCeEEEEc-C-CCeeeEeEeecccceeEEEEecCCCEEEEE
Q 037368 42 CDDGAVSLLD-R-GLKFNFGFQAHSSSVLFLQQLKQRNFLVTV 82 (823)
Q Consensus 42 s~dG~i~~~d-~-~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~ 82 (823)
+..|.|-+|| . +...+..|..|.-.--.|.+.|+|+.|+.+
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 4679999999 3 577888999887666778889999766644
No 480
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=68.07 E-value=1.6e+02 Score=30.65 Aligned_cols=128 Identities=9% Similarity=0.017 Sum_probs=64.9
Q ss_pred cCCeEEEEcCCCeeeEeEeecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEe-CCCCCCCCCCCCCCceEEEE
Q 037368 43 DDGAVSLLDRGLKFNFGFQAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFD-LDKMEPEGTSSTSPDCIGIL 121 (823)
Q Consensus 43 ~dG~i~~~d~~~~~~~~~~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWd-l~~~~~~~~~~~~~~~~~~~ 121 (823)
....+.++...+.......+ ..++.-+|++++...+....+.. .+++. ... +....+ .+
T Consensus 46 ~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~---------~~~~~~~~~--------g~~~~~-~v 105 (253)
T PF10647_consen 46 GGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGG---------VRVVRDSAS--------GTGEPV-EV 105 (253)
T ss_pred CCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCc---------eEEEEecCC--------CcceeE-Ee
Confidence 33445555544443322222 37788889998665544443332 66663 221 111111 11
Q ss_pred EeccCCCCCCceEEEEEecCCCCcceEEEEE---eCCeEEEEEcccccccccceeEE------e-cCCCCcceEEEeecC
Q 037368 122 RVFTSQFPEAKITSFLVLEEAPPILLIAIGL---DNGCIYCIKGDIARERITRFKLQ------V-DNQCSVMGLGFRVDG 191 (823)
Q Consensus 122 ~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~---~dG~V~l~~~~~~~~~~~k~~~~------~-~~~~~It~l~fs~dg 191 (823)
...... ..|++|++||||.. +|.-. .++.|.+-. +.|+.......+ . .....+++++|.+++
T Consensus 106 ~~~~~~---~~I~~l~vSpDG~R---vA~v~~~~~~~~v~va~--V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~ 177 (253)
T PF10647_consen 106 DWPGLR---GRITALRVSPDGTR---VAVVVEDGGGGRVYVAG--VVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS 177 (253)
T ss_pred cccccC---CceEEEEECCCCcE---EEEEEecCCCCeEEEEE--EEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence 111000 14999999999998 66655 245665532 223322211111 1 224689999999987
Q ss_pred CeEEEEEEc
Q 037368 192 QALQLFAVT 200 (823)
Q Consensus 192 ~~~~l~~~t 200 (823)
.++..+.
T Consensus 178 --~L~V~~~ 184 (253)
T PF10647_consen 178 --TLVVLGR 184 (253)
T ss_pred --EEEEEeC
Confidence 3444443
No 481
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=67.92 E-value=2.1e+02 Score=32.03 Aligned_cols=109 Identities=11% Similarity=0.026 Sum_probs=57.7
Q ss_pred cceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCC
Q 037368 65 SSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPP 144 (823)
Q Consensus 65 ~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~ 144 (823)
..++.+.+.+++.+++.+ .+|. + +|..+... +....-...+........ ++++.+.+++..
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~---------l-~~S~d~G~-----~~~~~~f~~~~~~~~~~~---l~~v~~~~d~~~ 341 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGG---------L-YVSKGTGL-----TEEDFDFEEADIKSRGFG---ILDVGYRSKKEA 341 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCce---------E-EEecCCCC-----cccccceeecccCCCCcc---eEEEEEcCCCcE
Confidence 578999998888877644 6663 3 44433211 000000111111111122 899999998877
Q ss_pred cceEEEEEeCCeEEEEEcccccccccceeEEe--c-CCCCcceEEEeecCCeEEEEEEcCCeE
Q 037368 145 ILLIAIGLDNGCIYCIKGDIARERITRFKLQV--D-NQCSVMGLGFRVDGQALQLFAVTPNSV 204 (823)
Q Consensus 145 ~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~--~-~~~~It~l~fs~dg~~~~l~~~t~~~V 204 (823)
+++|. +|.|..... .+....... . -..+...+.|.+++ ..+++.++++
T Consensus 342 ---~a~G~-~G~v~~s~D-----~G~tW~~~~~~~~~~~~ly~v~f~~~~---~g~~~G~~G~ 392 (398)
T PLN00033 342 ---WAAGG-SGILLRSTD-----GGKSWKRDKGADNIAANLYSVKFFDDK---KGFVLGNDGV 392 (398)
T ss_pred ---EEEEC-CCcEEEeCC-----CCcceeEccccCCCCcceeEEEEcCCC---ceEEEeCCcE
Confidence 77775 676665431 121112211 1 14567899997765 3555555553
No 482
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.19 E-value=1.4e+02 Score=30.42 Aligned_cols=111 Identities=14% Similarity=0.031 Sum_probs=60.5
Q ss_pred eEEEEecCCCEE-EEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEe---ccCCCCCCceEEEEEecCCC
Q 037368 68 LFLQQLKQRNFL-VTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRV---FTSQFPEAKITSFLVLEEAP 143 (823)
Q Consensus 68 ~~i~~~~~~~~l-~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~v~~va~~~d~~ 143 (823)
+.++|+.+.+.+ .+=|.+-+ |.-||.+-.. +. -.++..+-.++- +.+..| -..+++.+|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~---------V~a~dyd~~t--G~-~snr~~i~dlrk~~~~e~~~P----DGm~ID~eG~ 224 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYE---------VDAYDYDCPT--GD-LSNRKVIFDLRKSQPFESLEP----DGMTIDTEGN 224 (310)
T ss_pred ccccccccCcEEEEEccCceE---------EeeeecCCCc--cc-ccCcceeEEeccCCCcCCCCC----CcceEccCCc
Confidence 457777766655 44455554 7779854211 00 112222222221 111223 4455677888
Q ss_pred CcceEEEEEeCCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCC
Q 037368 144 PILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPN 202 (823)
Q Consensus 144 ~~~~ia~G~~dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~ 202 (823)
. .++.+..|+|.-++.. .+.....+.-....||+.+|-..+- .++++++..
T Consensus 225 L---~Va~~ng~~V~~~dp~----tGK~L~eiklPt~qitsccFgGkn~-d~~yvT~aa 275 (310)
T KOG4499|consen 225 L---YVATFNGGTVQKVDPT----TGKILLEIKLPTPQITSCCFGGKNL-DILYVTTAA 275 (310)
T ss_pred E---EEEEecCcEEEEECCC----CCcEEEEEEcCCCceEEEEecCCCc-cEEEEEehh
Confidence 7 7888888899887753 2333333333466799999975432 366666543
No 483
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=66.87 E-value=30 Score=41.16 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=82.6
Q ss_pred CEEEEEecCCeEEEEcCC-Ce---eeEeE-eecccceeEEEEecCCCEEEEEecCCCCcccccceeEEEEeCCCCCCCCC
Q 037368 36 GKVVIGCDDGAVSLLDRG-LK---FNFGF-QAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGT 110 (823)
Q Consensus 36 ~~l~~gs~dG~i~~~d~~-~~---~~~~~-~~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~ 110 (823)
..+.+|+.+|.|.++... +. .+..+ ..-..+|.++.+++. -+..+.-||+.. ..-...=..||..
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a-~y~rap~gSwd~e------- 617 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLA-VYGRAPSGSWDGE------- 617 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccc-cccCCCCCCCCCC-------
Confidence 468899999999999833 21 22122 222357777777652 244455666510 0000000115543
Q ss_pred CCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEeCCeEEEEEcc-cccccccceeEEecCCCCcceEEEee
Q 037368 111 SSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGD-IARERITRFKLQVDNQCSVMGLGFRV 189 (823)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~-~~~~~~~k~~~~~~~~~~It~l~fs~ 189 (823)
|.. .+... ..| |.+.++..| +..|+.+|.|.++... ..+ .++.....++...|+.+....
T Consensus 618 ----p~~--~~~~g--~lP---vrsla~~ed------~~was~gG~V~vi~~tt~~~--~~~leahqee~~~Vthm~~~~ 678 (925)
T KOG3522|consen 618 ----PNI--SIPTG--SLP---VRSLAFQED------FVWASEGGCVHVIPSTTFIR--SWDLEAHQEEAHSVTHMLYLD 678 (925)
T ss_pred ----Ccc--ccccC--Ccc---ccchhhhhc------eeeeecCCceEEEechhccc--cchhHHHHhhcceEEEEEeeC
Confidence 211 11211 345 888888877 6778889999999642 111 122222234456799999888
Q ss_pred cCCeEEEEEEcCCeEEEEEecC
Q 037368 190 DGQALQLFAVTPNSVILFSLQN 211 (823)
Q Consensus 190 dg~~~~l~~~t~~~V~~~d~~~ 211 (823)
.| ..++.++.+.++.++..+
T Consensus 679 ~g--VwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 679 NG--VWVAFASGDEERLFHTET 698 (925)
T ss_pred Cc--eEEEEcCCCEEEEecccc
Confidence 77 566666777788776654
No 484
>PRK14574 hmsH outer membrane protein; Provisional
Probab=66.64 E-value=65 Score=39.68 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcC-----hHHHHHHhhchhhH
Q 037368 335 SKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLE-----PSYVIQKFLDAQRI 409 (823)
Q Consensus 335 ~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~e-----ps~vI~kFl~~~~~ 409 (823)
+-+.++...|+++.|+..+++..-+...-.......|..+..+|+|++|+..|-+.+...- ....+..+.+.++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHhcCC----hhhHHHhhcCCCCCCcccCCHHHHHHHHHhcCCHHHHHHHHHH
Q 037368 410 YNLTNYLEKLHEKGFASKDHTTLLLNCYTKLKD----VEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAMYVAKK 485 (823)
Q Consensus 410 ~~L~~YL~~l~~~~~~~~~~~~lLl~~y~kl~~----~~~l~~fi~~~~~~~~~~~d~~~ai~vl~~~g~~~~a~~la~~ 485 (823)
..-..++.++......+... .++...+..+++ ...+++.+...+ +..=-.-.-+..+...|-..-|+.+++.
T Consensus 153 ~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P---~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 153 GVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAP---TSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCcHHHHHHHHh
Q ss_pred hCC
Q 037368 486 AGK 488 (823)
Q Consensus 486 ~~~ 488 (823)
+.+
T Consensus 229 ~p~ 231 (822)
T PRK14574 229 NPN 231 (822)
T ss_pred Ccc
No 485
>PRK11189 lipoprotein NlpI; Provisional
Probab=66.62 E-value=77 Score=33.76 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHhccHHHHHHHHHhc-CCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhCCcCh
Q 037368 339 MLFKKNLYTVAINLVQSQ-QADAAATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEP 396 (823)
Q Consensus 339 ~L~~~~~f~~Al~la~~~-~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti~~~ep 396 (823)
.+...++++.|+..-+.. .+.+. ....+...|..+...|+|++|...|-+.+. ++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-l~P 129 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLE-LDP 129 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC
Confidence 345667888777655441 22221 235566678888888888888888887753 344
No 486
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.96 E-value=1.4e+02 Score=34.13 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=37.9
Q ss_pred hHHHHHHHhccHHHHHHHHHhcCChhHHHHHHHHhCCCCCCCCcchHHHHHHHhcc
Q 037368 700 GLLYLYEKLKLYKEVIACYTQAHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGE 755 (823)
Q Consensus 700 ~~v~L~~k~g~~~~al~~~~~~~d~~~~i~~~~~~~~~~~~~~~~Lw~~ll~~~~~ 755 (823)
-...+|-+||.+.+|+..+++.++...++++|+... || ++.+-..|.+-
T Consensus 246 ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~------Dp-~~kKQ~~YiLA 294 (881)
T COG5110 246 TALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIE------DP-DYKKQCLYILA 294 (881)
T ss_pred HHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhcc------Ch-HHHHHHHHHHH
Confidence 334489999999999999999999999999999875 55 44444445443
No 487
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=65.51 E-value=57 Score=35.25 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=67.8
Q ss_pred CeEEEEEecCCCCcceEEccCCCccceecccCCCeEE-Ee-----e------CCeEEEEecCCCCccc--cccCC-----
Q 037368 202 NSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELI-IG-----R------PEAVYFYEVDGRGPCW--AFEGE----- 262 (823)
Q Consensus 202 ~~V~~~d~~~~~~~~~~l~~~~~~~~~~~~s~~~~li-v~-----~------~~~I~i~~~~g~~~~~--~~~g~----- 262 (823)
++|+++|-+.+. .+-.++ .|. ...+.+||+++.+ ++ + .|-|.+||...-.+.. .+++-
T Consensus 17 ~rv~viD~d~~k-~lGmi~-~g~-~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGK-LLGMID-TGF-LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTE-EEEEEE-EES-SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCc-EEEEee-ccc-CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 367777755432 111111 111 2234567888743 32 1 2578899976322111 12211
Q ss_pred -----eEEEEeeCcEEEEEEecCCCCccEEEEEeCCCCEEEEeccccceeEEEeec-CcEEEEEcCCeEEEEe
Q 037368 263 -----KKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHSLVVKEVSHMLCEW-GNIILVMTDKSVLCIG 329 (823)
Q Consensus 263 -----~~~i~~~~~ylv~~s~d~~~~~~~I~I~D~~~~~i~~~~~i~~v~~v~~~~-~~~~vvs~~~~v~~l~ 329 (823)
...++.++.++.+.-.- ...+|.|.|+..+...-.-.++....++... .+++.+|.||.+..+.
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~T---Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~ 163 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFT---PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVT 163 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEES---SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cccccceEEccCCcEEEEEccC---CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEE
Confidence 12344455666554321 3479999999998887777777766666533 4588888888877665
No 488
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=65.48 E-value=38 Score=40.26 Aligned_cols=107 Identities=19% Similarity=0.307 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHhhcCHHHHHHHHhc--CChHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCcccCCCCCccc
Q 037368 488 KHELYLKILLEDLGRYDEALQYISS--LDPSQAGV---TVKEYGKILIEHKPMETIDILLRLCTEDGESTKRGASSSTYM 562 (823)
Q Consensus 488 ~~~~~l~il~~~~~~~~~al~yl~~--l~~~~~~~---~i~k~~~~Ll~~~p~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 562 (823)
+.-.|..+|+-- |+|+.|++||-+ ....++.. .+..|| ||...+....+++..... .+
T Consensus 260 ~p~~Yf~~LlLt-gqFE~AI~~L~~~~~~~~dAVH~AIaL~~~g--LL~~~~~~~~~lls~~~~---~~----------- 322 (613)
T PF04097_consen 260 NPLLYFQVLLLT-GQFEAAIEFLYRNEFNRVDAVHFAIALAYYG--LLRVSDSSSAPLLSVDPG---DP----------- 322 (613)
T ss_dssp ----HHHHHHHT-T-HHHHHHHHHT--T-HHHHHHHHHHHHHTT------------------------------------
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhhccCcccHHHHHHHHHHcC--CCCCCCccccceeeecCC---CC-----------
Confidence 344567777765 999999999998 43334333 255566 555544433333322110 00
Q ss_pred CCCCCHHHHHhhhcc-----CcHHHHHHHHHHHhhcCCCCchhhHHHHHHHHhccc
Q 037368 563 SMLPSPVDFLNIFVH-----HPESLMDFLEKYTNKVKDSPAQVEIHNTLLELYLSY 613 (823)
Q Consensus 563 ~~~~~~~~~~~~f~~-----~~~~~~~yLe~~i~~~~~~~~~~~~~n~llelyl~~ 613 (823)
..+|..+++..++. +|..+..|+- ++...++......+|..+-||-++.
T Consensus 323 -~~ln~arLI~~Y~~~F~~td~~~Al~Y~~-li~~~~~~~~~~l~~~~l~eLvlet 376 (613)
T PF04097_consen 323 -PPLNFARLIGQYTRSFEITDPREALQYLY-LICLFKDPEQRNLFHECLRELVLET 376 (613)
T ss_dssp -----HHHHHHHHHHTTTTT-HHHHHHHHH-GGGGS-SCCHHHHHHHHHHHHHHHH
T ss_pred -CCcCHHHHHHHHHHHHhccCHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHcc
Confidence 12566666665553 5888888874 4443333223456777777776663
No 489
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.19 E-value=1.3e+02 Score=36.38 Aligned_cols=110 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred EEEecCCeEEEEcCCCeeeEeEe-----------------------ecccceeEEEEecCCCEEEEEecCCCCcccccce
Q 037368 39 VIGCDDGAVSLLDRGLKFNFGFQ-----------------------AHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAV 95 (823)
Q Consensus 39 ~~gs~dG~i~~~d~~~~~~~~~~-----------------------~H~~~V~~i~~~~~~~~l~s~s~D~~~~~~~~~~ 95 (823)
++...||.+++||.+...+.+.. .-.-.|..|.++|+|.+||-+|..|
T Consensus 36 Ll~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~--------- 106 (717)
T PF10168_consen 36 LLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG--------- 106 (717)
T ss_pred eEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc---------
Q ss_pred eEEEEeCCC-CCCCCCCCCCCc--eEEEEEeccC---CCCCCceEEEEEecCC---CCcceEEEEEeCCeEEEEE
Q 037368 96 CLKVFDLDK-MEPEGTSSTSPD--CIGILRVFTS---QFPEAKITSFLVLEEA---PPILLIAIGLDNGCIYCIK 161 (823)
Q Consensus 96 ~vkvWdl~~-~~~~~~~~~~~~--~~~~~~~~~~---~~p~~~v~~va~~~d~---~~~~~ia~G~~dG~V~l~~ 161 (823)
|.|-.+-+ ....+...+.+. ..+++.+... ..+...|..+.|||.+ .. +++=+.|+++++|+
T Consensus 107 -v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~---l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 107 -VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH---LVVLTSDNTLRLYD 177 (717)
T ss_pred -EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe---EEEEecCCEEEEEe
No 490
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.89 E-value=1.7e+02 Score=29.92 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHH
Q 037368 348 VAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMSQYIL 389 (823)
Q Consensus 348 ~Al~la~~~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ 389 (823)
.+-+.|...++|+. .+....|-|++..++|++|.+....
T Consensus 65 ~~~~Fa~~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L~~ 103 (226)
T PF13934_consen 65 LAESFARAFGIPPK---YIKFIQGFWLLDHGDFEEALELLSH 103 (226)
T ss_pred HHHHHHHHhCCCHH---HHHHHHHHHHhChHhHHHHHHHhCC
Confidence 56667777777754 3444568888888999999887644
No 491
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=63.66 E-value=57 Score=28.50 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHhc--CCCH-HHHHHHHHHHhhhhccCCCHHHHHHHHHHHh
Q 037368 334 ESKLDMLFKKNLYTVAINLVQSQ--QADA-AATAEVLRKYGDHLYSKQDYDEAMSQYILTI 391 (823)
Q Consensus 334 ~~~i~~L~~~~~f~~Al~la~~~--~~~~-~~~~~I~~~y~d~L~~k~~y~~A~~~y~~ti 391 (823)
-.....+.+.++|+.|++..+.. ..|. ..........|.-++..|+|++|++.|-+.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44567788899999999987652 1121 1124566678999999999999999988764
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.50 E-value=13 Score=43.95 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=73.1
Q ss_pred eEEEEEecCCCCcceEEEEEeCCeEEEEEccc--ccccccceeEEecCCCCcceEEEeecCCeEEEEEEcCCeEEEEEec
Q 037368 133 ITSFLVLEEAPPILLIAIGLDNGCIYCIKGDI--ARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVTPNSVILFSLQ 210 (823)
Q Consensus 133 v~~va~~~d~~~~~~ia~G~~dG~V~l~~~~~--~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t~~~V~~~d~~ 210 (823)
+.++++++. . +..|+-||++-.|-+-. +. -+...+.+..+..||.+++|..| .+++++++.|.++..+
T Consensus 584 v~~l~~ss~--S---lgagl~dgt~a~y~rap~gSw-d~ep~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~t 653 (925)
T KOG3522|consen 584 VKLLLFSSG--S---LGAGLIDGTLAVYGRAPSGSW-DGEPNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPST 653 (925)
T ss_pred hhhhhcccc--c---cccCccCCccccccCCCCCCC-CCCCccccccCCccccchhhhhc----eeeeecCCceEEEech
Confidence 777777764 4 66788899888773211 11 12223344566789999999764 5777777889999887
Q ss_pred CCCC--cceEEccCCCccceecccCCCeEEE-eeCCeEEEEecCCCC
Q 037368 211 NQPP--KRQFLDNIGCSTNSVAMSDRLELII-GRPEAVYFYEVDGRG 254 (823)
Q Consensus 211 ~~~~--~~~~l~~~~~~~~~~~~s~~~~liv-~~~~~I~i~~~~g~~ 254 (823)
+... .......++..++++.....|-+++ +.++.++++..++-+
T Consensus 654 t~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 654 TFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLW 700 (925)
T ss_pred hccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccC
Confidence 5431 1122235677889988888887654 667778777665443
No 493
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.00 E-value=75 Score=35.08 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=32.6
Q ss_pred HhccHHHHHHHHHh-----cCCCHHHHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q 037368 342 KKNLYTVAINLVQS-----QQADAAATAEVLRKYGDHLYSKQDYDEAMSQYILT 390 (823)
Q Consensus 342 ~~~~f~~Al~la~~-----~~~~~~~~~~I~~~y~d~L~~k~~y~~A~~~y~~t 390 (823)
+++.|..|++.-+. ..+.+.++-.|..-.|--+++.|.|+.|+.-|-.+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~ 302 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHC 302 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHH
Confidence 44556666654443 12335666777777788888899999998877655
No 494
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=62.76 E-value=2.4 Score=48.22 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=66.7
Q ss_pred eEEEeeCCCEEEEEecCCeEEEEc-CCCeeeEeEeecccceeEEEEec-CCCEEEEEecCCCCcccccceeEEEEeC-CC
Q 037368 28 ITCCSSGRGKVVIGCDDGAVSLLD-RGLKFNFGFQAHSSSVLFLQQLK-QRNFLVTVGEDEQVSAQQSAVCLKVFDL-DK 104 (823)
Q Consensus 28 is~~~~~~~~l~~gs~dG~i~~~d-~~~~~~~~~~~H~~~V~~i~~~~-~~~~l~s~s~D~~~~~~~~~~~vkvWdl-~~ 104 (823)
.-|+--....+.+|.+...+++.| +..... .-.--+..|..+.++| .++++++-+ ||. |.+||. .+
T Consensus 159 s~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~~-dg~---------iAiwD~~rn 227 (783)
T KOG1008|consen 159 SVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSNS-DGD---------IAIWDTYRN 227 (783)
T ss_pred ccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceeccc-cCc---------eeeccchhh
Confidence 344443345668888888999999 422111 1111245677788899 889999887 565 999994 33
Q ss_pred CCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCcceEEEEEe-CCeEEEEEcc
Q 037368 105 MEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPILLIAIGLD-NGCIYCIKGD 163 (823)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~~~ia~G~~-dG~V~l~~~~ 163 (823)
.+ +| ++++.-..++.| ..+..++++|-.. ..+|+-+. .++|++++..
T Consensus 228 ie-------np--l~~i~~~~N~~~-~~l~~~aycPtrt--glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 228 IE-------NP--LQIILRNENKKP-KQLFALAYCPTRT--GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hc-------cH--HHHHhhCCCCcc-cceeeEEeccCCc--chhhhhccCcceEEEeccc
Confidence 22 23 112111122333 3489999999542 22555544 4677788653
No 495
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.69 E-value=3.3e+02 Score=32.54 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=33.9
Q ss_pred cChHHHHHHHHHhccHHHHHHHHHhcCCCHHHHHHHHHHHhhhhccC
Q 037368 331 KDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSK 377 (823)
Q Consensus 331 ~~~~~~i~~L~~~~~f~~Al~la~~~~~~~~~~~~I~~~y~d~L~~k 377 (823)
.++.-.++-|+.++.|.+|+++|+-.++|...-+-|+...+.+.+++
T Consensus 438 l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~ 484 (829)
T KOG2280|consen 438 LSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQ 484 (829)
T ss_pred hchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhc
Confidence 34455688889999999999999987776432256777777666655
No 496
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=61.74 E-value=15 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=20.9
Q ss_pred eCCCEEEEEecCCeEEEEc-CCCeeeE
Q 037368 33 SGRGKVVIGCDDGAVSLLD-RGLKFNF 58 (823)
Q Consensus 33 ~~~~~l~~gs~dG~i~~~d-~~~~~~~ 58 (823)
..++.+++|+.+|.++.+| .+|+.+.
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEEE
Confidence 3456789999999999999 6787653
No 497
>PHA02713 hypothetical protein; Provisional
Probab=59.71 E-value=2e+02 Score=33.80 Aligned_cols=26 Identities=4% Similarity=0.243 Sum_probs=16.7
Q ss_pred CCCEEEEEecCCCCcccccceeEEEEeCCC
Q 037368 75 QRNFLVTVGEDEQVSAQQSAVCLKVFDLDK 104 (823)
Q Consensus 75 ~~~~l~s~s~D~~~~~~~~~~~vkvWdl~~ 104 (823)
+|.+.+.||.++...... |-.||..+
T Consensus 351 ~g~IYviGG~~~~~~~~s----ve~Ydp~~ 376 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERT----IECYTMGD 376 (557)
T ss_pred CCEEEEECCcCCCCCCce----EEEEECCC
Confidence 677778888776422122 77888763
No 498
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.20 E-value=22 Score=37.31 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=39.5
Q ss_pred HHHHHHhccHHHHHHHHHhc--CCCHH-HHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q 037368 337 LDMLFKKNLYTVAINLVQSQ--QADAA-ATAEVLRKYGDHLYSKQDYDEAMSQYILT 390 (823)
Q Consensus 337 i~~L~~~~~f~~Al~la~~~--~~~~~-~~~~I~~~y~d~L~~k~~y~~A~~~y~~t 390 (823)
+.+++++++|+.|+...+.. ..|.+ .....+-..|+.+|.+|+|++|+..|.+.
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44557789999999877652 23322 23456677799999999999999887753
No 499
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=59.19 E-value=2.9e+02 Score=30.67 Aligned_cols=192 Identities=11% Similarity=0.076 Sum_probs=106.1
Q ss_pred eeEEEEecCCC-EEEEEecCCCCcccccceeEEEEeCCCCCCCCCCCCCCceEEEEEeccCCCCCCceEEEEEecCCCCc
Q 037368 67 VLFLQQLKQRN-FLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGILRVFTSQFPEAKITSFLVLEEAPPI 145 (823)
Q Consensus 67 V~~i~~~~~~~-~l~s~s~D~~~~~~~~~~~vkvWdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~va~~~d~~~~ 145 (823)
-..+.+++.++ ..++...++. |.+.|.... .+++++.... . ...++++|++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~---------v~vid~~~~----------~~~~~~~vG~--~----P~~~~~~~~~~~- 129 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNT---------VSVIDTATN----------TVLGSIPVGL--G----PVGLAVDPDGKY- 129 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCe---------EEEEcCccc----------ceeeEeeecc--C----CceEEECCCCCE-
Confidence 35677777777 5566666665 889886532 2444444321 2 588999999876
Q ss_pred ceEEEEEe---CCeEEEEEcccccccccceeEEecCCCCcceEEEeecCCeEEEEEEc--CCeEEEEEecCCCCc-ceE-
Q 037368 146 LLIAIGLD---NGCIYCIKGDIARERITRFKLQVDNQCSVMGLGFRVDGQALQLFAVT--PNSVILFSLQNQPPK-RQF- 218 (823)
Q Consensus 146 ~~ia~G~~---dG~V~l~~~~~~~~~~~k~~~~~~~~~~It~l~fs~dg~~~~l~~~t--~~~V~~~d~~~~~~~-~~~- 218 (823)
+-++-. +++|.+.+.. ..........+..| .+++++|+| ..+++++ ++.|.+++..+.... ...
T Consensus 130 --vYV~n~~~~~~~vsvid~~----t~~~~~~~~vG~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 130 --VYVANAGNGNNTVSVIDAA----TNKVTATIPVGNTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred --EEEEecccCCceEEEEeCC----CCeEEEEEecCCCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccc
Confidence 555544 5777777653 11112223334456 999999999 4677776 566889986553211 000
Q ss_pred -EccCCCccceecccCCCeEE-EeeC----CeEEEEecCCCCcc---ccccC---CeEEEEeeCcEEEEEEecCCCCccE
Q 037368 219 -LDNIGCSTNSVAMSDRLELI-IGRP----EAVYFYEVDGRGPC---WAFEG---EKKLLGWFRGYLLCVIADQRNSKNI 286 (823)
Q Consensus 219 -l~~~~~~~~~~~~s~~~~li-v~~~----~~I~i~~~~g~~~~---~~~~g---~~~~i~~~~~ylv~~s~d~~~~~~~ 286 (823)
.-..+..+.-+.++|+|..+ +.-. ..+...+....... ...+. .-..+.|.+.++.+... ..++
T Consensus 201 ~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~----~~~~ 276 (381)
T COG3391 201 SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS----QGGT 276 (381)
T ss_pred cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec----CCCe
Confidence 01122233446778888743 3322 25555655422111 01111 11244555665555532 2367
Q ss_pred EEEEeCCCCEE
Q 037368 287 FNVYDLKNRLI 297 (823)
Q Consensus 287 I~I~D~~~~~i 297 (823)
+.+.|..+..+
T Consensus 277 V~vid~~~~~v 287 (381)
T COG3391 277 VSVIDGATDRV 287 (381)
T ss_pred EEEEeCCCCce
Confidence 88888766443
No 500
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.14 E-value=4.2e+02 Score=32.56 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=48.5
Q ss_pred eEEEEEecCC-CCcceEEEEEeCCeEEEEEcccc-cccccceeEEecCCCCc----------ceEEEeecCCeEEEEEEc
Q 037368 133 ITSFLVLEEA-PPILLIAIGLDNGCIYCIKGDIA-RERITRFKLQVDNQCSV----------MGLGFRVDGQALQLFAVT 200 (823)
Q Consensus 133 v~~va~~~d~-~~~~~ia~G~~dG~V~l~~~~~~-~~~~~k~~~~~~~~~~I----------t~l~fs~dg~~~~l~~~t 200 (823)
...|+|+|.. .. +|+--..|.--+|+..-. +.+..+.+......|.| ..|.|.++. ..|.+++
T Consensus 148 ~aDv~FnP~~~~q---~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~--~~lLv~~ 222 (765)
T PF10214_consen 148 HADVAFNPWDQRQ---FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS--NRLLVCN 222 (765)
T ss_pred cceEEeccCccce---EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC--CEEEEEc
Confidence 8889999854 46 999999999999986210 11111122111112222 366776654 4688888
Q ss_pred CCeEEEEEecCCC
Q 037368 201 PNSVILFSLQNQP 213 (823)
Q Consensus 201 ~~~V~~~d~~~~~ 213 (823)
...+.++|+.+..
T Consensus 223 r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 223 RSKLMLIDFESNW 235 (765)
T ss_pred CCceEEEECCCCC
Confidence 8899999998654
Done!