BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037371
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYL 42
SL++LP+ I NL +L LDLS +T LP EL + +L+Y
Sbjct: 258 SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGF 61
L L L+ ++T LP E+K L LR L+L H R L+ +P +L S F
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 4 SKLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQL 57
++PSG+SN +L+ + LS +TG +P+ + LE L L L + F IP +L
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 4 SKLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQL 57
++PSG+SN +L+ + LS +TG +P+ + LE L L L + F IP +L
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 13 LVSLHHLDLSRTNITGLPQELKALEKLR--YLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
L +++HLDLS ++TG + AL L+ YLN+ + + IIPP L+ S+ ++ L
Sbjct: 498 LRNVNHLDLSHNSLTG--DSMDALSHLKGLYLNMA-SNNIRIIPPHLLPALSQQSIINL 553
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 3 LSKLPSGISNLVSLHHLDLSRTNITG-LPQELKALEKLRYLNLDHTRFLSIIPPQLIS 59
+ +P I+ L LH+L ++ TN++G +P L ++ L L+ + +PP + S
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 11 SNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
S+L SL HLDLS ++ L K L L +LNL + ++ L S +KL++LR+
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 9 GISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVL 67
S+L SL HLDLS ++ L K L L +LNL + ++ L S +KL++L
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 128
Query: 68 RLLSRGRWSVLEEEE 82
R+ + ++ ++ ++
Sbjct: 129 RVGNMDTFTKIQRKD 143
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI---IPPQL 57
SL K + L +L ++D+S+ + +P+ + EK++YLNL TR S+ IP L
Sbjct: 375 SLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTL 433
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 12 NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
+L SL HLDLS +++ L L L+YLNL + ++ L + L+ LR+
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHT--RFLSIIPPQ 56
L +L LD+SR +P + EK+R+LNL T R + PQ
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 12 NLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRL 69
+L SL HLDLS +++ L L L+YLNL + ++ L + L+ LR+
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHT--RFLSIIPPQ 56
L +L LD+SR +P + EK+R+LNL T R + PQ
Sbjct: 412 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 457
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV 66
SL HLD+ +T LP EL AL L Y+N D+ + + P+L + L V
Sbjct: 120 ASLKHLDVDNNQLTXLP-ELPAL--LEYINADNNQLTXL--PELPTSLEVLSV 167
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS-- 59
L +LP L L L+R + LP + +L +LR L++ L+ +P L S
Sbjct: 115 GLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 60 ------GFSKLEVLRL 69
G L+ LRL
Sbjct: 175 ASGEHQGLVNLQSLRL 190
>pdb|2I4T|A Chain A, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
pdb|2I4T|B Chain B, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
pdb|2I4T|C Chain C, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Imm-a
Length = 236
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 111 RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170
R+ L + +L+ PKLV+ + + GTY P +V+ + L S + ++
Sbjct: 24 RAKLIAETYLENPKLVNNVRGIQGYTGTYKGKPISVMG-------HGMGLPSICIYAEEL 76
Query: 171 DSTEEVKKLFRNG 183
ST +VK + R G
Sbjct: 77 YSTYKVKTIIRVG 89
>pdb|1Z33|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase
pdb|1Z34|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With
2-Fluoro-2'-Deoxyadenosine
pdb|1Z35|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With
2-Fluoroadenosine
pdb|1Z36|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Formycin A
pdb|1Z37|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Adenosine
pdb|1Z38|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With Inosine
pdb|1Z39|A Chain A, Crystal Structure Of Trichomonas Vaginalis Purine
Nucleoside Phosphorylase Complexed With 2'-Deoxyinosine
Length = 235
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 111 RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170
R+ L + +L+ PKLV+ + + GTY P +V+ + L S + ++
Sbjct: 24 RAKLIAETYLENPKLVNNVRGIQGYTGTYKGKPISVMG-------HGMGLPSICIYAEEL 76
Query: 171 DSTEEVKKLFRNG 183
ST +VK + R G
Sbjct: 77 YSTYKVKTIIRVG 89
>pdb|2ISC|A Chain A, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|B Chain B, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|C Chain C, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|D Chain D, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|E Chain E, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
pdb|2ISC|F Chain F, Crystal Stucture Of Purine Nucleoside Phosphorylase From
Trichomonas Vaginalis With Dadme-Imm-A
Length = 239
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 111 RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170
R+ L + +L+ PKLV+ + + GTY P +V+ + L S + ++
Sbjct: 24 RAKLIAETYLENPKLVNNVRGIQGYTGTYKGKPISVMG-------HGMGLPSICIYAEEL 76
Query: 171 DSTEEVKKLFRNG 183
ST +VK + R G
Sbjct: 77 YSTYKVKTIIRVG 89
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 17/164 (10%)
Query: 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIP------PQL----ISGFSK-- 63
L LDL+ T++ GLP +K L L+ L L F + P L I G K
Sbjct: 277 LQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKL 336
Query: 64 -LEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK--FL 120
L V L G L+ + D L +L L HL L+ S L +Q F
Sbjct: 337 HLGVGCLEKLGNLQTLDLSHNDIEASDCCSL--QLKNLSHLQTLNLSHNEPLGLQSQAFK 394
Query: 121 KYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSK 164
+ P+L + + + PF LH + NL L +S
Sbjct: 395 ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN 438
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 13 LVSLHHLDLSRTNITGLP--QELKALEKLRYLNLDHTRF--LSIIP 54
+ SL HLDLS + LP +E L KL +L L +F L ++P
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,998,711
Number of Sequences: 62578
Number of extensions: 393551
Number of successful extensions: 1031
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 53
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)