Query 037371
Match_columns 330
No_of_seqs 152 out of 2177
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 7.2E-20 1.6E-24 187.2 11.7 187 5-220 155-345 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.8E-19 3.8E-24 184.3 10.9 245 5-278 179-439 (968)
3 KOG4194 Membrane glycoprotein 99.8 1.5E-19 3.3E-24 164.0 0.8 248 1-285 159-433 (873)
4 PLN03210 Resistant to P. syrin 99.7 7.4E-18 1.6E-22 173.8 13.3 238 2-285 622-911 (1153)
5 KOG4194 Membrane glycoprotein 99.7 3E-19 6.6E-24 162.1 1.6 257 1-287 135-411 (873)
6 KOG0444 Cytoskeletal regulator 99.7 3.7E-20 8E-25 169.3 -4.8 188 5-222 94-283 (1255)
7 PLN03210 Resistant to P. syrin 99.7 2.6E-17 5.7E-22 169.7 13.6 261 2-303 600-906 (1153)
8 KOG0444 Cytoskeletal regulator 99.7 3.4E-19 7.4E-24 163.1 -4.1 254 1-299 113-371 (1255)
9 KOG4658 Apoptotic ATPase [Sign 99.7 4.8E-17 1E-21 160.9 6.3 290 4-318 585-883 (889)
10 KOG0472 Leucine-rich repeat pr 99.6 7.2E-18 1.6E-22 147.1 -9.2 252 1-299 55-306 (565)
11 KOG4237 Extracellular matrix p 99.5 1.5E-15 3.3E-20 132.4 -1.5 216 1-253 77-356 (498)
12 PRK15387 E3 ubiquitin-protein 99.5 1.1E-13 2.5E-18 134.6 9.7 64 1-74 211-274 (788)
13 KOG0472 Leucine-rich repeat pr 99.4 1.7E-15 3.7E-20 132.4 -5.6 228 1-277 78-307 (565)
14 KOG0618 Serine/threonine phosp 99.4 3.1E-15 6.8E-20 142.7 -5.2 125 141-289 371-518 (1081)
15 KOG0618 Serine/threonine phosp 99.4 3.2E-15 6.9E-20 142.6 -6.3 211 1-222 251-491 (1081)
16 PRK15370 E3 ubiquitin-protein 99.4 6.6E-13 1.4E-17 129.8 6.8 217 2-286 189-406 (754)
17 KOG0617 Ras suppressor protein 99.4 1.1E-14 2.4E-19 113.6 -4.6 161 10-224 29-190 (264)
18 KOG0617 Ras suppressor protein 99.3 2.7E-14 5.9E-19 111.4 -4.3 99 1-115 43-141 (264)
19 cd00116 LRR_RI Leucine-rich re 99.3 2.3E-13 5.1E-18 121.9 0.7 241 6-277 15-288 (319)
20 PRK15370 E3 ubiquitin-protein 99.3 1.3E-12 2.8E-17 127.8 5.3 214 1-278 209-426 (754)
21 cd00116 LRR_RI Leucine-rich re 99.3 2.7E-13 5.8E-18 121.5 0.5 244 5-276 42-316 (319)
22 PRK15387 E3 ubiquitin-protein 99.3 6.8E-12 1.5E-16 122.4 9.2 214 1-278 232-456 (788)
23 KOG4237 Extracellular matrix p 99.3 1.6E-13 3.5E-18 119.9 -2.4 246 2-283 57-337 (498)
24 KOG4658 Apoptotic ATPase [Sign 99.1 2.6E-11 5.6E-16 120.6 2.9 62 10-73 567-629 (889)
25 KOG3207 Beta-tubulin folding c 99.0 3.9E-11 8.4E-16 106.4 -1.2 209 33-274 117-333 (505)
26 KOG3207 Beta-tubulin folding c 99.0 9.1E-11 2E-15 104.1 0.5 188 11-222 118-316 (505)
27 KOG2120 SCF ubiquitin ligase, 98.9 2E-11 4.3E-16 103.4 -5.3 223 16-279 138-375 (419)
28 PF14580 LRR_9: Leucine-rich r 98.9 3.3E-10 7.1E-15 91.4 -0.1 105 9-134 14-120 (175)
29 PF14580 LRR_9: Leucine-rich r 98.8 1.3E-09 2.9E-14 87.8 2.0 69 25-114 8-77 (175)
30 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 93.1 0.1 216 10-254 178-410 (490)
31 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 69.4 3.3 60 14-74 1-61 (61)
32 KOG2120 SCF ubiquitin ligase, 98.8 3.6E-10 7.7E-15 95.9 -3.7 183 38-254 186-374 (419)
33 KOG1909 Ran GTPase-activating 98.7 2E-09 4.3E-14 93.3 0.4 118 149-277 181-308 (382)
34 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.2E-13 94.8 4.6 185 7-224 109-294 (394)
35 KOG1909 Ran GTPase-activating 98.6 6.7E-09 1.5E-13 90.0 0.2 230 9-254 53-309 (382)
36 KOG0532 Leucine-rich repeat (L 98.6 2.2E-09 4.9E-14 98.4 -3.3 92 3-113 110-201 (722)
37 PLN03150 hypothetical protein; 98.6 1E-07 2.2E-12 92.8 7.5 84 15-114 419-503 (623)
38 KOG0532 Leucine-rich repeat (L 98.6 1.2E-08 2.6E-13 93.7 -0.0 182 1-217 85-270 (722)
39 KOG4341 F-box protein containi 98.5 3.6E-09 7.8E-14 93.7 -4.3 115 151-282 292-416 (483)
40 KOG0531 Protein phosphatase 1, 98.4 2E-08 4.4E-13 93.3 -2.0 179 8-222 89-270 (414)
41 COG4886 Leucine-rich repeat (L 98.4 3.5E-07 7.5E-12 84.6 6.2 189 18-254 97-288 (394)
42 KOG1259 Nischarin, modulator o 98.4 3.7E-08 8E-13 84.0 -0.5 133 10-166 280-412 (490)
43 KOG2982 Uncharacterized conser 98.4 5.3E-08 1.1E-12 82.9 -0.3 68 183-261 197-267 (418)
44 KOG4341 F-box protein containi 98.4 2E-08 4.3E-13 89.1 -3.0 249 10-288 160-447 (483)
45 PF13855 LRR_8: Leucine rich r 98.3 1.2E-07 2.6E-12 62.8 0.8 60 37-112 1-60 (61)
46 PLN03150 hypothetical protein; 98.3 7.2E-07 1.6E-11 87.0 6.1 68 6-74 434-502 (623)
47 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.3E-11 52.6 3.3 40 14-54 1-40 (44)
48 KOG2982 Uncharacterized conser 98.1 1.5E-06 3.3E-11 74.2 1.6 214 37-285 45-267 (418)
49 KOG0531 Protein phosphatase 1, 98.0 2.6E-07 5.6E-12 85.9 -4.2 174 12-222 70-247 (414)
50 KOG1859 Leucine-rich repeat pr 97.9 4.4E-07 9.6E-12 86.0 -4.9 99 1-119 174-272 (1096)
51 KOG3665 ZYG-1-like serine/thre 97.8 5.3E-06 1.2E-10 81.1 0.9 135 14-166 122-263 (699)
52 PF12799 LRR_4: Leucine Rich r 97.8 3.3E-05 7.1E-10 47.2 3.5 39 185-223 1-40 (44)
53 COG5238 RNA1 Ran GTPase-activa 97.8 9.7E-06 2.1E-10 68.6 1.2 126 33-166 88-227 (388)
54 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3.1E-11 82.6 -4.6 87 148-254 204-290 (1096)
55 KOG3665 ZYG-1-like serine/thre 97.7 6.7E-06 1.5E-10 80.4 -0.7 159 101-279 122-287 (699)
56 KOG1644 U2-associated snRNP A' 97.7 7.3E-05 1.6E-09 60.6 4.9 92 146-254 57-151 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.5 5.6E-05 1.2E-09 64.1 2.2 250 9-282 25-317 (388)
58 PRK15386 type III secretion pr 97.4 0.00073 1.6E-08 61.7 8.1 56 11-72 49-104 (426)
59 KOG1644 U2-associated snRNP A' 97.3 0.00041 8.9E-09 56.4 5.4 98 17-134 22-120 (233)
60 KOG2739 Leucine-rich acidic nu 97.2 9.8E-05 2.1E-09 62.2 0.9 90 8-113 37-128 (260)
61 KOG1947 Leucine rich repeat pr 97.1 5.2E-05 1.1E-09 71.7 -2.0 38 245-282 403-442 (482)
62 KOG4579 Leucine-rich repeat (L 97.1 0.00013 2.8E-09 55.6 -0.1 87 14-117 27-116 (177)
63 KOG4579 Leucine-rich repeat (L 97.0 9.5E-05 2.1E-09 56.4 -1.1 91 9-117 48-139 (177)
64 KOG2123 Uncharacterized conser 96.9 5.6E-05 1.2E-09 64.3 -3.3 82 13-112 18-99 (388)
65 KOG2123 Uncharacterized conser 96.7 7.1E-05 1.5E-09 63.7 -4.3 103 34-159 16-123 (388)
66 PRK15386 type III secretion pr 96.6 0.0068 1.5E-07 55.5 7.3 14 61-74 51-64 (426)
67 KOG1947 Leucine rich repeat pr 96.5 0.00051 1.1E-08 65.0 -0.6 174 12-219 186-374 (482)
68 KOG2739 Leucine-rich acidic nu 96.5 0.00041 9E-09 58.5 -1.2 117 28-161 34-151 (260)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0015 3.3E-08 33.2 0.5 21 15-35 1-21 (22)
70 KOG3864 Uncharacterized conser 95.3 0.0017 3.8E-08 52.8 -2.4 65 145-216 117-185 (221)
71 PF13504 LRR_7: Leucine rich r 94.7 0.018 3.9E-07 27.1 1.2 16 15-30 2-17 (17)
72 KOG3864 Uncharacterized conser 94.6 0.0079 1.7E-07 49.1 -0.3 82 62-160 101-183 (221)
73 PF13306 LRR_5: Leucine rich r 93.2 0.61 1.3E-05 35.2 7.9 13 203-215 54-66 (129)
74 PF13306 LRR_5: Leucine rich r 92.3 0.2 4.4E-06 37.9 4.0 86 5-109 2-89 (129)
75 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.4E-06 26.7 2.1 19 14-32 2-20 (26)
76 smart00370 LRR Leucine-rich re 91.9 0.16 3.4E-06 26.7 2.1 19 14-32 2-20 (26)
77 smart00367 LRR_CC Leucine-rich 85.0 0.51 1.1E-05 24.8 1.1 17 266-282 1-17 (26)
78 KOG0473 Leucine-rich repeat pr 84.2 0.032 6.9E-07 46.7 -5.7 93 3-113 30-123 (326)
79 PF13516 LRR_6: Leucine Rich r 84.2 0.66 1.4E-05 23.7 1.3 13 62-74 2-14 (24)
80 smart00364 LRR_BAC Leucine-ric 77.5 1.6 3.4E-05 23.0 1.3 18 14-31 2-19 (26)
81 smart00365 LRR_SD22 Leucine-ri 72.1 3 6.6E-05 22.0 1.5 15 14-28 2-16 (26)
82 KOG0473 Leucine-rich repeat pr 71.8 0.31 6.8E-06 41.0 -3.5 65 8-74 59-123 (326)
83 smart00368 LRR_RI Leucine rich 57.7 10 0.00023 20.1 1.9 13 62-74 2-14 (28)
84 KOG3763 mRNA export factor TAP 54.3 11 0.00023 36.0 2.6 26 304-329 557-582 (585)
85 KOG3763 mRNA export factor TAP 53.1 5.9 0.00013 37.7 0.8 80 182-273 215-307 (585)
86 KOG4308 LRR-containing protein 49.9 0.58 1.3E-05 44.3 -6.4 173 9-199 110-304 (478)
87 KOG4308 LRR-containing protein 24.1 8.8 0.00019 36.5 -3.1 68 7-74 165-245 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=7.2e-20 Score=187.23 Aligned_cols=187 Identities=18% Similarity=0.208 Sum_probs=99.8
Q ss_pred cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG 83 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (330)
.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l--------- 224 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL--------- 224 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc---------
Confidence 45666666666666666666655 56666666666666666666665556654 66666666666666665
Q ss_pred ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEc
Q 037371 84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGS 162 (330)
Q Consensus 84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (330)
....+..++++++|++|++++|..... +......+.+|+.|++ ++.. .......+..+++|+.|+++.
T Consensus 225 ------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 ------SGEIPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKL---SGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred ------CCcCChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCee---eccCchhHhhccCcCEEECcC
Confidence 334555666666666666666544321 1111122344555555 2211 222333455566666666664
Q ss_pred cCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccc
Q 037371 163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTME 220 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~ 220 (330)
|.+....+.. ...+++|++|++++|.+.. +.++..+++|+.|++++|.+.
T Consensus 294 n~l~~~~p~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 294 NSLSGEIPEL--------VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred CeeccCCChh--------HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence 4443222211 1344555555555553322 223455555555555555444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.8e-19 Score=184.35 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=169.1
Q ss_pred cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG 83 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (330)
.+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l--------- 248 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL--------- 248 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee---------
Confidence 68889999999999999999887 78999999999999999999888888887 99999999999999988
Q ss_pred ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEc
Q 037371 84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGS 162 (330)
Q Consensus 84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (330)
....+..++++++|+.|++++|..... +........+|++|++ ++.. .......+..+++|+.|+++.
T Consensus 249 ------~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 249 ------TGPIPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSL---SGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred ------ccccChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCee---ccCCChhHcCCCCCcEEECCC
Confidence 446788899999999999998865421 1111123456788887 4332 344445677888888888886
Q ss_pred cCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccc-------c---
Q 037371 163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLS-------D--- 230 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-------~--- 230 (330)
|.+....+.. ...+++|+.|++++|.+.. +..++.+++|+.|++++|.+....+..... .
T Consensus 318 n~~~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 318 NNFTGKIPVA--------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CccCCcCChh--------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 6665433322 2567778888888885432 335677788888888777665443321100 0
Q ss_pred --ccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 231 --ISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 231 --~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
+.+.....+..+++|+.|++.+|.-...++.....+++|+.|+++++.
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 000000134456677777777764333444444457777777777754
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.5e-19 Score=164.04 Aligned_cols=248 Identities=17% Similarity=0.211 Sum_probs=151.3
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.++++|. +|..-.++++|+|++|.|+.+.. .|..+.+|..|.++.|++ ..+|...|.++++|+.|++..|.+.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~ir--- 234 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIR--- 234 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhcccccee---
Confidence 45667775 47666788888888888875533 566777888888888866 5666665777888888888887761
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCC--------------------
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGT-------------------- 138 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------- 138 (330)
..-.-.++.+++|+.|.+..|.+..+++ +++..+.+++.|++..+.
T Consensus 235 ------------ive~ltFqgL~Sl~nlklqrN~I~kL~D--G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 235 ------------IVEGLTFQGLPSLQNLKLQRNDISKLDD--GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred ------------eehhhhhcCchhhhhhhhhhcCcccccC--cceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence 1112234455555555555555444332 112223334444442222
Q ss_pred --CCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEE
Q 037371 139 --YTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNM 214 (330)
Q Consensus 139 --~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L 214 (330)
+.+.......+...++|+.|+++.|.++.+..+.+ ..++.|++|.|+.|++.++. .+..+.+|+.|+|
T Consensus 301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf--------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF--------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhheeecchhhhcccceeEeccccccccCChhHH--------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 11333344445555566666666666555544333 34566666666666555543 4566777777777
Q ss_pred ecccccccccccccccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCC
Q 037371 215 QGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPL 285 (330)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~ 285 (330)
++|.+...+.+.. ..+..+++|++|++.++ +++.++-..+. ++.|++|++.+ +-+.++-.
T Consensus 373 r~N~ls~~IEDaa---------~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~ 433 (873)
T KOG4194|consen 373 RSNELSWCIEDAA---------VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASIQP 433 (873)
T ss_pred cCCeEEEEEecch---------hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceeecc
Confidence 7777665543211 25666889999999987 78887766544 88999999888 45555433
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=7.4e-18 Score=173.80 Aligned_cols=238 Identities=23% Similarity=0.294 Sum_probs=145.2
Q ss_pred CCccCChhhhccccccEeecCCCC-CcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTN-ITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
.+..+|.++..+++|++|+++++. +..+|. ++.+++|+.|++.+|.....+|.. ++++++|+.|++++|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~------ 693 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCEN------ 693 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCC------
Confidence 456677777778888888887764 456663 667777777777777666777765 77777777777777654
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEE---------------------echhhHHHhhcc-----------------
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSF---------------------RSSLAVQKFLKY----------------- 122 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~---------------------~~~~~~~~~~~~----------------- 122 (330)
...++..+ ++++|+.|++++ +.+..++.....
T Consensus 694 ---------L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 694 ---------LEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred ---------cCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence 11222222 344444444443 322211110000
Q ss_pred ----------ccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEE
Q 037371 123 ----------PKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTV 190 (330)
Q Consensus 123 ----------~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 190 (330)
.....+|+.|++ ++.. ....+..+.++++|+.|++. |+.++.++.. ..+++|++|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~---l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~----------~~L~sL~~L 830 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPS---LVELPSSIQNLHKLEHLEIENCINLETLPTG----------INLESLESL 830 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCC---ccccChhhhCCCCCCEEECCCCCCcCeeCCC----------CCccccCEE
Confidence 001123344444 2222 11223345566666666666 5555543211 135667777
Q ss_pred EEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCc
Q 037371 191 VLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKL 269 (330)
Q Consensus 191 ~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L 269 (330)
++++| .+..++.. .++|+.|+|+++.+++++. .+..+++|++|++.+|..+..++.....+++|
T Consensus 831 ~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~-------------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 831 DLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPW-------------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred ECCCCCcccccccc--ccccCEeECCCCCCccChH-------------HHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 77776 44433322 3567777777777766643 67789999999999999999988888889999
Q ss_pred cEEEEccCCCCCCCCC
Q 037371 270 KKIQVFHCRQLKKLPL 285 (330)
Q Consensus 270 ~~L~i~~c~~L~~lp~ 285 (330)
+.+.+.+|.+|+.++.
T Consensus 896 ~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 896 ETVDFSDCGALTEASW 911 (1153)
T ss_pred CeeecCCCcccccccC
Confidence 9999999999987654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=3e-19 Score=162.11 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=159.8
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+.++-+ +++-++.|++|||+.|.|+++|. ++..=.++++|++++|++ +.+..+.|..+.+|-.|.+++|.+
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLsrNri---- 209 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLSRNRI---- 209 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccccccccchheeeecccCcc----
Confidence 34555554 58999999999999999998887 566678899999999988 556655599999999999999999
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
...-+..+.++++|+.|++..|.+...+.+. +...++|+.|.+.-++ +.......|..+.++++|
T Consensus 210 -----------ttLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~--I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 210 -----------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRND--ISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred -----------cccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcC--cccccCcceeeeccccee
Confidence 4456788889999999999998765432211 1223445555552222 233333456666666777
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccc-------
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLS------- 229 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~------- 229 (330)
++..|+++.+...|. -++.+|+.|+++.|.+.. +......++|+.|+|++|.+..+.++.+..
T Consensus 275 ~L~~N~l~~vn~g~l--------fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWL--------FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred ecccchhhhhhcccc--------cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 776666665544332 334455555555552222 223334445555555554444443321110
Q ss_pred ccccccc-----CccccCcccceeeccccccccc----ccCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371 230 DISEIIG-----SEHNIFARLEYLTMWRGTNVKS----VYPNPLPFPKLKKIQVFHCRQLKKLPLNS 287 (330)
Q Consensus 230 ~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~i~~c~~L~~lp~~~ 287 (330)
.+..++. -.+..+.+|++|+++.+ .+.. -......+++|+.|.+.+ ++++.+|...
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA 411 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA 411 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhh
Confidence 0000000 15566788888888876 2222 111233489999999998 6888777543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=3.7e-20 Score=169.35 Aligned_cols=188 Identities=20% Similarity=0.207 Sum_probs=121.2
Q ss_pred cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371 5 KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGS 84 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (330)
-+|..+.++..|.+|||+.|++.+.|..+..-+++-+|++++|.+ ..+|..++-+++.|-.||+++|++
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrL---------- 162 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRL---------- 162 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchh----------
Confidence 488888888899999999998888888888888888888888866 677877788888888888888776
Q ss_pred cccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEcc
Q 037371 85 VLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSS 163 (330)
Q Consensus 85 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 163 (330)
. .+|+.++++.+|++|.+++|....++ +... ..+.+|+.|.+ +... .....+.++..+.+|..+++++|
T Consensus 163 -----e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-LrQL-PsmtsL~vLhms~TqR--Tl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 163 -----E-MLPPQIRRLSMLQTLKLSNNPLNHFQ-LRQL-PSMTSLSVLHMSNTQR--TLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred -----h-hcCHHHHHHhhhhhhhcCCChhhHHH-HhcC-ccchhhhhhhcccccc--hhhcCCCchhhhhhhhhcccccc
Confidence 2 57788888888888888888754322 1111 11233444444 2222 22223344556666666666666
Q ss_pred CcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccc
Q 037371 164 KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~ 222 (330)
.+..++... -.+++|.+|+|++|.++.+. ..+...+|++|+++.|++..+
T Consensus 233 ~Lp~vPecl---------y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 233 NLPIVPECL---------YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred CCCcchHHH---------hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc
Confidence 655432111 24455666666666555544 234455555555555555444
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=2.6e-17 Score=169.75 Aligned_cols=261 Identities=20% Similarity=0.218 Sum_probs=173.7
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
.+..+|..| ...+|++|+++++.+..+|.++..+++|+.|+++++...+.+|. ++.+++|+.|++++|..
T Consensus 600 ~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~------- 669 (1153)
T PLN03210 600 PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS------- 669 (1153)
T ss_pred CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-------
Confidence 456777766 35789999999998888988888999999999998877788886 88899999999999876
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
...++..+.++++|+.|+++++.. +..+.... ...+|+.|.+ +|.. ..... ...++|+.|++
T Consensus 670 --------L~~lp~si~~L~~L~~L~L~~c~~--L~~Lp~~i-~l~sL~~L~Lsgc~~--L~~~p----~~~~nL~~L~L 732 (1153)
T PLN03210 670 --------LVELPSSIQYLNKLEDLDMSRCEN--LEILPTGI-NLKSLYRLNLSGCSR--LKSFP----DISTNISWLDL 732 (1153)
T ss_pred --------ccccchhhhccCCCCEEeCCCCCC--cCccCCcC-CCCCCCEEeCCCCCC--ccccc----cccCCcCeeec
Confidence 446788899999999999987542 11222111 2456777777 6644 11110 11345666666
Q ss_pred EccCcceeeeCcccc---------------------cCccCCCCCCCccEEEEecc-cccccC-cccccCCccEEEEec-
Q 037371 161 GSSKLEEMKIDSTEE---------------------VKKLFRNGFRSLNTVVLRSC-RGKDLT-WLVFVQNLKQLNMQG- 216 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~L~~L~L~~~-~~~~l~-~l~~l~~L~~L~L~~- 216 (330)
+++.++.++...... -.......+++|+.|++++| .+..+| .++++++|+.|+|++
T Consensus 733 ~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC 812 (1153)
T ss_pred CCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence 655544332110000 00001123467888888888 555544 578888888888888
Q ss_pred ccccccccccccccccccccCccccCcccceeecccccccc--------------------cccCCCCCCCCccEEEEcc
Q 037371 217 FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVK--------------------SVYPNPLPFPKLKKIQVFH 276 (330)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--------------------~l~~~~~~~~~L~~L~i~~ 276 (330)
+.++.++. . ..+++|+.|++++|..+. .++.....+++|+.|.+.+
T Consensus 813 ~~L~~LP~-------------~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 813 INLETLPT-------------G-INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCcCeeCC-------------C-CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 55666533 1 145666666666665544 3333344588999999999
Q ss_pred CCCCCCCCCCCcCCC-CCceEEeccHHH
Q 037371 277 CRQLKKLPLNSSSAK-GRRVVIEGTKKW 303 (330)
Q Consensus 277 c~~L~~lp~~~~~~~-~~~~~i~~~~~~ 303 (330)
|++|+.+|.....+. .+...+.+|...
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCccc
Confidence 999999998776655 445566666544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=3.4e-19 Score=163.11 Aligned_cols=254 Identities=21% Similarity=0.257 Sum_probs=201.0
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhh-hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+.+.|..+...+++-+|+|++|+|..||..+ .++..|-+||+++|++ ..+|+. +.++..||+|++++|.+
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ-~RRL~~LqtL~Ls~NPL----- 185 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQ-IRRLSMLQTLKLSNNPL----- 185 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHH-HHHHhhhhhhhcCCChh-----
Confidence 578899999999999999999999999999865 7899999999999977 788887 99999999999999888
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
...-...+..++.|++|++++...+ ...+......+.+|..+++++++ -...+..+..+++|+.|+
T Consensus 186 ----------~hfQLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 186 ----------NHFQLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred ----------hHHHHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccC---CCcchHHHhhhhhhheec
Confidence 4456677888888999999876533 23344444455667788886655 344556788999999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccc--cccccccccccccccc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTME--EIISVDKLSDISEIIG 236 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~--~~~~~~~~~~~~~~~~ 236 (330)
+++|+++.+.... +...+|+.|+++.|.++.+| ++..++.|+.|-+.+|++. +|+
T Consensus 252 LS~N~iteL~~~~---------~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP------------- 309 (1255)
T KOG0444|consen 252 LSGNKITELNMTE---------GEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP------------- 309 (1255)
T ss_pred cCcCceeeeeccH---------HHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc-------------
Confidence 9999998775432 45678999999999888876 6889999999999886654 442
Q ss_pred CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC-CCceEEec
Q 037371 237 SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-GRRVVIEG 299 (330)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~~~~~i~~ 299 (330)
+.++.+..|+.+...++ .++-.+.....|+.|+.|.+.+ +.|-.+|...--+. .....+..
T Consensus 310 SGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred cchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccC
Confidence 37888999998888876 7777777777799999999876 78989998765544 44444443
No 9
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.67 E-value=4.8e-17 Score=160.90 Aligned_cols=290 Identities=35% Similarity=0.471 Sum_probs=169.3
Q ss_pred ccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371 4 SKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG 83 (330)
Q Consensus 4 ~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (330)
.++|++++++.+||+|+++++.+..+|.+++++..|.+|++..+.....+|. .+..|.+||+|.+..... +.
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~-~~------ 656 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSAL-SN------ 656 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccc-cc------
Confidence 4455555555555555555555555555555555555555544433222222 133355555555544321 11
Q ss_pred ccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE-
Q 037371 84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG- 161 (330)
Q Consensus 84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~- 161 (330)
.......+.++.+|+.+.+.......+..+.....+....+.+.+ .+ ........+..+.+|+.|.|.
T Consensus 657 ------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~----~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 657 ------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC----SKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred ------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc----ccceeecccccccCcceEEEEc
Confidence 334455555555555555543332112222222222222222222 11 123334567788899999998
Q ss_pred ccCcceeeeCcccccCccCCC-CCCCccEEEEecc-cccccCcccccCCccEEEEec-ccccccccccccccccccccCc
Q 037371 162 SSKLEEMKIDSTEEVKKLFRN-GFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSE 238 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~ 238 (330)
|...+ ....+. ...... .|+++..+.+.+| ...++.|....|+|+.|.+.. ..++++.+.+....... ..
T Consensus 727 ~~~~e-~~~~~~---~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~---~~ 799 (889)
T KOG4658|consen 727 CGISE-IVIEWE---ESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELK---EL 799 (889)
T ss_pred CCCch-hhcccc---cccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcc---cE
Confidence 44432 212221 011112 2667888888888 888888888899999999998 77777766433322111 12
Q ss_pred cccCccccee-ecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC-C--CceEEeccHHHHhhccccchhh
Q 037371 239 HNIFARLEYL-TMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK-G--RRVVIEGTKKWWEELQWEDQAT 314 (330)
Q Consensus 239 ~~~~~~L~~L-~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~-~--~~~~i~~~~~~~~~l~~~~~~~ 314 (330)
.-.|.+++.+ .+.+...+..+......++.|+.+.+..||+++.+|....... . .......+.+|.+.+.|.+..+
T Consensus 800 i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~ 879 (889)
T KOG4658|consen 800 ILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELT 879 (889)
T ss_pred EecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhh
Confidence 4567778888 5888888888888888888999999999999999998876533 1 2334445567889999999999
Q ss_pred Hhhh
Q 037371 315 QNAF 318 (330)
Q Consensus 315 ~~~~ 318 (330)
+.++
T Consensus 880 ~~~~ 883 (889)
T KOG4658|consen 880 KLRF 883 (889)
T ss_pred hhhc
Confidence 8887
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=7.2e-18 Score=147.07 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=154.0
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+-+.+.++..|.+|++..|++..+|+.++.+..++.++++.|++ ..+|++ +..+.+|++|+.++|..
T Consensus 55 N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l-s~lp~~-i~s~~~l~~l~~s~n~~------ 126 (565)
T KOG0472|consen 55 NDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL-SELPEQ-IGSLISLVKLDCSSNEL------ 126 (565)
T ss_pred CchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH-hhccHH-Hhhhhhhhhhhccccce------
Confidence 3444555566677777777777777777777777777777777777755 556665 66777777777776555
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
..++.+++++-.|..++..+|.+...++-+ ..+..+..+.+.-+. .....+....|+.|++|+.
T Consensus 127 ----------~el~~~i~~~~~l~dl~~~~N~i~slp~~~---~~~~~l~~l~~~~n~---l~~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 127 ----------KELPDSIGRLLDLEDLDATNNQISSLPEDM---VNLSKLSKLDLEGNK---LKALPENHIAMKRLKHLDC 190 (565)
T ss_pred ----------eecCchHHHHhhhhhhhccccccccCchHH---HHHHHHHHhhccccc---hhhCCHHHHHHHHHHhccc
Confidence 144556666666666666666554433211 112223333331111 1122222333777777777
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (330)
..|.++.++++. +.+.+|+.|+++.|.+..+|.++++..|++|+++.|.++-++.+ ...
T Consensus 191 ~~N~L~tlP~~l---------g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae------------~~~ 249 (565)
T KOG0472|consen 191 NSNLLETLPPEL---------GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAE------------HLK 249 (565)
T ss_pred chhhhhcCChhh---------cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHH------------Hhc
Confidence 666666554332 46677777777777777777777777777777777776666541 445
Q ss_pred cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCCCCceEEec
Q 037371 241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEG 299 (330)
Q Consensus 241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~i~~ 299 (330)
.++++..|++.+. ++++.+.+..-+.+|+.|++++ +.+..+|.....++.......|
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leG 306 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEG 306 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcC
Confidence 6777777777776 6777666666667777777777 5677777766666544444443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-15 Score=132.36 Aligned_cols=216 Identities=21% Similarity=0.243 Sum_probs=153.9
Q ss_pred CCCccCChh-hhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPSG-ISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+++||+. |+.+++||.|||+.|.|+.| |..|..+++|..|.+.++..++++|..+|.++..|+-|.+.-|.+
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i---- 152 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI---- 152 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh----
Confidence 788999975 99999999999999999965 668999999999888774445899998899999999999888887
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHH-----hhc--------cc----------------------
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK-----FLK--------YP---------------------- 123 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~--------~~---------------------- 123 (330)
.......++.+++|+.|.+..|.+..+.. +.. ..
T Consensus 153 -----------~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 153 -----------NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred -----------cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 33556667777777766666554322111 000 00
Q ss_pred ---------------------cccCceEEEE--E--EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCc
Q 037371 124 ---------------------KLVSITQSVW--V--ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKK 178 (330)
Q Consensus 124 ---------------------~~~~~L~~L~--l--~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 178 (330)
....+++.+- + +|.. ...-....|..+++|+.|++++|+++.+...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~--d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF----- 294 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP--DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF----- 294 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc--CCcChHHHHhhcccceEeccCCCccchhhhhhh-----
Confidence 0000000000 0 0000 011112237789999999999999999887776
Q ss_pred cCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371 179 LFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 179 ~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (330)
.....+++|.|..|.+..+. .+.++..|+.|+|.+|+++.+.+. .+....+|.+|.+..+
T Consensus 295 ---e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------------aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 295 ---EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------------AFQTLFSLSTLNLLSN 356 (498)
T ss_pred ---cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc------------cccccceeeeeehccC
Confidence 77889999999999777765 578899999999999999988663 6666777777777643
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.1e-13 Score=134.61 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=47.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
|+++++|..+. .+|+.|++.+|+++.+|. .+++|++|++++|.+ ..+|.. .++|+.|++++|.+
T Consensus 211 ~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~L-tsLP~l----p~sL~~L~Ls~N~L 274 (788)
T PRK15387 211 SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPVL----PPGLLELSIFSNPL 274 (788)
T ss_pred CCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCcc-CcccCc----ccccceeeccCCch
Confidence 46778888776 478899999998888875 357889999988866 456641 35677777777665
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.44 E-value=1.7e-15 Score=132.37 Aligned_cols=228 Identities=19% Similarity=0.194 Sum_probs=173.2
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+.++|..++++..++.++.+.+++.++|..++.+.+|++++.+.|++ .++|++ ++++-.|..|+..+|.+.
T Consensus 78 n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~el~~~-i~~~~~l~dl~~~~N~i~----- 150 (565)
T KOG0472|consen 78 NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KELPDS-IGRLLDLEDLDATNNQIS----- 150 (565)
T ss_pred chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-eecCch-HHHHhhhhhhhccccccc-----
Confidence 5678999999999999999999999999999999999999999999988 667776 999999999999998882
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
..++++..+.+|..+.+.+|......+-. .. +..|+.|+.. ++ .-...+..++.+.+|..|++
T Consensus 151 -----------slp~~~~~~~~l~~l~~~~n~l~~l~~~~--i~-m~~L~~ld~~-~N--~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 151 -----------SLPEDMVNLSKLSKLDLEGNKLKALPENH--IA-MKRLKHLDCN-SN--LLETLPPELGGLESLELLYL 213 (565)
T ss_pred -----------cCchHHHHHHHHHHhhccccchhhCCHHH--HH-HHHHHhcccc-hh--hhhcCChhhcchhhhHHHHh
Confidence 56778888888888888887765432211 01 3335555541 11 24455667888888888888
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCc--ccccCCccEEEEecccccccccccccccccccccCc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW--LVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSE 238 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~ 238 (330)
..|++..++ .++++..|++++++.|.+..+++ +.+++++..|++.+|++++.++ .
T Consensus 214 ~~Nki~~lP----------ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-------------e 270 (565)
T KOG0472|consen 214 RRNKIRFLP----------EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-------------E 270 (565)
T ss_pred hhcccccCC----------CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-------------H
Confidence 877776442 34677788888888887766653 5578888888888888888865 4
Q ss_pred cccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371 239 HNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 239 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 277 (330)
.-.+.+|++|++++. .+..++...+.+ .|+.|.+.+.
T Consensus 271 ~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 556777888888877 677777777766 6777766664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=3.1e-15 Score=142.69 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc---------------------
Q 037371 141 RPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--------------------- 199 (330)
Q Consensus 141 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--------------------- 199 (330)
.+...+..+.++++|+.|++++|++..++.... .++..|++|+++||.++.
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred ccccchhhhccccceeeeeecccccccCCHHHH--------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce
Confidence 344455556666666666666666655433322 444555555555554433
Q ss_pred --cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371 200 --LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 200 --l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 277 (330)
+|.+.+++.|+.+|++.|++..+... ....-|+|++|+++++.. .......|+.++.+....
T Consensus 443 ~~fPe~~~l~qL~~lDlS~N~L~~~~l~------------~~~p~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~~~- 506 (1081)
T KOG0618|consen 443 LSFPELAQLPQLKVLDLSCNNLSEVTLP------------EALPSPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQMD- 506 (1081)
T ss_pred eechhhhhcCcceEEecccchhhhhhhh------------hhCCCcccceeeccCCcc---cccchhhhHHhhhhhhee-
Confidence 34444566666666666666655331 111115667777766643 122233355555554444
Q ss_pred CCCCCCCCCCcC
Q 037371 278 RQLKKLPLNSSS 289 (330)
Q Consensus 278 ~~L~~lp~~~~~ 289 (330)
..++..|.+...
T Consensus 507 i~~~~~~d~~~n 518 (1081)
T KOG0618|consen 507 ITLNNTPDGNVN 518 (1081)
T ss_pred cccCCCCccccc
Confidence 233344444433
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=3.2e-15 Score=142.61 Aligned_cols=211 Identities=19% Similarity=0.188 Sum_probs=129.5
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.++.+|+-++.|.+|+.++...|.+..+|..+..+.+|++|.+..|++ ..+|+. ...+..|++|++..|.+..-
T Consensus 251 n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~-le~~~sL~tLdL~~N~L~~l--- 325 (1081)
T KOG0618|consen 251 NNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPF-LEGLKSLRTLDLQSNNLPSL--- 325 (1081)
T ss_pred hhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCc-ccccceeeeeeehhcccccc---
Confidence 4567788778889999999999988888888888888888888888866 666764 67788888888888876211
Q ss_pred ccCccccCCchhhHHH---------------hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcc
Q 037371 81 EEGSVLCDDAEPLMKE---------------LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN 145 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~---------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 145 (330)
+...... ....... -..++.|+.|.+.+|.... ...-.+....+|+.|.+..+. ...+.
T Consensus 326 -p~~~l~v-~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd--~c~p~l~~~~hLKVLhLsyNr--L~~fp 399 (1081)
T KOG0618|consen 326 -PDNFLAV-LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD--SCFPVLVNFKHLKVLHLSYNR--LNSFP 399 (1081)
T ss_pred -chHHHhh-hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc--cchhhhccccceeeeeecccc--cccCC
Confidence 1000000 0000000 0012234444454444321 111122334557777763333 34455
Q ss_pred ccccccccCccEEEEEccCcceeeeCcccc-------------cCccCCCCCCCccEEEEecccccccC--cccccCCcc
Q 037371 146 VLHLAYMENLQELELGSSKLEEMKIDSTEE-------------VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLK 210 (330)
Q Consensus 146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~ 210 (330)
...+.+++.|++|++++|+++.+....... ...+....+++|+.++++.|.+.... ....-|+|+
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 556778888888888888877664222111 01234567789999999988665532 222238999
Q ss_pred EEEEeccccccc
Q 037371 211 QLNMQGFTMEEI 222 (330)
Q Consensus 211 ~L~L~~~~l~~~ 222 (330)
+|++++|.....
T Consensus 480 yLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 480 YLDLSGNTRLVF 491 (1081)
T ss_pred eeeccCCccccc
Confidence 999999775333
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=6.6e-13 Score=129.84 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=128.8
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
+++++|..+. ++|+.|++++|+++.+|..+. .+|+.|++++|.+ ..+|.. + ..+|+.|++++|.+
T Consensus 189 ~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~-l--~~~L~~L~Ls~N~L------- 253 (754)
T PRK15370 189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPAT-L--PDTIQEMELSINRI------- 253 (754)
T ss_pred CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChh-h--hccccEEECcCCcc-------
Confidence 5667787664 478888888888888887654 5788888888866 566764 3 24688888888777
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
. .++..+. .+|+.|++++|.+..++. ....+|+.|++ ++.. ... ...+ .+.|+.|++
T Consensus 254 --------~-~LP~~l~--s~L~~L~Ls~N~L~~LP~-----~l~~sL~~L~Ls~N~L---t~L-P~~l--p~sL~~L~L 311 (754)
T PRK15370 254 --------T-ELPERLP--SALQSLDLFHNKISCLPE-----NLPEELRYLSVYDNSI---RTL-PAHL--PSGITHLNV 311 (754)
T ss_pred --------C-cCChhHh--CCCCEEECcCCccCcccc-----ccCCCCcEEECCCCcc---ccC-cccc--hhhHHHHHh
Confidence 1 2233332 467888888776654332 12345777777 3322 211 1111 135677777
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (330)
++|.++.+.. .-+++|+.|++++|.++.++.- -.++|+.|++++|.+..++. .+
T Consensus 312 s~N~Lt~LP~-----------~l~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~-------------~l- 365 (754)
T PRK15370 312 QSNSLTALPE-----------TLPPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPE-------------TL- 365 (754)
T ss_pred cCCccccCCc-----------cccccceeccccCCccccCChh-hcCcccEEECCCCCCCcCCh-------------hh-
Confidence 7666654321 1235677777777765554421 13577777777776665532 11
Q ss_pred cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
.++|+.|++++| .+..++... ..+|+.|++++ +++..+|..
T Consensus 366 -p~~L~~LdLs~N-~Lt~LP~~l--~~sL~~LdLs~-N~L~~LP~s 406 (754)
T PRK15370 366 -PPTITTLDVSRN-ALTNLPENL--PAALQIMQASR-NNLVRLPES 406 (754)
T ss_pred -cCCcCEEECCCC-cCCCCCHhH--HHHHHHHhhcc-CCcccCchh
Confidence 256777777766 454444322 23566666666 355566543
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.1e-14 Score=113.56 Aligned_cols=161 Identities=23% Similarity=0.323 Sum_probs=107.4
Q ss_pred hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
+-.+.++..|-++.|+++.+|..+..+.+|+.|++.+|++ +++|.. ++++++|++|++.-|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~-issl~klr~lnvgmnrl--------------- 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTS-ISSLPKLRILNVGMNRL--------------- 91 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChh-hhhchhhhheecchhhh---------------
Confidence 4445666666777777777777777777777777776655 666665 77777777777766554
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK 169 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 169 (330)
..++.+++.++.|+.|+++.|... +......|..+..|+.|.++.|.++.+.
T Consensus 92 -~~lprgfgs~p~levldltynnl~---------------------------e~~lpgnff~m~tlralyl~dndfe~lp 143 (264)
T KOG0617|consen 92 -NILPRGFGSFPALEVLDLTYNNLN---------------------------ENSLPGNFFYMTTLRALYLGDNDFEILP 143 (264)
T ss_pred -hcCccccCCCchhhhhhccccccc---------------------------cccCCcchhHHHHHHHHHhcCCCcccCC
Confidence 145666777777777766655421 2223345666777777777777776553
Q ss_pred eCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccccc
Q 037371 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIIS 224 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~ 224 (330)
++ .+.+.+|+.|.+++|.+..++ .++.+..|++|++.+|.+..+++
T Consensus 144 ~d---------vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 144 PD---------VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hh---------hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 32 367788888888888555544 57778888888888888877766
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=2.7e-14 Score=111.43 Aligned_cols=99 Identities=29% Similarity=0.420 Sum_probs=88.4
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.++.+|..+..+++|++|++++|.+.++|.+++.+++|+.|++..|++ ..+|.+ |+.++-|++||+.+|.. +
T Consensus 43 NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~~lprg-fgs~p~levldltynnl-~---- 115 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-NILPRG-FGSFPALEVLDLTYNNL-N---- 115 (264)
T ss_pred CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-hcCccc-cCCCchhhhhhcccccc-c----
Confidence 5788899999999999999999999999999999999999999999977 778998 99999999999999887 2
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 115 (330)
...++..+-.+..|+.|+++.|.+.-
T Consensus 116 ---------e~~lpgnff~m~tlralyl~dndfe~ 141 (264)
T KOG0617|consen 116 ---------ENSLPGNFFYMTTLRALYLGDNDFEI 141 (264)
T ss_pred ---------cccCCcchhHHHHHHHHHhcCCCccc
Confidence 44677888888999999999887543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=2.3e-13 Score=121.88 Aligned_cols=241 Identities=15% Similarity=0.046 Sum_probs=149.3
Q ss_pred CChhhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCC------CCchhhhCCCCCCcEEEeccCCC
Q 037371 6 LPSGISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLS------IIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 6 lp~~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~------~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
.+.-+..+.+|++|+++++.+. .++..+...+.|++++++++.+.+ .++. ++..+++|+.|++++|.+
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQELDLSDNAL 93 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCceeEEEccCCCC
Confidence 3445677788999999999884 466677788889999998886641 1223 367788999999999887
Q ss_pred CCccccccCccccCCchhhHHHhccC---cCcceeeEEEechhh--HHHhhcccccc-CceEEEEE-EeCCCCCCCc---
Q 037371 75 WSVLEEEEGSVLCDDAEPLMKELLGL---KHLNVLSWSFRSSLA--VQKFLKYPKLV-SITQSVWV-ECGTYTRPPF--- 144 (330)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l-~~~~~~~~~~--- 144 (330)
.......+..+ ++|++|++++|.+.. ...+....... .+|++|++ ++.- ...
T Consensus 94 ---------------~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~~~~ 155 (319)
T cd00116 94 ---------------GPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL---EGASCE 155 (319)
T ss_pred ---------------ChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC---CchHHH
Confidence 22333344444 459999999887642 22222222233 67888888 5543 211
Q ss_pred -cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEEEEecc
Q 037371 145 -NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQLNMQGF 217 (330)
Q Consensus 145 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L~L~~~ 217 (330)
....+..+++|+.|+++.+.++....... ......+++|++|++++|.+.+. ..+..+++|++|+++++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRAL----AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHH----HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 12345667789999998666653111100 00113447899999998855432 23556888999999988
Q ss_pred cccccccccccccccccccCccccCcccceeeccccccccc-----ccCCCCCCCCccEEEEccC
Q 037371 218 TMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS-----VYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~~~~L~~L~i~~c 277 (330)
.+.+........ ......+.|+.|++.+| .+.+ +......+++|+.++++++
T Consensus 232 ~l~~~~~~~l~~-------~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 232 NLTDAGAAALAS-------ALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred cCchHHHHHHHH-------HHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 776542210000 01113478899999888 3331 1112233578888888874
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.32 E-value=1.3e-12 Score=127.79 Aligned_cols=214 Identities=18% Similarity=0.183 Sum_probs=139.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.++++|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.+ ..+|.. +. .+|+.|++++|.+
T Consensus 209 N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~-l~--s~L~~L~Ls~N~L------ 274 (754)
T PRK15370 209 NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPER-LP--SALQSLDLFHNKI------ 274 (754)
T ss_pred CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChh-Hh--CCCCEEECcCCcc------
Confidence 67888998765 589999999999999998664 4799999999977 578876 43 4799999999887
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
. .++..+. ++|+.|++++|.+..++. ....+|+.|++..+. .... .. .-.++|+.|++
T Consensus 275 ---------~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls~N~--Lt~L-P~--~l~~sL~~L~L 332 (754)
T PRK15370 275 ---------S-CLPENLP--EELRYLSVYDNSIRTLPA-----HLPSGITHLNVQSNS--LTAL-PE--TLPPGLKTLEA 332 (754)
T ss_pred ---------C-ccccccC--CCCcEEECCCCccccCcc-----cchhhHHHHHhcCCc--cccC-Cc--cccccceeccc
Confidence 2 2333332 479999999887654332 112346666662222 1211 11 12357888888
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN 240 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (330)
++|.++.+.. .-+++|+.|++++|.+..++. .-.++|+.|+|++|.+..+++ ..
T Consensus 333 s~N~Lt~LP~-----------~l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt~LP~-------------~l- 386 (754)
T PRK15370 333 GENALTSLPA-----------SLPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALTNLPE-------------NL- 386 (754)
T ss_pred cCCccccCCh-----------hhcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCCCCCH-------------hH-
Confidence 8777664421 113678888888886665542 113688888888888877744 11
Q ss_pred cCcccceeecccccccccccCCCC----CCCCccEEEEccCC
Q 037371 241 IFARLEYLTMWRGTNVKSVYPNPL----PFPKLKKIQVFHCR 278 (330)
Q Consensus 241 ~~~~L~~L~l~~~~~l~~l~~~~~----~~~~L~~L~i~~c~ 278 (330)
..+|+.|+++++ .+..++.... .++++..|.+.+.+
T Consensus 387 -~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 387 -PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 236777777776 5555443321 24667777777643
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=2.7e-13 Score=121.51 Aligned_cols=244 Identities=18% Similarity=0.083 Sum_probs=157.0
Q ss_pred cCChhhhccccccEeecCCCCCcc-------cChhhhcCcccceeccCCCCCCCCCchhhhCCCCC---CcEEEeccCCC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNITG-------LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSK---LEVLRLLSRGR 74 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~~-------lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~---L~~L~l~~~~~ 74 (330)
.+++.+...+.+++++++++.+.. ++..+..+++|+.|++++|.+....+.. +..+.+ |++|++++|.+
T Consensus 42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCcc
Confidence 456667778889999999986653 3346778899999999999886555543 555555 99999999887
Q ss_pred CCccccccCccccCCchhhHHHhccC-cCcceeeEEEechh--hHHHhhccccccCceEEEEE-EeCCCCCCCcc----c
Q 037371 75 WSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSL--AVQKFLKYPKLVSITQSVWV-ECGTYTRPPFN----V 146 (330)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~----~ 146 (330)
+. .+ .......+..+ ++|+.|++++|.+. ....+......+..|++|++ ++.- .... .
T Consensus 121 -~~----~~------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~l~ 186 (319)
T cd00116 121 -GD----RG------LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI---GDAGIRALA 186 (319)
T ss_pred -ch----HH------HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC---chHHHHHHH
Confidence 21 00 12344567777 99999999998765 23333333344567899998 5432 2211 1
Q ss_pred cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--Cccc-----ccCCccEEEEecccc
Q 037371 147 LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLV-----FVQNLKQLNMQGFTM 219 (330)
Q Consensus 147 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~-----~l~~L~~L~L~~~~l 219 (330)
..+..+++|++|+++++.+++...... ......+++|++|++++|.+.+. ..+. ..+.|++|+++++.+
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l----~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASAL----AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHH----HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 234566799999999777654322211 11134678999999999966642 2221 247999999999887
Q ss_pred cccccccccccccccccCccccCcccceeecccccccccc-----cCCCCCC-CCccEEEEcc
Q 037371 220 EEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV-----YPNPLPF-PKLKKIQVFH 276 (330)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~-~~L~~L~i~~ 276 (330)
++.... .+. .....+++|++++++++ .+.+. ......+ +.|+++.|.+
T Consensus 263 ~~~~~~----~l~----~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 263 TDDGAK----DLA----EVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CcHHHH----HHH----HHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 633211 000 14455689999999987 33332 1112234 5677777665
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=6.8e-12 Score=122.38 Aligned_cols=214 Identities=20% Similarity=0.188 Sum_probs=120.6
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|+++++|.. .++|++|++++|+++.+|.. .++|+.|++++|.+ ..+|.. .++|+.|++++|++ +.
T Consensus 232 N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l----p~~L~~L~Ls~N~L-t~--- 296 (788)
T PRK15387 232 NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL----PSGLCKLWIFGNQL-TS--- 296 (788)
T ss_pred CcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc----hhhcCEEECcCCcc-cc---
Confidence 577888853 57899999999999988853 46788888888865 455541 24577778877776 21
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccc-cCccEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYM-ENLQEL 158 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l-~~L~~L 158 (330)
++. ..++|+.|++++|.+..++. ....|+.|++ ++.. .. +..+ .+|+.|
T Consensus 297 ------------LP~---~p~~L~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L---~~-----LP~lp~~Lq~L 347 (788)
T PRK15387 297 ------------LPV---LPPGLQELSVSDNQLASLPA------LPSELCKLWAYNNQL---TS-----LPTLPSGLQEL 347 (788)
T ss_pred ------------ccc---cccccceeECCCCccccCCC------CcccccccccccCcc---cc-----ccccccccceE
Confidence 121 23567777777776554332 1223555555 2211 11 1111 356666
Q ss_pred EEEccCcceeeeCccccc---------CccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEV---------KKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS 229 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 229 (330)
++++|+++.++....... ...+ ....+|+.|++++|.+..++.. .++|+.|++++|.+..++.
T Consensus 348 dLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP-~l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~----- 419 (788)
T PRK15387 348 SVSDNQLASLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPM----- 419 (788)
T ss_pred ecCCCccCCCCCCCcccceehhhccccccCc-ccccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCc-----
Confidence 666666554321000000 0000 1123466666666655444432 2456666666666555422
Q ss_pred cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
.+.+|+.|+++++ .++.++.....+++|+.|++.+++
T Consensus 420 -----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 -----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -----------chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 1245677777765 566666665667788888887753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-13 Score=119.90 Aligned_cols=246 Identities=16% Similarity=0.211 Sum_probs=144.4
Q ss_pred CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc-CCCCCccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS-RGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~-~~~~~~~~ 79 (330)
+|.++|..+- ..-..++|..|+|+.||. .|+.+++||.||++.|.+...-|. +|.++.+|-.|-+.+ |+|
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI----- 128 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKI----- 128 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCch-----
Confidence 4677886665 356778999999999887 678899999999999988655566 499999987777666 777
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
...--..+..+..|+.|.+.=|....+.. ..+.-+.++..|.+ ..+......-..+..+..++.++
T Consensus 129 ----------~~l~k~~F~gL~slqrLllNan~i~Cir~--~al~dL~~l~lLsl--yDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 129 ----------TDLPKGAFGGLSSLQRLLLNANHINCIRQ--DALRDLPSLSLLSL--YDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred ----------hhhhhhHhhhHHHHHHHhcChhhhcchhH--HHHHHhhhcchhcc--cchhhhhhccccccchhccchHh
Confidence 22334567777777777665444322111 01111222333333 11111223333577777888888
Q ss_pred EEccC-cceeee--------------CcccccC----------ccCCCCC-CCccEE---EEecccccc---cCcccccC
Q 037371 160 LGSSK-LEEMKI--------------DSTEEVK----------KLFRNGF-RSLNTV---VLRSCRGKD---LTWLVFVQ 207 (330)
Q Consensus 160 l~~~~-~~~~~~--------------~~~~~~~----------~~~~~~~-~~L~~L---~L~~~~~~~---l~~l~~l~ 207 (330)
+.-|. +.+-.. +++.... ......+ ..++.+ -.+.|.... ..++..++
T Consensus 195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence 77333 111111 1111000 0000000 112222 112221211 22577899
Q ss_pred CccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEccCCCCCCC
Q 037371 208 NLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCRQLKKL 283 (330)
Q Consensus 208 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~~L~~l 283 (330)
+|+.|+|++|.++++.+. .+....+++.|.+.++ +++.+....+ .+..|+.|++.+ ++++.+
T Consensus 275 ~L~~lnlsnN~i~~i~~~------------aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~ 337 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDG------------AFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTV 337 (498)
T ss_pred cceEeccCCCccchhhhh------------hhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEE
Confidence 999999999999888552 5666778888888776 5666554433 378888888888 466554
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=2.6e-11 Score=120.58 Aligned_cols=62 Identities=35% Similarity=0.534 Sum_probs=28.9
Q ss_pred hhccccccEeecCCC-CCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC
Q 037371 10 ISNLVSLHHLDLSRT-NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG 73 (330)
Q Consensus 10 l~~l~~L~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 73 (330)
|..++.|++|||++| .+.++|..+++|.+||+|+++++.+ ..+|.. +.++.+|.+|++..+.
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~-l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSG-LGNLKKLIYLNLEVTG 629 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchH-HHHHHhhheecccccc
Confidence 444445555555544 2334444444555555555544433 344444 4444455555444433
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.9e-11 Score=106.45 Aligned_cols=209 Identities=19% Similarity=0.163 Sum_probs=99.8
Q ss_pred hhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEe
Q 037371 33 LKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFR 111 (330)
Q Consensus 33 l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 111 (330)
=+++.+|+...++++.. ...+. .....+++++.||+++|-+++ .....+....+++|+.|+++.|
T Consensus 117 Qsn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~n-------------w~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHN-------------WFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHh-------------HHHHHHHHHhcccchhcccccc
Confidence 34566666666665533 22221 234456666666666665522 2234455556666666666665
Q ss_pred chhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccE
Q 037371 112 SSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNT 189 (330)
Q Consensus 112 ~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 189 (330)
.+...-+-... ...+.|+.|.+ +|+. +...+ ..+..+|.|..|.+..|..... .. .+..-+..|+.
T Consensus 183 rl~~~~~s~~~-~~l~~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~------~~~~i~~~L~~ 250 (505)
T KOG3207|consen 183 RLSNFISSNTT-LLLSHLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILI--KA------TSTKILQTLQE 250 (505)
T ss_pred cccCCccccch-hhhhhhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccce--ec------chhhhhhHHhh
Confidence 54321110000 12344566666 5544 22222 2244566666666664421101 00 01123455677
Q ss_pred EEEeccccccc---CcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCC--C
Q 037371 190 VVLRSCRGKDL---TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP--L 264 (330)
Q Consensus 190 L~L~~~~~~~l---~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~--~ 264 (330)
|+|++|.+.+. +..+.+|.|+.|.++.+.+.++..- ...+.-....|++|++|.+..+ .+++|.... .
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~------d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~ 323 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP------DVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR 323 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcchhcCC------CccchhhhcccccceeeecccC-ccccccccchhh
Confidence 77776644333 3456677777777766666555210 0000012355677777766665 344433321 1
Q ss_pred CCCCccEEEE
Q 037371 265 PFPKLKKIQV 274 (330)
Q Consensus 265 ~~~~L~~L~i 274 (330)
..++|+.|.+
T Consensus 324 ~l~nlk~l~~ 333 (505)
T KOG3207|consen 324 TLENLKHLRI 333 (505)
T ss_pred ccchhhhhhc
Confidence 2445555443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.1e-11 Score=104.13 Aligned_cols=188 Identities=19% Similarity=0.172 Sum_probs=130.6
Q ss_pred hccccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCc-hhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 11 SNLVSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIP-PQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
+++++|+.+.|.++.+...+. ....|++++.||++.|-+..-.| ..++..+++|+.|+++.|+....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~---------- 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF---------- 187 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC----------
Confidence 567889999999998775553 56789999999999985532222 23467899999999999987322
Q ss_pred CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
..... -..+.+|+.|.++.|..+ ..++......+++++.|++.-+. ..........-+..|+.|++++|.+.+
T Consensus 188 --~~s~~--~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 188 --ISSNT--TLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANE--IILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred --ccccc--hhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhccc--ccceecchhhhhhHHhhccccCCcccc
Confidence 11111 116778888889988776 56666666778888888882221 012222334567789999999776654
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecccccccC---c-----ccccCCccEEEEeccccccc
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT---W-----LVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~---~-----l~~l~~L~~L~L~~~~l~~~ 222 (330)
.... ...+.++.|..|.++.|++..+. . ...+++|++|++..|++.++
T Consensus 261 ~~~~-------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 261 FDQG-------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred cccc-------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 4321 22478899999999998665532 2 35689999999999888777
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2e-11 Score=103.42 Aligned_cols=223 Identities=21% Similarity=0.161 Sum_probs=146.8
Q ss_pred ccEeecCCCCCcccChhhhcCcc--cceeccCCCCCCCCCch--hhhCCC-CCCcEEEeccCCCCCccccccCccccCCc
Q 037371 16 LHHLDLSRTNITGLPQELKALEK--LRYLNLDHTRFLSIIPP--QLISGF-SKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~--L~~L~l~~~~~~~~~p~--~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
-+.+|+.+-.+. |..++.+.. ..++.+.... ..-|. ..+.-. ..||+||+++..+ + .
T Consensus 138 W~~lDl~~r~i~--p~~l~~l~~rgV~v~Rlar~~--~~~prlae~~~~frsRlq~lDLS~s~i-t-------------~ 199 (419)
T KOG2120|consen 138 WQTLDLTGRNIH--PDVLGRLLSRGVIVFRLARSF--MDQPRLAEHFSPFRSRLQHLDLSNSVI-T-------------V 199 (419)
T ss_pred eeeeccCCCccC--hhHHHHHHhCCeEEEEcchhh--hcCchhhhhhhhhhhhhHHhhcchhhe-e-------------H
Confidence 356666665554 444555444 3344443321 22221 112222 2499999999777 2 3
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEE-ccCcce
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELG-SSKLEE 167 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~-~~~~~~ 167 (330)
..+...+..+.+|+.|.+.++.... ++........+|+.|++ .|++ .+.... ..+..+..|.+|+++ |...++
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccc--cchhHHHHHHHhhhhHhhcCchHhhccch
Confidence 4567778899999999999887653 22222344567999999 8887 333332 347899999999999 877765
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecc--cc--cccCcc-cccCCccEEEEec-ccccccccccccccccccccCcccc
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSC--RG--KDLTWL-VFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNI 241 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~--~~l~~l-~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
..--.. ..--.+|+.|+|+|| ++ .++..+ ..+|+|..|+|++ +.++.-.. ..+..
T Consensus 276 ~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~------------~~~~k 336 (419)
T KOG2120|consen 276 KVTVAV-------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF------------QEFFK 336 (419)
T ss_pred hhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH------------HHHHh
Confidence 421111 122367999999999 33 345444 5699999999999 66655322 26778
Q ss_pred Ccccceeecccccccccc-cCCCCCCCCccEEEEccCCC
Q 037371 242 FARLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQ 279 (330)
Q Consensus 242 ~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~ 279 (330)
|+.|++|.++.|..+..- .......|+|..|++.+|-.
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 999999999999776542 33355699999999999854
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=3.3e-10 Score=91.39 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=31.2
Q ss_pred hhhccccccEeecCCCCCcccChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
.+.+...+++|+|+++.|+.+. .++ .+.+|+.|++++|.+ ..++. +..+++|++|++++|.+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~--l~~L~~L~~L~L~~N~I------------- 76 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEG--LPGLPRLKTLDLSNNRI------------- 76 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---------------
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccC--ccChhhhhhcccCCCCC-------------
Confidence 3445567899999999888773 465 578899999999866 55554 77889999999999888
Q ss_pred CCchhhHHHh-ccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 88 DDAEPLMKEL-LGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 88 ~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
.. +...+ ..+++|++|.+++|.+..+.++... ..+++|+.|++
T Consensus 77 --~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L-~~l~~L~~L~L 120 (175)
T PF14580_consen 77 --SS-ISEGLDKNLPNLQELYLSNNKISDLNELEPL-SSLPKLRVLSL 120 (175)
T ss_dssp ---S--CHHHHHH-TT--EEE-TTS---SCCCCGGG-GG-TT--EEE-
T ss_pred --Cc-cccchHHhCCcCCEEECcCCcCCChHHhHHH-HcCCCcceeec
Confidence 21 22233 3578888888888876554443222 22444555555
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=1.3e-09 Score=87.85 Aligned_cols=69 Identities=32% Similarity=0.334 Sum_probs=12.8
Q ss_pred CCcccChhhhcCcccceeccCCCCCCCCCchhhhC-CCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCc
Q 037371 25 NITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS-GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHL 103 (330)
Q Consensus 25 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 103 (330)
.|.+.|. +.+..+++.|++++|.+ ..+.. ++ .+.+|+.|++++|.+ .....+..+++|
T Consensus 8 ~i~~~~~-~~n~~~~~~L~L~~n~I-~~Ie~--L~~~l~~L~~L~Ls~N~I-----------------~~l~~l~~L~~L 66 (175)
T PF14580_consen 8 MIEQIAQ-YNNPVKLRELNLRGNQI-STIEN--LGATLDKLEVLDLSNNQI-----------------TKLEGLPGLPRL 66 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS-------------------S--TT----TT-
T ss_pred ccccccc-ccccccccccccccccc-ccccc--hhhhhcCCCEEECCCCCC-----------------ccccCccChhhh
Confidence 3444443 34555677788877766 33332 44 467778888887777 222345556667
Q ss_pred ceeeEEEechh
Q 037371 104 NVLSWSFRSSL 114 (330)
Q Consensus 104 ~~L~l~~~~~~ 114 (330)
++|++++|.+.
T Consensus 67 ~~L~L~~N~I~ 77 (175)
T PF14580_consen 67 KTLDLSNNRIS 77 (175)
T ss_dssp -EEE--SS---
T ss_pred hhcccCCCCCC
Confidence 77766666533
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.1e-09 Score=93.06 Aligned_cols=216 Identities=18% Similarity=0.105 Sum_probs=144.1
Q ss_pred hhccccccEeecCCCC-------Cc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc--
Q 037371 10 ISNLVSLHHLDLSRTN-------IT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL-- 78 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~-------~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~-- 78 (330)
+.-+..|.+|-+++.. |. .+|..+.-+.+|+.+.++.|.- ..+-. +...-+.|+++.+....+...+
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~-~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVD-IELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheec-eeecCchhheeeeecccccccccc
Confidence 3445678888887652 22 4566677788899999988743 22222 1234456888887765542211
Q ss_pred --cc-c--cCccccC-CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccc
Q 037371 79 --EE-E--EGSVLCD-DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM 152 (330)
Q Consensus 79 --~~-~--~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 152 (330)
+. + +|+..++ ..+.....+..-+.|.++++++|.+..+.+-+ .+.+.++.|+++.+. ...+..++.+
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv---KL~Pkir~L~lS~N~----i~~v~nLa~L 328 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV---KLAPKLRRLILSQNR----IRTVQNLAEL 328 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh---hhccceeEEeccccc----eeeehhhhhc
Confidence 00 0 0111111 01112222223345778899999887776544 456678888884333 2233458899
Q ss_pred cCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccccccccccc
Q 037371 153 ENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDIS 232 (330)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 232 (330)
++|+.||+++|.++.+.. | ...+-|++.|.|.+|.+.+++.++.+-+|..|++++|+++.+...
T Consensus 329 ~~L~~LDLS~N~Ls~~~G-w--------h~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV------- 392 (490)
T KOG1259|consen 329 PQLQLLDLSGNLLAECVG-W--------HLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEV------- 392 (490)
T ss_pred ccceEeecccchhHhhhh-h--------HhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHh-------
Confidence 999999999998886532 2 357889999999999999999999999999999999999888432
Q ss_pred ccccCccccCcccceeeccccc
Q 037371 233 EIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
..++.+|.|+.+.+.+++
T Consensus 393 ----~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 ----NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----cccccccHHHHHhhcCCC
Confidence 378899999999988874
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=5.5e-09 Score=69.35 Aligned_cols=60 Identities=30% Similarity=0.510 Sum_probs=52.9
Q ss_pred ccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 14 VSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
++|++|++++|++..+|. .+..+++|++|++++|.+ ..+++.++.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCcC
Confidence 478999999999999886 678899999999999987 677776799999999999999864
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.6e-10 Score=95.92 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=92.9
Q ss_pred ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371 38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117 (330)
Q Consensus 38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 117 (330)
.|+++|++...+...--..+++.+.+|+.|.+.++.+ ...+...+++..+|+.|+++.+....-.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L---------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL---------------DDPIVNTIAKNSNLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc---------------CcHHHHHHhccccceeeccccccccchh
Confidence 3566666554443222233455566666666666555 4455555666666666666654432222
Q ss_pred HhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-cc-CcceeeeCcccccCccCCCCCCCccEEEEecc
Q 037371 118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SS-KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC 195 (330)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 195 (330)
.+.-....+..|.+|++.|.........+..-.--++|..|+++ +. .+..-..+.. ...+++|..|+|++|
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-------~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-------VRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-------HHhCCceeeeccccc
Confidence 22222333445555555333211111111111223456666666 21 1111111111 245777888888888
Q ss_pred -cccc--cCcccccCCccEEEEec-ccccccccccccccccccccCccccCcccceeeccccc
Q 037371 196 -RGKD--LTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 196 -~~~~--l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
.+++ ...+.+++.|++|.++. ..+ ++... ..+...|+|.+|++.+|-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~~---------~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPETL---------LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCC---ChHHe---------eeeccCcceEEEEecccc
Confidence 5544 33566788888888887 333 22110 156677888888888883
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.74 E-value=2e-09 Score=93.26 Aligned_cols=118 Identities=14% Similarity=0.093 Sum_probs=54.8
Q ss_pred cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc------cCcccccCCccEEEEeccccccc
Q 037371 149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
+...+.|+.+.+..|.+..-.... -.....++++|+.|+|++|.++. ...+..+++|+.|.++++.++.-
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~a----l~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTA----LAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHhccccceEEEecccccCchhHH----HHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 445556666666544433211100 01112455666666666663332 11345566666666666555544
Q ss_pred ccccccccccccccCccccCcccceeeccccccccc----ccCCCCCCCCccEEEEccC
Q 037371 223 ISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS----VYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~i~~c 277 (330)
+.....- +....+|+|+.|.+.++.--.+ +.......|.|+.|.+.+|
T Consensus 257 Ga~a~~~-------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 257 GAIAFVD-------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred cHHHHHH-------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 3321111 1223356666666666522111 1111223566666666665
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1e-08 Score=94.84 Aligned_cols=185 Identities=25% Similarity=0.322 Sum_probs=129.8
Q ss_pred ChhhhccccccEeecCCCCCcccChhhhcCc-ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 7 PSGISNLVSLHHLDLSRTNITGLPQELKALE-KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 7 p~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
+..+..+..++.|++.++.+.++|.....+. +|+.|++++|.+ ..+|.. ++.+++|+.|+++.|.+ +
T Consensus 109 ~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l-~--------- 176 (394)
T COG4886 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDL-S--------- 176 (394)
T ss_pred chhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchh-h---------
Confidence 3445666778999999999888888777775 899999999866 666544 78899999999999877 1
Q ss_pred ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCc
Q 037371 86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKL 165 (330)
Q Consensus 86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 165 (330)
.++.....++.|+.|++++|.+..++... .....|++|.+.-+. .......+..+.++..+.+.++++
T Consensus 177 ------~l~~~~~~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~---~~~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 177 ------DLPKLLSNLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNS---IIELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ------hhhhhhhhhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCc---ceecchhhhhcccccccccCCcee
Confidence 34444447888899999988876655432 123346666662211 122334566777777777666666
Q ss_pred ceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccc
Q 037371 166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIIS 224 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~ 224 (330)
... +. ..+.+++++.|++++|.+.+++.++.+.+|+.|+++++.+..+.+
T Consensus 245 ~~~-~~--------~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 EDL-PE--------SIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eec-cc--------hhccccccceeccccccccccccccccCccCEEeccCccccccch
Confidence 542 11 135667789999998888887778888999999998877666544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=6.7e-09 Score=90.03 Aligned_cols=230 Identities=17% Similarity=0.101 Sum_probs=130.2
Q ss_pred hhhccccccEeecCCCC---Cc-ccChh-------hhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCCC
Q 037371 9 GISNLVSLHHLDLSRTN---IT-GLPQE-------LKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~---~~-~lp~~-------l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~ 74 (330)
.+.+.++|+..+++.-. .. ++|.. +..+++|++|+|++|.+.-..+. .++++++.|++|++.+|++
T Consensus 53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 34555666666666531 11 45542 34577888888888877433332 3467888888888888887
Q ss_pred CCccccccCccccC--CchhhHHHhccCcCcceeeEEEechhh--HHHhhccccccCceEEEEEEeCCCCCCCc--cccc
Q 037371 75 WSVLEEEEGSVLCD--DAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPF--NVLH 148 (330)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~ 148 (330)
.. ..+..-+. -.-...+....-++||++...+|+... ...+.......+.|+.+.+..+.+...+. ....
T Consensus 133 -g~---~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 133 -GP---EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred -Ch---hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 22 11100000 000012234456678888888876533 22333334445667777774443212222 2345
Q ss_pred cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------Ccc-cccCCccEEEEecccccc
Q 037371 149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWL-VFVQNLKQLNMQGFTMEE 221 (330)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l-~~l~~L~~L~L~~~~l~~ 221 (330)
+.++++|+.||+..|.++.-..... .-....+++|+.|++++|.+..- ..+ ...|+|+.|.+.+|.++.
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~L----akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVAL----AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHH----HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 7788888888888776653221111 01124567788888888855441 122 347888888888877654
Q ss_pred cccccccccccccccCccccCcccceeeccccc
Q 037371 222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
-...... ......|.|++|.+++|.
T Consensus 285 da~~~la--------~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 285 DAALALA--------ACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHH--------HHHhcchhhHHhcCCccc
Confidence 3221000 133447888888888873
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.61 E-value=2.2e-09 Score=98.39 Aligned_cols=92 Identities=26% Similarity=0.358 Sum_probs=43.9
Q ss_pred CccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
+-.+|..++++..|.+|+++.|.++.+|..+..|+ |+.|-+++|++ +.+|+. ++....|.+||.+.|.+
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl-~~lp~~-ig~~~tl~~ld~s~nei-------- 178 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL-TSLPEE-IGLLPTLAHLDVSKNEI-------- 178 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc-ccCCcc-cccchhHHHhhhhhhhh--------
Confidence 33444445555555555555555444444443332 44444444433 444444 44444555555555444
Q ss_pred CccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
..++..++.+.+|+.|.+..|..
T Consensus 179 --------~slpsql~~l~slr~l~vrRn~l 201 (722)
T KOG0532|consen 179 --------QSLPSQLGYLTSLRDLNVRRNHL 201 (722)
T ss_pred --------hhchHHhhhHHHHHHHHHhhhhh
Confidence 13444555555555555554443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1e-07 Score=92.80 Aligned_cols=84 Identities=24% Similarity=0.335 Sum_probs=68.2
Q ss_pred cccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371 15 SLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL 93 (330)
Q Consensus 15 ~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (330)
.++.|+|+++.+. .+|..+..+++|+.|++++|.+.+.+|.. ++.+++|+.|++++|.+ .+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~l---------------sg~i 482 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSF---------------NGSI 482 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCC---------------CCCC
Confidence 3677888888877 67888888888888888888887788876 88888888888888877 4467
Q ss_pred HHHhccCcCcceeeEEEechh
Q 037371 94 MKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 94 ~~~l~~l~~L~~L~l~~~~~~ 114 (330)
+..++++++|+.|++++|...
T Consensus 483 P~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 483 PESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred chHHhcCCCCCEEECcCCccc
Confidence 778888888888888888765
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=1.2e-08 Score=93.73 Aligned_cols=182 Identities=22% Similarity=0.226 Sum_probs=132.9
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+.++|..++-+..|+.+.+..|.+..+|..+.++..|.+|+++.|++ ..+|.. +..|+ |+.|.+++|++
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~-lC~lp-Lkvli~sNNkl------ 155 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDG-LCDLP-LKVLIVSNNKL------ 155 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChh-hhcCc-ceeEEEecCcc------
Confidence 5678999999999999999999999999999999999999999999976 677876 77777 99999999887
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
+.++.+++.+.+|..|+.+.|.+..+..-. .....|+.|.+.-+. .......+..+ .|..||+
T Consensus 156 ----------~~lp~~ig~~~tl~~ld~s~nei~slpsql---~~l~slr~l~vrRn~---l~~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 156 ----------TSLPEEIGLLPTLAHLDVSKNEIQSLPSQL---GYLTSLRDLNVRRNH---LEDLPEELCSL-PLIRLDF 218 (722)
T ss_pred ----------ccCCcccccchhHHHhhhhhhhhhhchHHh---hhHHHHHHHHHhhhh---hhhCCHHHhCC-ceeeeec
Confidence 257788888899999999988765543211 112223444441111 12223344544 4888999
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCc----ccccCCccEEEEecc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW----LVFVQNLKQLNMQGF 217 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~----l~~l~~L~~L~L~~~ 217 (330)
+||++..+.... .+++.|++|.|.+|.++.+++ -|..-=.++|+...+
T Consensus 219 ScNkis~iPv~f---------r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SCNKISYLPVDF---------RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ccCceeecchhh---------hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 999998775443 578889999999997777652 233444566666554
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=3.6e-09 Score=93.70 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=58.0
Q ss_pred cccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccccc--Ccc-cccCCccEEEEecccccccccc
Q 037371 151 YMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDL--TWL-VFVQNLKQLNMQGFTMEEIISV 225 (330)
Q Consensus 151 ~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l--~~l-~~l~~L~~L~L~~~~l~~~~~~ 225 (330)
.+..|+.|..+ |+.+++...... ..+..+|+.|-+++| .+++. ..+ .+.+.|+.+++.+.....-.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aL-------g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-- 362 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWAL-------GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-- 362 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHH-------hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--
Confidence 44555666655 555443332222 234466667777666 44442 223 24566666666652211110
Q ss_pred cccccccccccCccccCcccceeecccccccccc-----cCCCCCCCCccEEEEccCCCCCC
Q 037371 226 DKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV-----YPNPLPFPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~~~~L~~L~i~~c~~L~~ 282 (330)
+.. +.....+.|+.+.+++|..+.+. .....+...|+.+.+.+||.+..
T Consensus 363 -tL~-------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 363 -TLA-------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred -hHh-------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 000 13445677777777766555553 11223355666777777766543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2e-08 Score=93.30 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=117.3
Q ss_pred hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
..++.+++|+.|++.+|++.++...+..+++|++|++++|.+ +.+.. +..++.|+.|++.+|.+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I-~~i~~--l~~l~~L~~L~l~~N~i------------- 152 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKI-TKLEG--LSTLTLLKELNLSGNLI------------- 152 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccc-ccccc--hhhccchhhheeccCcc-------------
Confidence 347788899999999999988865578899999999999976 55554 77888899999999888
Q ss_pred CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
.-...+..++.|+.+++++|.+..+.... ......++.++++-+ .......+..+..+..+++..+.++.
T Consensus 153 ----~~~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n----~i~~i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 153 ----SDISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGN----SIREIEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred ----hhccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCC----chhcccchHHHHHHHHhhccccccee
Confidence 33445666888899999988877665520 122333444454111 11122233444444444555555554
Q ss_pred eeeCcccccCccCCCCCC--CccEEEEeccccccc-CcccccCCccEEEEeccccccc
Q 037371 168 MKIDSTEEVKKLFRNGFR--SLNTVVLRSCRGKDL-TWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~l-~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
+.. ...+. .|+.+++.++.+... ..+..++.+..|++.++.+..+
T Consensus 223 ~~~----------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 223 LEG----------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred ccC----------cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc
Confidence 421 11222 378888888866665 5566777788888877666555
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=3.5e-07 Score=84.60 Aligned_cols=189 Identities=22% Similarity=0.253 Sum_probs=102.6
Q ss_pred EeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCC-CCcEEEeccCCCCCccccccCccccCCchhhHHH
Q 037371 18 HLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS-KLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKE 96 (330)
Q Consensus 18 ~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (330)
.+++..+.+..-+..+..+..++.|++..+.+ ..++.. ...+. +|+.|++++|.+ . .++..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~-~~~~~~nL~~L~l~~N~i---------------~-~l~~~ 158 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPL-IGLLKSNLKELDLSDNKI---------------E-SLPSP 158 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccc-ccCccc-cccchhhcccccccccch---------------h-hhhhh
Confidence 46666665543344556667788888887766 556653 55553 788888888776 1 23356
Q ss_pred hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccc-ccccCccEEEEEccCcceeeeCcccc
Q 037371 97 LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
++.+++|+.|.++.|.+..+..... ....|+.|+++-+. ....... .....|++|.++.|.....
T Consensus 159 ~~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N~----i~~l~~~~~~~~~L~~l~~~~N~~~~~------- 224 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGNK----ISDLPPEIELLSALEELDLSNNSIIEL------- 224 (394)
T ss_pred hhccccccccccCCchhhhhhhhhh---hhhhhhheeccCCc----cccCchhhhhhhhhhhhhhcCCcceec-------
Confidence 7788888888888777655443221 23334444441111 0111111 2333366666664421111
Q ss_pred cCccCCCCCCCccEEEEecccccc-cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKD-LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
......+.++..+.+.++.+.. +..++.+++++.|+++++.+..+. .++.+.+|+.|++++..
T Consensus 225 --~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~--------------~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 225 --LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS--------------SLGSLTNLRELDLSGNS 288 (394)
T ss_pred --chhhhhcccccccccCCceeeeccchhccccccceeccccccccccc--------------cccccCccCEEeccCcc
Confidence 1112344555555555554444 334556666666666666665551 34555666666666553
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=3.7e-08 Score=84.02 Aligned_cols=133 Identities=20% Similarity=0.215 Sum_probs=83.3
Q ss_pred hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
+...+.|.++||++|.|+.+-.++.-+++++.|+++.|.+ ..+.. +..+++|++||+++|.. +
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~n--La~L~~L~~LDLS~N~L-s------------- 342 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQN--LAELPQLQLLDLSGNLL-A------------- 342 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehh--hhhcccceEeecccchh-H-------------
Confidence 3445678889999998888888888899999999999866 33333 67888999999999776 2
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcc
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLE 166 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 166 (330)
.+...-.++-++++|.++.|.+..+..+.+ ..+|..|++.-+.+ .....+..++++|+|+.+.+-+|.+.
T Consensus 343 --~~~Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 343 --ECVGWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --hhhhhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 233334467788888888877655444332 12244444411110 12222344555555555555544443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.3e-08 Score=82.94 Aligned_cols=68 Identities=19% Similarity=0.092 Sum_probs=41.5
Q ss_pred CCCCccEEEEecccccccC---cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371 183 GFRSLNTVVLRSCRGKDLT---WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV 259 (330)
Q Consensus 183 ~~~~L~~L~L~~~~~~~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 259 (330)
.|+++..+.+..|.+...+ ....+|.+--|.|+.+++..+... -.+..|+.|..|++.+.+-++.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv-----------D~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV-----------DALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH-----------HHHcCCchhheeeccCCcccccc
Confidence 4667777777666444433 244566666777777776666321 14556777777777777666555
Q ss_pred cC
Q 037371 260 YP 261 (330)
Q Consensus 260 ~~ 261 (330)
..
T Consensus 266 ~~ 267 (418)
T KOG2982|consen 266 RG 267 (418)
T ss_pred cC
Confidence 44
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.39 E-value=2e-08 Score=89.07 Aligned_cols=249 Identities=21% Similarity=0.184 Sum_probs=151.5
Q ss_pred hhccccccEeecCCCC-Cc--ccChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 10 ISNLVSLHHLDLSRTN-IT--GLPQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~-~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
-.++++++.|++.+|. ++ .+-..-..+++|++|++..|...+...- .....+++|++|+++.|.. |.+
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q------i~~-- 231 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ------ISG-- 231 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch------hhc--
Confidence 4677888888888884 33 1211224688888888888755454332 2345688888888888765 211
Q ss_pred ccCCchhhHHHhccCcCcceeeEEEechhhHH--------------------------HhhccccccCceEEEEE-EeCC
Q 037371 86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--------------------------KFLKYPKLVSITQSVWV-ECGT 138 (330)
Q Consensus 86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--------------------------~~~~~~~~~~~L~~L~l-~~~~ 138 (330)
.....-.+.++.++.+...++...... .+...-..+..|+.|.. +|..
T Consensus 232 -----~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 232 -----NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD 306 (483)
T ss_pred -----CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC
Confidence 111122223333333333322211111 12222223444666666 5655
Q ss_pred CCCCCcccccc-ccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccccc--C-cccccCCccEE
Q 037371 139 YTRPPFNVLHL-AYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDL--T-WLVFVQNLKQL 212 (330)
Q Consensus 139 ~~~~~~~~~~l-~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l--~-~l~~l~~L~~L 212 (330)
........+ .+.++|+.|.++ |.++++...... -..++.|+.+++.+| .+.+. . .-.+++.|+.|
T Consensus 307 --~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 307 --ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred --CchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-------hcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 344444444 477899999999 888887654433 245788999999999 33332 2 23468999999
Q ss_pred EEec-ccccccccccccccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCCCCc
Q 037371 213 NMQG-FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 213 ~L~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
.+++ ..+.+.+... +. ........|+.+.+.+|+.+.+-...... +++||.+.+.+|....+-++..+
T Consensus 378 slshce~itD~gi~~----l~----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 378 SLSHCELITDEGIRH----LS----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred Chhhhhhhhhhhhhh----hh----hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 9998 3443331110 00 14456788999999999998886655443 88999999999988776555443
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=1.2e-07 Score=62.82 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=51.6
Q ss_pred cccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371 37 EKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 37 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 112 (330)
++|++|++++|++ ..+|..++.++++|++|++++|.+ ....+..+..+++|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l---------------~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNL---------------TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSE---------------SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCcc---------------CccCHHHHcCCCCCCEEeCcCCc
Confidence 5799999999977 678877799999999999999998 43556678999999999998775
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.34 E-value=7.2e-07 Score=86.98 Aligned_cols=68 Identities=28% Similarity=0.499 Sum_probs=34.7
Q ss_pred CChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 6 LPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 6 lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
+|..++++++|++|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|.. ++++++|++|++++|.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECcCCcc
Confidence 4444555555555555555544 44545555555555555555554444443 45555555555555444
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=2e-06 Score=52.61 Aligned_cols=40 Identities=45% Similarity=0.580 Sum_probs=27.8
Q ss_pred ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCc
Q 037371 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIP 54 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p 54 (330)
++|++|++++|+|+.+|..+++|++|++|++++|.+ ..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i-~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI-SDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC-SBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC-CCCc
Confidence 367788888888877777777888888888887765 4444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1.5e-06 Score=74.21 Aligned_cols=214 Identities=16% Similarity=0.080 Sum_probs=133.6
Q ss_pred cccceeccCCCCCCCCCc-hhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371 37 EKLRYLNLDHTRFLSIIP-PQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 37 ~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 115 (330)
.-+..|.+.++.+...-. ..+-+..+.++.||+.+|.+ +. ...+...+.+++.|++|+++.|....
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i-Sd------------WseI~~ile~lP~l~~LNls~N~L~s 111 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI-SD------------WSEIGAILEQLPALTTLNLSCNSLSS 111 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh-cc------------HHHHHHHHhcCccceEeeccCCcCCC
Confidence 334456666665433221 22234577899999999998 44 45666778899999999999987653
Q ss_pred -HHHhhccccccCceEEEEEEeCCCCCCCcc-ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe
Q 037371 116 -VQKFLKYPKLVSITQSVWVECGTYTRPPFN-VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR 193 (330)
Q Consensus 116 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 193 (330)
+.++ .....+|++|.++-.. ..... ...+..+|.+++|+++.|.+.-+..+.... ..--+.+..|+..
T Consensus 112 ~I~~l---p~p~~nl~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~-----e~~s~~v~tlh~~ 181 (418)
T KOG2982|consen 112 DIKSL---PLPLKNLRVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI-----EDWSTEVLTLHQL 181 (418)
T ss_pred ccccC---cccccceEEEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhccccccc-----cccchhhhhhhcC
Confidence 2222 2234568888882222 12222 234678899999999866443332322211 0122457788888
Q ss_pred cc---cccccCccc-ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCC--CCCCC
Q 037371 194 SC---RGKDLTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN--PLPFP 267 (330)
Q Consensus 194 ~~---~~~~l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~ 267 (330)
+| .+....-++ -+|++..+.+-.+.++..... .....||.+-.|.+... ++.+|... ...||
T Consensus 182 ~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----------k~se~~p~~~~LnL~~~-~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 182 PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----------KGSEPFPSLSCLNLGAN-NIDSWASVDALNGFP 249 (418)
T ss_pred CcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----------ccCCCCCcchhhhhccc-ccccHHHHHHHcCCc
Confidence 88 333333333 389999999988877766431 15566777777777755 55554332 33499
Q ss_pred CccEEEEccCCCCCCCCC
Q 037371 268 KLKKIQVFHCRQLKKLPL 285 (330)
Q Consensus 268 ~L~~L~i~~c~~L~~lp~ 285 (330)
+|.-|.+.+-|-+..+-.
T Consensus 250 ~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhheeeccCCcccccccC
Confidence 999999998776665544
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.02 E-value=2.6e-07 Score=85.92 Aligned_cols=174 Identities=21% Similarity=0.226 Sum_probs=94.6
Q ss_pred ccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371 12 NLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE 91 (330)
Q Consensus 12 ~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 91 (330)
.+..++.++++.+.+.++-..+..+.+|..|++.+|.+ ..+... +..+++|++|++++|.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~-l~~~~~L~~L~ls~N~I----------------- 130 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENL-LSSLVNLQVLDLSFNKI----------------- 130 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccc-hhhhhcchheecccccc-----------------
Confidence 45566666677776665444567777888888877766 333332 55678888888888777
Q ss_pred hhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccc--cccccCccEEEEEccCcceee
Q 037371 92 PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH--LAYMENLQELELGSSKLEEMK 169 (330)
Q Consensus 92 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~ 169 (330)
.-...+..++.|+.|++.+|.+..+..+.. ...|+.++++... ...... +..+.+++.+.+..|.+..+.
T Consensus 131 ~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~----i~~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 131 TKLEGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNR----IVDIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ccccchhhccchhhheeccCcchhccCCcc----chhhhcccCCcch----hhhhhhhhhhhccchHHHhccCCchhccc
Confidence 233445566667788888777665444322 2334444441111 111111 355556666666655544332
Q ss_pred eCcccccCccCCCCCCCccEEEEecccccccCcccccCC--ccEEEEeccccccc
Q 037371 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQN--LKQLNMQGFTMEEI 222 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~--L~~L~L~~~~l~~~ 222 (330)
.- ..+..+..+.+..+.+..+..+..+.+ |+.+.+.++.+..+
T Consensus 203 ~~----------~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 203 GL----------DLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred ch----------HHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 11 122233334555554444444444444 67777777665554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=4.4e-07 Score=85.95 Aligned_cols=99 Identities=23% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.|..+.+++.=+++|+.|||+.|++.+. +.+..|++|++|||++|.+ ..+|.--...+. |+.|.+++|..
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l------ 244 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNAL------ 244 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchh-ccccccchhhhh-heeeeecccHH------
Confidence 45566677888889999999999999877 4789999999999999966 666751123344 99999998777
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHh
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF 119 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 119 (330)
....++.++++|+.|+++.|-+....++
T Consensus 245 -----------~tL~gie~LksL~~LDlsyNll~~hseL 272 (1096)
T KOG1859|consen 245 -----------TTLRGIENLKSLYGLDLSYNLLSEHSEL 272 (1096)
T ss_pred -----------HhhhhHHhhhhhhccchhHhhhhcchhh
Confidence 5567788888888888888766554443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=5.3e-06 Score=81.14 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=69.5
Q ss_pred ccccEeecCCCCCc--ccChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 14 VSLHHLDLSRTNIT--GLPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 14 ~~L~~L~L~~~~~~--~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
.+|++|+++|...- .=|..++ .+|.|+.|.+.+-.+..+--..+..++++|..||++++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---------------- 185 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---------------- 185 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc----------------
Confidence 46777777775321 2223333 3777777777664332221122355677777777777666
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcc----ccccccccCccEEEEEccCcc
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFN----VLHLAYMENLQELELGSSKLE 166 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~ 166 (330)
....+++++++|++|.+.+-.+....++..... ..+|+.||++.......... .+.-..+|+|+.||.+++.+.
T Consensus 186 -~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 186 -SNLSGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -cCcHHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 233667777777777666544444444444333 23366666622211011101 112234666777766654444
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.3e-05 Score=47.16 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCccEEEEecccccccCc-ccccCCccEEEEecccccccc
Q 037371 185 RSLNTVVLRSCRGKDLTW-LVFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 185 ~~L~~L~L~~~~~~~l~~-l~~l~~L~~L~L~~~~l~~~~ 223 (330)
++|++|++++|.+++++. +++|++|+.|++++|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 367888888888878776 888888888888888877663
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.75 E-value=9.7e-06 Score=68.59 Aligned_cols=126 Identities=19% Similarity=0.155 Sum_probs=66.8
Q ss_pred hhcCcccceeccCCCCCCCCCch---hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh------HHHhccCcCc
Q 037371 33 LKALEKLRYLNLDHTRFLSIIPP---QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL------MKELLGLKHL 103 (330)
Q Consensus 33 l~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~L 103 (330)
+-+|++|+..+++.|.+.-..|+ .+|++-+.|.||.+.+|+. .. +.| ...+.. .+...+-+.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp---~aG----~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GP---IAG----GRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-Cc---cch----hHHHHHHHHHHHHhhhccCCCc
Confidence 44678888888888877555543 3467777888888888776 21 222 111111 1223344567
Q ss_pred ceeeEEEechhhH--HHhhccccccCceEEEEEEeCCCCCCC---ccccccccccCccEEEEEccCcc
Q 037371 104 NVLSWSFRSSLAV--QKFLKYPKLVSITQSVWVECGTYTRPP---FNVLHLAYMENLQELELGSSKLE 166 (330)
Q Consensus 104 ~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~ 166 (330)
++..+..|+.... ..+...+.....|+.+.+..+++...+ .....+..+++|+.|+++.|.++
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 7777777665431 222222333445666666443321111 11223445566677777655554
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.72 E-value=1.4e-06 Score=82.62 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=57.7
Q ss_pred ccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccc
Q 037371 148 HLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDK 227 (330)
Q Consensus 148 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~ 227 (330)
.+..+++|++|||+.|.+..+.- .....+ .|+.|.|+||-++.+..+.++.+|+.|++++|-+.+-..-
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~--------l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL-- 272 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQ--------LSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSEL-- 272 (1096)
T ss_pred HHHhcccccccccccchhccccc--------cchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhh--
Confidence 56778888888888777775521 111223 3888888888777777778888888888888665544210
Q ss_pred cccccccccCccccCcccceeeccccc
Q 037371 228 LSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
..+..+..|+.|+|.+++
T Consensus 273 ---------~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 273 ---------EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ---------hHHHHHHHHHHHhhcCCc
Confidence 134556677777777654
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=6.7e-06 Score=80.44 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=85.5
Q ss_pred cCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCcc
Q 037371 101 KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKL 179 (330)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 179 (330)
.+|++|++++.....-.-..+.....+.|++|.+ +... ..........++|+|..|||++..++.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---------- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFPNLRSLDISGTNISNLS---------- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccCccceeecCCCCccCcH----------
Confidence 4677777776443321112233455667777777 4322 11222234567888888888876666541
Q ss_pred CCCCCCCccEEEEecccccc---cCcccccCCccEEEEecc-ccccc-ccccccccccccccCccccCcccceeeccccc
Q 037371 180 FRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGF-TMEEI-ISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 180 ~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~-~l~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
+.+.+++|+.|.+.+-.+.. +..+-+|.+|+.||+|.. ..... .. ..+. .....+|.|+.|+.++-.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii-~qYl-------ec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKII-EQYL-------ECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHH-HHHH-------HhcccCccccEEecCCcc
Confidence 24677888888887773333 445667888888888872 11111 11 1111 144557888888777542
Q ss_pred ccccccCC-CCCCCCccEEEEccCCC
Q 037371 255 NVKSVYPN-PLPFPKLKKIQVFHCRQ 279 (330)
Q Consensus 255 ~l~~l~~~-~~~~~~L~~L~i~~c~~ 279 (330)
--+++... ...=|+|+.+.+.+|..
T Consensus 262 i~~~~le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 262 INEEILEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred hhHHHHHHHHHhCccHhhhhhhhhhc
Confidence 21111111 11235555555555433
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=7.3e-05 Score=60.64 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=72.4
Q ss_pred ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc---cccccCcccccCCccEEEEeccccccc
Q 037371 146 VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC---RGKDLTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~---~~~~l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
...|.++++|..|.++.|+++.+.+... .-+++|+.|.+.+| .+.++..+..+|.|++|.+-+|.+++.
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~--------~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLD--------TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHK 128 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchh--------hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcc
Confidence 4568889999999999999998876654 45788999999999 556677888999999999999887665
Q ss_pred ccccccccccccccCccccCcccceeeccccc
Q 037371 223 ISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
.. + .. -.+..+|+|+.|++.+..
T Consensus 129 ~~---Y-R~-----yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KN---Y-RL-----YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cC---c-ee-----EEEEecCcceEeehhhhh
Confidence 22 0 00 156778999999998753
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.49 E-value=5.6e-05 Score=64.09 Aligned_cols=250 Identities=15% Similarity=0.046 Sum_probs=141.3
Q ss_pred hhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCC----CCchh------hhCCCCCCcEEEeccCC
Q 037371 9 GISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLS----IIPPQ------LISGFSKLEVLRLLSRG 73 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~----~~p~~------~~~~l~~L~~L~l~~~~ 73 (330)
.+.-+..+..++|+||.|. .+...+.+-.+|+..+++.- +.+ .++.+ ++-+++.|+..+++.|-
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445778899999999887 34445666777888877654 222 22221 25689999999999988
Q ss_pred CCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh---------HHHhhcc--ccccCceEEEEEEeCCCCCC
Q 037371 74 RWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA---------VQKFLKY--PKLVSITQSVWVECGTYTRP 142 (330)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------~~~~~~~--~~~~~~L~~L~l~~~~~~~~ 142 (330)
+... + ...+..-+.+...|.+|.+++|..-. +.++... ....+.|+++.. ..+...
T Consensus 104 fg~~---~--------~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic--grNRle 170 (388)
T COG5238 104 FGSE---F--------PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC--GRNRLE 170 (388)
T ss_pred cCcc---c--------chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe--ccchhc
Confidence 7211 1 23445667788899999999886422 1222111 122334555554 222122
Q ss_pred Cccc----cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEE
Q 037371 143 PFNV----LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQL 212 (330)
Q Consensus 143 ~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L 212 (330)
.... ..+....+|+.+.+..|.+..-..... .......+.+|+.|+|.+|.++.. ..+...+.|+.|
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L---~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTML---AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHH---HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 2211 124445688888888766653211111 011123457899999998855442 134567788999
Q ss_pred EEecccccccccccccccccccccCccccCcccceeeccccccc----ccccC---CCCCCCCccEEEEccCCCCCC
Q 037371 213 NMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNV----KSVYP---NPLPFPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 213 ~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~l~~---~~~~~~~L~~L~i~~c~~L~~ 282 (330)
.+.+|-+..-+..+.+-.+ .-..+|+|..|...+...- ..+.. ...+.|-|..|.+.+ ++++.
T Consensus 248 ~lnDClls~~G~~~v~~~f------~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRF------NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHh------hhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-Ccchh
Confidence 9988777665443222111 2234677777777654221 11111 123366666666665 34443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00073 Score=61.67 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=29.8
Q ss_pred hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccC
Q 037371 11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSR 72 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 72 (330)
..+.++.+|++++|.+..+|. --.+|+.|.+++|.....+|.. + ..+|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 345566666666666665552 1123666666665444444542 2 235666666655
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.34 E-value=0.00041 Score=56.40 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=55.8
Q ss_pred cEeecCCCCCcccChhhhc-CcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 17 HHLDLSRTNITGLPQELKA-LEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 17 ~~L~L~~~~~~~lp~~l~~-l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
+.+++++.++..+.. ++. +.....+|+++|.+ ..++. +..++.|.+|.+.+|.| +. ..+.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl-~~l~~--lp~l~rL~tLll~nNrI-t~--------------I~p~ 82 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDL-RKLDN--LPHLPRLHTLLLNNNRI-TR--------------IDPD 82 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccch-hhccc--CCCccccceEEecCCcc-ee--------------eccc
Confidence 566676665543311 222 33456677877755 44444 77888888888888877 22 2222
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
--.-+++|..|.+.+|.+..+.++... ..++.|++|.+
T Consensus 83 L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltl 120 (233)
T KOG1644|consen 83 LDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTL 120 (233)
T ss_pred hhhhccccceEEecCcchhhhhhcchh-ccCCccceeee
Confidence 223356677888888776655554322 22334555544
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=9.8e-05 Score=62.24 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=54.6
Q ss_pred hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCC--CCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHT--RFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~--~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
.-......|+.|++.++.++.+ ..+-.|++|++|.++.| .....++.- ...+++|++|++++|++.
T Consensus 37 gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~---------- 104 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK---------- 104 (260)
T ss_pred cccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc----------
Confidence 3344555666777776665533 23456778888888887 444555442 445688888888888772
Q ss_pred ccCCchhhHHHhccCcCcceeeEEEech
Q 037371 86 LCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
.-.....+..+++|..|.+.++..
T Consensus 105 ----~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 105 ----DLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred ----cccccchhhhhcchhhhhcccCCc
Confidence 113344455566666666665543
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.14 E-value=5.2e-05 Score=71.70 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=17.7
Q ss_pred cceeecccccccccccCCCCC--CCCccEEEEccCCCCCC
Q 037371 245 LEYLTMWRGTNVKSVYPNPLP--FPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 245 L~~L~l~~~~~l~~l~~~~~~--~~~L~~L~i~~c~~L~~ 282 (330)
++.|.+..|.....-...... +..++.+.+.+|+.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 555666655444432222211 34455555555554443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.07 E-value=0.00013 Score=55.64 Aligned_cols=87 Identities=23% Similarity=0.288 Sum_probs=68.2
Q ss_pred ccccEeecCCCCCcccCh---hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 14 VSLHHLDLSRTNITGLPQ---ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~---~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
+.+..++|+.|.+..+++ .+++..+|+..++++|.+ ..+|+.+..+++.+..|++++|.+ .
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~nei---------------s 90 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEI---------------S 90 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhh---------------h
Confidence 467788999998776665 456667788889999977 788888566677899999999877 2
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHH
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQ 117 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~ 117 (330)
..|.++..++.||.|++..|.+....
T Consensus 91 -dvPeE~Aam~aLr~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 91 -DVPEELAAMPALRSLNLRFNPLNAEP 116 (177)
T ss_pred -hchHHHhhhHHhhhcccccCccccch
Confidence 57788999999999999988765433
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.02 E-value=9.5e-05 Score=56.36 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=72.3
Q ss_pred hhhccccccEeecCCCCCcccChhh-hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQEL-KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
.+.+..+|...+|++|.+.++|+.+ .+.+-++.|++.+|++ .++|.+ +..|+.|+.|+++.|.+ +
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE-~Aam~aLr~lNl~~N~l-~----------- 113 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEE-LAAMPALRSLNLRFNPL-N----------- 113 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHH-HhhhHHhhhcccccCcc-c-----------
Confidence 3566678888899999999998877 4567899999999977 788988 88999999999999988 3
Q ss_pred CCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371 88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117 (330)
Q Consensus 88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 117 (330)
..++.+..+.++-.|+..+|....++
T Consensus 114 ----~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 114 ----AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred ----cchHHHHHHHhHHHhcCCCCccccCc
Confidence 34555666888888888887765543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=5.6e-05 Score=64.30 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=46.8
Q ss_pred cccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchh
Q 037371 13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEP 92 (330)
Q Consensus 13 l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (330)
+.+.+.|+..||++..+ +-..+|+.|++|.|+-|++. .+.. +.++++|++|++..|.|. .-.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~--------------sld 79 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIE--------------SLD 79 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccc--------------cHH
Confidence 34555666666666654 23456666666666666553 3332 556666666666666651 113
Q ss_pred hHHHhccCcCcceeeEEEec
Q 037371 93 LMKELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 93 ~~~~l~~l~~L~~L~l~~~~ 112 (330)
-..-+.++++||.|.+..|.
T Consensus 80 EL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 80 ELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHhcCchhhhHhhccCC
Confidence 34445566666666666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=7.1e-05 Score=63.70 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=77.0
Q ss_pred hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
+.+.+.+.|+.-||.+ .++.- ..+|+.|++|.++.|+| .....+.++++|++|++..|.+
T Consensus 16 sdl~~vkKLNcwg~~L-~DIsi--c~kMp~lEVLsLSvNkI-----------------ssL~pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGL-DDISI--CEKMPLLEVLSLSVNKI-----------------SSLAPLQRCTRLKELYLRKNCI 75 (388)
T ss_pred hHHHHhhhhcccCCCc-cHHHH--HHhcccceeEEeecccc-----------------ccchhHHHHHHHHHHHHHhccc
Confidence 3467788899988866 45443 67899999999999998 4566788999999999999999
Q ss_pred hhHHHhhccccccCceEEEEE---EeCCCCCCCc--cccccccccCccEEE
Q 037371 114 LAVQKFLKYPKLVSITQSVWV---ECGTYTRPPF--NVLHLAYMENLQELE 159 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l---~~~~~~~~~~--~~~~l~~l~~L~~L~ 159 (330)
..+.++.-+ ...++|+.|++ -|.+ ..+. -...+.-+|+|+.||
T Consensus 76 ~sldEL~YL-knlpsLr~LWL~ENPCc~--~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 76 ESLDELEYL-KNLPSLRTLWLDENPCCG--EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccHHHHHHH-hcCchhhhHhhccCCccc--ccchhHHHHHHHHcccchhcc
Confidence 888876544 33566899998 2433 2222 234577788888886
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.63 E-value=0.0068 Score=55.50 Aligned_cols=14 Identities=7% Similarity=-0.209 Sum_probs=8.5
Q ss_pred CCCCcEEEeccCCC
Q 037371 61 FSKLEVLRLLSRGR 74 (330)
Q Consensus 61 l~~L~~L~l~~~~~ 74 (330)
+.+++.|++++|.+
T Consensus 51 ~~~l~~L~Is~c~L 64 (426)
T PRK15386 51 ARASGRLYIKDCDI 64 (426)
T ss_pred hcCCCEEEeCCCCC
Confidence 55666666666544
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.53 E-value=0.00051 Score=64.97 Aligned_cols=174 Identities=25% Similarity=0.217 Sum_probs=101.5
Q ss_pred ccccccEeecCCC-CCcc--cChhhhcCcccceeccCCC-CCCCCCc---hhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371 12 NLVSLHHLDLSRT-NITG--LPQELKALEKLRYLNLDHT-RFLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEEEEGS 84 (330)
Q Consensus 12 ~l~~L~~L~L~~~-~~~~--lp~~l~~l~~L~~L~l~~~-~~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (330)
.++.|+.+.+.++ .+.. +-.....+++|+.|+++++ ......+ ......+.+|+.|+++.+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i--------- 256 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV--------- 256 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc---------
Confidence 4678888888887 3443 3345678899999999873 2222222 223456788999999988831
Q ss_pred cccCCchhhHHHhc-cCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEE
Q 037371 85 VLCDDAEPLMKELL-GLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELG 161 (330)
Q Consensus 85 ~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~ 161 (330)
.......+. .+++|++|.+.++....-..+......++.|++|++ .|.. ...... ....++++++.|.+.
T Consensus 257 -----sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~--~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 257 -----TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG--LTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred -----CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc--chHHHHHHHHHhCcchhhhhhh
Confidence 224444444 378899888666553223344444456777999999 7766 222222 224456666665443
Q ss_pred ccCcceeeeCcccccCccCCCCCCCccEEEEecc-ccc--ccC--cccccCCccEEEEecccc
Q 037371 162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGK--DLT--WLVFVQNLKQLNMQGFTM 219 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~--~l~--~l~~l~~L~~L~L~~~~l 219 (330)
. ...++.++.+.+.++ ... .+. ....+++++.+.+.....
T Consensus 330 ~------------------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 330 S------------------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred h------------------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 1 012445566666555 322 111 345677777777776333
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.00041 Score=58.52 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=66.3
Q ss_pred ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceee
Q 037371 28 GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLS 107 (330)
Q Consensus 28 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 107 (330)
++..-.-.+..|+.|++.++..+ .+-. +-.|++|+.|.++.|+.. . ...+......+++|++|+
T Consensus 34 ~~~gl~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~-~------------~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRR-V------------SGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred Ccccccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCccc-c------------cccceehhhhCCceeEEe
Confidence 34444456677777777776442 2222 667889999999998431 1 334444555669999999
Q ss_pred EEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE
Q 037371 108 WSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG 161 (330)
Q Consensus 108 l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (330)
+++|.+..+..+... ....+|.+|++ +|..-+....-...+.-+++|++|+-.
T Consensus 98 ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred ecCCccccccccchh-hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 998876543333222 12333566666 554421222222334555666666544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.0015 Score=33.21 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=12.7
Q ss_pred cccEeecCCCCCcccChhhhc
Q 037371 15 SLHHLDLSRTNITGLPQELKA 35 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~ 35 (330)
+|++|++++|.++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665443
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.0017 Score=52.83 Aligned_cols=65 Identities=23% Similarity=0.386 Sum_probs=43.6
Q ss_pred cccccccccCccEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccc--cCcccccCCccEEEEec
Q 037371 145 NVLHLAYMENLQELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKD--LTWLVFVQNLKQLNMQG 216 (330)
Q Consensus 145 ~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~ 216 (330)
....+..++.++.|.+. |.++.+...+.. -+..++|+.|+|++| .+++ +.++..+++|+.|.|.+
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l-------~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERL-------GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHh-------cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34456666777777777 777766554433 124577888888888 6666 45677777888777776
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.75 E-value=0.018 Score=27.15 Aligned_cols=16 Identities=50% Similarity=0.802 Sum_probs=7.2
Q ss_pred cccEeecCCCCCcccC
Q 037371 15 SLHHLDLSRTNITGLP 30 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp 30 (330)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655544
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=0.0079 Score=49.08 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=43.7
Q ss_pred CCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCC
Q 037371 62 SKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYT 140 (330)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~ 140 (330)
..++.+|.+++.+ .......+.+++.|+.|.+.++....-..+.......++|+.|++ .|..
T Consensus 101 ~~IeaVDAsds~I---------------~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r-- 163 (221)
T KOG3864|consen 101 VKIEAVDASDSSI---------------MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR-- 163 (221)
T ss_pred ceEEEEecCCchH---------------HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe--
Confidence 3578888888777 556677777777777777765543222222222223444555555 4444
Q ss_pred CCCccccccccccCccEEEE
Q 037371 141 RPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 141 ~~~~~~~~l~~l~~L~~L~l 160 (330)
++......+..+++|+.|.+
T Consensus 164 IT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 164 ITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred echhHHHHHHHhhhhHHHHh
Confidence 33333444444444444443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.24 E-value=0.61 Score=35.18 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=5.0
Q ss_pred ccccCCccEEEEe
Q 037371 203 LVFVQNLKQLNMQ 215 (330)
Q Consensus 203 l~~l~~L~~L~L~ 215 (330)
+.++++|+.+.+.
T Consensus 54 F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 54 FSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-EEEEET
T ss_pred eeccccccccccc
Confidence 3444445555443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.29 E-value=0.2 Score=37.91 Aligned_cols=86 Identities=13% Similarity=0.180 Sum_probs=48.6
Q ss_pred cCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 5 KLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 5 ~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
+++. .|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ ...++..++.++.+|+.+.+.. ..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~-------- 69 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NL-------- 69 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT--------
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cc--------
Confidence 4554 478888999999885 4666766 4677778999998775 3666666688888899999865 22
Q ss_pred CccccCCchhhHHHhccCcCcceeeEE
Q 037371 83 GSVLCDDAEPLMKELLGLKHLNVLSWS 109 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~ 109 (330)
.......+..+++|+.+.+.
T Consensus 70 -------~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 70 -------KSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --------EE-TTTTTT-TTECEEEET
T ss_pred -------cccccccccccccccccccC
Confidence 11122345567777766664
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.87 E-value=0.16 Score=26.71 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=11.8
Q ss_pred ccccEeecCCCCCcccChh
Q 037371 14 VSLHHLDLSRTNITGLPQE 32 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~ 32 (330)
.+|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.87 E-value=0.16 Score=26.71 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=11.8
Q ss_pred ccccEeecCCCCCcccChh
Q 037371 14 VSLHHLDLSRTNITGLPQE 32 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~ 32 (330)
.+|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.03 E-value=0.51 Score=24.78 Aligned_cols=17 Identities=18% Similarity=0.632 Sum_probs=11.7
Q ss_pred CCCccEEEEccCCCCCC
Q 037371 266 FPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 266 ~~~L~~L~i~~c~~L~~ 282 (330)
+++|+.|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777776654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.19 E-value=0.032 Score=46.73 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=74.1
Q ss_pred CccCCh-hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 3 LSKLPS-GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
++++|- .+........||++.+.+..+-..++.+..|..|+++.|.+ ..+|.+ +.....+++++...|..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d-~~q~~e~~~~~~~~n~~------- 100 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI-KFLPKD-AKQQRETVNAASHKNNH------- 100 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH-hhChhh-HHHHHHHHHHHhhccch-------
Confidence 456663 47777888999999998877777888899999999998865 677887 88888888888877544
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
...|.+....++++.++..++.+
T Consensus 101 ---------~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 101 ---------SQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ---------hhCCccccccCCcchhhhccCcc
Confidence 36788888999999988887764
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.18 E-value=0.66 Score=23.72 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=7.5
Q ss_pred CCCcEEEeccCCC
Q 037371 62 SKLEVLRLLSRGR 74 (330)
Q Consensus 62 ~~L~~L~l~~~~~ 74 (330)
++|++|++++|++
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 5667777777666
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.55 E-value=1.6 Score=23.05 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=12.6
Q ss_pred ccccEeecCCCCCcccCh
Q 037371 14 VSLHHLDLSRTNITGLPQ 31 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~ 31 (330)
++|++|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.06 E-value=3 Score=21.99 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=8.7
Q ss_pred ccccEeecCCCCCcc
Q 037371 14 VSLHHLDLSRTNITG 28 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~ 28 (330)
.+|++|+++.|+|++
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.82 E-value=0.31 Score=41.00 Aligned_cols=65 Identities=20% Similarity=0.118 Sum_probs=48.0
Q ss_pred hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
..|+-+..|..|+++.+.+..+|..++....++.+++..|.. ...|.. +.+.+.++.++..++.+
T Consensus 59 ~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~-~~~p~s-~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH-SQQPKS-QKKEPHPKKNEQKKTEF 123 (326)
T ss_pred cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch-hhCCcc-ccccCCcchhhhccCcc
Confidence 445666777778888877777888888888888888777644 566765 77788888888877665
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.75 E-value=10 Score=20.13 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=9.0
Q ss_pred CCCcEEEeccCCC
Q 037371 62 SKLEVLRLLSRGR 74 (330)
Q Consensus 62 ~~L~~L~l~~~~~ 74 (330)
++|++|++++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4577777777766
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.35 E-value=11 Score=36.05 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=14.0
Q ss_pred HhhccccchhhHhhhccceeecCCCC
Q 037371 304 WEELQWEDQATQNAFFSCAVLWEDPY 329 (330)
Q Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~ 329 (330)
.+...|+=+-+.+.|...--.+++||
T Consensus 557 ~e~~nWdy~~A~k~F~~~ks~~~ipa 582 (585)
T KOG3763|consen 557 LEQNNWDYERALKLFIELKSDHPIPA 582 (585)
T ss_pred HHHccCCHHHHHHHHHHhhcCCCCcc
Confidence 33466755555555555555555554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.14 E-value=5.9 Score=37.70 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCCCCccEEEEecccccccCcc----cccCCccEEEEecc--cccccccccccccccccccCccccCcccceeecccccc
Q 037371 182 NGFRSLNTVVLRSCRGKDLTWL----VFVQNLKQLNMQGF--TMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTN 255 (330)
Q Consensus 182 ~~~~~L~~L~L~~~~~~~l~~l----~~l~~L~~L~L~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 255 (330)
..++.+..+.+++|++.++..+ ...|+|+.|+|++| .+..... ..--....|+.|.+.+++-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e------------l~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE------------LDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh------------hhhhcCCCHHHeeecCCcc
Confidence 4567778888888855555433 24788888888886 3222210 0122345667777777755
Q ss_pred cccccCC-------CCCCCCccEEE
Q 037371 256 VKSVYPN-------PLPFPKLKKIQ 273 (330)
Q Consensus 256 l~~l~~~-------~~~~~~L~~L~ 273 (330)
-+..... ...||+|..|+
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeec
Confidence 4443222 11377776665
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.91 E-value=0.58 Score=44.33 Aligned_cols=173 Identities=19% Similarity=0.123 Sum_probs=80.2
Q ss_pred hhhccccccEeecCCCCCc-----ccChhhhcC-cccceeccCCCCCCCC----CchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 9 GISNLVSLHHLDLSRTNIT-----GLPQELKAL-EKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l-~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
.+....+|..|++++|.+. .+-..+... ..|++|++..|.+... +... +.....++.++++.|.+ ..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~-L~~~~~l~~l~l~~n~l-~~- 186 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV-LEKNEHLTELDLSLNGL-IE- 186 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH-HhcccchhHHHHHhccc-ch-
Confidence 4555667777777777666 111122222 4466666666644322 2222 44566677777777766 11
Q ss_pred ccccCccccCCchhhHHHhc----cCcCcceeeEEEechhh--HHHhhccccccCc-eEEEEEEeCCCCCCCcc----cc
Q 037371 79 EEEEGSVLCDDAEPLMKELL----GLKHLNVLSWSFRSSLA--VQKFLKYPKLVSI-TQSVWVECGTYTRPPFN----VL 147 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~----~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~~ 147 (330)
. ......+.+. ...++++|++.++.+.. ...+......... +.+|++.++. ..... ..
T Consensus 187 ----~-----g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~--l~d~g~~~L~~ 255 (478)
T KOG4308|consen 187 ----L-----GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK--LGDVGVEKLLP 255 (478)
T ss_pred ----h-----hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC--cchHHHHHHHH
Confidence 0 0112233333 35667777777665432 1112221122222 3445553222 11111 12
Q ss_pred ccccc-cCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371 148 HLAYM-ENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD 199 (330)
Q Consensus 148 ~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 199 (330)
.+..+ ..++.++++.+.++........ -....++.++.+.++++.+.+
T Consensus 256 ~l~~~~~~l~~l~l~~nsi~~~~~~~L~----~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 256 CLSVLSETLRVLDLSRNSITEKGVRDLA----EVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcccchhhhhhhhhcCCccccchHHHH----HHHhhhHHHHHhhcccCcccc
Confidence 23334 4566777775555543332221 011334467777776664433
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.11 E-value=8.8 Score=36.51 Aligned_cols=68 Identities=25% Similarity=0.253 Sum_probs=32.2
Q ss_pred ChhhhccccccEeecCCCCCc-----ccChhhh----cCcccceeccCCCCCCCC---CchhhhCCCCC-CcEEEeccCC
Q 037371 7 PSGISNLVSLHHLDLSRTNIT-----GLPQELK----ALEKLRYLNLDHTRFLSI---IPPQLISGFSK-LEVLRLLSRG 73 (330)
Q Consensus 7 p~~l~~l~~L~~L~L~~~~~~-----~lp~~l~----~l~~L~~L~l~~~~~~~~---~p~~~~~~l~~-L~~L~l~~~~ 73 (330)
.+.+....+++.++++.|.+. .+++.+. ...++++|+++.|..... .-..++...+. +..|++.+|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 344444566666666666543 2333333 355566666666643210 00112333444 4456666555
Q ss_pred C
Q 037371 74 R 74 (330)
Q Consensus 74 ~ 74 (330)
+
T Consensus 245 l 245 (478)
T KOG4308|consen 245 L 245 (478)
T ss_pred c
Confidence 5
Done!