Query 037371
Match_columns 330
No_of_seqs 152 out of 2177
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 6.7E-23 2.3E-27 183.3 16.9 238 13-309 80-318 (328)
2 4fcg_A Uncharacterized protein 99.9 2.2E-22 7.5E-27 179.9 14.5 209 1-276 91-310 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-23 3.8E-28 187.2 4.9 236 5-282 67-306 (313)
4 3o6n_A APL1; leucine-rich repe 99.9 5.2E-22 1.8E-26 181.7 15.0 257 2-284 56-334 (390)
5 3v47_A TOLL-like receptor 5B a 99.9 1.8E-21 6.1E-26 181.5 17.7 93 182-288 296-391 (455)
6 2z80_A TOLL-like receptor 2, v 99.9 9.1E-22 3.1E-26 177.7 14.5 247 1-287 41-296 (353)
7 2id5_A Lingo-1, leucine rich r 99.9 3E-21 1E-25 181.1 17.3 253 1-287 42-315 (477)
8 3zyj_A Leucine-rich repeat-con 99.9 1.2E-21 4.2E-26 182.0 14.4 232 2-278 54-290 (440)
9 3zyi_A Leucine-rich repeat-con 99.9 1.5E-21 5.1E-26 182.1 14.1 232 2-278 65-301 (452)
10 2id5_A Lingo-1, leucine rich r 99.9 5.7E-21 1.9E-25 179.3 17.4 250 2-283 22-287 (477)
11 3oja_B Anopheles plasmodium-re 99.9 1.6E-21 5.6E-26 188.0 13.7 257 2-285 62-341 (597)
12 4eco_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 194.1 8.6 255 2-288 194-508 (636)
13 1xku_A Decorin; proteoglycan, 99.9 1.4E-20 4.8E-25 168.2 17.3 240 1-288 41-283 (330)
14 4fmz_A Internalin; leucine ric 99.9 5.2E-21 1.8E-25 172.1 14.2 237 1-283 76-326 (347)
15 3v47_A TOLL-like receptor 5B a 99.9 3.4E-21 1.2E-25 179.6 12.8 241 8-284 73-412 (455)
16 1xku_A Decorin; proteoglycan, 99.8 1.3E-20 4.3E-25 168.5 14.9 206 2-253 63-273 (330)
17 1o6v_A Internalin A; bacterial 99.8 6E-20 2E-24 171.9 19.0 248 2-283 57-324 (466)
18 3o6n_A APL1; leucine-rich repe 99.8 1.3E-20 4.5E-25 172.3 13.9 233 1-278 79-350 (390)
19 3rgz_A Protein brassinosteroid 99.8 5.7E-21 1.9E-25 189.4 12.1 248 5-286 409-723 (768)
20 4ecn_A Leucine-rich repeat pro 99.8 4E-21 1.4E-25 191.0 11.0 254 2-288 436-748 (876)
21 2z66_A Variable lymphocyte rec 99.8 4.4E-21 1.5E-25 169.6 9.7 208 3-277 19-233 (306)
22 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-20 4.3E-25 165.1 12.4 209 2-277 22-235 (285)
23 3t6q_A CD180 antigen; protein- 99.8 7.4E-21 2.5E-25 183.6 11.8 249 2-284 265-539 (606)
24 3t6q_A CD180 antigen; protein- 99.8 1.3E-20 4.3E-25 182.0 13.4 243 1-278 288-558 (606)
25 3o53_A Protein LRIM1, AGAP0063 99.8 5.9E-21 2E-25 169.8 10.1 219 10-279 30-249 (317)
26 4fmz_A Internalin; leucine ric 99.8 2.7E-20 9.2E-25 167.4 14.2 228 1-278 98-344 (347)
27 4ecn_A Leucine-rich repeat pro 99.8 2.1E-20 7.1E-25 185.8 14.3 258 6-300 533-837 (876)
28 2ft3_A Biglycan; proteoglycan, 99.8 8.5E-21 2.9E-25 169.8 9.6 230 1-278 64-305 (332)
29 1ogq_A PGIP-2, polygalacturona 99.8 5.6E-21 1.9E-25 169.7 8.3 231 14-286 50-287 (313)
30 2ft3_A Biglycan; proteoglycan, 99.8 1.6E-20 5.5E-25 168.1 11.3 239 1-288 43-284 (332)
31 3rgz_A Protein brassinosteroid 99.8 2.2E-21 7.4E-26 192.4 6.2 250 5-286 284-557 (768)
32 4eco_A Uncharacterized protein 99.8 1.5E-20 5E-25 182.6 11.8 248 6-288 291-586 (636)
33 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-20 6.6E-25 180.7 11.5 236 9-290 302-543 (606)
34 3oja_B Anopheles plasmodium-re 99.8 4.4E-20 1.5E-24 178.0 13.7 233 1-278 85-356 (597)
35 3oja_A Leucine-rich immune mol 99.8 2.5E-20 8.5E-25 175.3 10.4 225 5-280 21-250 (487)
36 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-19 4.5E-24 171.8 15.4 94 1-113 31-127 (520)
37 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-19 3.7E-24 173.4 13.9 72 1-73 60-134 (549)
38 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-19 4.6E-24 168.9 14.2 186 2-223 53-249 (457)
39 2xwt_C Thyrotropin receptor; s 99.8 2.1E-19 7.3E-24 153.2 14.3 206 3-280 23-239 (239)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.9E-19 1.3E-23 170.2 17.7 96 1-114 62-159 (562)
41 1o6v_A Internalin A; bacterial 99.8 2E-19 6.7E-24 168.4 15.0 249 1-284 78-347 (466)
42 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 165.4 16.1 231 15-289 44-276 (440)
43 2o6q_A Variable lymphocyte rec 99.8 2.3E-19 7.9E-24 155.8 13.7 196 15-277 17-215 (270)
44 2z62_A TOLL-like receptor 4, v 99.8 1.6E-19 5.4E-24 157.3 12.6 208 2-277 18-234 (276)
45 3zyi_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 166.1 15.3 231 15-289 55-287 (452)
46 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6E-24 162.6 12.8 241 1-278 62-312 (353)
47 1ozn_A Reticulon 4 receptor; N 99.8 2.2E-19 7.4E-24 157.2 12.4 191 1-254 42-236 (285)
48 3vq2_A TLR4, TOLL-like recepto 99.8 2.6E-19 8.9E-24 172.8 12.8 116 2-134 43-160 (606)
49 2z66_A Variable lymphocyte rec 99.8 6.3E-19 2.1E-23 155.8 13.5 202 16-283 9-214 (306)
50 3j0a_A TOLL-like receptor 5; m 99.8 7.6E-19 2.6E-23 175.8 15.7 96 4-113 62-160 (844)
51 2z7x_B TOLL-like receptor 1, v 99.8 3.3E-18 1.1E-22 162.1 19.3 93 1-114 10-103 (520)
52 3j0a_A TOLL-like receptor 5; m 99.8 8.7E-19 3E-23 175.4 15.5 110 8-134 42-155 (844)
53 4ay9_X Follicle-stimulating ho 99.8 2.3E-18 7.7E-23 155.2 16.8 230 1-276 19-255 (350)
54 2o6q_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 150.5 14.7 188 1-254 26-216 (270)
55 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-18 4.5E-23 170.1 15.7 73 1-74 35-109 (680)
56 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-18 4.7E-23 162.1 15.0 212 8-284 36-249 (457)
57 1ziw_A TOLL-like receptor 3; i 99.8 2.9E-19 9.8E-24 174.8 10.5 244 2-286 340-602 (680)
58 1wwl_A Monocyte differentiatio 99.8 3.5E-20 1.2E-24 164.4 3.3 236 10-285 39-291 (312)
59 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 3.9E-23 153.0 12.6 198 9-276 5-204 (290)
60 1h6u_A Internalin H; cell adhe 99.8 1.3E-18 4.4E-23 154.1 13.0 191 9-253 36-227 (308)
61 2z63_A TOLL-like receptor 4, v 99.8 2.9E-18 1E-22 164.1 16.1 48 238-287 465-513 (570)
62 2z63_A TOLL-like receptor 4, v 99.8 6.6E-19 2.3E-23 168.6 11.2 235 5-280 273-531 (570)
63 4g8a_A TOLL-like receptor 4; l 99.8 4.8E-18 1.6E-22 164.3 16.9 117 1-134 62-180 (635)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.4E-17 8.3E-22 157.7 21.5 112 1-134 41-153 (562)
65 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-18 5.5E-23 165.3 13.2 193 1-222 15-211 (549)
66 3rfs_A Internalin B, repeat mo 99.8 8.6E-19 2.9E-23 152.4 10.2 208 10-291 37-246 (272)
67 1wwl_A Monocyte differentiatio 99.7 3.4E-19 1.2E-23 158.0 4.3 230 2-277 54-306 (312)
68 1h6u_A Internalin H; cell adhe 99.7 5E-18 1.7E-22 150.3 11.7 183 1-224 51-234 (308)
69 3o53_A Protein LRIM1, AGAP0063 99.7 9.7E-20 3.3E-24 161.9 0.2 234 1-286 44-281 (317)
70 1jl5_A Outer protein YOPM; leu 99.7 1.5E-18 5E-23 161.8 6.3 232 1-286 21-275 (454)
71 2ca6_A RAN GTPase-activating p 99.7 2.7E-19 9.4E-24 163.3 1.0 250 3-278 21-314 (386)
72 3g06_A SSPH2 (leucine-rich rep 99.7 2.6E-17 9E-22 158.4 14.7 216 1-289 50-282 (622)
73 1p9a_G Platelet glycoprotein I 99.7 1.4E-17 4.9E-22 146.1 11.4 183 1-253 20-205 (290)
74 3rfs_A Internalin B, repeat mo 99.7 1.8E-17 6.1E-22 144.1 11.6 190 2-264 52-243 (272)
75 2z62_A TOLL-like receptor 4, v 99.7 8.2E-18 2.8E-22 146.4 9.4 190 1-253 38-234 (276)
76 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.6E-22 142.6 8.9 185 1-255 41-238 (239)
77 3m19_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 140.5 12.1 177 11-253 10-189 (251)
78 2ast_B S-phase kinase-associat 99.7 1.7E-18 5.9E-23 154.8 2.0 208 8-253 62-282 (336)
79 3m19_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 137.0 11.9 168 1-222 24-194 (251)
80 3oja_A Leucine-rich immune mol 99.7 3.9E-17 1.3E-21 153.5 8.8 209 28-291 21-237 (487)
81 4ezg_A Putative uncharacterize 99.7 6.6E-17 2.2E-21 133.6 8.7 152 11-219 41-193 (197)
82 4glp_A Monocyte differentiatio 99.7 1.7E-17 5.9E-22 146.9 5.1 225 15-277 65-304 (310)
83 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-16 7.2E-21 152.1 13.0 211 1-278 71-295 (622)
84 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.7E-21 139.3 11.2 174 9-222 41-215 (291)
85 1jl5_A Outer protein YOPM; leu 99.7 4.7E-16 1.6E-20 144.8 13.6 104 96-222 148-252 (454)
86 3goz_A Leucine-rich repeat-con 99.7 7.7E-18 2.6E-22 152.4 0.4 250 2-278 9-295 (362)
87 2ast_B S-phase kinase-associat 99.7 2.2E-17 7.6E-22 147.6 3.3 188 3-217 82-282 (336)
88 1m9s_A Internalin B; cell inva 99.6 2.5E-16 8.6E-21 151.3 9.6 175 9-223 38-213 (605)
89 2ca6_A RAN GTPase-activating p 99.6 3.3E-17 1.1E-21 149.5 2.4 217 6-254 52-314 (386)
90 4glp_A Monocyte differentiatio 99.6 2.1E-16 7.1E-21 139.9 7.5 205 12-254 89-305 (310)
91 1z7x_W Ribonuclease inhibitor; 99.6 1.7E-17 5.9E-22 154.6 -0.3 196 10-222 24-242 (461)
92 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.6E-20 137.0 10.5 209 1-252 40-255 (350)
93 1h6t_A Internalin B; cell adhe 99.6 1.3E-15 4.4E-20 133.6 8.9 186 14-253 24-210 (291)
94 1xeu_A Internalin C; cellular 99.6 2.3E-15 8E-20 130.0 9.8 170 12-222 17-187 (263)
95 3ogk_B Coronatine-insensitive 99.6 4.5E-16 1.6E-20 149.6 5.7 235 14-282 270-527 (592)
96 2o6s_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 125.9 8.2 59 15-74 29-88 (208)
97 1xeu_A Internalin C; cellular 99.6 1.5E-15 5E-20 131.3 7.6 166 35-253 17-182 (263)
98 4ezg_A Putative uncharacterize 99.6 3.7E-15 1.3E-19 123.0 8.1 150 34-253 41-191 (197)
99 1m9s_A Internalin B; cell inva 99.6 3.1E-15 1.1E-19 143.7 6.8 187 14-254 21-208 (605)
100 3goz_A Leucine-rich repeat-con 99.5 1.1E-15 3.8E-20 138.2 2.8 231 1-254 32-295 (362)
101 2v9t_B SLIT homolog 2 protein 99.5 1.1E-14 3.9E-19 122.3 8.5 155 11-220 9-165 (220)
102 2v9t_B SLIT homolog 2 protein 99.5 1.7E-14 5.8E-19 121.2 9.3 145 1-199 21-166 (220)
103 1z7x_W Ribonuclease inhibitor; 99.5 1.1E-16 3.9E-21 149.1 -4.6 260 5-281 47-354 (461)
104 2o6s_A Variable lymphocyte rec 99.5 2.2E-14 7.4E-19 119.3 9.8 149 16-218 9-159 (208)
105 2xot_A Amphoterin-induced prot 99.5 1.5E-14 5E-19 130.8 8.5 153 17-223 21-179 (361)
106 2xot_A Amphoterin-induced prot 99.5 1E-14 3.5E-19 131.8 7.4 169 1-220 28-202 (361)
107 3e6j_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 119.6 9.9 150 16-220 21-172 (229)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-14 1E-18 119.7 8.6 157 11-221 9-167 (220)
109 3cvr_A Invasion plasmid antige 99.5 2.1E-14 7.1E-19 136.7 8.4 175 15-254 60-241 (571)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 3.4E-14 1.1E-18 119.4 8.4 145 1-199 21-167 (220)
111 3ogk_B Coronatine-insensitive 99.5 2.4E-14 8.3E-19 137.5 7.2 231 10-278 216-499 (592)
112 2p1m_B Transport inhibitor res 99.5 1.6E-15 5.3E-20 145.8 -1.2 218 28-279 280-518 (594)
113 3e6j_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 114.0 13.2 150 38-254 20-170 (229)
114 4g8a_A TOLL-like receptor 4; l 99.5 6.4E-14 2.2E-18 135.3 9.5 205 9-253 366-577 (635)
115 1dce_A Protein (RAB geranylger 99.5 2.1E-16 7.2E-21 150.9 -8.1 208 11-273 346-566 (567)
116 3cvr_A Invasion plasmid antige 99.4 1.1E-13 3.8E-18 131.7 8.5 178 1-224 69-247 (571)
117 2ell_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 107.3 5.8 81 14-112 24-106 (168)
118 2wfh_A SLIT homolog 2 protein 99.4 1.5E-12 5.1E-17 107.0 8.3 127 17-198 13-139 (193)
119 2p1m_B Transport inhibitor res 99.4 5.5E-14 1.9E-18 135.0 -0.8 232 10-279 207-493 (594)
120 1w8a_A SLIT protein; signaling 99.3 1.5E-12 5.1E-17 106.8 6.7 131 16-199 10-140 (192)
121 1w8a_A SLIT protein; signaling 99.3 2.1E-12 7.2E-17 105.9 7.5 70 2-74 19-90 (192)
122 2je0_A Acidic leucine-rich nuc 99.3 1.5E-12 5E-17 102.2 5.0 84 12-113 15-100 (149)
123 3sb4_A Hypothetical leucine ri 99.3 4.7E-12 1.6E-16 112.8 7.6 60 13-74 48-136 (329)
124 2ell_A Acidic leucine-rich nuc 99.3 2.9E-12 1E-16 102.6 4.8 98 1-114 34-133 (168)
125 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 101.9 8.1 94 1-112 20-113 (193)
126 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.4E-16 99.7 6.4 62 9-74 14-76 (176)
127 2o6r_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 97.0 8.4 130 15-198 8-137 (177)
128 2je0_A Acidic leucine-rich nuc 99.2 5.9E-12 2E-16 98.7 3.5 98 1-115 27-127 (149)
129 2o6r_A Variable lymphocyte rec 99.2 5.1E-11 1.7E-15 96.2 8.8 69 3-74 19-88 (177)
130 1dce_A Protein (RAB geranylger 99.2 1.9E-11 6.5E-16 116.6 6.2 69 2-74 452-520 (567)
131 4b8c_D Glucose-repressible alc 99.2 1.5E-11 5.2E-16 120.8 5.3 92 4-113 214-305 (727)
132 2r9u_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 96.9 6.3 96 1-114 22-118 (174)
133 3g39_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 96.3 6.3 95 1-113 19-114 (170)
134 1ds9_A Outer arm dynein; leuci 99.1 7.8E-13 2.7E-17 109.1 -4.9 156 10-191 14-180 (198)
135 1ds9_A Outer arm dynein; leuci 99.1 2.1E-12 7.1E-17 106.5 -3.2 160 32-250 13-181 (198)
136 3sb4_A Hypothetical leucine ri 99.1 7.1E-10 2.4E-14 98.6 11.1 227 5-273 83-327 (329)
137 4fdw_A Leucine rich hypothetic 99.0 6.3E-09 2.2E-13 95.0 15.8 251 1-305 122-383 (401)
138 4fdw_A Leucine rich hypothetic 99.0 6.8E-09 2.3E-13 94.8 15.1 207 2-259 145-360 (401)
139 4b8c_D Glucose-repressible alc 99.0 2.8E-10 9.6E-15 111.8 4.5 97 1-115 234-330 (727)
140 3g39_A Variable lymphocyte rec 99.0 9.8E-10 3.3E-14 88.1 7.0 80 15-112 10-89 (170)
141 3un9_A NLR family member X1; l 98.9 3.8E-11 1.3E-15 108.7 -3.0 72 149-224 179-256 (372)
142 2r9u_A Variable lymphocyte rec 98.9 1.7E-09 5.7E-14 87.1 6.9 56 16-74 14-69 (174)
143 1a9n_A U2A', U2A'; complex (nu 98.9 1.5E-09 5E-14 87.5 6.3 117 1-134 29-147 (176)
144 2ifg_A High affinity nerve gro 98.9 8.1E-10 2.8E-14 98.9 5.1 95 1-113 19-115 (347)
145 2ifg_A High affinity nerve gro 98.6 3.4E-08 1.2E-12 88.2 6.6 82 17-115 11-94 (347)
146 2ra8_A Uncharacterized protein 98.6 8E-09 2.7E-13 92.8 1.3 68 150-222 249-322 (362)
147 2ra8_A Uncharacterized protein 98.5 1.4E-07 4.8E-12 84.7 7.5 144 93-253 164-317 (362)
148 3un9_A NLR family member X1; l 98.4 6E-08 2E-12 87.6 1.3 166 13-199 71-253 (372)
149 3e4g_A ATP synthase subunit S, 98.3 5.7E-07 2E-11 71.7 4.7 35 38-73 62-96 (176)
150 3e4g_A ATP synthase subunit S, 98.2 8.4E-07 2.9E-11 70.7 4.0 37 61-112 60-96 (176)
151 4fs7_A Uncharacterized protein 98.1 2.6E-05 8.8E-10 70.8 12.1 38 32-71 157-194 (394)
152 1io0_A Tropomodulin; LRR prote 98.0 2.7E-06 9.3E-11 68.8 3.2 64 10-74 32-105 (185)
153 4gt6_A Cell surface protein; l 98.0 8.4E-05 2.9E-09 67.4 13.4 92 181-289 261-354 (394)
154 3rw6_A Nuclear RNA export fact 98.0 1.2E-05 4E-10 68.7 7.0 37 13-49 169-208 (267)
155 4fs7_A Uncharacterized protein 97.8 0.00013 4.3E-09 66.2 10.1 216 9-276 157-375 (394)
156 3rw6_A Nuclear RNA export fact 97.7 4E-06 1.4E-10 71.7 -0.7 88 11-114 138-233 (267)
157 1io0_A Tropomodulin; LRR prote 97.6 2.5E-05 8.6E-10 63.0 3.2 98 6-115 57-165 (185)
158 4gt6_A Cell surface protein; l 97.6 0.00077 2.6E-08 61.0 12.8 226 3-276 102-366 (394)
159 4h09_A Hypothetical leucine ri 97.4 0.0014 4.9E-08 58.7 11.8 58 182-251 260-318 (379)
160 4h09_A Hypothetical leucine ri 96.4 0.015 5.1E-07 52.0 9.5 180 3-251 146-341 (379)
161 3rfe_A Platelet glycoprotein I 96.3 0.0042 1.4E-07 46.7 4.6 55 17-74 11-67 (130)
162 3rfe_A Platelet glycoprotein I 96.3 0.0052 1.8E-07 46.2 5.0 44 5-50 24-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0057 2E-07 49.4 3.8 66 58-134 66-133 (197)
164 1pgv_A TMD-1, tropomodulin TMD 92.7 0.11 3.6E-06 41.9 4.2 115 10-135 37-165 (197)
165 2lz0_A Uncharacterized protein 47.8 22 0.00074 24.7 4.0 45 25-71 7-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.7e-23 Score=183.29 Aligned_cols=238 Identities=19% Similarity=0.208 Sum_probs=185.1
Q ss_pred cccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchh
Q 037371 13 LVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEP 92 (330)
Q Consensus 13 l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (330)
..++++|++++|.+..+|..++++++|++|++++|.+. .+|.. ++++++|++|++++|.+ . .
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l---------------~-~ 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPL---------------R-A 141 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCC---------------C-C
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCcc---------------c-c
Confidence 37899999999999999999999999999999999885 88886 89999999999999988 3 4
Q ss_pred hHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371 93 LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS 172 (330)
Q Consensus 93 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 172 (330)
++..+.++++|++|++++|.... .....+.... ....+..+++|++|+++.|.++.+.. .
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~--------~~p~~~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~lp~-~ 201 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELT--------ELPEPLASTD-----------ASGEHQGLVNLQSLRLEWTGIRSLPA-S 201 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCC--------CCCSCSEEEC------------CCCEEESTTCCEEEEEEECCCCCCG-G
T ss_pred CcHHHhcCcCCCEEECCCCCCcc--------ccChhHhhcc-----------chhhhccCCCCCEEECcCCCcCcchH-h
Confidence 56678999999999999875321 0011111110 11246789999999999888774422 1
Q ss_pred ccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecc
Q 037371 173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMW 251 (330)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 251 (330)
...+++|++|++++|.+..++ .++.+++|++|++++|.+.+..+ ..++.+++|++|+++
T Consensus 202 --------l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p------------~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 202 --------IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP------------PIFGGRAPLKRLILK 261 (328)
T ss_dssp --------GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC------------CCTTCCCCCCEEECT
T ss_pred --------hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH------------HHhcCCCCCCEEECC
Confidence 357889999999999776654 68889999999999966655544 267889999999999
Q ss_pred cccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCCCCceEEeccHHHHhhccc
Q 037371 252 RGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAKGRRVVIEGTKKWWEELQW 309 (330)
Q Consensus 252 ~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~~~~~~i~~~~~~~~~l~~ 309 (330)
+|.....++.....+++|+.|++++|+.++.+|.....+. .+..+..+......+.+
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC---
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHHHhh
Confidence 9988888887777899999999999999999998887766 45555655555544443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.2e-22 Score=179.94 Aligned_cols=209 Identities=19% Similarity=0.267 Sum_probs=161.0
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+|..++++++|++|++++|.+..+|..++.+++|++|++++|.+. .+|.. ++++++|++|++++|..
T Consensus 91 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L~~L~L~~n~~------ 162 (328)
T 4fcg_A 91 VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRACPE------ 162 (328)
T ss_dssp SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGG-GGGCTTCCEEEEEEETT------
T ss_pred CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHH-HhcCcCCCEEECCCCCC------
Confidence 56789999999999999999999999999999999999999999999885 88887 99999999999999877
Q ss_pred ccCccccCCchhhHHHh---------ccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccc
Q 037371 81 EEGSVLCDDAEPLMKEL---------LGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY 151 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 151 (330)
.+..+..+ ..+++|++|++++|.+. .....+..
T Consensus 163 ---------~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------------~lp~~l~~ 204 (328)
T 4fcg_A 163 ---------LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----------------------------SLPASIAN 204 (328)
T ss_dssp ---------CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----------------------------CCCGGGGG
T ss_pred ---------ccccChhHhhccchhhhccCCCCCEEECcCCCcC-----------------------------cchHhhcC
Confidence 22334333 34677777777765422 22234777
Q ss_pred ccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccc-ccc-CcccccCCccEEEEecccccccccccccc
Q 037371 152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRG-KDL-TWLVFVQNLKQLNMQGFTMEEIISVDKLS 229 (330)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~l-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 229 (330)
+++|++|++++|.++.+... ...+++|++|++++|.+ ..+ ..++++++|++|+|++|.+.+..+
T Consensus 205 l~~L~~L~L~~N~l~~l~~~---------l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----- 270 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPA---------IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP----- 270 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGG---------GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-----
T ss_pred CCCCCEEEccCCCCCcCchh---------hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-----
Confidence 88888888887777754321 35678888999988833 333 357888899999998855544434
Q ss_pred cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEcc
Q 037371 230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH 276 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 276 (330)
..+..+++|++|++++|.....++.....+++|+.+.+..
T Consensus 271 -------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 271 -------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp -------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred -------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 1567788899999998888888887777788888887765
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-23 Score=187.17 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=106.4
Q ss_pred cCChhhhccccccEeecCC-CCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 5 KLPSGISNLVSLHHLDLSR-TNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~-~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
.+|..|+++++|++|++++ |.+. .+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l-------- 137 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNAL-------- 137 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEE--------
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCcc--------
Confidence 3555555555555555553 4444 45555555555555555555554444443 55555555555555554
Q ss_pred CccccCCchhhHHHhccCcCcceeeEEEechhh-HHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371 83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA-VQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG 161 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (330)
....+..+..+++|++|++++|.+.. +... .......|+.|++.... ........+..++ |+.|+++
T Consensus 138 -------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 138 -------SGTLPPSISSLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNR--LTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp -------ESCCCGGGGGCTTCCEEECCSSCCEEECCGG--GGCCCTTCCEEECCSSE--EEEECCGGGGGCC-CSEEECC
T ss_pred -------CCcCChHHhcCCCCCeEECcCCcccCcCCHH--HhhhhhcCcEEECcCCe--eeccCChHHhCCc-ccEEECc
Confidence 22344445555555555555554321 1100 00111134444441111 1222223333443 5555555
Q ss_pred ccCcceeeeCcccccCccCCCCCCCccEEEEecccccc-cCcccccCCccEEEEecccccccccccccccccccccCccc
Q 037371 162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD-LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN 240 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (330)
.|.++...+.. ...+++|++|++++|.+.. ++.+..+++|++|++++|.+.+..+ ..+.
T Consensus 206 ~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------------~~l~ 265 (313)
T 1ogq_A 206 RNMLEGDASVL--------FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP------------QGLT 265 (313)
T ss_dssp SSEEEECCGGG--------CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC------------GGGG
T ss_pred CCcccCcCCHH--------HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC------------hHHh
Confidence 44444332221 2344555555555553332 2334445555555555555543323 1344
Q ss_pred cCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCC
Q 037371 241 IFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 241 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~ 282 (330)
.+++|++|+++++.--..++.. ..+++|+.+++.+++.+..
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 4555555555555222233222 3355555555555444443
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=5.2e-22 Score=181.66 Aligned_cols=257 Identities=16% Similarity=0.178 Sum_probs=143.0
Q ss_pred CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
.+.++|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|.+. .+++.+++++++|++|++++|.+
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l----- 129 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL----- 129 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCcc-----
Confidence 45678876 6888899999999998886654 7788899999999988774 44444488899999999998887
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.......+.++++|++|++++|.+..... .....+.+|+.|++ +..- ... .+..+++|+.|
T Consensus 130 ----------~~l~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l---~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 130 ----------SSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL---THV---DLSLIPSLFHA 191 (390)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCC---SBC---CGGGCTTCSEE
T ss_pred ----------CcCCHHHhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcC---Ccc---cccccccccee
Confidence 21222335778888888888876543221 12233566777777 3221 111 23444455555
Q ss_pred EEEccCcceeeeCcccc--------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc-
Q 037371 159 ELGSSKLEEMKIDSTEE--------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS- 229 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~- 229 (330)
+++.+.++.+....... -...+...+++|++|++++|.+...+++..+++|++|+++++.+.++.+.....
T Consensus 192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 44443333221100000 000011223456666666665555555666666666666666555553320000
Q ss_pred -c-----cccccc----CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371 230 -D-----ISEIIG----SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP 284 (330)
Q Consensus 230 -~-----~~~~~~----~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp 284 (330)
. +.++.. .....+++|+.|+++++ .+..++.....+++|+.|++.+| .++.+|
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred ccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence 0 000000 02344556666666655 44444433334566666666664 455555
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.8e-21 Score=181.46 Aligned_cols=93 Identities=20% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371 182 NGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV 259 (330)
Q Consensus 182 ~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 259 (330)
..+++|++|++++|.+.... .+.++++|++|++++|.+.++.+ ..+..+++|+.|+++++ .+..+
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~ 362 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS------------RMFENLDKLEVLDLSYN-HIRAL 362 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG------------GGGTTCTTCCEEECCSS-CCCEE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh------------hHhcCcccCCEEECCCC-ccccc
Confidence 44566666666666554432 45666777777777766666644 26678899999999998 56665
Q ss_pred -cCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371 260 -YPNPLPFPKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 260 -~~~~~~~~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
+.....+++|++|+++++ +++.+|....
T Consensus 363 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 391 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTN-QLKSVPDGIF 391 (455)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred ChhhccccccccEEECCCC-ccccCCHhHh
Confidence 334556899999999995 7888887553
No 6
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=9.1e-22 Score=177.67 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=173.1
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
++++++|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.+. .++..+++++++|++|++++|.+
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l----- 112 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL----- 112 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcC-----
Confidence 46788998776 489999999999998877 7899999999999999774 44443499999999999999988
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.......+.++++|++|++++|.+..+... .....+.+|++|++ ++.. ........+..+++|++|
T Consensus 113 ----------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 113 ----------SNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMDT--FTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp ----------SSCCHHHHTTCTTCSEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEE
T ss_pred ----------CcCCHhHhCCCccCCEEECCCCCCcccCch-hhhccCCCCcEEECCCCcc--ccccCHHHccCCCCCCEE
Confidence 334455588999999999999876643320 12344677999999 5533 234444568899999999
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG 236 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 236 (330)
+++.|.++...+.. ...+++|++|++++|.+..++ .+..+++|+.|+++++.+..+......
T Consensus 180 ~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------- 243 (353)
T 2z80_A 180 EIDASDLQSYEPKS--------LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-------- 243 (353)
T ss_dssp EEEETTCCEECTTT--------TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred ECCCCCcCccCHHH--------HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------
Confidence 99988888664443 367889999999999776654 355689999999999988876442110
Q ss_pred CccccCcccceeecccccccc-----cccCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371 237 SEHNIFARLEYLTMWRGTNVK-----SVYPNPLPFPKLKKIQVFHCRQLKKLPLNS 287 (330)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~ 287 (330)
.....+.++.+++.++ .+. .++.....+++|+.|++++| +++.+|...
T Consensus 244 -~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~ 296 (353)
T 2z80_A 244 -TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI 296 (353)
T ss_dssp ----CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred -cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence 1222344444444443 111 12212233566666666664 555666543
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=181.13 Aligned_cols=253 Identities=17% Similarity=0.167 Sum_probs=165.7
Q ss_pred CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..++ ..|.++++|++|+|++|.+..+ |..+.++++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~i---- 116 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKI---- 116 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSSTTCTTCCEEECTTSCC----
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccccCCCCCCEEECCCCcc----
Confidence 4566664 4688899999999999988855 66788899999999988876 566665578889999999988887
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
....+..+..+++|+.|++++|.+..+.. ..+..+.+|+.|++.-.. ........+..+++|+.|
T Consensus 117 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 117 -----------VILLDYMFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp -----------CEECTTTTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEE
T ss_pred -----------ccCChhHccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEE
Confidence 33444556677777777777765433211 122234556666662212 122223335555666666
Q ss_pred EEEccCcceeeeCccccc----------------CccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371 159 ELGSSKLEEMKIDSTEEV----------------KKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME 220 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~ 220 (330)
+++.+.++.+....+... .........+|++|++++|.+..++ .+..+++|+.|+|++|.+.
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 665554444322111000 0000112236777777777666655 4678888999999888888
Q ss_pred ccccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCCCCCCCCC
Q 037371 221 EIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNS 287 (330)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~ 287 (330)
.+.+ ..+..+++|+.|+++++ .+..+... ...+++|+.|+++++ +++.+|...
T Consensus 262 ~~~~------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 262 TIEG------------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp EECT------------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred ccCh------------hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 7755 26778899999999988 55555433 445899999999996 777777654
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=182.05 Aligned_cols=232 Identities=17% Similarity=0.184 Sum_probs=172.8
Q ss_pred CCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
++.++|..+. +++++|+|++|.+..++ ..+..+++|++|++++|.+ ..++...+.++++|++|++++|.+
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~~l~~L~~L~L~~n~l------ 124 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRL------ 124 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGGGGTTCSSCCEEECCSSCC------
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChhhccCCccCCEEECCCCcC------
Confidence 5778888776 68999999999998665 5788999999999999977 455544589999999999999888
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.......+..+++|+.|++++|.+..+.. .....+.+|+.|++ ++.. ........+..+++|++|+
T Consensus 125 ---------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 125 ---------TTIPNGAFVYLSKLKELWLRNNPIESIPS--YAFNRIPSLRRLDLGELKR--LSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp ---------SSCCTTTSCSCSSCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTT--CCEECTTTTTTCSSCCEEE
T ss_pred ---------CeeCHhHhhccccCceeeCCCCcccccCH--HHhhhCcccCEeCCCCCCC--cceeCcchhhcccccCeec
Confidence 32334467889999999999887654322 12334567888888 5544 3333444678888899998
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.|.++.+. ....+++|++|+|++|.+..+ ..+.++++|+.|+|++|.+..+.+ .
T Consensus 192 L~~n~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~ 249 (440)
T 3zyj_A 192 LAMCNLREIP----------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER------------N 249 (440)
T ss_dssp CTTSCCSSCC----------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------T
T ss_pred CCCCcCcccc----------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh------------h
Confidence 8877777442 235678888999988866654 357888889999998888888765 2
Q ss_pred ccccCcccceeecccccccccccCCC-CCCCCccEEEEccCC
Q 037371 238 EHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCR 278 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~ 278 (330)
.+..+++|+.|+++++ .+..++... ..+++|+.|++.+++
T Consensus 250 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp SSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 6777888889988887 666666554 347888888887643
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.5e-21 Score=182.10 Aligned_cols=232 Identities=18% Similarity=0.168 Sum_probs=167.1
Q ss_pred CCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
++.++|..+. +++++|+|++|.+..+ |..+..+++|++|++++|.+. .++...+.++++|++|++++|.+
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l------ 135 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL------ 135 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCC------
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECCCCcC------
Confidence 5677887765 5899999999998865 557889999999999999774 44443488999999999999888
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.......+..+++|++|++++|.+..+.. .....+.+|+.|++ ++.. ........+..+++|++|+
T Consensus 136 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~~~~--l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 136 ---------TVIPSGAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRLDLGELKK--LEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp ---------SBCCTTTSSSCTTCCEEECCSCCCCEECT--TTTTTCTTCCEEECCCCTT--CCEECTTTTTTCTTCCEEE
T ss_pred ---------CccChhhhcccCCCCEEECCCCCcceeCH--hHHhcCCcccEEeCCCCCC--ccccChhhccCCCCCCEEE
Confidence 32344557788999999999887654321 12334566788887 5544 3333444577888888888
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.|.++.+. ....+++|++|+|++|.+..+ ..+.++++|+.|++++|.+..+.+ .
T Consensus 203 L~~n~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~ 260 (452)
T 3zyi_A 203 LGMCNIKDMP----------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER------------N 260 (452)
T ss_dssp CTTSCCSSCC----------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT------------T
T ss_pred CCCCcccccc----------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH------------H
Confidence 8877776442 235677888888888866554 357778888888888888877755 2
Q ss_pred ccccCcccceeecccccccccccCCCC-CCCCccEEEEccCC
Q 037371 238 EHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCR 278 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~ 278 (330)
.+..+++|+.|+++++ .+..++.... .+++|+.|++.+++
T Consensus 261 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 5677788888888887 6666555433 47788888877653
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=5.7e-21 Score=179.29 Aligned_cols=250 Identities=16% Similarity=0.184 Sum_probs=170.4
Q ss_pred CCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
++.++|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l------ 92 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRL------ 92 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC------
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcC------
Confidence 5788998775 5899999999999976 458899999999999999875544554 99999999999999988
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
.......+.++++|++|++++|.+.... ......+.+|+.|++.-+. ........+..+++|+.|++
T Consensus 93 ---------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 93 ---------KLIPLGVFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp ---------CSCCTTSSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEE
T ss_pred ---------CccCcccccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEEC
Confidence 3233445788999999999988765432 1223446779999993322 34444567889999999999
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccc-ccccccccccc--------
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFT-MEEIISVDKLS-------- 229 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~-l~~~~~~~~~~-------- 229 (330)
+.+.++.+....+ ..+++|+.|++++|.+..++ .+..+++|+.|+++++. +..++......
T Consensus 160 ~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 160 EKCNLTSIPTEAL--------SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp ESCCCSSCCHHHH--------TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCcCcccChhHh--------cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 9888876543332 45667777777777444432 35556666666666522 22221110000
Q ss_pred ---cccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCCCCC
Q 037371 230 ---DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQLKKL 283 (330)
Q Consensus 230 ---~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~l 283 (330)
.+...+...+..+++|+.|+++++ .+..+... ...+++|+.|++.++ ++..+
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 287 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVV 287 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEE
T ss_pred cCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceE
Confidence 000000024567889999999988 46665554 345899999999885 44443
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.6e-21 Score=188.00 Aligned_cols=257 Identities=16% Similarity=0.184 Sum_probs=141.5
Q ss_pred CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
.+..+|.. +.++++|++|++++|.+..+|. .+..+++|++|++++|.+.+ +|+.+++++++|++|++++|.+
T Consensus 62 ~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l----- 135 (597)
T 3oja_B 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDL----- 135 (597)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCC-----
Confidence 45677765 6888899999999988886654 78888899999998887744 4444478889999999988887
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
....+..++.+++|++|++++|.+..+.. ..+..+.+|+.|++ ++.. ... .+..+++|+.|
T Consensus 136 ----------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l---~~~---~~~~l~~L~~L 197 (597)
T 3oja_B 136 ----------SSLPRGIFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRL---THV---DLSLIPSLFHA 197 (597)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECTTSCC---SBC---CGGGCTTCSEE
T ss_pred ----------CCCCHHHhccCCCCCEEEeeCCcCCCCCh--hhhhcCCcCcEEECcCCCC---CCc---Chhhhhhhhhh
Confidence 22223335788888888888876544221 12233556777777 3322 111 23344445554
Q ss_pred EEEccCcceeeeCcccc--------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc-
Q 037371 159 ELGSSKLEEMKIDSTEE--------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS- 229 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~- 229 (330)
++++|.++.+....... -...+...+++|+.|++++|.+..++++..+++|+.|+|++|.+.++.+.....
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 44433333221100000 000001112455555555555555555555555555555555555543310000
Q ss_pred ------c-----ccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCC
Q 037371 230 ------D-----ISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPL 285 (330)
Q Consensus 230 ------~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 285 (330)
. +.+.+ .....+++|+.|+++++ .+..++.....+++|+.|++++| .+..+|.
T Consensus 278 ~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 278 QRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp SSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC
T ss_pred cCCCEEECCCCCCCCCC-cccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CCCCcCh
Confidence 0 00000 03344566666666665 34444433344666666666664 4555543
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.4e-22 Score=194.09 Aligned_cols=255 Identities=11% Similarity=0.118 Sum_probs=163.1
Q ss_pred CCccCChhhhccccccEeecCCCCCcc------------------cChhhh--cCcccceeccCCCCCCCCCchhhhCCC
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITG------------------LPQELK--ALEKLRYLNLDHTRFLSIIPPQLISGF 61 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~~l 61 (330)
.++.+|..|+++++|++|+|++|.++. +|..++ ++++|++|++++|.+.+.+|.. ++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTC
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcC
Confidence 455699999999999999999999997 999998 9999999999999998999986 9999
Q ss_pred CCCcEEEeccCC-CCCccccccCccccCCch-hhHHHhccC------cCcceeeEEEechhhHHHhhccccccCceEEEE
Q 037371 62 SKLEVLRLLSRG-RWSVLEEEEGSVLCDDAE-PLMKELLGL------KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVW 133 (330)
Q Consensus 62 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 133 (330)
++|++|++++|. + .+ .++..+.++ ++|++|++++|.+..++... ....+.+|+.|+
T Consensus 273 ~~L~~L~Ls~n~~l---------------~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~-~l~~l~~L~~L~ 336 (636)
T 4eco_A 273 PEMQLINVACNRGI---------------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET-SLQKMKKLGMLE 336 (636)
T ss_dssp SSCCEEECTTCTTS---------------CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH-HHTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC---------------ccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh-hhccCCCCCEEe
Confidence 999999999998 6 44 677777776 89999999988766433200 223355678887
Q ss_pred E-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCC-ccEEEEecccccccC-cccc--cCC
Q 037371 134 V-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRS-LNTVVLRSCRGKDLT-WLVF--VQN 208 (330)
Q Consensus 134 l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~l~-~l~~--l~~ 208 (330)
+ ++.. .+... .+..+++|+.|++++|.++.+... ...+++ |++|++++|.+..++ .+.. +++
T Consensus 337 L~~N~l---~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~---------l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 337 CLYNQL---EGKLP-AFGSEIKLASLNLAYNQITEIPAN---------FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp CCSCCC---EEECC-CCEEEEEESEEECCSSEEEECCTT---------SEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred CcCCcC---ccchh-hhCCCCCCCEEECCCCccccccHh---------hhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 7 3322 21222 667777777777776665533211 133444 556666555444433 2222 225
Q ss_pred ccEEEEecccccccccccccc--------------cc-----cccccCccccCcccceeecccccccccccCCCCC-C--
Q 037371 209 LKQLNMQGFTMEEIISVDKLS--------------DI-----SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-F-- 266 (330)
Q Consensus 209 L~~L~L~~~~l~~~~~~~~~~--------------~~-----~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~-- 266 (330)
|+.|++++|.+....+..... .+ ...+...+..+++|++|+++++ .+..++..... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 555555555444432211100 00 0000012334677777777776 45555544332 1
Q ss_pred -----CCccEEEEccCCCCCCCCCCCc
Q 037371 267 -----PKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 267 -----~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
++|+.|++++| +++.+|....
T Consensus 483 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 508 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFN-KLTKLSDDFR 508 (636)
T ss_dssp ECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred cccccCCccEEECcCC-cCCccChhhh
Confidence 17788888775 5667776544
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.4e-20 Score=168.25 Aligned_cols=240 Identities=17% Similarity=0.148 Sum_probs=182.1
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. +++++|++++|.++.+|. .+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.
T Consensus 41 ~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l-~~-- 114 (330)
T 1xku_A 41 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQL-KE-- 114 (330)
T ss_dssp SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCC-SB--
T ss_pred CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcC-Cc--
Confidence 35678887765 689999999999998776 7899999999999999885555665 99999999999999988 22
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
++..+. ++|++|++++|.+..... .....+.+|+.|++..............+..+++|+.|+
T Consensus 115 -------------l~~~~~--~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 115 -------------LPEKMP--KTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp -------------CCSSCC--TTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred -------------cChhhc--ccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 122222 689999999887654322 112335678888883222111123445688999999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.+.++.+.. ..+++|++|++++|.+... ..+..+++|+.|++++|.+.++.+ .
T Consensus 178 l~~n~l~~l~~-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~ 234 (330)
T 1xku_A 178 IADTNITTIPQ-----------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN------------G 234 (330)
T ss_dssp CCSSCCCSCCS-----------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT------------T
T ss_pred CCCCccccCCc-----------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh------------h
Confidence 99888775421 2237899999999976664 368899999999999999888865 2
Q ss_pred ccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371 238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
.+..+++|++|+++++ .+..++.....+++|++|++.++ .++.+|....
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f 283 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDF 283 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSS
T ss_pred hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhc
Confidence 6778899999999998 67777777777999999999995 7888876554
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5.2e-21 Score=172.09 Aligned_cols=237 Identities=17% Similarity=0.177 Sum_probs=129.3
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++. +..+++|++|++++|..
T Consensus 76 n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i-~~~~~--~~~l~~L~~L~l~~n~~------ 144 (347)
T 4fmz_A 76 NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI-SDISP--LANLTKMYSLNLGANHN------ 144 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC-CCCGG--GTTCTTCCEEECTTCTT------
T ss_pred Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc-cCchh--hccCCceeEEECCCCCC------
Confidence 35666665 888888888888888888775 578888888888888866 45555 77888888888888754
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
... ...+..+++|+.|+++++....... ...+.+|++|++ ++.. .. ...+..+++|+.|+
T Consensus 145 ---------~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l---~~--~~~~~~l~~L~~L~ 205 (347)
T 4fmz_A 145 ---------LSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQI---ED--ISPLASLTSLHYFT 205 (347)
T ss_dssp ---------CCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCC---CC--CGGGGGCTTCCEEE
T ss_pred ---------ccc-ccchhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCcc---cc--cccccCCCccceee
Confidence 111 2226666777777776665443332 123444666666 3221 11 11144445555555
Q ss_pred EEccCcceeeeCcc------------cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccc
Q 037371 160 LGSSKLEEMKIDST------------EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDK 227 (330)
Q Consensus 160 l~~~~~~~~~~~~~------------~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~ 227 (330)
++++.++....-.. ......+...+++|++|++++|.+..++.+..+++|++|+++++.+.++ +
T Consensus 206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~--- 281 (347)
T 4fmz_A 206 AYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-S--- 281 (347)
T ss_dssp CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-G---
T ss_pred cccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-h---
Confidence 54443332211000 0000001234455555555555444444455555555555555555444 1
Q ss_pred cccccccccCccccCcccceeeccccccccccc-CCCCCCCCccEEEEccCCCCCCC
Q 037371 228 LSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-PNPLPFPKLKKIQVFHCRQLKKL 283 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~c~~L~~l 283 (330)
.+..+++|+.|++++| .+.... .....+++|+.|++++|+ ++.+
T Consensus 282 ----------~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 282 ----------VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp ----------GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred ----------hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 3445566666666665 232222 112335666666666653 4443
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=3.4e-21 Score=179.57 Aligned_cols=241 Identities=16% Similarity=0.169 Sum_probs=156.0
Q ss_pred hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 8 SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
..|+++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|. .++.++++|++|++++|.+
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l----------- 141 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI----------- 141 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC-----------
T ss_pred ccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc-----------
Confidence 4577788888888888877744 66777777788888877766443332 2366777777777777766
Q ss_pred ccCCchhhHHH-hccCcCcceeeEEEechhhHHH--hhcc------------------------------ccccCceEEE
Q 037371 86 LCDDAEPLMKE-LLGLKHLNVLSWSFRSSLAVQK--FLKY------------------------------PKLVSITQSV 132 (330)
Q Consensus 86 ~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~--~~~~------------------------------~~~~~~L~~L 132 (330)
....+.. +.++++|++|++++|.+..... +... ......|++|
T Consensus 142 ----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 142 ----KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217 (455)
T ss_dssp ----CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred ----CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence 1122222 4555556666555554322100 0000 0001223333
Q ss_pred EE-EeCC------------------------------------------------------------CCCCCcccccccc
Q 037371 133 WV-ECGT------------------------------------------------------------YTRPPFNVLHLAY 151 (330)
Q Consensus 133 ~l-~~~~------------------------------------------------------------~~~~~~~~~~l~~ 151 (330)
++ ++.. +.........+..
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 297 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT
T ss_pred ecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc
Confidence 33 1100 0012222344667
Q ss_pred ccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccccccccccc
Q 037371 152 MENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLS 229 (330)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 229 (330)
+++|++|+++.|.++.+.+.. ...+++|++|++++|.+..+ ..+.++++|++|+|++|.+..+.+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 364 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNA--------FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD----- 364 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-----
T ss_pred CCCCCEEECCCCcccccChhH--------hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-----
Confidence 788888888877777654433 36789999999999977665 357899999999999999988866
Q ss_pred cccccccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccCCCCCCCC
Q 037371 230 DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCRQLKKLP 284 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~~L~~lp 284 (330)
..+..+++|++|+++++ .++.++... ..+++|+.|++.+++--...|
T Consensus 365 -------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 365 -------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 27788999999999998 677776654 458999999999975443343
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.3e-20 Score=168.54 Aligned_cols=206 Identities=16% Similarity=0.202 Sum_probs=91.8
Q ss_pred CCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 2 SLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
.+..+|. .|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. +. ++|++|++++|.+
T Consensus 63 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~--~~L~~L~l~~n~l----- 133 (330)
T 1xku_A 63 KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEK-MP--KTLQELRVHENEI----- 133 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSS-CC--TTCCEEECCSSCC-----
T ss_pred cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChh-hc--ccccEEECCCCcc-----
Confidence 3444443 355555555555555555533 44455555555555555544 344433 21 4555555555554
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.......+.++++|+.|++++|..............+.+|++|++ ++.- .... ..+ .++|++|
T Consensus 134 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l---~~l~-~~~--~~~L~~L 197 (330)
T 1xku_A 134 ----------TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIP-QGL--PPSLTEL 197 (330)
T ss_dssp ----------CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC---CSCC-SSC--CTTCSEE
T ss_pred ----------cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc---ccCC-ccc--cccCCEE
Confidence 223334455555555555555443221111111222344555554 2211 1110 001 1455555
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG 236 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 236 (330)
++++|.++.+.+..+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+..++.
T Consensus 198 ~l~~n~l~~~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~------------ 257 (330)
T 1xku_A 198 HLDGNKITKVDAASL--------KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG------------ 257 (330)
T ss_dssp ECTTSCCCEECTGGG--------TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT------------
T ss_pred ECCCCcCCccCHHHh--------cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh------------
Confidence 555444444322222 34455555555555443322 34455555555555555544432
Q ss_pred CccccCcccceeecccc
Q 037371 237 SEHNIFARLEYLTMWRG 253 (330)
Q Consensus 237 ~~~~~~~~L~~L~l~~~ 253 (330)
.+..+++|++|+++++
T Consensus 258 -~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 258 -GLADHKYIQVVYLHNN 273 (330)
T ss_dssp -TTTTCSSCCEEECCSS
T ss_pred -hhccCCCcCEEECCCC
Confidence 3444555555555554
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=6e-20 Score=171.91 Aligned_cols=248 Identities=17% Similarity=0.265 Sum_probs=140.1
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
++..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+ ..++. ++++++|++|++++|.+ +.
T Consensus 57 ~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~L~~n~l-~~---- 126 (466)
T 1o6v_A 57 GIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP--LANLTNLTGLTLFNNQI-TD---- 126 (466)
T ss_dssp CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC-CC----
T ss_pred CCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh--hcCCCCCCEEECCCCCC-CC----
Confidence 466777 48889999999999999998876 88999999999999977 45555 88999999999999887 21
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (330)
. ..+.++++|++|++++|.+..+..+ ..+.+|+.|.++... . ....+..+++|+.|+++
T Consensus 127 ----------~--~~~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~~~---~--~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 127 ----------I--DPLKNLTNLNRLELSSNTISDISAL----SGLTSLQQLSFGNQV---T--DLKPLANLTTLERLDIS 185 (466)
T ss_dssp ----------C--GGGTTCTTCSEEEEEEEEECCCGGG----TTCTTCSEEEEEESC---C--CCGGGTTCTTCCEEECC
T ss_pred ----------C--hHHcCCCCCCEEECCCCccCCChhh----ccCCcccEeecCCcc---c--CchhhccCCCCCEEECc
Confidence 1 1278899999999998876654432 223445555552111 1 11124444444444444
Q ss_pred ccCcceeee------------CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccc
Q 037371 162 SSKLEEMKI------------DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLS 229 (330)
Q Consensus 162 ~~~~~~~~~------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 229 (330)
++.++.+.. .........+...+++|++|++++|.+..++.+..+++|+.|+++++.+..+.+-....
T Consensus 186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~ 265 (466)
T 1o6v_A 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265 (466)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC
Confidence 333332210 00000011112345566666666665555555556666666666665555442200000
Q ss_pred cc-----ccccc---CccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCC
Q 037371 230 DI-----SEIIG---SEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKL 283 (330)
Q Consensus 230 ~~-----~~~~~---~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l 283 (330)
.+ .++.. ..+..+++|+.|+++++ .+..+.. ...+++|+.|++++| ++..+
T Consensus 266 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~ 324 (466)
T 1o6v_A 266 KLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDI 324 (466)
T ss_dssp TCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCC
T ss_pred CCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCc
Confidence 00 00000 01334555666666555 3333322 234666777777665 34433
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-20 Score=172.28 Aligned_cols=233 Identities=16% Similarity=0.168 Sum_probs=165.8
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|+.+++|++|++++|.+..+|. .+..+++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus 79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l---- 153 (390)
T 3o6n_A 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL---- 153 (390)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC----
T ss_pred CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHhcCCCCCcEEECCCCcc----
Confidence 34566664 68888889999999888886654 578888899999988876 567766568888888998888877
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH--Hhhccc------------cc-------------------
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--KFLKYP------------KL------------------- 125 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~------------~~------------------- 125 (330)
....+..+..+++|++|++++|.+.... .+.... ..
T Consensus 154 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 154 -----------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp -----------CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC
T ss_pred -----------CccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccc
Confidence 3234455777788888888777654321 100000 00
Q ss_pred --cCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-
Q 037371 126 --VSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT- 201 (330)
Q Consensus 126 --~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~- 201 (330)
...|+.|++ ++.. .. ...+..+++|++|++++|.++...+..+ ..+++|++|++++|.+..++
T Consensus 223 ~~~~~L~~L~l~~n~l---~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 223 PVNVELTILKLQHNNL---TD--TAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp CCCSSCCEEECCSSCC---CC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECCSSCCCEEEC
T ss_pred cccccccEEECCCCCC---cc--cHHHcCCCCccEEECCCCcCCCcChhHc--------cccccCCEEECCCCcCcccCc
Confidence 112444444 2111 11 2457788889999999888876654443 67889999999999776655
Q ss_pred cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
....+++|++|++++|.+..++. .+..+++|++|+++++ .+..++ ...+++|+.|++.+++
T Consensus 290 ~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ccCCCCCCCEEECCCCcceecCc-------------cccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCC
Confidence 35678999999999998887755 5677899999999998 566654 5568999999999864
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=5.7e-21 Score=189.36 Aligned_cols=248 Identities=17% Similarity=0.081 Sum_probs=186.0
Q ss_pred cCChhhhccccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG 83 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (330)
.+|..++++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l--------- 478 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDL--------- 478 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCC---------
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcc---------
Confidence 57788888999999999998887 77888888999999999998887788876 88899999999999888
Q ss_pred ccccCCchhhHHHhccCcCcceeeEEEechhh-HHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEE
Q 037371 84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA-VQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELG 161 (330)
Q Consensus 84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (330)
.+..+..+.++++|+.|++++|.... ++. ....+.+|++|++ ++.. .+.....+..+++|+.|+++
T Consensus 479 ------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 479 ------TGEIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSF---SGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp ------CSCCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCC---EEECCGGGGGCTTCCEEECC
T ss_pred ------cCcCCHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCCCEEECC
Confidence 44567778889999999999887652 222 2233566888888 4432 44556678899999999998
Q ss_pred ccCcceeeeC-cccc-------------------------------------------------------------cCcc
Q 037371 162 SSKLEEMKID-STEE-------------------------------------------------------------VKKL 179 (330)
Q Consensus 162 ~~~~~~~~~~-~~~~-------------------------------------------------------------~~~~ 179 (330)
.|.+....+. .... ..+.
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 6665422111 1000 0011
Q ss_pred CCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccc
Q 037371 180 FRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVK 257 (330)
Q Consensus 180 ~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 257 (330)
....+++|++|++++|.+.. +..++++++|+.|+|++|.+.+..+ ..++.+++|+.|+++++.--.
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip------------~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP------------DEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC------------GGGGGCTTCCEEECCSSCCEE
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC------------hHHhCCCCCCEEECCCCcccC
Confidence 23456789999999996653 4468999999999999999886656 278889999999999995555
Q ss_pred cccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 258 SVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 258 ~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
.++.....+++|++|++++++--..+|..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 66666677999999999997554557754
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=4e-21 Score=190.96 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=167.4
Q ss_pred CCccCChhhhccccccEeecCCCCCcc------------------cChhhh--cCcccceeccCCCCCCCCCchhhhCCC
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITG------------------LPQELK--ALEKLRYLNLDHTRFLSIIPPQLISGF 61 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~------------------lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~~l 61 (330)
++..+|..|+++++|++|+|++|.+.. +|..++ ++++|++|++++|.+.+.+|.. ++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCC
Confidence 445599999999999999999999997 999887 9999999999999988999986 9999
Q ss_pred CCCcEEEeccCC-CCCccccccCccccCCch-hhHHHhccCc-------CcceeeEEEechhhHHHhhccccccCceEEE
Q 037371 62 SKLEVLRLLSRG-RWSVLEEEEGSVLCDDAE-PLMKELLGLK-------HLNVLSWSFRSSLAVQKFLKYPKLVSITQSV 132 (330)
Q Consensus 62 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 132 (330)
++|++|++++|. + .+ .++..+.+++ +|+.|++++|.+..++.. .....+.+|+.|
T Consensus 515 ~~L~~L~Ls~N~~l---------------sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~-~~l~~L~~L~~L 578 (876)
T 4ecn_A 515 PELQSLNIACNRGI---------------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS-ASLQKMVKLGLL 578 (876)
T ss_dssp SSCCEEECTTCTTS---------------CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH-HHHTTCTTCCEE
T ss_pred CCCCEEECcCCCCc---------------ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh-hhhhcCCCCCEE
Confidence 999999999998 6 44 5666666655 999999998876643320 022335568888
Q ss_pred EE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCC-ccEEEEecccccccC-ccccc--C
Q 037371 133 WV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRS-LNTVVLRSCRGKDLT-WLVFV--Q 207 (330)
Q Consensus 133 ~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~l~-~l~~l--~ 207 (330)
++ ++.. . ....+..+++|+.|+++.|.++.+... ...+++ |++|+|++|.+..++ .+..+ +
T Consensus 579 ~Ls~N~l---~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~---------l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 579 DCVHNKV---R--HLEAFGTNVKLTDLKLDYNQIEEIPED---------FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp ECTTSCC---C--BCCCCCTTSEESEEECCSSCCSCCCTT---------SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred ECCCCCc---c--cchhhcCCCcceEEECcCCccccchHH---------HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 87 3322 2 222677788888888887766633211 234555 666666666544443 23332 2
Q ss_pred CccEEEEecccccccccccc--c----------cccc-----ccccCccccCcccceeecccccccccccCCCCCC----
Q 037371 208 NLKQLNMQGFTMEEIISVDK--L----------SDIS-----EIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPF---- 266 (330)
Q Consensus 208 ~L~~L~L~~~~l~~~~~~~~--~----------~~~~-----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~---- 266 (330)
+|+.|++++|.+...++.-. . ..+. ..+......+++|+.|+++++ .+..++......
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhcccccc
Confidence 36666666555543322100 0 0000 000012335678888888877 555655544332
Q ss_pred ----CCccEEEEccCCCCCCCCCCCc
Q 037371 267 ----PKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 267 ----~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
++|+.|++++| ++..+|....
T Consensus 724 l~nl~~L~~L~Ls~N-~L~~lp~~l~ 748 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLTSLSDDFR 748 (876)
T ss_dssp CTTGGGCCEEECCSS-CCCCCCGGGS
T ss_pred ccccCCccEEECCCC-CCccchHHhh
Confidence 28888888886 7778876654
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=4.4e-21 Score=169.64 Aligned_cols=208 Identities=20% Similarity=0.251 Sum_probs=95.6
Q ss_pred CccCChhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCCCC--CchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSI--IPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~--~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+.++|..+. ++|++|++++|.+..+|.. +.++++|++|++++|.+... .+.. +..+++|++|++++|.+
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i----- 90 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV----- 90 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE-----
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc-----
Confidence 445554433 3555555555555555543 35555555555555544211 1232 34455555555555544
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
. ..+..+..+++|++|++++|.+..... ...+..+++|++|+
T Consensus 91 ----------~-~l~~~~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 91 ----------I-TMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------------FSVFLSLRNLIYLD 132 (306)
T ss_dssp ----------E-EEEEEEETCTTCCEEECTTSEEESSTT---------------------------TTTTTTCTTCCEEE
T ss_pred ----------c-cChhhcCCCCCCCEEECCCCccccccc---------------------------chhhhhccCCCEEE
Confidence 1 122234455555555555444322111 12344455555555
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc---cCcccccCCccEEEEeccccccccccccccccccccc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG 236 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 236 (330)
++++.++...+.. ...+++|++|++++|.+.. +..+..+++|++|+++++.+.++.+
T Consensus 133 l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------ 192 (306)
T 2z66_A 133 ISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------------ 192 (306)
T ss_dssp CTTSCCEECSTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------------
T ss_pred CCCCcCCccchhh--------cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH------------
Confidence 5544444332211 1344555555555553332 2234555555555555555554433
Q ss_pred CccccCcccceeecccccccccccCC-CCCCCCccEEEEccC
Q 037371 237 SEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHC 277 (330)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c 277 (330)
..+..+++|+.|+++++ .+..+... ...+++|+.|+++++
T Consensus 193 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 13444555555555554 23332221 222455555555554
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=1.3e-20 Score=165.06 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=113.5
Q ss_pred CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC-CCCccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG-RWSVLE 79 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~-~~~~~~ 79 (330)
++.++|..+. ++|++|++++|.+..+|. .+..+++|++|++++|.+.+..|.. +.++++|++|++++|. +
T Consensus 22 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l----- 93 (285)
T 1ozn_A 22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQL----- 93 (285)
T ss_dssp CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTC-----
T ss_pred CcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCc-----
Confidence 3555665442 466777777776665553 4666777777777766553332333 6667777777777665 4
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
....+..+..+++|++|++++|.+. ......+..+++|++|+
T Consensus 94 ----------~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 94 ----------RSVDPATFHGLGRLHTLHLDRCGLQ----------------------------ELGPGLFRGLAALQYLY 135 (285)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred ----------cccCHHHhcCCcCCCEEECCCCcCC----------------------------EECHhHhhCCcCCCEEE
Confidence 2222444556666666666655432 22223345556666666
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.|.++.+.... ...+++|++|++++|.+..++ .+..+++|+.|++++|.+.++.+ .
T Consensus 136 l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------~ 195 (285)
T 1ozn_A 136 LQDNALQALPDDT--------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP------------H 195 (285)
T ss_dssp CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------------T
T ss_pred CCCCcccccCHhH--------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH------------h
Confidence 6655555432221 234556666666666444433 25556666666666655555533 1
Q ss_pred ccccCcccceeecccccccccccCC-CCCCCCccEEEEccC
Q 037371 238 EHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHC 277 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c 277 (330)
.+..+++|+.|+++++ .+..++.. ...+++|+.|++.++
T Consensus 196 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 4455566666666655 33333322 223556666665554
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=7.4e-21 Score=183.62 Aligned_cols=249 Identities=16% Similarity=0.152 Sum_probs=125.8
Q ss_pred CCccCChh-hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
.+..+|.. |+++++|++|++++|.+..+|..+..+++|++|++++|.+.+..|.. ++++++|++|++++|.+
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~------ 337 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTK------ 337 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSS------
T ss_pred ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCc------
Confidence 34555543 77777777777777777777777777777777777777664333433 66777777777777665
Q ss_pred ccCccccCCchhh-HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 81 EEGSVLCDDAEPL-MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 81 ~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.... ...+..+++|++|++++|..............+.+|++|++ ++.. .......+..+++|+.|
T Consensus 338 ---------~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 338 ---------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP---LSLKTEAFKECPQLELL 405 (606)
T ss_dssp ---------CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC---EEECTTTTTTCTTCSEE
T ss_pred ---------ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC---CcCCHHHhcCCccCCeE
Confidence 1111 12355566666666665554332211112223344555555 2211 22223344455555555
Q ss_pred EEEccCcceeeeCc-ccc----------------cCccCCCCCCCccEEEEecccccc-----cCcccccCCccEEEEec
Q 037371 159 ELGSSKLEEMKIDS-TEE----------------VKKLFRNGFRSLNTVVLRSCRGKD-----LTWLVFVQNLKQLNMQG 216 (330)
Q Consensus 159 ~l~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~L~~L~L~~~~~~~-----l~~l~~l~~L~~L~L~~ 216 (330)
+++++.++...+.. +.. ........+++|++|++++|.+.. ...+..+++|++|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 55544433221110 000 000112344555555555553322 12344555555555555
Q ss_pred ccccccccccccccccccccCccccCcccceeeccccccccccc-CCCCCCCCccEEEEccCCCCCCCC
Q 037371 217 FTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-PNPLPFPKLKKIQVFHCRQLKKLP 284 (330)
Q Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~i~~c~~L~~lp 284 (330)
|.+.++.+ ..+..+++|+.|+++++ .+.... .....+++| .|++++| ++..+|
T Consensus 486 n~l~~~~~------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~ 539 (606)
T 3t6q_A 486 CDLSSIDQ------------HAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIIL 539 (606)
T ss_dssp SCCCEECT------------TTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCC
T ss_pred CccCccCh------------hhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccC
Confidence 55555433 14555666666666666 333322 223335566 6666664 444444
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.3e-20 Score=181.98 Aligned_cols=243 Identities=16% Similarity=0.192 Sum_probs=168.3
Q ss_pred CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+.++|..++++++|++|++++|.+..+ |..+..+++|++|++++|.+.+.+|...+.++++|++|++++|.+ ..
T Consensus 288 n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~-- 364 (606)
T 3t6q_A 288 THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-ET-- 364 (606)
T ss_dssp SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CE--
T ss_pred CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc-cc--
Confidence 56788999999999999999999999865 557899999999999999887777776688999999999999887 22
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHH--hh---------------------ccccccCceEEEEE-E
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQK--FL---------------------KYPKLVSITQSVWV-E 135 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~---------------------~~~~~~~~L~~L~l-~ 135 (330)
....+..+..+++|++|++++|....... +. .....+.+|++|++ +
T Consensus 365 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 365 ----------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ----------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred ----------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 11114456666677777666654332110 00 00112233444444 2
Q ss_pred eCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEE
Q 037371 136 CGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLN 213 (330)
Q Consensus 136 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~ 213 (330)
+. ........+..+++|++|++++|.++..... .......+++|++|++++|.+... ..++++++|+.|+
T Consensus 435 n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 435 SL---LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CC---CBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred Cc---cCCcCHHHHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 21 1222334456667777777776555432111 111246789999999999976664 3688999999999
Q ss_pred EecccccccccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCC
Q 037371 214 MQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCR 278 (330)
Q Consensus 214 L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~ 278 (330)
|++|.+..+.+. .+..+++| .|+++++ .+..+... ...+++|+.|++.+++
T Consensus 507 Ls~N~l~~~~~~------------~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 507 LSHNRLTSSSIE------------ALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCGGGGG------------GGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCCCccCcCChh------------HhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 999999888662 67788999 9999998 55554433 2347899999999875
No 25
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=5.9e-21 Score=169.81 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=170.3
Q ss_pred hhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 10 ISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
+..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+ .++ +..+++|++|++++|.+ +.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l-~~----------- 94 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYV-QE----------- 94 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEE-EE-----------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCcc-cc-----------
Confidence 456679999999999999776 578999999999999997743 444 88999999999999887 21
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCccee
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM 168 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 168 (330)
+...++|++|++++|.+..... ....+|+.|++.... ........+..+++|++|++++|.++.+
T Consensus 95 --------l~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 95 --------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp --------EEECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred --------ccCCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCCCCcc
Confidence 2244899999999887654321 224568888883222 3445555678899999999998888876
Q ss_pred eeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCccccee
Q 037371 169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYL 248 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 248 (330)
.+... ...+++|++|++++|.++.++....+++|++|++++|.+..+++ .+..+++|+.|
T Consensus 160 ~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------------~~~~l~~L~~L 219 (317)
T 3o53_A 160 NFAEL-------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-------------EFQSAAGVTWI 219 (317)
T ss_dssp EGGGG-------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-------------GGGGGTTCSEE
T ss_pred cHHHH-------hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh-------------hhcccCcccEE
Confidence 54433 23578899999999988777766679999999999999988865 56678999999
Q ss_pred ecccccccccccCCCCCCCCccEEEEccCCC
Q 037371 249 TMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQ 279 (330)
Q Consensus 249 ~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~ 279 (330)
+++++ .++.++.....+++|+.|++.+++-
T Consensus 220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ECTTS-CCCEECTTCCCCTTCCEEECTTCCC
T ss_pred ECcCC-cccchhhHhhcCCCCCEEEccCCCc
Confidence 99998 7777777766789999999998643
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.7e-20 Score=167.42 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=162.5
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+| .+.++++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+ ..
T Consensus 98 n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~-~~--- 169 (347)
T 4fmz_A 98 NKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV-KD--- 169 (347)
T ss_dssp SCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCC-CC---
T ss_pred CcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCc-CC---
Confidence 3456665 68899999999999999888876 88899999999998876666555 78888888888888877 21
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc------------------ccccCceEEEEE-EeCCCCC
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY------------------PKLVSITQSVWV-ECGTYTR 141 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------~~~~~~L~~L~l-~~~~~~~ 141 (330)
.. .+..+++|+.|++++|....+..+... ...+.+|++|++ ++..
T Consensus 170 -----------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l--- 233 (347)
T 4fmz_A 170 -----------VT--PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI--- 233 (347)
T ss_dssp -----------CG--GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC---
T ss_pred -----------ch--hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc---
Confidence 11 155666666666666554333221110 122344555655 3222
Q ss_pred CCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccc
Q 037371 142 PPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEE 221 (330)
Q Consensus 142 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~ 221 (330)
... ..+..+++|+.|+++++.++.+ .....+++|++|++++|.+..++.+..+++|+.|++++|.+.+
T Consensus 234 ~~~--~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 234 TDL--SPLANLSQLTWLEIGTNQISDI----------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCC----------GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCG
T ss_pred CCC--cchhcCCCCCEEECCCCccCCC----------hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCC
Confidence 111 1266677777777776665543 1246789999999999988888889999999999999999887
Q ss_pred cccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
..+. .+..+++|++|++++|. +..+.. ...+++|+.|++++|+
T Consensus 302 ~~~~------------~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 302 EDME------------VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGHH------------HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cChh------------HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 7652 67789999999999994 665544 4569999999999974
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.1e-20 Score=185.85 Aligned_cols=258 Identities=13% Similarity=0.106 Sum_probs=150.1
Q ss_pred CChhhhccc-------cccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371 6 LPSGISNLV-------SLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWS 76 (330)
Q Consensus 6 lp~~l~~l~-------~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 76 (330)
+|..+++++ +|++|++++|.+..+|. .++++++|+.|++++|.+. .+| . ++.+++|++|++++|.+
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l-- 607 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQI-- 607 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCC--
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCcc--
Confidence 555555554 66666666666666665 5666666666666666553 555 2 66666666666666555
Q ss_pred ccccccCccccCCchhhHHHhccCcC-cceeeEEEechhhHHHhhcc--------------------------cc--ccC
Q 037371 77 VLEEEEGSVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFLKY--------------------------PK--LVS 127 (330)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~--------------------------~~--~~~ 127 (330)
. .++..+..+++ |+.|++++|.+..++..... .. ...
T Consensus 608 -------------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 608 -------------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp -------------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred -------------c-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 2 23334555555 55555555543322211100 00 012
Q ss_pred ceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-ccc--
Q 037371 128 ITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLV-- 204 (330)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~-- 204 (330)
+|+.|++..+. ........+..+++|+.|++++|.++.+....... .......+++|++|+|++|.+..++ .+.
T Consensus 674 ~L~~L~Ls~N~--L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~-~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSYNE--IQKFPTELFATGSPISTIILSNNLMTSIPENSLKP-KDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CEEEEECCSSC--CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC-TTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CcCEEEccCCc--CCccCHHHHccCCCCCEEECCCCcCCccChHHhcc-ccccccccCCccEEECCCCCCccchHHhhhc
Confidence 35555551111 12222222346677778887776766443322200 0000122348999999999776665 454
Q ss_pred ccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc------ccccccCCCCCCCCccEEEEccCC
Q 037371 205 FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT------NVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 205 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
.+++|+.|+|++|.+..++. .+..+++|+.|+++++. -...++.....+++|+.|++++|
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~-------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N- 816 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPT-------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN- 816 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCC-------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred cCCCcCEEEeCCCCCCccch-------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-
Confidence 79999999999998888643 66789999999998743 23445555566899999999997
Q ss_pred CCCCCCCCCcCCCCCceEEecc
Q 037371 279 QLKKLPLNSSSAKGRRVVIEGT 300 (330)
Q Consensus 279 ~L~~lp~~~~~~~~~~~~i~~~ 300 (330)
.+..+|..... .++...+..+
T Consensus 817 ~L~~Ip~~l~~-~L~~LdLs~N 837 (876)
T 4ecn_A 817 DIRKVDEKLTP-QLYILDIADN 837 (876)
T ss_dssp CCCBCCSCCCS-SSCEEECCSC
T ss_pred CCCccCHhhcC-CCCEEECCCC
Confidence 55889887552 3334444443
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=8.5e-21 Score=169.84 Aligned_cols=230 Identities=18% Similarity=0.209 Sum_probs=166.5
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. +. ++|++|++++|.+
T Consensus 64 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~-~~--~~L~~L~l~~n~i---- 135 (332)
T 2ft3_A 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPN-LP--SSLVELRIHDNRI---- 135 (332)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSS-CC--TTCCEEECCSSCC----
T ss_pred CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcc-cc--ccCCEEECCCCcc----
Confidence 45677754 799999999999999999966 66889999999999999977 577775 33 8999999999988
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQE 157 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~ 157 (330)
.......+..+++|+.|++++|............... .|+.|++ +..- .... ..+ .++|++
T Consensus 136 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l---~~l~-~~~--~~~L~~ 197 (332)
T 2ft3_A 136 -----------RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL---TGIP-KDL--PETLNE 197 (332)
T ss_dssp -----------CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC---SSCC-SSS--CSSCSC
T ss_pred -----------CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC---CccC-ccc--cCCCCE
Confidence 3234455788999999999998765322222222222 5666666 3222 2211 111 268888
Q ss_pred EEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccc
Q 037371 158 LELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEII 235 (330)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 235 (330)
|+++.|.++.+.+.. ...+++|++|++++|.+..++ ++..+++|+.|++++|.+..++.
T Consensus 198 L~l~~n~i~~~~~~~--------l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~----------- 258 (332)
T 2ft3_A 198 LHLDHNKIQAIELED--------LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA----------- 258 (332)
T ss_dssp CBCCSSCCCCCCTTS--------STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-----------
T ss_pred EECCCCcCCccCHHH--------hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-----------
Confidence 888887777654333 356788999999988666654 57888999999999888887754
Q ss_pred cCccccCcccceeecccccccccccCCCC-------CCCCccEEEEccCC
Q 037371 236 GSEHNIFARLEYLTMWRGTNVKSVYPNPL-------PFPKLKKIQVFHCR 278 (330)
Q Consensus 236 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~c~ 278 (330)
.+..+++|++|+++++ .++.++.... .+++|+.|.+.+++
T Consensus 259 --~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 259 --GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp --TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred --hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 5677888999999887 5666554322 15678889888875
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=5.6e-21 Score=169.68 Aligned_cols=231 Identities=13% Similarity=0.138 Sum_probs=180.0
Q ss_pred ccccEeecCCCCCc---ccChhhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 14 VSLHHLDLSRTNIT---GLPQELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 14 ~~L~~L~L~~~~~~---~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
.++++|+++++.+. .+|..+.++++|++|++++ |.+.+.+|.. ++++++|++|++++|.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l--------------- 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNV--------------- 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECC---------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCee---------------
Confidence 57999999999988 5899999999999999995 8787888887 99999999999999998
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccccc-CccEEEEEccCccee
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYME-NLQELELGSSKLEEM 168 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 168 (330)
....+..+.++++|++|++++|.+... +......+.+|++|++..+. ........+..++ +|+.|+++.|.++..
T Consensus 114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CCcCCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 446777899999999999999876521 11222346678999983222 2434556788887 999999998887755
Q ss_pred eeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371 169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE 246 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 246 (330)
.+..+ ..+. |++|++++|.+.. ...+..+++|+.|++++|.+....+ .+..+++|+
T Consensus 190 ~~~~~--------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~l~~L~ 247 (313)
T 1ogq_A 190 IPPTF--------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-------------KVGLSKNLN 247 (313)
T ss_dssp CCGGG--------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-------------GCCCCTTCC
T ss_pred CChHH--------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-------------cccccCCCC
Confidence 44333 3444 9999999996654 3467899999999999998876655 566789999
Q ss_pred eeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 247 YLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 247 ~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
+|+++++.-...++.....+++|+.|+++++.--..+|..
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999998433355555666999999999997443366665
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.6e-20 Score=168.06 Aligned_cols=239 Identities=18% Similarity=0.155 Sum_probs=182.2
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. ++|++|++++|.+..++ ..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.
T Consensus 43 ~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l-~~-- 116 (332)
T 2ft3_A 43 LGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHL-VE-- 116 (332)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCC-CS--
T ss_pred CCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcC-Cc--
Confidence 45778998775 69999999999999775 47899999999999999885544654 99999999999999988 22
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
++..+. ++|++|++++|.+..+.. .....+.+|+.|++..............+..+ +|+.|+
T Consensus 117 -------------l~~~~~--~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 117 -------------IPPNLP--SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp -------------CCSSCC--TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred -------------cCcccc--ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 222222 789999999987654321 12234667899998322210112334456666 999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.+.++.+.. .-+++|++|++++|.+..++ .+..+++|+.|++++|.+..+.+ .
T Consensus 179 l~~n~l~~l~~-----------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~------------~ 235 (332)
T 2ft3_A 179 ISEAKLTGIPK-----------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN------------G 235 (332)
T ss_dssp CCSSBCSSCCS-----------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT------------T
T ss_pred CcCCCCCccCc-----------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh------------h
Confidence 99888775432 22378999999999776654 68899999999999999988865 2
Q ss_pred ccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCc
Q 037371 238 EHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSS 288 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~ 288 (330)
.+..+++|+.|+++++ .+..++.....+++|+.|+++++ .++.+|....
T Consensus 236 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~ 284 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDF 284 (332)
T ss_dssp GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHc
Confidence 6778999999999998 77788777777999999999995 7888876544
No 31
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.2e-21 Score=192.38 Aligned_cols=250 Identities=17% Similarity=0.094 Sum_probs=114.4
Q ss_pred cCChhhhcc-ccccEeecCCCCCc-ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 5 KLPSGISNL-VSLHHLDLSRTNIT-GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 5 ~lp~~l~~l-~~L~~L~L~~~~~~-~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
.+|..+... ++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+|..++.++++|++|++++|.+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-------- 355 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-------- 355 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE--------
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc--------
Confidence 455554443 66666666666655 55556666666666666666554455554456666666666666555
Q ss_pred CccccCCchhhHHHhccCc-CcceeeEEEechhhH--HHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 83 GSVLCDDAEPLMKELLGLK-HLNVLSWSFRSSLAV--QKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.+..+..+.+++ +|+.|++++|..... ..+. ......|++|++ ++.. .......+..+++|+.|
T Consensus 356 -------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~--~~~~~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 356 -------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLC--QNPKNTLQELYLQNNGF---TGKIPPTLSNCSELVSL 423 (768)
T ss_dssp -------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT--CSTTCCCCEEECCSSEE---EEECCGGGGGCTTCCEE
T ss_pred -------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhh--hcccCCccEEECCCCcc---ccccCHHHhcCCCCCEE
Confidence 223333444443 555555554433210 0000 001233555555 2211 22233345555666666
Q ss_pred EEEccCcceeeeCcccc----------------cCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccc
Q 037371 159 ELGSSKLEEMKIDSTEE----------------VKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTME 220 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~ 220 (330)
+++.|.++...+..... ..+.....+++|++|++++|.+.. +.++.++++|++|+|++|.+.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 66644444322221100 000011233444444444443321 123444444444444444444
Q ss_pred ccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 221 EIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
+..+ ..++.+++|++|+++++.-...++.....+++|+.|++++|+-...+|..
T Consensus 504 ~~~p------------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 504 GEIP------------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp SCCC------------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred CcCC------------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 3322 13444555555555555333334433444555555555555433344443
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=1.5e-20 Score=182.55 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=141.7
Q ss_pred CChhhhcc------ccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCc
Q 037371 6 LPSGISNL------VSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSV 77 (330)
Q Consensus 6 lp~~l~~l------~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 77 (330)
+|..++++ ++|++|++++|.+..+|. .++.+++|++|++++|.+.+.+| . ++.+++|++|++++|.+
T Consensus 291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l--- 365 (636)
T 4eco_A 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQI--- 365 (636)
T ss_dssp HHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEE---
T ss_pred chHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCcc---
Confidence 55555554 666666666666666665 56666666666666665544555 2 55566666666666554
Q ss_pred cccccCccccCCchhhHHHhccCcC-cceeeEEEechhhHHHhhc-----------------------ccc-------cc
Q 037371 78 LEEEEGSVLCDDAEPLMKELLGLKH-LNVLSWSFRSSLAVQKFLK-----------------------YPK-------LV 126 (330)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~-----------------------~~~-------~~ 126 (330)
. .++..+..+++ |++|++++|.+..++.... ... ..
T Consensus 366 ------------~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 366 ------------T-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ------------E-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred ------------c-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 2 23334455555 5555555554332221100 000 12
Q ss_pred CceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-ccc-
Q 037371 127 SITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLV- 204 (330)
Q Consensus 127 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~- 204 (330)
.+|+.|++.-.. ........+..+++|++|++++|.++.+....... .......+++|++|++++|.+..++ .+.
T Consensus 433 ~~L~~L~Ls~N~--l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 433 INVSSINLSNNQ--ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCEEEEECCSSC--CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE-TTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCEEECcCCc--cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc-ccccccccCCccEEECcCCcCCccChhhhh
Confidence 235555551111 12222222445667777777766666443322200 0000112238888999888666655 344
Q ss_pred -ccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc------ccccccCCCCCCCCccEEEEccC
Q 037371 205 -FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT------NVKSVYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 205 -~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~l~~~~~~~~~L~~L~i~~c 277 (330)
.+++|+.|+|++|.+..++. .+..+++|+.|+++++. -...++.....+++|++|++++|
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~-------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPT-------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCC-------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ccCCCcCEEECCCCCCCCcCh-------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 78899999999888887643 66678999999996532 23445555566899999999996
Q ss_pred CCCCCCCCCCc
Q 037371 278 RQLKKLPLNSS 288 (330)
Q Consensus 278 ~~L~~lp~~~~ 288 (330)
+++.+|....
T Consensus 577 -~l~~ip~~~~ 586 (636)
T 4eco_A 577 -DIRKVNEKIT 586 (636)
T ss_dssp -CCCBCCSCCC
T ss_pred -cCCccCHhHh
Confidence 5588887654
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=1.9e-20 Score=180.69 Aligned_cols=236 Identities=17% Similarity=0.120 Sum_probs=148.8
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
.+..+++|++|++++|.+..+| .+ .+++|++|++++|...+.. . +..+++|++|++++|.+ +.
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~ls~n~l-~~----------- 364 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-KVALPSLSYLDLSRNAL-SF----------- 364 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-CCCCTTCCEEECCSSCE-EE-----------
T ss_pred hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h-hccCCCCCEEECcCCcc-CC-----------
Confidence 3444444444444444444444 22 4444444444444332222 1 44555555555555554 11
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccc-cccccccCccEEEEEccCcc
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNV-LHLAYMENLQELELGSSKLE 166 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 166 (330)
....+..+..+++|+.|++++|....+. .....+.+|+.|++ ++.. ..... ..+..+++|+.|+++++.++
T Consensus 365 -~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 365 -SGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTL---KRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp -EEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEE---ESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred -CcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCcc---CCccChhhhhccccCCEEECcCCCCC
Confidence 1113566677777777777776644322 23334566777777 3322 22222 45778888888888877766
Q ss_pred eeeeCcccccCccCCCCCCCccEEEEecccccc---cCcccccCCccEEEEecccccccccccccccccccccCccccCc
Q 037371 167 EMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD---LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFA 243 (330)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~---l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (330)
...+.. ...+++|++|++++|.+.. +..++.+++|+.|++++|.+.++.+ ..+..++
T Consensus 438 ~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~ 497 (606)
T 3vq2_A 438 IDFDGI--------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW------------GVFDTLH 497 (606)
T ss_dssp ECCTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------------TTTTTCT
T ss_pred ccchhh--------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh------------hhhcccc
Confidence 543333 3678899999999996654 3467889999999999998888766 2678899
Q ss_pred ccceeecccccccccc-cCCCCCCCCccEEEEccCCCCCCCCCCCcCC
Q 037371 244 RLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQLKKLPLNSSSA 290 (330)
Q Consensus 244 ~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~ 290 (330)
+|+.|+++++ .+..+ +.....+++|++|++++| +++.+|......
T Consensus 498 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l 543 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHF 543 (606)
T ss_dssp TCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGS
T ss_pred cCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhh
Confidence 9999999999 55554 444566899999999997 588888775444
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=4.4e-20 Score=177.99 Aligned_cols=233 Identities=16% Similarity=0.168 Sum_probs=165.6
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|+.+++|++|+|++|.+..+|. .++.+++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus 85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l---- 159 (597)
T 3oja_B 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNL---- 159 (597)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC----
T ss_pred CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHHHhccCCCCCEEEeeCCcC----
Confidence 34566664 68888888888888888886655 467888888888888866 466665568888888888888877
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH--Hhhcc------------cc--------------------
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--KFLKY------------PK-------------------- 124 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~------------~~-------------------- 124 (330)
....+..+..+++|++|++++|.+.... .+... ..
T Consensus 160 -----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~ 228 (597)
T 3oja_B 160 -----------ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228 (597)
T ss_dssp -----------CBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred -----------CCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence 3344555677777777777777654321 00000 00
Q ss_pred -ccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-
Q 037371 125 -LVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT- 201 (330)
Q Consensus 125 -~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~- 201 (330)
....|+.|++ ++.. .. ...+..+++|+.|++++|.++...+..+ ..+++|++|+|++|.+..++
T Consensus 229 ~~~~~L~~L~L~~n~l---~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 229 PVNVELTILKLQHNNL---TD--TAWLLNYPGLVEVDLSYNELEKIMYHPF--------VKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp SCCSCCCEEECCSSCC---CC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------TTCSSCCEEECTTSCCCEEEC
T ss_pred ccCCCCCEEECCCCCC---CC--ChhhccCCCCCEEECCCCccCCCCHHHh--------cCccCCCEEECCCCCCCCCCc
Confidence 0112444444 2111 11 2457788999999999888887655443 67899999999999777655
Q ss_pred cccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
.+..+++|+.|+|++|.+..++. .+..+++|++|+++++ .+..++ ...+++|+.|++++++
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~~i~~-------------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLLHVER-------------NQPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SSSCCTTCCEEECCSSCCCCCGG-------------GHHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred ccccCCCCcEEECCCCCCCccCc-------------ccccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 35669999999999999887755 5678999999999998 465543 5568999999999865
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.5e-20 Score=175.32 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=177.8
Q ss_pred cCChhhhccc----cccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 5 KLPSGISNLV----SLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 5 ~lp~~l~~l~----~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
.+|..+..+. +|++|+|++|.+..++ ..+..+++|++|++++|.+.+. ++ ++.+++|++|++++|.+ +.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l-~~-- 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYV-QE-- 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEE-EE--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcC-CC--
Confidence 4566555554 8999999999999765 5889999999999999987443 44 88999999999999887 21
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
+...++|+.|++++|.+..... ....+|+.|++..+. ........+..+++|+.|+
T Consensus 95 -----------------l~~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 95 -----------------LLVGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp -----------------EEECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEE
T ss_pred -----------------CCCCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEE
Confidence 2234899999999987654322 224668888883322 3555556788999999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCcc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH 239 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (330)
+++|.++...+..+ ...+++|++|+|++|.+..++....+++|+.|+|++|.+..+++ .+
T Consensus 151 Ls~N~l~~~~~~~l-------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~ 210 (487)
T 3oja_A 151 LKLNEIDTVNFAEL-------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP-------------EF 210 (487)
T ss_dssp CTTSCCCEEEGGGG-------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG-------------GG
T ss_pred CCCCCCCCcChHHH-------hhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH-------------hH
Confidence 99888887655443 13578999999999988877777789999999999999998866 57
Q ss_pred ccCcccceeecccccccccccCCCCCCCCccEEEEccCCCC
Q 037371 240 NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQL 280 (330)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L 280 (330)
..+++|+.|+++++ .+..++.....+++|+.|++.+++-.
T Consensus 211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 78899999999998 67777777777899999999987543
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=171.78 Aligned_cols=94 Identities=28% Similarity=0.276 Sum_probs=61.4
Q ss_pred CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+| ..|+++++|++|++++|.+..+ |..+..+++|++|++++|.+ ..+|.. .+++|++|++++|.+
T Consensus 31 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~---~l~~L~~L~L~~N~l---- 102 (520)
T 2z7x_B 31 NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKISCH---PTVNLKHLDLSFNAF---- 102 (520)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC-CEEECC---CCCCCSEEECCSSCC----
T ss_pred CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce-eecCcc---ccCCccEEeccCCcc----
Confidence 3455666 3577777777777777777755 55677777777777777766 456652 677777777777766
Q ss_pred ccccCccccCCch-hhHHHhccCcCcceeeEEEech
Q 037371 79 EEEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
.. ..+..++++++|++|++++|.+
T Consensus 103 -----------~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 103 -----------DALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp -----------SSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred -----------ccccchhhhccCCcceEEEecCccc
Confidence 21 2345566666666666666554
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=1.1e-19 Score=173.38 Aligned_cols=72 Identities=25% Similarity=0.420 Sum_probs=50.4
Q ss_pred CCCccCC-hhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCCC-CCchhhhCCCCCCcEEEeccCC
Q 037371 1 LSLSKLP-SGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLS-IIPPQLISGFSKLEVLRLLSRG 73 (330)
Q Consensus 1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~ 73 (330)
|.+..+| ..|+++++|++|++++|.+..+|.. ++.+++|++|++++|.+.+ ..|.. ++++++|++|++++|.
T Consensus 60 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESS
T ss_pred CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCc
Confidence 3455555 4578888888888888887766654 7778888888888876643 23443 6777777777777776
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.81 E-value=1.3e-19 Score=168.94 Aligned_cols=186 Identities=18% Similarity=0.193 Sum_probs=96.3
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
.+..+| .++.+++|++|++++|.++.+| ++.+++|++|++++|.+.+ ++ ++++++|++|++++|.+
T Consensus 53 ~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l------- 118 (457)
T 3bz5_A 53 SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKL------- 118 (457)
T ss_dssp CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCC-------
T ss_pred CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcC-------
Confidence 344444 4555556666666665555554 5555566666665555422 22 45566666666666555
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEE
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
.. . .++.+++|++|++++|.+..+. ...+..|++|++ ++.. ... ..+..+++|+.|++
T Consensus 119 --------~~-l--~~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~--~~~---~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 119 --------TK-L--DVSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKK--ITK---LDVTPQTQLTTLDC 177 (457)
T ss_dssp --------SC-C--CCTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSC--CCC---CCCTTCTTCCEEEC
T ss_pred --------Ce-e--cCCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCc--ccc---cccccCCcCCEEEC
Confidence 11 1 1555666666666655544321 122344555555 3211 011 13445556666666
Q ss_pred EccCcceeeeCcccc----------cCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371 161 GSSKLEEMKIDSTEE----------VKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 223 (330)
+.|.++.+....... -...+...+++|++|++++|.+..++ ++.+++|+.|++++|.+.+++
T Consensus 178 s~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 178 SFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcC
Confidence 655554432110000 00112345677777777777666655 667777777777777776654
No 39
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=2.1e-19 Score=153.16 Aligned_cols=206 Identities=14% Similarity=0.141 Sum_probs=133.5
Q ss_pred CccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc-CCCCCcccc
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS-RGRWSVLEE 80 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~-~~~~~~~~~ 80 (330)
+.++|. +. .+|++|++++|+++.+|. .+..+++|++|++++|...+.++..++.++++|++|++++ |.+
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l------ 93 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL------ 93 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC------
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe------
Confidence 566776 44 378888888888887766 6778888888888888633666654578888888888887 777
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCcc---E
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQ---E 157 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~---~ 157 (330)
....+..+..+++|+.|++++|.+..++ .+..+++|+ .
T Consensus 94 ---------~~i~~~~f~~l~~L~~L~l~~n~l~~lp------------------------------~~~~l~~L~~L~~ 134 (239)
T 2xwt_C 94 ---------TYIDPDALKELPLLKFLGIFNTGLKMFP------------------------------DLTKVYSTDIFFI 134 (239)
T ss_dssp ---------CEECTTSEECCTTCCEEEEEEECCCSCC------------------------------CCTTCCBCCSEEE
T ss_pred ---------eEcCHHHhCCCCCCCEEeCCCCCCcccc------------------------------ccccccccccccE
Confidence 2233445677788888888877533211 133444444 7
Q ss_pred EEEEcc-CcceeeeCcccccCccCCCCCCCcc-EEEEecccccccCc--ccccCCccEEEEecc-ccccccccccccccc
Q 037371 158 LELGSS-KLEEMKIDSTEEVKKLFRNGFRSLN-TVVLRSCRGKDLTW--LVFVQNLKQLNMQGF-TMEEIISVDKLSDIS 232 (330)
Q Consensus 158 L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~-~l~~~~~~~~~~~~~ 232 (330)
|+++.| .++.+....+ ..+++|+ +|++++|.+..++. +.. ++|+.|++++| .++.+++
T Consensus 135 L~l~~N~~l~~i~~~~~--------~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-------- 197 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAF--------QGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-------- 197 (239)
T ss_dssp EEEESCTTCCEECTTTT--------TTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT--------
T ss_pred EECCCCcchhhcCcccc--------cchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH--------
Confidence 777765 6665543332 4567777 77777775555442 333 67777777776 3776654
Q ss_pred ccccCccccC-cccceeecccccccccccCCCCCCCCccEEEEccCCCC
Q 037371 233 EIIGSEHNIF-ARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQL 280 (330)
Q Consensus 233 ~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L 280 (330)
..+..+ ++|+.|+++++ .++.++.. .|++|+.|.+.+++.|
T Consensus 198 ----~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 198 ----DAFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp ----TTTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred ----HHhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence 145566 77777777775 55554433 5777777777776543
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=3.9e-19 Score=170.16 Aligned_cols=96 Identities=30% Similarity=0.298 Sum_probs=67.1
Q ss_pred CCCccCC-hhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLP-SGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+| ..|+++++|++|++++|.++.+ |..+..+++|++|++++|.+ ..+|.. .+++|++|++++|.+ +.
T Consensus 62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~---~l~~L~~L~Ls~N~l-~~- 135 (562)
T 3a79_B 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCC---PMASLRHLDLSFNDF-DV- 135 (562)
T ss_dssp SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-CEECSC---CCTTCSEEECCSSCC-SB-
T ss_pred CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-CccCcc---ccccCCEEECCCCCc-cc-
Confidence 4566676 4688888888888888888865 55678888888888888866 466653 677888888888777 11
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
...+..++++++|++|++++|.+.
T Consensus 136 ------------l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 136 ------------LPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ------------CCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ------------cCchHhhcccCcccEEecCCCccc
Confidence 022355666777777777766543
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=2e-19 Score=168.37 Aligned_cols=249 Identities=19% Similarity=0.257 Sum_probs=140.4
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+|. ++++++|++|++++|.+..++. +.++++|++|++++|.+ ..++. ++++++|++|++++|.+ ..
T Consensus 78 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~l~~n~l-~~--- 148 (466)
T 1o6v_A 78 NQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDP--LKNLTNLNRLELSSNTI-SD--- 148 (466)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GTTCTTCSEEEEEEEEE-CC---
T ss_pred CccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC-CCChH--HcCCCCCCEEECCCCcc-CC---
Confidence 45677776 9999999999999999998876 89999999999999976 55665 88999999999999877 21
Q ss_pred ccCccccCC--------chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccc
Q 037371 81 EEGSVLCDD--------AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAY 151 (330)
Q Consensus 81 ~~~~~~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~ 151 (330)
++.-..... .......+.++++|+.|++++|....+..+ ..+.+|++|++ ++.. ... ..+..
T Consensus 149 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l---~~~--~~~~~ 219 (466)
T 1o6v_A 149 ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQI---SDI--TPLGI 219 (466)
T ss_dssp CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCC---CCC--GGGGG
T ss_pred ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh----ccCCCCCEEEecCCcc---ccc--ccccc
Confidence 000000000 000001133444444444444433222111 12233444444 2211 111 11334
Q ss_pred ccCccEEEEEccCcceeee------------CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccc
Q 037371 152 MENLQELELGSSKLEEMKI------------DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTM 219 (330)
Q Consensus 152 l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l 219 (330)
+++|+.|+++++.++.+.. .........+...+++|++|++++|.+..++.+..+++|+.|+++++.+
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 299 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcc
Confidence 4445555554433332210 0000000111234455555555555444444455555555555555555
Q ss_pred cccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371 220 EEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP 284 (330)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp 284 (330)
.++. .+..+++|+.|+++++ .+..+.. ...+++|+.|++.+| ++..++
T Consensus 300 ~~~~--------------~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 300 EDIS--------------PISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp SCCG--------------GGGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred cCch--------------hhcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch
Confidence 4441 3667899999999999 4555433 446899999999997 666664
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=165.44 Aligned_cols=231 Identities=19% Similarity=0.270 Sum_probs=183.4
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
....++.++.++..+|..+. ++++.|++++|.+ ..++...+.++++|++|++++|.+ ....+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i---------------~~i~~ 105 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHI---------------RTIEI 105 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCC---------------CEECG
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcC---------------CccCh
Confidence 45688888888999998665 6899999999987 455544499999999999999998 43556
Q ss_pred HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcc
Q 037371 95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDST 173 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~ 173 (330)
..+..+++|+.|++++|.+..+.. ..+..+.+|++|++.-+. ........+..+++|+.|+++ ++.++.+....
T Consensus 106 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~- 180 (440)
T 3zyj_A 106 GAFNGLANLNTLELFDNRLTTIPN--GAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGA- 180 (440)
T ss_dssp GGGTTCSSCCEEECCSSCCSSCCT--TTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred hhccCCccCCEEECCCCcCCeeCH--hHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcch-
Confidence 778899999999999997664332 223446779999983222 344445568899999999999 57777664433
Q ss_pred cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371 174 EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (330)
...+++|++|++++|.+..++.+..+++|+.|+|++|.+..+.+ ..+..+++|+.|+++++
T Consensus 181 -------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 181 -------FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP------------GSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp -------TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTC
T ss_pred -------hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh------------hhhccCccCCEEECCCC
Confidence 36789999999999988888889999999999999999998866 27888999999999998
Q ss_pred cccccccCC-CCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371 254 TNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNSSS 289 (330)
Q Consensus 254 ~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~ 289 (330)
.+..+... ...+++|+.|+++++ +++.+|.....
T Consensus 242 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 276 (440)
T 3zyj_A 242 -QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFT 276 (440)
T ss_dssp -CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTS
T ss_pred -ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhc
Confidence 66666554 345899999999995 88888876543
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.3e-19 Score=155.85 Aligned_cols=196 Identities=19% Similarity=0.221 Sum_probs=105.9
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
..+++++++++++.+|..+. ++|++|++++|.+ ..++...+.++++|++|++++|.+ .....
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~i~~ 78 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKL---------------QTLPA 78 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCC-SCCCTTSSSSCTTCCEEECCSSCC---------------SCCCT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCC-CeeCHHHhcCCCCCCEEECCCCcc---------------CeeCh
Confidence 46778888888877776543 5688888888866 444543477888888888888777 22223
Q ss_pred HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371 95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE 174 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 174 (330)
..+..+++|++|++++|.+..+ ....+..+++|++|+++.+.++.+....
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~----------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~-- 128 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQAL----------------------------PIGVFDQLVNLAELRLDRNQLKSLPPRV-- 128 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCC----------------------------CTTTTTTCSSCCEEECCSSCCCCCCTTT--
T ss_pred hhhcCCCCCCEEECCCCcCCcC----------------------------CHhHcccccCCCEEECCCCccCeeCHHH--
Confidence 3456777888887776653221 1122344445555555544444332221
Q ss_pred ccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371 175 EVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR 252 (330)
Q Consensus 175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (330)
...+++|++|++++|.+..++ .+..+++|+.|+++++.+..+++ ..+..+++|++|++++
T Consensus 129 ------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 129 ------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE------------GAFDKLTELKTLKLDN 190 (270)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCEEECCS
T ss_pred ------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh------------hHhccCCCcCEEECCC
Confidence 134455555555555443333 24445555555555555544433 1334445555555555
Q ss_pred ccccccccCC-CCCCCCccEEEEccC
Q 037371 253 GTNVKSVYPN-PLPFPKLKKIQVFHC 277 (330)
Q Consensus 253 ~~~l~~l~~~-~~~~~~L~~L~i~~c 277 (330)
+ .+..++.. ...+++|+.|++.++
T Consensus 191 N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 191 N-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cCCcCCHHHhccccCCCEEEecCC
Confidence 4 34443333 222455555555543
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=1.6e-19 Score=157.31 Aligned_cols=208 Identities=19% Similarity=0.207 Sum_probs=144.8
Q ss_pred CCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
++.++|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+ ..++...+.++++|++|++++|.+
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l------ 88 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI------ 88 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCC------
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHHHccCCcCCCEEECCCCcc------
Confidence 4667887765 579999999999987765 788899999999999977 455554488999999999999888
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
....+..+..+++|++|++++|... ......+..+++|++|++
T Consensus 89 ---------~~~~~~~~~~l~~L~~L~l~~n~l~----------------------------~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 89 ---------QSLALGAFSGLSSLQKLVAVETNLA----------------------------SLENFPIGHLKTLKELNV 131 (276)
T ss_dssp ---------CEECTTTTTTCTTCCEEECTTSCCC----------------------------CSTTCCCTTCTTCCEEEC
T ss_pred ---------CccChhhhcCCccccEEECCCCCcc----------------------------ccCchhcccCCCCCEEEC
Confidence 3344556778888888887765422 111223667778888888
Q ss_pred EccCcceee-eCcccccCccCCCCCCCccEEEEecccccccC--cccccCCcc----EEEEecccccccccccccccccc
Q 037371 161 GSSKLEEMK-IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLK----QLNMQGFTMEEIISVDKLSDISE 233 (330)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~----~L~L~~~~l~~~~~~~~~~~~~~ 233 (330)
+.|.++.+. +.. ...+++|++|++++|.+..++ .+..+++|+ .|+++++.+..+.+
T Consensus 132 ~~n~l~~~~l~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~--------- 194 (276)
T 2z62_A 132 AHNLIQSFKLPEY--------FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP--------- 194 (276)
T ss_dssp CSSCCCCCCCCGG--------GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT---------
T ss_pred cCCccceecCchh--------hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc---------
Confidence 877766532 222 255677888888888665543 455555555 77888877777754
Q ss_pred cccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccC
Q 037371 234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHC 277 (330)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c 277 (330)
......+|+.|+++++ .++.++... ..+++|+.|++.++
T Consensus 195 ----~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 195 ----GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ----TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ----cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 2223347888888877 466665543 34778888888764
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=3.4e-19 Score=166.11 Aligned_cols=231 Identities=22% Similarity=0.259 Sum_probs=182.9
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
....++.++.+++.+|..+. +++++|++++|.+.+..|. .+.++++|++|++++|.+ ....+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i---------------~~~~~ 116 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSI---------------RQIEV 116 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCC---------------CEECT
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCcc---------------CCcCh
Confidence 45788888888999998654 6899999999988544444 499999999999999988 43456
Q ss_pred HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE-ccCcceeeeCcc
Q 037371 95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG-SSKLEEMKIDST 173 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~ 173 (330)
..+..+++|+.|++++|.+..+.. .....+.+|++|++.-+. ........+..+++|+.|+++ ++.++.+....
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~- 191 (452)
T 3zyi_A 117 GAFNGLASLNTLELFDNWLTVIPS--GAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGA- 191 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCT--TTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-
T ss_pred hhccCcccCCEEECCCCcCCccCh--hhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhh-
Confidence 778899999999999988664332 223446679999983222 344444568899999999999 68887765443
Q ss_pred cccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371 174 EEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 174 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (330)
...+++|++|++++|.+..++.+..+++|+.|+|++|.+.++.+. .+..+++|+.|+++++
T Consensus 192 -------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 192 -------FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG------------SFHGLSSLKKLWVMNS 252 (452)
T ss_dssp -------TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGG------------GGTTCTTCCEEECTTS
T ss_pred -------ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcc------------cccCccCCCEEEeCCC
Confidence 367899999999999888888899999999999999999988662 7788999999999998
Q ss_pred cccccccCC-CCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371 254 TNVKSVYPN-PLPFPKLKKIQVFHCRQLKKLPLNSSS 289 (330)
Q Consensus 254 ~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~lp~~~~~ 289 (330)
.+..+... ...+++|+.|+++++ +++.+|.....
T Consensus 253 -~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 287 (452)
T 3zyi_A 253 -QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFT 287 (452)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSST
T ss_pred -cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhc
Confidence 56665444 445899999999996 88888876543
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=162.62 Aligned_cols=241 Identities=16% Similarity=0.116 Sum_probs=178.1
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|+++++|++|++++|.+..++ ..+..+++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l---- 136 (353)
T 2z80_A 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPY---- 136 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCSEEECTTCCC----
T ss_pred CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCCEEECCCCCC----
Confidence 46777887 6999999999999999999764 5789999999999999987 567766689999999999999988
Q ss_pred ccccCccccCCchhhH-HHhccCcCcceeeEEEec-hhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCcc
Q 037371 79 EEEEGSVLCDDAEPLM-KELLGLKHLNVLSWSFRS-SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQ 156 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 156 (330)
..... ..+..+++|++|++++|. ...+. ......+..|++|++.... ........+..+++|+
T Consensus 137 -----------~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 137 -----------KTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVS 201 (353)
T ss_dssp -----------SSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEE
T ss_pred -----------cccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC--cCccCHHHHhccccCC
Confidence 21111 357889999999999984 33221 1222345679999993333 3455566788999999
Q ss_pred EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-----cccccCCccEEEEecccccccccccccccc
Q 037371 157 ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-----WLVFVQNLKQLNMQGFTMEEIISVDKLSDI 231 (330)
Q Consensus 157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 231 (330)
+|+++++.++.+..... ..+++|++|++++|.+...+ .....+.++.++++++.+.+.... .+
T Consensus 202 ~L~l~~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~----~l 269 (353)
T 2z80_A 202 HLILHMKQHILLLEIFV--------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF----QV 269 (353)
T ss_dssp EEEEECSCSTTHHHHHH--------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH----HH
T ss_pred eecCCCCccccchhhhh--------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh----hh
Confidence 99999887765432221 34789999999999665532 234567888889888666543110 00
Q ss_pred cccccCccccCcccceeecccccccccccCCC-CCCCCccEEEEccCC
Q 037371 232 SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNP-LPFPKLKKIQVFHCR 278 (330)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~ 278 (330)
. ..+..+++|+.|+++++ .++.++... ..+++|++|++.+++
T Consensus 270 ~----~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 270 M----KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp H----HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred H----HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 0 14677899999999998 777887775 568999999999974
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.2e-19 Score=157.17 Aligned_cols=191 Identities=19% Similarity=0.205 Sum_probs=138.4
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|.++++|++|++++|.+..+ |..+..+++|++|++++|...+.++...+..+++|++|++++|.+
T Consensus 42 n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l---- 117 (285)
T 1ozn_A 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL---- 117 (285)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC----
T ss_pred CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC----
Confidence 45677774 599999999999999999966 678999999999999999744666444599999999999999988
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
....+..+..+++|++|++++|.+.. .....+..+++|+.|
T Consensus 118 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 118 -----------QELGPGLFRGLAALQYLYLQDNALQA----------------------------LPDDTFRDLGNLTHL 158 (285)
T ss_dssp -----------CCCCTTTTTTCTTCCEEECCSSCCCC----------------------------CCTTTTTTCTTCCEE
T ss_pred -----------CEECHhHhhCCcCCCEEECCCCcccc----------------------------cCHhHhccCCCccEE
Confidence 33445667889999999988765321 122335666777777
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEeccccccccccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIG 236 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~ 236 (330)
++++|.++.+.... ...+++|++|++++|.+... .++.++++|+.|++++|.+.++++.
T Consensus 159 ~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 219 (285)
T 1ozn_A 159 FLHGNRISSVPERA--------FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE----------- 219 (285)
T ss_dssp ECCSSCCCEECTTT--------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-----------
T ss_pred ECCCCcccccCHHH--------hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-----------
Confidence 77766666553332 24567777777777755443 3566777777777777777666441
Q ss_pred CccccCcccceeeccccc
Q 037371 237 SEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 237 ~~~~~~~~L~~L~l~~~~ 254 (330)
.+..+++|++|++++++
T Consensus 220 -~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 220 -ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -HHTTCTTCCEEECCSSC
T ss_pred -HcccCcccCEEeccCCC
Confidence 45667777777777663
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.80 E-value=2.6e-19 Score=172.78 Aligned_cols=116 Identities=25% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 2 SLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
.+..+|. .|+++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+
T Consensus 43 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l----- 116 (606)
T 3vq2_A 43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKL----- 116 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS-STTCTTCCEEECTTSCC-----
T ss_pred CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh-cCCcccCCEEEccCCcc-----
Confidence 4445554 566777777777777766654 445667777777777777654433443 66777777777777666
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
....+..++++++|++|++++|...... +......+.+|+.|++
T Consensus 117 ----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 117 ----------ASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDL 160 (606)
T ss_dssp ----------CCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEEC
T ss_pred ----------ccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEc
Confidence 2122234667777777777776544211 1112233455777776
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=6.3e-19 Score=155.78 Aligned_cols=202 Identities=17% Similarity=0.249 Sum_probs=153.3
Q ss_pred ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
-+.++.++++++.+|..+. ++|++|++++|.+ ..+|..++.++++|++|++++|.+ +. ....+.
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l-~~------------~~~~~~ 72 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGL-SF------------KGCCSQ 72 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC-CE------------EEEEEH
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCcc-Cc------------ccCccc
Confidence 4688999999999998553 6899999999977 577877689999999999999988 22 223355
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
.+..+++|++|++++|.+.. ....+..+++|++|+++.+.++.+..
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~-----------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~----- 118 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT-----------------------------MSSNFLGLEQLEHLDFQHSNLKQMSE----- 118 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE-----------------------------EEEEEETCTTCCEEECTTSEEESSTT-----
T ss_pred ccccccccCEEECCCCcccc-----------------------------ChhhcCCCCCCCEEECCCCccccccc-----
Confidence 66678999999988765221 11236678999999999877765432
Q ss_pred cCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccc-cccccccccccccccCccccCcccceeeccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEE-IISVDKLSDISEIIGSEHNIFARLEYLTMWR 252 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (330)
......+++|++|++++|.+... ..+..+++|++|+++++.+.+ ..+ ..+..+++|++|++++
T Consensus 119 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 119 --FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQ 184 (306)
T ss_dssp --TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTT
T ss_pred --chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch------------hHHhhCcCCCEEECCC
Confidence 11246789999999999966543 357889999999999988876 333 2678899999999999
Q ss_pred ccccccccC-CCCCCCCccEEEEccCCCCCCC
Q 037371 253 GTNVKSVYP-NPLPFPKLKKIQVFHCRQLKKL 283 (330)
Q Consensus 253 ~~~l~~l~~-~~~~~~~L~~L~i~~c~~L~~l 283 (330)
+ .+..+.. ....+++|++|+++++ +++.+
T Consensus 185 n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 214 (306)
T 2z66_A 185 C-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSL 214 (306)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECTTS-CCSBC
T ss_pred C-CcCCcCHHHhcCCCCCCEEECCCC-ccCcc
Confidence 8 5666643 3456899999999986 34443
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=7.6e-19 Score=175.84 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=78.0
Q ss_pred ccC-ChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCch-hhhCCCCCCcEEEeccCCCCCcccc
Q 037371 4 SKL-PSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPP-QLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 4 ~~l-p~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
..+ |..|+++++|++|+|++|.+..+ |..+.++++|++|++++|.+.+.+|. .+++++++|++|++++|.+ +.
T Consensus 62 ~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l-~~--- 137 (844)
T 3j0a_A 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI-RS--- 137 (844)
T ss_dssp CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC-CC---
T ss_pred cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc-cc---
Confidence 455 66799999999999999999855 77899999999999999988665554 3488999999999999988 21
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
......++++++|++|++++|.+
T Consensus 138 ----------~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 138 ----------LYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ----------CCCCGGGGTCSSCCEEEEESSCC
T ss_pred ----------cccchhHhhCCCCCEEECCCCcC
Confidence 12235688999999999998865
No 51
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.3e-18 Score=162.11 Aligned_cols=93 Identities=24% Similarity=0.217 Sum_probs=54.1
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|+++++|..+. ++|++|++++|.+..++ ..+..+++|++|++++|.+.+..|.. ++++++|++|++++|.+ +.
T Consensus 10 n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~-- 83 (520)
T 2z7x_B 10 NGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKL-VK-- 83 (520)
T ss_dssp SCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCC-CE--
T ss_pred CCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCce-ee--
Confidence 34556665555 56666666666666554 35666666666666666553333333 66666666666666665 11
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
++.. .+++|++|++++|.+.
T Consensus 84 -------------lp~~--~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 84 -------------ISCH--PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp -------------EECC--CCCCCSEEECCSSCCS
T ss_pred -------------cCcc--ccCCccEEeccCCccc
Confidence 1111 5666666666666543
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=8.7e-19 Score=175.43 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=60.2
Q ss_pred hhhhccccccEeecCCCCCc-cc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 8 SGISNLVSLHHLDLSRTNIT-GL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~-~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
..|+++++|++|++++|... .+ |..+.++++|++|++++|.+.+..|.. ++++++|++|++++|.+
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~n~l----------- 109 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGL----------- 109 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCCEECTTCCC-----------
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCEeeCcCCCC-----------
Confidence 44666666666666666322 44 445666666666666666554333443 66666666666666655
Q ss_pred ccCCchhhHHH--hccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 86 LCDDAEPLMKE--LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 86 ~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
....+.. +.++++|++|++++|....... ......+.+|++|++
T Consensus 110 ----~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 110 ----SDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDF 155 (844)
T ss_dssp ----SSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEE
T ss_pred ----CcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEEC
Confidence 2222222 6667777777777665543210 011233455667766
No 53
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.3e-18 Score=155.24 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=170.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcE-EEeccCCCCCcc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEV-LRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~-L~l~~~~~~~~~ 78 (330)
++++++|..+. +++++|+|++|+|+.+|. .|.++++|++|++++|.+.+.+|..++.++++|++ +.+.+|.+
T Consensus 19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l---- 92 (350)
T 4ay9_X 19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL---- 92 (350)
T ss_dssp TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC----
T ss_pred CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc----
Confidence 46889998774 689999999999999987 57899999999999998878888777899999876 45566666
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccccc-Ccc
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYME-NLQ 156 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~-~L~ 156 (330)
....+..++.+++|+.|++++|.+..+..... .....+..+++ +... ........+..+. .++
T Consensus 93 -----------~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~--i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 93 -----------LYINPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESV 157 (350)
T ss_dssp -----------CEECTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCE
T ss_pred -----------cccCchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccc--cccccccchhhcchhhh
Confidence 33445678899999999999998655433211 11223556666 4433 3333334455554 688
Q ss_pred EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccccC--cccccCCccEEEEecccccccccccccccccc
Q 037371 157 ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISE 233 (330)
Q Consensus 157 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 233 (330)
.|++++|.++.+....+ ...+|++|.+.++ .++.++ .+.++++|++|++++|.++.++.
T Consensus 158 ~L~L~~N~i~~i~~~~f---------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--------- 219 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAF---------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--------- 219 (350)
T ss_dssp EEECCSSCCCEECTTSS---------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS---------
T ss_pred hhccccccccCCChhhc---------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh---------
Confidence 89999888887754433 3457889999765 676665 47889999999999999888843
Q ss_pred cccCccccCcccceeecccccccccccCCCCCCCCccEEEEcc
Q 037371 234 IIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFH 276 (330)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 276 (330)
..|.+|+.|.+.++..++.++. ...+++|+.+++.+
T Consensus 220 ------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3577888888888888888774 45588999998864
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.6e-18 Score=150.47 Aligned_cols=188 Identities=19% Similarity=0.286 Sum_probs=151.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. +++++|++++|.+..+|. .+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+
T Consensus 26 ~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l----- 97 (270)
T 2o6q_A 26 KKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL----- 97 (270)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCC-----
T ss_pred CCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcC-----
Confidence 46788897776 689999999999998876 789999999999999977 567776678999999999999988
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.......+..+++|++|++++|.+ .......+..+++|++|+
T Consensus 98 ----------~~~~~~~~~~l~~L~~L~l~~n~l----------------------------~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 98 ----------QALPIGVFDQLVNLAELRLDRNQL----------------------------KSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp ----------CCCCTTTTTTCSSCCEEECCSSCC----------------------------CCCCTTTTTTCTTCCEEE
T ss_pred ----------CcCCHhHcccccCCCEEECCCCcc----------------------------CeeCHHHhCcCcCCCEEE
Confidence 323345567888899988887642 222234578899999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
++.|.++.+.... ...+++|++|++++|.+..++ .+.++++|++|++++|.+..+++ .
T Consensus 140 Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~ 199 (270)
T 2o6q_A 140 LGYNELQSLPKGV--------FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE------------G 199 (270)
T ss_dssp CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT------------T
T ss_pred CCCCcCCccCHhH--------ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH------------H
Confidence 9988888664333 367899999999999777655 47889999999999999988865 2
Q ss_pred ccccCcccceeeccccc
Q 037371 238 EHNIFARLEYLTMWRGT 254 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~ 254 (330)
.+..+++|+.|++++++
T Consensus 200 ~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEecCCC
Confidence 57789999999999874
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=1.3e-18 Score=170.14 Aligned_cols=73 Identities=27% Similarity=0.412 Sum_probs=46.0
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
|.+..+|. .|+++++|++|++++|.+..+ |..+.++++|++|++++|.+ ..+|..+++++++|++|++++|.+
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEEECCCCcc
Confidence 34555664 367777777777777766644 44566677777777776655 345543466666777777766665
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=1.4e-18 Score=162.11 Aligned_cols=212 Identities=16% Similarity=0.141 Sum_probs=151.0
Q ss_pred hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 8 SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 8 ~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
.+++++++|++|++++|.+..+| .+..+++|++|++++|.+. .+| ++.+++|++|++++|.+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l------------- 97 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKL------------- 97 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCC-------------
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCC-------------
Confidence 46889999999999999999887 6899999999999999874 454 78999999999999988
Q ss_pred CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEcc-Cc
Q 037371 88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSS-KL 165 (330)
Q Consensus 88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~ 165 (330)
... .++++++|++|++++|.+..+. ...+.+|+.|++ ++.- ... .+..+++|++|+++.| .+
T Consensus 98 --~~~---~~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l---~~l---~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 98 --TNL---DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTL---TEI---DVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp --SCC---CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCC---SCC---CCTTCTTCCEEECTTCSCC
T ss_pred --cee---ecCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcc---cee---ccccCCcCCEEECCCCCcc
Confidence 222 2889999999999999876542 344667999998 4322 222 4788999999999955 44
Q ss_pred ceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCccc
Q 037371 166 EEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARL 245 (330)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 245 (330)
+.+ +...+++|++|++++|.++.++ ++.+++|+.|+++++.+..+ .++.+++|
T Consensus 162 ~~~-----------~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L 214 (457)
T 3bz5_A 162 TKL-----------DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL---------------DLNQNIQL 214 (457)
T ss_dssp CCC-----------CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC---------------CCTTCTTC
T ss_pred ccc-----------ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee---------------ccccCCCC
Confidence 433 2355677888888877666665 66777777777777766655 23445566
Q ss_pred ceeecccccccccccCCCCCCCCccEEEEccCCCCCCCC
Q 037371 246 EYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLP 284 (330)
Q Consensus 246 ~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp 284 (330)
+.|+++++ .+..++ ...+++|+.|+++++ +++.+|
T Consensus 215 ~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~ 249 (457)
T 3bz5_A 215 TFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELD 249 (457)
T ss_dssp SEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred CEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcC
Confidence 66666555 344433 333555555555553 344433
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.9e-19 Score=174.84 Aligned_cols=244 Identities=19% Similarity=0.215 Sum_probs=160.4
Q ss_pred CCccCCh-hhhccccccEeecCCCCCc--ccCh-hhhc--CcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCC
Q 037371 2 SLSKLPS-GISNLVSLHHLDLSRTNIT--GLPQ-ELKA--LEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRW 75 (330)
Q Consensus 2 ~l~~lp~-~l~~l~~L~~L~L~~~~~~--~lp~-~l~~--l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 75 (330)
.+..++. .|..+++|++|++++|.+. .++. .+.. .++|+.|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l- 417 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVLDLGLNEI- 417 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC-
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-hhCCCCCCEEeCCCCcC-
Confidence 3445543 5888999999999998643 4443 2222 357899999988775555544 88899999999998887
Q ss_pred CccccccCccccCCchhhH-HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcccccccccc
Q 037371 76 SVLEEEEGSVLCDDAEPLM-KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYME 153 (330)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~ 153 (330)
....+ ..+..+++|+.|++++|...... ......+..|+.|++ ++... ........+..++
T Consensus 418 --------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~-~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 418 --------------GQELTGQEWRGLENIFEIYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALK-NVDSSPSPFQPLR 480 (680)
T ss_dssp --------------EEECCSGGGTTCTTCCEEECCSCSEEECC--TTTTTTCTTCCEEECTTSCCB-CTTCSSCTTTTCT
T ss_pred --------------ccccCcccccCcccccEEecCCCCcceeC--hhhhhcCcccccchhcccccc-ccccCCcccccCC
Confidence 22232 56778888888888887654321 112233566777777 33220 1123345577788
Q ss_pred CccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc----------CcccccCCccEEEEecccccccc
Q 037371 154 NLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL----------TWLVFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l----------~~l~~l~~L~~L~L~~~~l~~~~ 223 (330)
+|+.|++++|.++.+.... ...+++|++|++++|.+..+ ..+.++++|++|+|++|.+..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDM--------LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp TCCEEECCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCEEECCCCCCCcCChhh--------hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 8888888877777554333 25677788888888755432 12567788888888887777665
Q ss_pred cccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEccCCCCCCCCCC
Q 037371 224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
. ..+..+++|+.|+++++ .++.++.... .+++|+.|+++++ +++.+|..
T Consensus 553 ~------------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 602 (680)
T 1ziw_A 553 V------------EVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKK 602 (680)
T ss_dssp T------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHH
T ss_pred H------------HHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChh
Confidence 4 14667778888888766 5666655543 4677888887774 66666543
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=3.5e-20 Score=164.42 Aligned_cols=236 Identities=17% Similarity=0.105 Sum_probs=151.1
Q ss_pred hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCC-CCCCchhhhC-------CCCCCcEEEeccCCCCCccccc
Q 037371 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRF-LSIIPPQLIS-------GFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~-~~~~p~~~~~-------~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
++..++|++|++++|.+ .+|..+... |+.|++++|.+ ...+|.. +. ++++|++|++++|.+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n~l------- 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSR-ILFGALRVLGISGLQELTLENLEV------- 107 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEEBC-------
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHH-HHHHHHHhcCcCCccEEEccCCcc-------
Confidence 45667788888888877 777766544 77778877766 2345553 43 677888888888777
Q ss_pred cCccccCCchhhHHHh--ccCcCcceeeEEEechhhHHHhhccc--cccCceEEEEEEeCCCCCCCccccccccccCccE
Q 037371 82 EGSVLCDDAEPLMKEL--LGLKHLNVLSWSFRSSLAVQKFLKYP--KLVSITQSVWVECGTYTRPPFNVLHLAYMENLQE 157 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 157 (330)
.+..+..+ ..+++|++|++++|.+.......... ....+|++|++.-.. ........+..+++|++
T Consensus 108 --------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 108 --------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALST 177 (312)
T ss_dssp --------BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCE
T ss_pred --------cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCE
Confidence 32344443 67788888888877665432111100 012567778873222 24444466788888999
Q ss_pred EEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-----cccccCCccEEEEeccccccccccccccccc
Q 037371 158 LELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-----WLVFVQNLKQLNMQGFTMEEIISVDKLSDIS 232 (330)
Q Consensus 158 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 232 (330)
|+++.|++....... .......+++|++|++++|.+..++ .+.++++|++|++++|.+.+.++.
T Consensus 178 L~Ls~N~l~~~~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------- 246 (312)
T 1wwl_A 178 LDLSDNPELGERGLI----SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA------- 246 (312)
T ss_dssp EECCSCTTCHHHHHH----HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-------
T ss_pred EECCCCCcCcchHHH----HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-------
Confidence 988866643210000 0111256788899999888666432 234678899999988888776431
Q ss_pred ccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCC
Q 037371 233 EIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPL 285 (330)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 285 (330)
.....+++|++|+++++ .++.++.... ++|++|+++++ +++.+|.
T Consensus 247 ----~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 247 ----PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp ----SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred ----hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh
Confidence 14455788888888887 5666554433 78888888884 7777766
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.2e-18 Score=153.04 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=122.5
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
.++++++++++++++++++.+|..+. ++++.|++++|.+. .++...+.++++|++|++++|.+ +. +
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l-~~---~------- 70 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-TK---L------- 70 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCC-CE---E-------
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCcc-Cc---c-------
Confidence 37788999999999999999998664 68999999999874 44444499999999999999988 22 1
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCccee
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEM 168 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 168 (330)
+ ....+++|+.|++++|.+..+. ..+..+++|++|++++|+++.+
T Consensus 71 -----~-~~~~l~~L~~L~Ls~N~l~~l~-----------------------------~~~~~l~~L~~L~l~~N~l~~l 115 (290)
T 1p9a_G 71 -----Q-VDGTLPVLGTLDLSHNQLQSLP-----------------------------LLGQTLPALTVLDVSFNRLTSL 115 (290)
T ss_dssp -----E-CCSCCTTCCEEECCSSCCSSCC-----------------------------CCTTTCTTCCEEECCSSCCCCC
T ss_pred -----c-CCCCCCcCCEEECCCCcCCcCc-----------------------------hhhccCCCCCEEECCCCcCccc
Confidence 1 1267888999988877643211 1234455555555555555444
Q ss_pred eeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371 169 KIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE 246 (330)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 246 (330)
.+..+ ..+++|++|++++|.+..++ .+..+++|+.|+|++|.+..++. ..+..+++|+
T Consensus 116 ~~~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------------~~~~~l~~L~ 175 (290)
T 1p9a_G 116 PLGAL--------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA------------GLLNGLENLD 175 (290)
T ss_dssp CSSTT--------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT------------TTTTTCTTCC
T ss_pred CHHHH--------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH------------HHhcCcCCCC
Confidence 32222 34455555555555444433 24455555555555555555433 1334455555
Q ss_pred eeecccccccccccCCCCCCCCccEEEEcc
Q 037371 247 YLTMWRGTNVKSVYPNPLPFPKLKKIQVFH 276 (330)
Q Consensus 247 ~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 276 (330)
.|+++++ .+..++......++|+.|.+.+
T Consensus 176 ~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp EEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred EEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 5555555 4444444444455555555554
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.3e-18 Score=154.08 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=123.7
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
.+..+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++. +..+++|++|++++|.+ +.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i-~~~~~--~~~l~~L~~L~L~~n~l-~~----------- 99 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI-TDLAP--LKNLTKITELELSGNPL-KN----------- 99 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCC-CCCGG--GTTCCSCCEEECCSCCC-SC-----------
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcC-CCChh--HccCCCCCEEEccCCcC-CC-----------
Confidence 3567889999999999888887 588899999999999976 55665 88999999999999888 21
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
...+..+++|++|++++|.+..+.. ...+.+|+.|++ ++.- ... ..+..+++|+.|+++.|.++.
T Consensus 100 -----~~~~~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l---~~~--~~l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 100 -----VSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQI---TNI--SPLAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp -----CGGGTTCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCC---CCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred -----chhhcCCCCCCEEECCCCCCCCchh----hcCCCCCCEEECCCCcc---CcC--ccccCCCCccEEEccCCcCCC
Confidence 2357888889998888776554332 123445666665 2211 111 125566666666666555543
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY 247 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 247 (330)
+.. ...+++|++|++++|.+..++.+..+++|++|++++|.+.++. .+..+++|+.
T Consensus 166 ~~~----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------------~l~~l~~L~~ 221 (308)
T 1h6u_A 166 LTP----------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS--------------PLANTSNLFI 221 (308)
T ss_dssp CGG----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG--------------GGTTCTTCCE
T ss_pred Chh----------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc--------------cccCCCCCCE
Confidence 321 2445666666666665555555666666666666666655542 2345566666
Q ss_pred eecccc
Q 037371 248 LTMWRG 253 (330)
Q Consensus 248 L~l~~~ 253 (330)
|+++++
T Consensus 222 L~l~~N 227 (308)
T 1h6u_A 222 VTLTNQ 227 (308)
T ss_dssp EEEEEE
T ss_pred EEccCC
Confidence 666655
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=2.9e-18 Score=164.06 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=34.7
Q ss_pred ccccCcccceeecccccccccc-cCCCCCCCCccEEEEccCCCCCCCCCCC
Q 037371 238 EHNIFARLEYLTMWRGTNVKSV-YPNPLPFPKLKKIQVFHCRQLKKLPLNS 287 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~L~~lp~~~ 287 (330)
.+..+++|+.|++++| .+..+ +.....+++|++|++++| +++.+|...
T Consensus 465 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 465 IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred hhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHH
Confidence 5667788888888888 45555 334456889999999986 677776543
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=6.6e-19 Score=168.56 Aligned_cols=235 Identities=17% Similarity=0.139 Sum_probs=161.6
Q ss_pred cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhh-------------------hCCCCCCc
Q 037371 5 KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQL-------------------ISGFSKLE 65 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~-------------------~~~l~~L~ 65 (330)
.+|..+..+++|++|++++|.+..+|..+..+ +|++|++++|.+ ..+|... ...+++|+
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~ 350 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBC-SSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCC
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcc-cccCcccccccCEEeCcCCccccccccccCCCCC
Confidence 34566777777777777777777777766666 677777766655 3444310 13566666
Q ss_pred EEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc
Q 037371 66 VLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF 144 (330)
Q Consensus 66 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~ 144 (330)
+|++++|.+ +. ....+..+..+++|+.|++++|....... ....+.+|+.|++ ++.. ....
T Consensus 351 ~L~l~~n~l-~~------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l--~~~~ 412 (570)
T 2z63_A 351 FLDLSRNGL-SF------------KGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNL--KQMS 412 (570)
T ss_dssp EEECCSSCC-BE------------EEEEEHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEE--ESCT
T ss_pred EEeCcCCcc-Cc------------cccccccccccCccCEEECCCCccccccc---cccccCCCCEEEccCCcc--cccc
Confidence 777766665 21 11235667788888888888776543221 1234566888887 3322 1111
Q ss_pred cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc---ccCcccccCCccEEEEecccccc
Q 037371 145 NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK---DLTWLVFVQNLKQLNMQGFTMEE 221 (330)
Q Consensus 145 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~---~l~~l~~l~~L~~L~L~~~~l~~ 221 (330)
....+..+++|++|+++.+.+....+.. ...+++|++|++++|.+. .+..+..+++|++|++++|.+.+
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTT--------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhh--------hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 2245778899999999977776553333 367899999999999664 24478899999999999999988
Q ss_pred cccccccccccccccCccccCcccceeecccccccccccCC-CCCCCCccEEEEccCCCC
Q 037371 222 IISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPN-PLPFPKLKKIQVFHCRQL 280 (330)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~c~~L 280 (330)
+.+ ..+..+++|++|+++++ .+..++.. ...+++|+.|++.+++--
T Consensus 485 ~~~------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 485 LSP------------TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ECT------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCh------------hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 866 26788999999999998 66666554 345899999999997543
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=4.8e-18 Score=164.31 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=83.6
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.++++|. .|.++++|++|+|++|.++.+|. .|.++++|++|++++|++ ..+|..+|.++++|++|++++|.+
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L~Ls~N~l---- 136 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNL---- 136 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEEECTTSCC----
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEEECCCCcC----
Confidence 56777775 58888888888888888887765 577888888888888866 566665688888888888888877
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
.......++++++|++|++++|.+..+. .......+..|+.|++
T Consensus 137 -----------~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 137 -----------ASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDL 180 (635)
T ss_dssp -----------CCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEEC
T ss_pred -----------CCCChhhhhcCcccCeeccccCccccCC-Cchhhccchhhhhhcc
Confidence 2223334788889999999888754321 1111233456888887
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2.4e-17 Score=157.74 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=74.8
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccC-hhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLP-QELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|+++++|..+. ++|++|++++|.+..+| ..+..+++|++|++++|.+.+..|. ++.++++|++|++++|.+ +.
T Consensus 41 ~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~-- 114 (562)
T 3a79_B 41 RNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYLDVSHNRL-QN-- 114 (562)
T ss_dssp SCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEEECTTSCC-CE--
T ss_pred CCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEEECCCCcC-Cc--
Confidence 45777887665 68888888888888766 4778888888888888877443344 488888888888888877 22
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 134 (330)
++.. .+++|++|++++|.+..+.. ......+.+|+.|++
T Consensus 115 -------------lp~~--~l~~L~~L~Ls~N~l~~l~~-p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 115 -------------ISCC--PMASLRHLDLSFNDFDVLPV-CKEFGNLTKLTFLGL 153 (562)
T ss_dssp -------------ECSC--CCTTCSEEECCSSCCSBCCC-CGGGGGCTTCCEEEE
T ss_pred -------------cCcc--ccccCCEEECCCCCccccCc-hHhhcccCcccEEec
Confidence 2222 67888888888877554220 011122345666666
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=1.6e-18 Score=165.25 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=137.6
Q ss_pred CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
++++++|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.+.+ +++.+++++++|++|++++|.+
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l----- 86 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHL----- 86 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCC-----
T ss_pred CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCcc-----
Confidence 46788888765 6899999999998865 5678899999999999997744 4433488999999999999888
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
....+..++++++|++|++++|.+..... ......+.+|++|++ ++.. ........+..+++|++|
T Consensus 87 ----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 87 ----------SSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVET--FSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp ----------CSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSS--CCEECTTTTTTCCEEEEE
T ss_pred ----------CccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCcc--ccccCHhhhhcccccCee
Confidence 44556668899999999998887653211 122344567888988 5442 122333467888999999
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-c-ccccCCccEEEEeccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-W-LVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~-l~~l~~L~~L~L~~~~l~~~ 222 (330)
+++.+.++...+... ..+++|++|++++|....++ + ++.+++|++|+++++.+.++
T Consensus 154 ~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 154 EIKALSLRNYQSQSL--------KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEETTCCEECTTTT--------TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eccCCcccccChhhh--------hccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 999877776544332 55677777887777544433 2 34577777777777766654
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=8.6e-19 Score=152.42 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=142.7
Q ss_pred hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
+..+++|+.|+++++.+..++ .+..+++|++|++++|.+ ..++. ++.+++|++|++++|.+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L~~n~l--------------- 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDISA--LKELTNLTYLILTGNQL--------------- 97 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCGG--GTTCTTCCEEECTTSCC---------------
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCchh--hcCCCCCCEEECCCCcc---------------
Confidence 556777888888887777665 467778888888887766 34443 77788888888888776
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK 169 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 169 (330)
....+..+..+++|++|++++|.+ .......+..+++|++|++++|.++.+.
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l----------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQL----------------------------QSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCC----------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccChhHhcCCcCCCEEECCCCcC----------------------------CccCHHHhccCCCCCEEECCCCccCccC
Confidence 223334456667777776665432 2222334678888999999877777554
Q ss_pred eCcccccCccCCCCCCCccEEEEecccccccCc--ccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTW--LVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY 247 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 247 (330)
... ...+++|++|++++|.+..++. ++.+++|+.|++++|.+..+++ ..+..+++|++
T Consensus 150 ~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~ 209 (272)
T 3rfs_A 150 KGV--------FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD------------GVFDRLTSLQY 209 (272)
T ss_dssp TTT--------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCE
T ss_pred HHH--------hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH------------HHHhCCcCCCE
Confidence 332 2567889999999997766553 6788999999999988887765 25677889999
Q ss_pred eecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcCCC
Q 037371 248 LTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK 291 (330)
Q Consensus 248 L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~ 291 (330)
|++++++- ...+++|+.+.+..+.--..+|.....+.
T Consensus 210 L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 210 IWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp EECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred EEccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 99988732 13366777777776544445665555433
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.4e-19 Score=158.04 Aligned_cols=230 Identities=16% Similarity=0.156 Sum_probs=167.9
Q ss_pred CCccCChhhhccccccEeecCCCCCc--ccChhhh-------cCcccceeccCCCCCCCCCchhhh-CCCCCCcEEEecc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNIT--GLPQELK-------ALEKLRYLNLDHTRFLSIIPPQLI-SGFSKLEVLRLLS 71 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~--~lp~~l~-------~l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~ 71 (330)
.+ .+|..+... |++|++++|.+. .+|..+. .+++|++|++++|.+.+.+|..++ ..+++|++|++++
T Consensus 54 ~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 130 (312)
T 1wwl_A 54 TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN 130 (312)
T ss_dssp TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES
T ss_pred cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC
Confidence 44 568877765 999999999885 5777665 799999999999988778887632 8899999999999
Q ss_pred CCCCCccccccCccccCCchhhHHHhccC-----cCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc-
Q 037371 72 RGRWSVLEEEEGSVLCDDAEPLMKELLGL-----KHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF- 144 (330)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~- 144 (330)
|.+ +. . +..+..+ ++|++|++++|.+.... ......+.+|+.|++ +... ...
T Consensus 131 N~l-~~--------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l---~~~~ 189 (312)
T 1wwl_A 131 VSW-AT--------------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFS--CEQVRVFPALSTLDLSDNPE---LGER 189 (312)
T ss_dssp CBC-SS--------------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCC--TTTCCCCSSCCEEECCSCTT---CHHH
T ss_pred CCC-cc--------------h-hHHHHHHHHhhcCCCcEEEeeCCCCccch--HHHhccCCCCCEEECCCCCc---Ccch
Confidence 988 22 2 3444444 89999999998865432 122334667888888 4322 211
Q ss_pred -cccc--cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc---CcccccCCccEEEEeccc
Q 037371 145 -NVLH--LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL---TWLVFVQNLKQLNMQGFT 218 (330)
Q Consensus 145 -~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l---~~l~~l~~L~~L~L~~~~ 218 (330)
.... +..+++|++|+++.|.++.+.... ......+++|++|++++|.+... +.+..+++|++|++++|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVC-----SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-----HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHH-----HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 1122 378999999999988877332110 00013568999999999976663 356678999999999999
Q ss_pred ccccccccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371 219 MEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 277 (330)
++.++. ... ++|++|+++++ .++.++. ...+++|++|++.+.
T Consensus 265 l~~ip~-------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 265 LKQVPK-------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSSCCS-------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred cChhhh-------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 987744 232 89999999998 7777754 666999999999985
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=5e-18 Score=150.27 Aligned_cols=183 Identities=21% Similarity=0.283 Sum_probs=149.4
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
+.+..+| .+..+++|++|++++|.+..++. +..+++|++|++++|.+ ..++. +..+++|++|++++|.+ +
T Consensus 51 ~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~l~~n~l-~---- 120 (308)
T 1h6u_A 51 TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSA--IAGLQSIKTLDLTSTQI-T---- 120 (308)
T ss_dssp SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGG--GTTCTTCCEEECTTSCC-C----
T ss_pred CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchh--hcCCCCCCEEECCCCCC-C----
Confidence 3567777 79999999999999999998887 99999999999999987 55664 89999999999999988 2
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
. ...+..+++|+.|++++|.+..+.. ...+.+|+.|++ ++.- .. ...+..+++|+.|+
T Consensus 121 ----------~--~~~l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l---~~--~~~l~~l~~L~~L~ 179 (308)
T 1h6u_A 121 ----------D--VTPLAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQV---SD--LTPLANLSKLTTLK 179 (308)
T ss_dssp ----------C--CGGGTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC---CC--CGGGTTCTTCCEEE
T ss_pred ----------C--chhhcCCCCCCEEECCCCccCcCcc----ccCCCCccEEEccCCcC---CC--ChhhcCCCCCCEEE
Confidence 1 1238899999999999998766544 234567999999 4432 22 22388999999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIIS 224 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~ 224 (330)
+++|.++.+.. ...+++|++|++++|.+..++.+..+++|+.|++++|.+...+.
T Consensus 180 l~~n~l~~~~~----------l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 180 ADDNKISDISP----------LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCSSCCCCCGG----------GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCccCcChh----------hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCe
Confidence 99888875532 35789999999999988887789999999999999998877643
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=9.7e-20 Score=161.95 Aligned_cols=234 Identities=14% Similarity=0.062 Sum_probs=176.1
Q ss_pred CCCccCC-hhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLP-SGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp-~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+..++ ..|+++++|++|++++|.+..++. +..+++|++|++++|.+ ..++ ..++|++|++++|.+ +.
T Consensus 44 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l-~~l~-----~~~~L~~L~l~~n~l-~~-- 113 (317)
T 3o53_A 44 NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL-----VGPSIETLHAANNNI-SR-- 113 (317)
T ss_dssp SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE-EEEE-----ECTTCCEEECCSSCC-SE--
T ss_pred CccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc-cccc-----CCCCcCEEECCCCcc-CC--
Confidence 4567777 579999999999999999986665 89999999999999976 3333 448999999999988 22
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCcccccc-ccccCccEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHL-AYMENLQEL 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~l~~L~~L 158 (330)
.. ...+++|+.|++++|.+..+.. .....+..|+.|++.... ........+ ..+++|++|
T Consensus 114 ------------~~---~~~~~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 114 ------------VS---CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp ------------EE---ECCCSSCEEEECCSSCCCSGGG--BCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEE
T ss_pred ------------cC---ccccCCCCEEECCCCCCCCccc--hhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEE
Confidence 11 2246889999999998765432 122346679999882222 244444444 478999999
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEecccccccccccccccccccccC
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
+++.|.++.+.. ...+++|++|++++|.+..++ .+..+++|+.|++++|.+..++.
T Consensus 175 ~L~~N~l~~~~~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~------------- 231 (317)
T 3o53_A 175 NLQYNFIYDVKG----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK------------- 231 (317)
T ss_dssp ECTTSCCCEEEC----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT-------------
T ss_pred ECCCCcCccccc----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh-------------
Confidence 999888886632 124789999999999777754 58889999999999999998754
Q ss_pred ccccCcccceeeccccccc-ccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 238 EHNIFARLEYLTMWRGTNV-KSVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
.+..+++|+.|++++++-. ..++.....+++|+.+.+.++..++..+..
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 6778899999999998543 233333445888999999887777765433
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.5e-18 Score=161.78 Aligned_cols=232 Identities=16% Similarity=0.128 Sum_probs=140.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCc-ccChhhhcCccc-------------ceeccCCCCCCCCCchhhhCCCCCCcE
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNIT-GLPQELKALEKL-------------RYLNLDHTRFLSIIPPQLISGFSKLEV 66 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~-~lp~~l~~l~~L-------------~~L~l~~~~~~~~~p~~~~~~l~~L~~ 66 (330)
|++.++|++|+++++|++|++++|.+. .+|..++++.+| ++|++++|.+ ..+|. + .++|++
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~--~--~~~L~~ 95 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPE--L--PPHLES 95 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCS--C--CTTCSE
T ss_pred CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCC--C--cCCCCE
Confidence 456788888888888888888888777 788888887765 8888888865 45555 2 367888
Q ss_pred EEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCcc
Q 037371 67 LRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFN 145 (330)
Q Consensus 67 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~ 145 (330)
|++++|.+ .. ++. ..++|+.|++++|....+.. ...+|++|++ ++.- ..
T Consensus 96 L~l~~n~l---------------~~-lp~---~~~~L~~L~l~~n~l~~l~~------~~~~L~~L~L~~n~l---~~-- 145 (454)
T 1jl5_A 96 LVASCNSL---------------TE-LPE---LPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL---EK-- 145 (454)
T ss_dssp EECCSSCC---------------SS-CCC---CCTTCCEEECCSSCCSCCCS------CCTTCCEEECCSSCC---SS--
T ss_pred EEccCCcC---------------Cc-ccc---ccCCCcEEECCCCccCcccC------CCCCCCEEECcCCCC---CC--
Confidence 88888877 21 221 24788899988887554322 2356888888 4332 32
Q ss_pred ccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccc
Q 037371 146 VLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISV 225 (330)
Q Consensus 146 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~ 225 (330)
...+..+++|++|++++|.++.+. ....+|++|++++|.+..++.++++++|+.|++++|.+.+++..
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~lp------------~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CcccCCCCCCCEEECCCCcCcccC------------CCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC
Confidence 225889999999999987777532 12357888888888777777788888888888888777665321
Q ss_pred ccc---c-----cccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCC
Q 037371 226 DKL---S-----DISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLN 286 (330)
Q Consensus 226 ~~~---~-----~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 286 (330)
... . .+... ..++.+++|++|+++++ .+..++. .+++|+.|++++| +++.+|..
T Consensus 214 ~~~L~~L~l~~n~l~~l--p~~~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~~ 275 (454)
T 1jl5_A 214 PLSLESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPEL 275 (454)
T ss_dssp CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCCC
T ss_pred cCcccEEECcCCcCCcc--cccCCCCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCcc
Confidence 000 0 00011 12445566666666665 3433322 2356666666664 45555543
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=2.7e-19 Score=163.34 Aligned_cols=250 Identities=14% Similarity=0.057 Sum_probs=174.4
Q ss_pred CccCChhhhccccccEeecCCCCCcc-----cChhhhcCcccceeccCCCCC---CCCCchhh------hCCCCCCcEEE
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNITG-----LPQELKALEKLRYLNLDHTRF---LSIIPPQL------ISGFSKLEVLR 68 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~~-----lp~~l~~l~~L~~L~l~~~~~---~~~~p~~~------~~~l~~L~~L~ 68 (330)
+..++..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+ .+.+|..+ +..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34678889999999999999998872 444577899999999998743 33556542 37899999999
Q ss_pred eccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhH--HHhhcccccc---------CceEEEEE-Ee
Q 037371 69 LLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAV--QKFLKYPKLV---------SITQSVWV-EC 136 (330)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~---------~~L~~L~l-~~ 136 (330)
+++|.+ +. .+ ...++..+..+++|++|++++|.+... ..+....... ..|++|++ ++
T Consensus 101 Ls~n~l-~~----~~------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 101 LSDNAF-GP----TA------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CCSCCC-CT----TT------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CCCCcC-CH----HH------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 999998 11 00 124677889999999999999987532 2222222222 67999998 43
Q ss_pred CCCCCCCccc----cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc-----cc-Cccccc
Q 037371 137 GTYTRPPFNV----LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK-----DL-TWLVFV 206 (330)
Q Consensus 137 ~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-----~l-~~l~~l 206 (330)
.- ..... ..+..+++|+.|++++|.++....... .......+++|++|+|++|.+. .+ ..+..+
T Consensus 170 ~l---~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l---~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 170 RL---ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL---LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp CC---TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH---HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred CC---CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH---HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 22 32222 356788999999999777763211110 0112357899999999999663 23 357889
Q ss_pred CCccEEEEecccccccccccccccccccccCcc--ccCcccceeeccccccccc-----ccCCC-CCCCCccEEEEccCC
Q 037371 207 QNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH--NIFARLEYLTMWRGTNVKS-----VYPNP-LPFPKLKKIQVFHCR 278 (330)
Q Consensus 207 ~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~i~~c~ 278 (330)
++|+.|+|++|.+...+..... ..+ +.+++|+.|++++| .+.. ++... ..+++|+.|++.+|+
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~--------~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVV--------DAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHH--------HHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCcCEEECCCCCCchhhHHHHH--------HHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 9999999999988776331000 022 44899999999998 4544 44433 347999999999974
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=2.6e-17 Score=158.38 Aligned_cols=216 Identities=20% Similarity=0.163 Sum_probs=123.3
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|+++++|..+. ++|++|++++|.++.+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.+ +.
T Consensus 50 n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~l-~~--- 115 (622)
T 3g06_A 50 SGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV----LPPGLLELSIFSNPL-TH--- 115 (622)
T ss_dssp SCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC----CCTTCCEEEECSCCC-CC---
T ss_pred CCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC----CCCCCCEEECcCCcC-CC---
Confidence 46777887766 688888888888888876 577888888888866 45554 567888888888777 22
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc--ccccc--------
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF--NVLHL-------- 149 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~--~~~~l-------- 149 (330)
++. .+++|+.|++++|.+..++. ...+|+.|++ ++.. ... ....+
T Consensus 116 ------------l~~---~l~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l---~~l~~~~~~L~~L~L~~N 171 (622)
T 3g06_A 116 ------------LPA---LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQL---ASLPALPSELCKLWAYNN 171 (622)
T ss_dssp ------------CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCC---SCCCCCCTTCCEEECCSS
T ss_pred ------------CCC---CCCCcCEEECCCCCCCcCCC------CCCCCCEEECcCCcC---CCcCCccCCCCEEECCCC
Confidence 111 34566666666655433221 1245666665 2211 110 00111
Q ss_pred ------ccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371 150 ------AYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 150 ------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 223 (330)
..+++|+.|++++|.++.+. ..+++|+.|++++|.+..++. .+++|+.|++++|.+..++
T Consensus 172 ~l~~l~~~~~~L~~L~Ls~N~l~~l~------------~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 172 QLTSLPMLPSGLQELSVSDNQLASLP------------TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP 237 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC
T ss_pred CCCCCcccCCCCcEEECCCCCCCCCC------------CccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC
Confidence 12245555555554444321 123445555555554444332 2356666666666555542
Q ss_pred cccccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCCCCCCCCCCCcC
Q 037371 224 SVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCRQLKKLPLNSSS 289 (330)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~ 289 (330)
..+++|++|+++++ .+..++. .+++|+.|++++| +++.+|.....
T Consensus 238 ----------------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 238 ----------------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp ----------------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred ----------------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhh
Confidence 23466777777776 5555444 4567777777775 66666654443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=1.4e-17 Score=146.05 Aligned_cols=183 Identities=21% Similarity=0.170 Sum_probs=131.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+ ..++. .+.+++|++|++++|.+ .
T Consensus 20 ~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls~N~l-~--- 90 (290)
T 1p9a_G 20 RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV--DGTLPVLGTLDLSHNQL-Q--- 90 (290)
T ss_dssp SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEEC--CSCCTTCCEEECCSSCC-S---
T ss_pred CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccC--CCCCCcCCEEECCCCcC-C---
Confidence 46788998776 6999999999999966 45789999999999999977 55665 47899999999999988 2
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.++..+..+++|+.|++++|.+.. .....+..+++|+.|+
T Consensus 91 ------------~l~~~~~~l~~L~~L~l~~N~l~~----------------------------l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 91 ------------SLPLLGQTLPALTVLDVSFNRLTS----------------------------LPLGALRGLGELQELY 130 (290)
T ss_dssp ------------SCCCCTTTCTTCCEEECCSSCCCC----------------------------CCSSTTTTCTTCCEEE
T ss_pred ------------cCchhhccCCCCCEEECCCCcCcc----------------------------cCHHHHcCCCCCCEEE
Confidence 234456788899999888775331 2223456677777777
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccC
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGS 237 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~ 237 (330)
+++|+++.+....+ ..+++|+.|++++|.++.++ .+..+++|+.|+|++|.+..++.
T Consensus 131 L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~------------- 189 (290)
T 1p9a_G 131 LKGNELKTLPPGLL--------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK------------- 189 (290)
T ss_dssp CTTSCCCCCCTTTT--------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------
T ss_pred CCCCCCCccChhhc--------ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh-------------
Confidence 77666665533322 45677777777777666554 25667777777777777776644
Q ss_pred ccccCcccceeecccc
Q 037371 238 EHNIFARLEYLTMWRG 253 (330)
Q Consensus 238 ~~~~~~~L~~L~l~~~ 253 (330)
.....++|+.|++.++
T Consensus 190 ~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTCCCSEEECCSC
T ss_pred hhcccccCCeEEeCCC
Confidence 3444567777777754
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.8e-17 Score=144.05 Aligned_cols=190 Identities=17% Similarity=0.236 Sum_probs=136.5
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccc
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEE 81 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 81 (330)
.+..++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.+ ..++..+++++++|++|++++|.+
T Consensus 52 ~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l------- 121 (272)
T 3rfs_A 52 DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQL------- 121 (272)
T ss_dssp CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCC-------
T ss_pred Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCcC-------
Confidence 445555 6899999999999999998875 789999999999999987 455555589999999999999988
Q ss_pred cCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEE
Q 037371 82 EGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELG 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 161 (330)
....+..+..+++|++|++++|.+. ......+..+++|+.|+++
T Consensus 122 --------~~~~~~~~~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 122 --------QSLPDGVFDKLTNLTYLNLAHNQLQ----------------------------SLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp --------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECC
T ss_pred --------CccCHHHhccCCCCCEEECCCCccC----------------------------ccCHHHhccCccCCEEECC
Confidence 3334455778889999988876532 1222345677888888888
Q ss_pred ccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCcc
Q 037371 162 SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH 239 (330)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (330)
.|.++.+.... ...+++|++|++++|.+..++ .+..+++|+.|++++|.+.
T Consensus 166 ~n~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------------------- 218 (272)
T 3rfs_A 166 YNQLQSLPEGV--------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------------------- 218 (272)
T ss_dssp SSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------------------
T ss_pred CCCcCccCHHH--------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------------------
Confidence 77776553322 256778888888888666544 3677888888888887542
Q ss_pred ccCcccceeecccccccccccCCCC
Q 037371 240 NIFARLEYLTMWRGTNVKSVYPNPL 264 (330)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~l~~~~~ 264 (330)
+.+++|+.+++..+.-...++....
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCcHHHHHHHHHHhCCCcccCccc
Confidence 2345677776665543334444433
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=8.2e-18 Score=146.41 Aligned_cols=190 Identities=18% Similarity=0.153 Sum_probs=132.5
Q ss_pred CCCccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+..+|. .|.++++|++|++++|.+..++. .+..+++|++|++++|.+. .++...+.++++|++|++++|.+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l---- 112 (276)
T 2z62_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL---- 112 (276)
T ss_dssp CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCC----
T ss_pred CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCc----
Confidence 45677776 69999999999999999997765 7899999999999999874 44544499999999999999988
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.......+..+++|++|++++|.+.. ......+..+++|++|
T Consensus 113 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------------~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 113 -----------ASLENFPIGHLKTLKELNVAHNLIQS---------------------------FKLPEYFSNLTNLEHL 154 (276)
T ss_dssp -----------CCSTTCCCTTCTTCCEEECCSSCCCC---------------------------CCCCGGGGGCTTCCEE
T ss_pred -----------cccCchhcccCCCCCEEECcCCccce---------------------------ecCchhhccCCCCCEE
Confidence 22233347788899999888765321 0112346667777777
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCcc----EEEEecccccccC-cccccCCccEEEEecccccccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLN----TVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISE 233 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 233 (330)
++++|.++.+....+ ..+.+|+ +|++++|.+..++ ......+|+.|++++|.+..+++
T Consensus 155 ~Ls~N~l~~~~~~~~--------~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------- 217 (276)
T 2z62_A 155 DLSSNKIQSIYCTDL--------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD--------- 217 (276)
T ss_dssp ECCSSCCCEECGGGG--------HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT---------
T ss_pred ECCCCCCCcCCHHHh--------hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH---------
Confidence 777666665543322 2223333 6777777555543 23334477777777777776654
Q ss_pred cccCccccCcccceeecccc
Q 037371 234 IIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~~ 253 (330)
..+..+++|+.|+++++
T Consensus 218 ---~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 218 ---GIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ---TTTTTCCSCCEEECCSS
T ss_pred ---hHhcccccccEEEccCC
Confidence 14566777777777765
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.1e-17 Score=142.60 Aligned_cols=185 Identities=17% Similarity=0.178 Sum_probs=143.2
Q ss_pred CCCccCCh-hhhccccccEeecCCCC-CcccCh-hhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371 1 LSLSKLPS-GISNLVSLHHLDLSRTN-ITGLPQ-ELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWS 76 (330)
Q Consensus 1 ~~l~~lp~-~l~~l~~L~~L~L~~~~-~~~lp~-~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 76 (330)
|.++.+|. .|+++++|++|++++|. ++.+|. .+..+++|++|++++ |.+ ..+|..++.++++|++|++++|.+ +
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~L~l~~n~l-~ 118 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKFLGIFNTGL-K 118 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCEEEEEEECC-C
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCEEeCCCCCC-c
Confidence 56788887 69999999999999997 888876 688999999999998 766 566665589999999999999988 2
Q ss_pred ccccccCccccCCchhhHHHhccCcCcc---eeeEEEe-chhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccc
Q 037371 77 VLEEEEGSVLCDDAEPLMKELLGLKHLN---VLSWSFR-SSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYM 152 (330)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l 152 (330)
. ++. +..+++|+ .|++++| .+ .......+..+
T Consensus 119 --------------~-lp~-~~~l~~L~~L~~L~l~~N~~l----------------------------~~i~~~~~~~l 154 (239)
T 2xwt_C 119 --------------M-FPD-LTKVYSTDIFFILEITDNPYM----------------------------TSIPVNAFQGL 154 (239)
T ss_dssp --------------S-CCC-CTTCCBCCSEEEEEEESCTTC----------------------------CEECTTTTTTT
T ss_pred --------------c-ccc-cccccccccccEEECCCCcch----------------------------hhcCcccccch
Confidence 1 222 56666666 7777765 31 22223357788
Q ss_pred cCcc-EEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecc-cccccC--ccccc-CCccEEEEecccccccccccc
Q 037371 153 ENLQ-ELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLT--WLVFV-QNLKQLNMQGFTMEEIISVDK 227 (330)
Q Consensus 153 ~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~--~l~~l-~~L~~L~L~~~~l~~~~~~~~ 227 (330)
++|+ .|+++.|.++.+....+ .. ++|++|++++| .++.++ .+.++ ++|+.|+++++.+..++.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~--------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--- 222 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAF--------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--- 222 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTT--------TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC---
T ss_pred hcceeEEEcCCCCCcccCHhhc--------CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh---
Confidence 9999 99999888886644332 22 68999999999 587764 57888 999999999999988743
Q ss_pred cccccccccCccccCcccceeecccccc
Q 037371 228 LSDISEIIGSEHNIFARLEYLTMWRGTN 255 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 255 (330)
..|++|+.|++.++..
T Consensus 223 ------------~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 223 ------------KGLEHLKELIARNTWT 238 (239)
T ss_dssp ------------TTCTTCSEEECTTC--
T ss_pred ------------hHhccCceeeccCccC
Confidence 2789999999988743
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=3.5e-17 Score=140.47 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=126.1
Q ss_pred hcc-ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 11 SNL-VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 11 ~~l-~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
+.| ...++++++++.+..+|..+. ++++.|++++|.+.+..+. .++++++|++|++++|.+
T Consensus 10 C~C~~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l--------------- 71 (251)
T 3m19_A 10 CTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQL--------------- 71 (251)
T ss_dssp SEEEGGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCC---------------
T ss_pred eEcCCCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcC---------------
Confidence 444 567889999999888887665 6899999999987554444 488999999999999888
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceee
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMK 169 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 169 (330)
....+..+..+++|++|++++|.+. ......+..+++|++|++++|.++.+.
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLA----------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCHhHhccCCcCCEEECCCCccc----------------------------ccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 3344555777888888887766422 122234567778888888877776554
Q ss_pred eCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccCcccce
Q 037371 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY 247 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 247 (330)
... ...+++|++|++++|.+..++ .++.+++|++|+|++|.+..+++ ..+..+++|++
T Consensus 124 ~~~--------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~ 183 (251)
T 3m19_A 124 SGV--------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH------------GAFDRLGKLQT 183 (251)
T ss_dssp TTT--------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------TTTTTCTTCCE
T ss_pred hhH--------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH------------HHHhCCCCCCE
Confidence 332 255777888888888666654 36778888888888887777654 25666778888
Q ss_pred eecccc
Q 037371 248 LTMWRG 253 (330)
Q Consensus 248 L~l~~~ 253 (330)
|+++++
T Consensus 184 L~l~~N 189 (251)
T 3m19_A 184 ITLFGN 189 (251)
T ss_dssp EECCSC
T ss_pred EEeeCC
Confidence 888776
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.7e-18 Score=154.85 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=134.3
Q ss_pred hhhhcc--ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCC-CchhhhCCCCCCcEEEeccCCCCCccccccCc
Q 037371 8 SGISNL--VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSI-IPPQLISGFSKLEVLRLLSRGRWSVLEEEEGS 84 (330)
Q Consensus 8 ~~l~~l--~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 84 (330)
..+..+ +++++|+++++.+...+..+..+++|++|++++|.+... ++.. +..+++|++|++++|.+
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~~l---------- 130 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRL---------- 130 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBC----------
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCccc----------
Confidence 345555 788888888887776656677788888888888866433 5553 77888888888888877
Q ss_pred cccCCchhhHHHhccCcCcceeeEEEe-chhhHHHhhccccccCceEEEEE-EeCCCCCCCc-ccccccccc-CccEEEE
Q 037371 85 VLCDDAEPLMKELLGLKHLNVLSWSFR-SSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF-NVLHLAYME-NLQELEL 160 (330)
Q Consensus 85 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~l~~l~-~L~~L~l 160 (330)
....+..+..+++|++|++++| .+.. ..+......+.+|++|++ ++.. .... ....+..++ +|++|++
T Consensus 131 -----~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 131 -----SDPIVNTLAKNSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFD--FTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp -----CHHHHHHHTTCTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTT--CCHHHHHHHHHHSCTTCCEEEC
T ss_pred -----CHHHHHHHhcCCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCC--cChHHHHHHHHhcccCCCEEEe
Confidence 5567777888888888888877 3332 112222233566888888 5523 2322 233466778 8888888
Q ss_pred Ecc--CcceeeeCcccccCccCCCCCCCccEEEEeccc-ccc--cCcccccCCccEEEEeccc-cccccccccccccccc
Q 037371 161 GSS--KLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCR-GKD--LTWLVFVQNLKQLNMQGFT-MEEIISVDKLSDISEI 234 (330)
Q Consensus 161 ~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~--l~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~ 234 (330)
+++ .+++.... .....+++|++|++++|. +++ +..+.++++|++|+++++. +.....
T Consensus 203 ~~~~~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------- 265 (336)
T 2ast_B 203 SGYRKNLQKSDLS-------TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL---------- 265 (336)
T ss_dssp CSCGGGSCHHHHH-------HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG----------
T ss_pred CCCcccCCHHHHH-------HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH----------
Confidence 854 33311100 012356788888888884 443 5567778888888888753 222211
Q ss_pred ccCccccCcccceeecccc
Q 037371 235 IGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 235 ~~~~~~~~~~L~~L~l~~~ 253 (330)
..+..+++|+.|++++|
T Consensus 266 --~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 --LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp --GGGGGCTTCCEEECTTS
T ss_pred --HHHhcCCCCCEEeccCc
Confidence 14556788888888877
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=1.3e-16 Score=136.98 Aligned_cols=168 Identities=21% Similarity=0.300 Sum_probs=129.2
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. +++++|++++|.+..++. .+..+++|++|++++|.+.+ ++..++..+++|++|++++|.+
T Consensus 24 ~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l----- 95 (251)
T 3m19_A 24 KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQL----- 95 (251)
T ss_dssp CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCC-----
T ss_pred CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcc-----
Confidence 46788998776 699999999999996655 68999999999999998855 4444589999999999999998
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
....+..+..+++|++|++++|.+. ......+..+++|+.|+
T Consensus 96 ----------~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 96 ----------ASLPLGVFDHLTQLDKLYLGGNQLK----------------------------SLPSGVFDRLTKLKELR 137 (251)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred ----------cccChhHhcccCCCCEEEcCCCcCC----------------------------CcChhHhccCCcccEEE
Confidence 3344456778889999988876532 12223466788888888
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~ 222 (330)
+++|.++.+.... ...+++|++|+|++|.+..++ .+..+++|+.|++++|.+...
T Consensus 138 Ls~N~l~~~~~~~--------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 138 LNTNQLQSIPAGA--------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCCCCCTTT--------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCcCCccCHHH--------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888877654433 356788899999888766654 477888999999988776543
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.9e-17 Score=153.54 Aligned_cols=209 Identities=17% Similarity=0.158 Sum_probs=159.2
Q ss_pred ccChhhhcCc----ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCc
Q 037371 28 GLPQELKALE----KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHL 103 (330)
Q Consensus 28 ~lp~~l~~l~----~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 103 (330)
.+|..+..+. +|++|++++|.+.+..|.. ++.+++|++|++++|.+ ....+ +..+++|
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l---------------~~~~~--l~~l~~L 82 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVL---------------YETLD--LESLSTL 82 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCC---------------EEEEE--CTTCTTC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCC---------------CCCcc--cccCCCC
Confidence 5666665554 8999999999885554554 99999999999999998 22222 8899999
Q ss_pred ceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCC
Q 037371 104 NVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRN 182 (330)
Q Consensus 104 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 182 (330)
++|++++|.+..+. ...+|+.|++ ++.- .... ...+++|+.|++++|.++.+.+.. ..
T Consensus 83 ~~L~Ls~N~l~~l~-------~~~~L~~L~L~~N~l---~~~~---~~~l~~L~~L~L~~N~l~~~~~~~--------~~ 141 (487)
T 3oja_A 83 RTLDLNNNYVQELL-------VGPSIETLHAANNNI---SRVS---CSRGQGKKNIYLANNKITMLRDLD--------EG 141 (487)
T ss_dssp CEEECCSSEEEEEE-------ECTTCCEEECCSSCC---CCEE---ECCCSSCEEEECCSSCCCSGGGBC--------GG
T ss_pred CEEEecCCcCCCCC-------CCCCcCEEECcCCcC---CCCC---ccccCCCCEEECCCCCCCCCCchh--------hc
Confidence 99999998765432 2367888988 4322 3322 235689999999988887654333 35
Q ss_pred CCCCccEEEEecccccc--cCccc-ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371 183 GFRSLNTVVLRSCRGKD--LTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV 259 (330)
Q Consensus 183 ~~~~L~~L~L~~~~~~~--l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 259 (330)
.+++|++|++++|.+.. +..+. .+++|+.|+|++|.+..++ ....+++|+.|+++++ .+..+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------------~~~~l~~L~~L~Ls~N-~l~~~ 206 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------------GQVVFAKLKTLDLSSN-KLAFM 206 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------------CCCCCTTCCEEECCSS-CCCEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------------ccccCCCCCEEECCCC-CCCCC
Confidence 68999999999996665 33454 7999999999999998883 3345899999999998 67777
Q ss_pred cCCCCCCCCccEEEEccCCCCCCCCCCCcCCC
Q 037371 260 YPNPLPFPKLKKIQVFHCRQLKKLPLNSSSAK 291 (330)
Q Consensus 260 ~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~~ 291 (330)
+.....+++|+.|+++++ .+..+|.....+.
T Consensus 207 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~ 237 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQ 237 (487)
T ss_dssp CGGGGGGTTCSEEECTTS-CCCEECTTCCCCT
T ss_pred CHhHcCCCCccEEEecCC-cCcccchhhccCC
Confidence 766667899999999995 7888887765543
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=6.6e-17 Score=133.60 Aligned_cols=152 Identities=19% Similarity=0.270 Sum_probs=79.4
Q ss_pred hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
+.+++|++|++++|.+..+| .+..+++|++|++++|.+ ..++. ++.+++|++|++++|.+ .
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~-~~~~~--l~~l~~L~~L~l~~n~l---------------~ 101 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA-TNYNP--ISGLSNLERLRIMGKDV---------------T 101 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCC-SCCGG--GTTCTTCCEEEEECTTC---------------B
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCC-Ccchh--hhcCCCCCEEEeECCcc---------------C
Confidence 45556666666666666555 455666666666666533 33332 55666666666666555 2
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccC-cceee
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSK-LEEMK 169 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~ 169 (330)
...+..+..+++|+.|++++|.+. ......+..+++|++|++++|. ++++.
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~----------------------------~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHD----------------------------DSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCB----------------------------GGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred cccChhhcCCCCCCEEEecCCccC----------------------------cHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 233344555555555555544321 1112234455566666666443 44331
Q ss_pred eCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccc
Q 037371 170 IDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTM 219 (330)
Q Consensus 170 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l 219 (330)
....+++|++|++++|.+.+++.+..+++|+.|++++|.+
T Consensus 154 ----------~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 154 ----------PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ----------GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC--
T ss_pred ----------hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCccc
Confidence 1234556666666666555555556666666666666554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=146.89 Aligned_cols=225 Identities=15% Similarity=0.087 Sum_probs=143.4
Q ss_pred cccEeecCCCCCc--ccCh--hhhcCcccceeccCCCCCCCCCchhhh-CCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 15 SLHHLDLSRTNIT--GLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLI-SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 15 ~L~~L~L~~~~~~--~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
.++.+.+.++.+. .+.. .+..+++|++|++++|.+.+..|..++ ..+++|++|++++|.+... .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~---~-------- 133 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG---R-------- 133 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST---T--------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch---h--------
Confidence 4667777777665 1211 123456688888888877667776522 7788888888888877110 0
Q ss_pred chhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCC---cc-ccccccccCccEEEEEccC
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPP---FN-VLHLAYMENLQELELGSSK 164 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~---~~-~~~l~~l~~L~~L~l~~~~ 164 (330)
.......+..+++|++|++++|.+.... ......+.+|++|++ +... .. .. ...+..+++|++|++++|.
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFS--CEQVRAFPALTSLDLSDNPG---LGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCC--TTSCCCCTTCCEEECCSCTT---CHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhh--HHHhccCCCCCEEECCCCCC---ccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 0011244557888888888887764322 122234566788877 3321 11 11 1234678899999999777
Q ss_pred cceeeeCcccccCccCCCCCCCccEEEEeccccccc--Cccccc---CCccEEEEecccccccccccccccccccccCcc
Q 037371 165 LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFV---QNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH 239 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l---~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (330)
++.+..... .....+++|++|++++|.+... +.+..+ ++|++|++++|.++.++. ..
T Consensus 209 l~~l~~~~~-----~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-------------~~ 270 (310)
T 4glp_A 209 METPTGVCA-----ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-------------GL 270 (310)
T ss_dssp CCCHHHHHH-----HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-------------CC
T ss_pred CCchHHHHH-----HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-------------hh
Confidence 764322100 0013568899999999966654 334444 799999999998887743 22
Q ss_pred ccCcccceeecccccccccccCCCCCCCCccEEEEccC
Q 037371 240 NIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHC 277 (330)
Q Consensus 240 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 277 (330)
+++|+.|+++++ .++.++. ...+++|+.|++++.
T Consensus 271 --~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 271 --PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp --CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred --cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence 379999999988 6666644 456899999999885
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=2.1e-16 Score=152.12 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=140.1
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+ ..+|. .+++|+.|++++|.+ +.
T Consensus 71 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~l~~----~l~~L~~L~L~~N~l-~~--- 135 (622)
T 3g06_A 71 NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-THLPA----LPSGLCKLWIFGNQL-TS--- 135 (622)
T ss_dssp CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-CCCCC----CCTTCCEEECCSSCC-SC---
T ss_pred CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-CCCCC----CCCCcCEEECCCCCC-Cc---
Confidence 56777776 56788888888888888876 678888888888866 44444 456666777776665 21
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc--------------ccccCceEEEEEEeCCCCCCCccc
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY--------------PKLVSITQSVWVECGTYTRPPFNV 146 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~~~~~~~~ 146 (330)
+ +. .+++|++|++++|.+..++..... .....+|+.|++..+. .....
T Consensus 136 l------------p~---~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~--l~~l~- 197 (622)
T 3g06_A 136 L------------PV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ--LASLP- 197 (622)
T ss_dssp C------------CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC--CSCCC-
T ss_pred C------------CC---CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC--CCCCC-
Confidence 1 11 125555555555544332111100 0223556777762222 12111
Q ss_pred cccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccccccc
Q 037371 147 LHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVD 226 (330)
Q Consensus 147 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~ 226 (330)
..+++|+.|++++|.++.+. ..+++|++|++++|.++.++ ..+++|+.|++++|.+..++
T Consensus 198 ---~~~~~L~~L~L~~N~l~~l~------------~~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp--- 257 (622)
T 3g06_A 198 ---TLPSELYKLWAYNNRLTSLP------------ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLP--- 257 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSSCC------------CCCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCC---
T ss_pred ---CccchhhEEECcCCcccccC------------CCCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCC---
Confidence 13478999999988777542 23578999999999777766 56789999999998887762
Q ss_pred ccccccccccCccccCcccceeecccccccccccCCCCCCCCccEEEEccCC
Q 037371 227 KLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
. .+++|+.|++++| .+..++.....+++|+.|++.+++
T Consensus 258 -----------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 -----------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -----------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 2 5688999999988 677776666678999999999864
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.7e-16 Score=139.29 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=117.3
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
.+..+++|++|++++|.+..+|. +..+++|++|++++|.+ ..++. ++++++|++|++++|.+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~--l~~l~~L~~L~l~~n~l-------------- 102 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKV-------------- 102 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCC--------------
T ss_pred chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCcc-CCCcc--cccCCCCCEEECCCCcC--------------
Confidence 35678889999999998888864 78889999999999877 45555 78899999999999887
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
.. ...+..+++|++|++++|.+..+..+ ..+.+|+.|++ ++.- ... ..+..+++|+.|++++|.++.
T Consensus 103 -~~--~~~l~~l~~L~~L~L~~n~i~~~~~l----~~l~~L~~L~l~~n~l---~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 103 -KD--LSSLKDLKKLKSLSLEHNGISDINGL----VHLPQLESLYLGNNKI---TDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp -CC--GGGGTTCTTCCEEECTTSCCCCCGGG----GGCTTCCEEECCSSCC---CCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred -CC--ChhhccCCCCCEEECCCCcCCCChhh----cCCCCCCEEEccCCcC---Ccc--hhhccCCCCCEEEccCCcccc
Confidence 21 33478888888888888765543322 22445666666 3221 211 446666667777776666554
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
+.+ ...+++|++|++++|.+..++.+..+++|+.|++++|.+...
T Consensus 171 ~~~----------l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 171 IVP----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CGG----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred chh----------hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccCC
Confidence 321 245666777777766666666666667777777766655544
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.67 E-value=4.7e-16 Score=144.83 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=71.4
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE 174 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 174 (330)
.++++++|++|++++|.+..++. ...+|++|++ ++.. .. ...+..+++|+.|+++.|.++.+.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~------~~~~L~~L~L~~n~l---~~--l~~~~~l~~L~~L~l~~N~l~~l~----- 211 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQL---EE--LPELQNLPFLTAIYADNNSLKKLP----- 211 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCC---SS--CCCCTTCTTCCEEECCSSCCSSCC-----
T ss_pred ccCCCCCCCEEECCCCcCcccCC------CcccccEEECcCCcC---Cc--CccccCCCCCCEEECCCCcCCcCC-----
Confidence 47888888888888887554322 2346888888 4322 22 235788899999999877776431
Q ss_pred ccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371 175 EVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
...++|++|++++|.+..++.++.+++|++|++++|.+..+
T Consensus 212 -------~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 212 -------DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp -------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred -------CCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcc
Confidence 11247788888888666666677788888888887777665
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=7.7e-18 Score=152.44 Aligned_cols=250 Identities=14% Similarity=0.055 Sum_probs=164.8
Q ss_pred CCcc-CChhhhccccccEeecCCCCCcccC-----hhhhcCc-ccceeccCCCCCCCCCchhhhCCC-----CCCcEEEe
Q 037371 2 SLSK-LPSGISNLVSLHHLDLSRTNITGLP-----QELKALE-KLRYLNLDHTRFLSIIPPQLISGF-----SKLEVLRL 69 (330)
Q Consensus 2 ~l~~-lp~~l~~l~~L~~L~L~~~~~~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l-----~~L~~L~l 69 (330)
+++. +|..+...++|++|++++|.+...+ ..+..++ +|++|++++|.+....+.. +..+ ++|++|++
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNL 87 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEEC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEEC
Confidence 3443 3444555566999999999998766 5678888 8999999999885554543 5554 99999999
Q ss_pred ccCCCCCccccccCccccCCchhhHHHhccC-cCcceeeEEEechhhH--HHhhccccc-cCceEEEEE-EeCCCCCCCc
Q 037371 70 LSRGRWSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSLAV--QKFLKYPKL-VSITQSVWV-ECGTYTRPPF 144 (330)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~--~~~~~~~~~-~~~L~~L~l-~~~~~~~~~~ 144 (330)
++|.+ +. . ....+...+..+ ++|++|++++|.+... ..+...... ...|++|++ ++.- ...
T Consensus 88 s~n~l-~~---~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l---~~~ 153 (362)
T 3goz_A 88 SGNFL-SY---K-------SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL---GIK 153 (362)
T ss_dssp CSSCG-GG---S-------CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG---GGS
T ss_pred cCCcC-Ch---H-------HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC---CHH
Confidence 99998 21 0 022233446666 8999999999987542 223222222 357999999 4322 222
Q ss_pred cc----ccccccc-CccEEEEEccCcceeeeCcccccCccCCCCC-CCccEEEEecccccc-----cC-cccc-cCCccE
Q 037371 145 NV----LHLAYME-NLQELELGSSKLEEMKIDSTEEVKKLFRNGF-RSLNTVVLRSCRGKD-----LT-WLVF-VQNLKQ 211 (330)
Q Consensus 145 ~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~-----l~-~l~~-l~~L~~ 211 (330)
.. ..+..++ +|++|++++|.++........ .....+ ++|++|+|++|.+.+ ++ .+.. .++|++
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELA----KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH----HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 21 2344555 999999998887755432210 011234 589999999997666 22 3444 459999
Q ss_pred EEEecccccccccccccccccccccCccccCcccceeeccccc-------ccccccCCCCCCCCccEEEEccCC
Q 037371 212 LNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT-------NVKSVYPNPLPFPKLKKIQVFHCR 278 (330)
Q Consensus 212 L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~~~~L~~L~i~~c~ 278 (330)
|+|++|.+.+.+..... .....+++|+.|++++|. .+..+......+++|+.|+++++.
T Consensus 230 L~Ls~N~l~~~~~~~l~--------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLK--------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp EECCSSCCCCCCHHHHH--------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred EECcCCCCCcHHHHHHH--------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99999988876442111 145678999999999884 133333444457788888888753
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.2e-17 Score=147.59 Aligned_cols=188 Identities=22% Similarity=0.160 Sum_probs=141.2
Q ss_pred CccCChhhhccccccEeecCCCCCc-c-cChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccC-CCCCccc
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNIT-G-LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSR-GRWSVLE 79 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~-~-lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~-~~~~~~~ 79 (330)
+...+..+.++++|++|++++|.+. . +|..+..+++|++|++++|.+....+.. ++++++|++|++++| .+
T Consensus 82 l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l----- 155 (336)
T 2ast_B 82 MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF----- 155 (336)
T ss_dssp ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSC-----
T ss_pred ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCC-----
Confidence 4455556778999999999999987 3 8888899999999999999875566665 889999999999999 45
Q ss_pred cccCccccCCch-hhHHHhccCcCcceeeEEEe-chhhHHHhhccccccC-ceEEEEE-EeC-CCCCC-Ccccccccccc
Q 037371 80 EEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFR-SSLAVQKFLKYPKLVS-ITQSVWV-ECG-TYTRP-PFNVLHLAYME 153 (330)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~-~L~~L~l-~~~-~~~~~-~~~~~~l~~l~ 153 (330)
.. ..+..+..+++|++|++++| .+... .+......++ +|++|++ ++. . .. ......+..++
T Consensus 156 ----------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 156 ----------SEFALQTLLSSCSRLDELNLSWCFDFTEK-HVQVAVAHVSETITQLNLSGYRKN--LQKSDLSTLVRRCP 222 (336)
T ss_dssp ----------CHHHHHHHHHHCTTCCEEECCCCTTCCHH-HHHHHHHHSCTTCCEEECCSCGGG--SCHHHHHHHHHHCT
T ss_pred ----------CHHHHHHHHhcCCCCCEEcCCCCCCcChH-HHHHHHHhcccCCCEEEeCCCccc--CCHHHHHHHHhhCC
Confidence 32 36667889999999999998 65431 1122223355 8999999 553 2 12 22234567899
Q ss_pred CccEEEEEccC-cceeeeCcccccCccCCCCCCCccEEEEecc-cccc--cCcccccCCccEEEEecc
Q 037371 154 NLQELELGSSK-LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKD--LTWLVFVQNLKQLNMQGF 217 (330)
Q Consensus 154 ~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~--l~~l~~l~~L~~L~L~~~ 217 (330)
+|++|+++++. +++..+.. ...+++|++|++++| .+.+ +..+.++++|+.|+++++
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~--------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQE--------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGG--------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCEEeCCCCCcCCHHHHHH--------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999999555 55332222 356799999999999 4443 335788999999999987
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=2.5e-16 Score=151.29 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=136.9
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCD 88 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 88 (330)
.+..+.+|++|++++|.+..+| .+..+++|+.|++++|.+ ..++. +..+++|+.|++++|.+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l-~~~~~--l~~l~~L~~L~Ls~N~l-------------- 99 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKL-TDIKP--LTNLKNLGWLFLDENKI-------------- 99 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCC-CCCGG--GGGCTTCCEEECCSSCC--------------
T ss_pred chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCC-CCChh--hccCCCCCEEECcCCCC--------------
Confidence 3677889999999999998886 588999999999999977 45555 78999999999999888
Q ss_pred CchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 89 DAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 89 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
. .+..+..+++|+.|++++|.+..+..+ ..+.+|+.|++ ++.. ... ..+..+++|+.|++++|.++.
T Consensus 100 -~--~l~~l~~l~~L~~L~Ls~N~l~~l~~l----~~l~~L~~L~Ls~N~l---~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 100 -K--DLSSLKDLKKLKSLSLEHNGISDINGL----VHLPQLESLYLGNNKI---TDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp -C--CCTTSTTCTTCCEEECTTSCCCCCGGG----GGCTTCSEEECCSSCC---CCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred -C--CChhhccCCCCCEEEecCCCCCCCccc----cCCCccCEEECCCCcc---CCc--hhhcccCCCCEEECcCCcCCC
Confidence 2 123688899999999998887654432 33567888888 4322 222 567888999999999777775
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~ 223 (330)
+.+ ...+++|+.|+|++|.+..++.+..+++|+.|+|++|.+...+
T Consensus 168 ~~~----------l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 168 IVP----------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CGG----------GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred chh----------hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 432 3678899999999998888888888999999999998776653
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=3.3e-17 Score=149.51 Aligned_cols=217 Identities=18% Similarity=0.202 Sum_probs=153.9
Q ss_pred CChhhhccccccEeecCCCCCc----ccChhh-------hcCcccceeccCCCCCCC----CCchhhhCCCCCCcEEEec
Q 037371 6 LPSGISNLVSLHHLDLSRTNIT----GLPQEL-------KALEKLRYLNLDHTRFLS----IIPPQLISGFSKLEVLRLL 70 (330)
Q Consensus 6 lp~~l~~l~~L~~L~L~~~~~~----~lp~~l-------~~l~~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l~ 70 (330)
++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|.+.. .+|.. +..+++|++|+++
T Consensus 52 l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 52 LSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLH 130 (386)
T ss_dssp HHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECC
T ss_pred HHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECc
Confidence 3445778999999999998554 445544 689999999999998855 25654 8899999999999
Q ss_pred cCCCCCccccccCccccCCchhhHHHhccC---------cCcceeeEEEechh--hHHHhhccccccCceEEEEE-EeCC
Q 037371 71 SRGRWSVLEEEEGSVLCDDAEPLMKELLGL---------KHLNVLSWSFRSSL--AVQKFLKYPKLVSITQSVWV-ECGT 138 (330)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l-~~~~ 138 (330)
+|.+ +. . + ...+...+..+ ++|++|++++|.+. ....+......+.+|++|++ ++.-
T Consensus 131 ~n~l-~~---~-~------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 131 NNGL-GP---Q-A------GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp SSCC-HH---H-H------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCCC-CH---H-H------HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 9988 21 0 0 11233445455 89999999999874 45544444455678999999 4432
Q ss_pred CCCCC-----ccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------Ccc--cc
Q 037371 139 YTRPP-----FNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWL--VF 205 (330)
Q Consensus 139 ~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l--~~ 205 (330)
.. .....+..+++|+.|++++|.++....... +.....+++|++|+|++|.+... ..+ +.
T Consensus 200 ---~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l----~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 200 ---RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ---CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH----HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ---CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH----HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 21 122267889999999999887753211110 11135678999999999976653 344 34
Q ss_pred cCCccEEEEecccccc-----cccccccccccccccCcc-ccCcccceeeccccc
Q 037371 206 VQNLKQLNMQGFTMEE-----IISVDKLSDISEIIGSEH-NIFARLEYLTMWRGT 254 (330)
Q Consensus 206 l~~L~~L~L~~~~l~~-----~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 254 (330)
+++|+.|+|++|.+.. ++. .+ ..+++|++|+++++.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~-------------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKT-------------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHH-------------HHHHHCTTCCEEECTTSB
T ss_pred CCCeEEEECcCCcCCHHHHHHHHH-------------HHHhcCCCceEEEccCCc
Confidence 8999999999999887 322 33 568999999999984
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=139.94 Aligned_cols=205 Identities=15% Similarity=0.080 Sum_probs=149.0
Q ss_pred ccccccEeecCCCCCc-ccChhh--hcCcccceeccCCCCCCCCCc---hhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 12 NLVSLHHLDLSRTNIT-GLPQEL--KALEKLRYLNLDHTRFLSIIP---PQLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 12 ~l~~L~~L~L~~~~~~-~lp~~l--~~l~~L~~L~l~~~~~~~~~p---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
.+++|++|++++|.+. ..|..+ ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l----------- 157 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS----------- 157 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-----------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-----------
Confidence 3567999999999988 566666 889999999999998866544 22256899999999999988
Q ss_pred ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhcc--ccccCceEEEEE-EeCCCCCCCccc--c-ccccccCccEEE
Q 037371 86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKY--PKLVSITQSVWV-ECGTYTRPPFNV--L-HLAYMENLQELE 159 (330)
Q Consensus 86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l-~~~~~~~~~~~~--~-~l~~l~~L~~L~ 159 (330)
....+..++.+++|++|++++|.......+... .....+|++|++ ++.- ..... . .+..+++|++|+
T Consensus 158 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 158 ----PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM---ETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp ----CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC---CCHHHHHHHHHHHTCCCSSEE
T ss_pred ----chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC---CchHHHHHHHHhcCCCCCEEE
Confidence 445566788999999999999986543322211 134556888888 4322 22111 1 246889999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCcc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEH 239 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (330)
+++|.++...+... .....+++|++|++++|.++.++.-- .++|+.|+|++|.+.++ + ..
T Consensus 231 Ls~N~l~~~~p~~~-----~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~-~-------------~~ 290 (310)
T 4glp_A 231 LSHNSLRATVNPSA-----PRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA-P-------------QP 290 (310)
T ss_dssp CTTSCCCCCCCSCC-----SSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC-C-------------CT
T ss_pred CCCCCCCccchhhH-----HhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC-c-------------hh
Confidence 99888886633322 01122379999999999777765321 38999999999999877 3 45
Q ss_pred ccCcccceeeccccc
Q 037371 240 NIFARLEYLTMWRGT 254 (330)
Q Consensus 240 ~~~~~L~~L~l~~~~ 254 (330)
..+++|+.|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 678999999999873
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=1.7e-17 Score=154.65 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=129.2
Q ss_pred hhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCCCchhhhCCCC----CCcEEEeccCCCCCcccc
Q 037371 10 ISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFS----KLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~----~L~~L~l~~~~~~~~~~~ 80 (330)
+..+++|++|++++|++. .++..+..+++|++|++++|.+....+..+...+. +|++|++++|.+ +.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-~~--- 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TG--- 99 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-BG---
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC-CH---
Confidence 778899999999999988 56777888999999999999775444444344555 799999999988 21
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhcc-ccccCceEEEEE-EeCCCCCCCcc----ccccccc
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKY-PKLVSITQSVWV-ECGTYTRPPFN----VLHLAYM 152 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~-~~~~~~L~~L~l-~~~~~~~~~~~----~~~l~~l 152 (330)
.+ ....+..+..+++|++|++++|.+.. ...+... ......|++|++ ++.- .... ...+..+
T Consensus 100 -~~------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l---~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 100 -AG------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL---SAASCEPLASVLRAK 169 (461)
T ss_dssp -GG------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC---BGGGHHHHHHHHHHC
T ss_pred -HH------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC---CHHHHHHHHHHHhhC
Confidence 00 13567888999999999999988653 2222221 122346899998 5432 2222 2345677
Q ss_pred cCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc------cCcccccCCccEEEEeccccccc
Q 037371 153 ENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD------LTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
++|++|+++++.+++........ ......++|++|++++|.+.. ...+..+++|++|+++++.+.+.
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQ---GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHH---HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHH---HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 89999999977666432221100 000124567777777775544 22455677777777777666554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.4e-15 Score=137.02 Aligned_cols=209 Identities=15% Similarity=0.177 Sum_probs=144.4
Q ss_pred CCCccCChh-hhccccccEeecCCCCCc-ccCh-hhhcCccccee-ccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCC
Q 037371 1 LSLSKLPSG-ISNLVSLHHLDLSRTNIT-GLPQ-ELKALEKLRYL-NLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWS 76 (330)
Q Consensus 1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~-~lp~-~l~~l~~L~~L-~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 76 (330)
|.++++|.. |+++++|++|+|++|.+. .+|. .+.++++++.+ .+++|.+ ..+++.++..+++|++|++++|++ .
T Consensus 40 N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l-~~l~~~~f~~l~~L~~L~l~~n~l-~ 117 (350)
T 4ay9_X 40 TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGI-K 117 (350)
T ss_dssp CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC-CEECTTSBCCCTTCCEEEEEEECC-S
T ss_pred CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc-cccCchhhhhcccccccccccccc-c
Confidence 678999974 899999999999999986 5665 56789988764 4555656 666655699999999999999988 2
Q ss_pred ccccccCccccCCchhhHHHhccCcCcceeeEEEec-hhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCc
Q 037371 77 VLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS-SLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENL 155 (330)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 155 (330)
. ..........++..|.+..+. +..+.. .........++.|+++.+. ..... .......+|
T Consensus 118 ~--------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~--i~~i~-~~~f~~~~L 179 (350)
T 4ay9_X 118 H--------------LPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNG--IQEIH-NSAFNGTQL 179 (350)
T ss_dssp S--------------CCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSC--CCEEC-TTSSTTEEE
T ss_pred c--------------CCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhcccccc--ccCCC-hhhccccch
Confidence 2 222233455566677776532 222111 0111223457777773333 23222 233345689
Q ss_pred cEEEEE-ccCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEec-ccccccccccccccccc
Q 037371 156 QELELG-SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQG-FTMEEIISVDKLSDISE 233 (330)
Q Consensus 156 ~~L~l~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~-~~l~~~~~~~~~~~~~~ 233 (330)
++|++. ++.++.+..+.+ ..+++|++|++++|.++.++. ..+.+|+.|.+.+ +.++.+ +
T Consensus 180 ~~l~l~~~n~l~~i~~~~f--------~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~l-P--------- 240 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVF--------HGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKL-P--------- 240 (350)
T ss_dssp EEEECTTCTTCCCCCTTTT--------TTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCC-C---------
T ss_pred hHHhhccCCcccCCCHHHh--------ccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcC-C---------
Confidence 999998 788887755443 678999999999998887764 3477888888877 667666 2
Q ss_pred cccCccccCcccceeeccc
Q 037371 234 IIGSEHNIFARLEYLTMWR 252 (330)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~ 252 (330)
.+..|++|+.+++.+
T Consensus 241 ----~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTY 255 (350)
T ss_dssp ----CTTTCCSCCEEECSC
T ss_pred ----CchhCcChhhCcCCC
Confidence 567899999999874
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1.3e-15 Score=133.63 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=128.6
Q ss_pred ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL 93 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (330)
..+..+.+..+.+..+. .+..+++|+.|++++|.+ ..++. +..+++|++|++++|.+ ....
T Consensus 24 ~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i-~~~~~--~~~l~~L~~L~L~~n~l---------------~~~~ 84 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL---------------TDIK 84 (291)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC---------------CCCG
T ss_pred HHHHHHHhcCCCccccc-chhhcCcccEEEccCCCc-ccChh--HhcCCCCCEEEccCCcc---------------CCCc
Confidence 34455567777666542 356899999999999976 56665 88999999999999988 2222
Q ss_pred HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371 94 MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS 172 (330)
Q Consensus 94 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 172 (330)
+ +..+++|+.|++++|.+..+..+ ..+.+|+.|++ ++.- .. ...+..+++|+.|++++|.++.+ .
T Consensus 85 ~--l~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~L~~n~i---~~--~~~l~~l~~L~~L~l~~n~l~~~--~- 150 (291)
T 1h6t_A 85 P--LANLKNLGWLFLDENKVKDLSSL----KDLKKLKSLSLEHNGI---SD--INGLVHLPQLESLYLGNNKITDI--T- 150 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCCGGGG----TTCTTCCEEECTTSCC---CC--CGGGGGCTTCCEEECCSSCCCCC--G-
T ss_pred c--cccCCCCCEEECCCCcCCCChhh----ccCCCCCEEECCCCcC---CC--ChhhcCCCCCCEEEccCCcCCcc--h-
Confidence 2 88999999999999876654432 33456777777 3322 22 24566777777777776666644 1
Q ss_pred ccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371 173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (330)
....+++|++|++++|.+..++.+..+++|+.|++++|.+.++ + .+..+++|+.|++++
T Consensus 151 -------~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l-~-------------~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 151 -------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFS 209 (291)
T ss_dssp -------GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEEEEE
T ss_pred -------hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC-h-------------hhccCCCCCEEECcC
Confidence 1245677777777777666665577777777777777777665 2 455677777777776
Q ss_pred c
Q 037371 253 G 253 (330)
Q Consensus 253 ~ 253 (330)
+
T Consensus 210 n 210 (291)
T 1h6t_A 210 Q 210 (291)
T ss_dssp E
T ss_pred C
Confidence 6
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.3e-15 Score=130.02 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=104.9
Q ss_pred ccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371 12 NLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE 91 (330)
Q Consensus 12 ~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 91 (330)
.+.++..++++++.+..++ .+..+++|++|++++|.+ ..++. +..+++|++|++++|.+ ..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~L~~N~i---------------~~ 77 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAG--MQFFTNLKELHLSHNQI---------------SD 77 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTT--GGGCTTCCEEECCSSCC---------------CC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchH--HhhCCCCCEEECCCCcc---------------CC
Confidence 4556677778887777776 567788888888888765 55663 77788888888888777 21
Q ss_pred hhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371 92 PLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170 (330)
Q Consensus 92 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 170 (330)
..+ +..+++|+.|++++|.+..+..+. . .+|+.|++ ++.- .. ...+..+++|+.|++++|+++.+.
T Consensus 78 ~~~--l~~l~~L~~L~L~~N~l~~l~~~~---~--~~L~~L~L~~N~l---~~--~~~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 78 LSP--LKDLTKLEELSVNRNRLKNLNGIP---S--ACLSRLFLDNNEL---RD--TDSLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp CGG--GTTCSSCCEEECCSSCCSCCTTCC---C--SSCCEEECCSSCC---SB--SGGGTTCTTCCEEECTTSCCCBCG-
T ss_pred Chh--hccCCCCCEEECCCCccCCcCccc---c--CcccEEEccCCcc---CC--ChhhcCcccccEEECCCCcCCCCh-
Confidence 112 777788888888777654432211 1 44555555 2211 11 124566666666666666665431
Q ss_pred CcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEeccccccc
Q 037371 171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
....+++|++|++++|.+..+..+..+++|+.|++++|.+...
T Consensus 145 ---------~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 ---------MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---------GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred ---------HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 1244566666666666555555566666666666666655444
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.60 E-value=4.5e-16 Score=149.58 Aligned_cols=235 Identities=15% Similarity=0.078 Sum_probs=122.3
Q ss_pred ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL 93 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (330)
++|+.|+++++....+|..+..+++|++|++++|.+.......++..+++|++|++.++.. ....
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~---------------~~~l 334 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG---------------DRGL 334 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH---------------HHHH
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC---------------HHHH
Confidence 3333333333333344555555666666666666532222222345666666666653211 2223
Q ss_pred HHHhccCcCcceeeEEE-----------echhhHHHhhccccccCceEEEEEEeCCCCCCCcccccccc-ccCccEEEEE
Q 037371 94 MKELLGLKHLNVLSWSF-----------RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAY-MENLQELELG 161 (330)
Q Consensus 94 ~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~ 161 (330)
......+++|++|++.+ +.... ..+......+++|++|++.+.. ........+.. +++|+.|+++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~--l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD--ITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC--CCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC--ccHHHHHHHHhhCCCCcEEEEe
Confidence 33334566666666662 22211 1111112234556666664444 33333334443 6667777775
Q ss_pred ----ccCcceeeeCcccccCccCCCCCCCccEEEEecc-c-ccc--cCccc-ccCCccEEEEeccccccccccccccccc
Q 037371 162 ----SSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSC-R-GKD--LTWLV-FVQNLKQLNMQGFTMEEIISVDKLSDIS 232 (330)
Q Consensus 162 ----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~-~~~--l~~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 232 (330)
++.++....+.. .......+++|++|++++| + +.+ +..+. .+++|+.|+|+++.+.+....
T Consensus 412 ~~~~~n~l~~~p~~~~---~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~------- 481 (592)
T 3ogk_B 412 LLDREERITDLPLDNG---VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM------- 481 (592)
T ss_dssp ECSCCSCCSSCCCHHH---HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH-------
T ss_pred ecCCCccccCchHHHH---HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH-------
Confidence 444443211100 0000134778888888766 2 333 22333 478899999988777653221
Q ss_pred ccccCccccCcccceeecccccccccc--cCCCCCCCCccEEEEccCCCCCC
Q 037371 233 EIIGSEHNIFARLEYLTMWRGTNVKSV--YPNPLPFPKLKKIQVFHCRQLKK 282 (330)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~~~L~~L~i~~c~~L~~ 282 (330)
.....+++|++|++++|. +... ......+++|+.|++++|. ++.
T Consensus 482 ----~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 ----EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ----HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ----HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 134668999999999996 4432 2112348999999999986 544
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.8e-15 Score=125.93 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred cccEeecCCCCCcccChh-hhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 15 SLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
+|++|++++|.+..+|.. +..+++|++|++++|.+ ..+|..++..+++|++|++++|.+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCcC
Confidence 555555555555544432 34555555555555544 233333344555555555555544
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.5e-15 Score=131.29 Aligned_cols=166 Identities=13% Similarity=0.139 Sum_probs=108.0
Q ss_pred cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 35 ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 35 ~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
.+.++..++++.+.+ ..++. +.++++|++|++++|.+ +. .+ .+..+++|+.|++++|.+.
T Consensus 17 ~l~~l~~l~l~~~~i-~~~~~--~~~l~~L~~L~l~~n~i-~~---------------l~-~l~~l~~L~~L~L~~N~i~ 76 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-TDLVS--QKELSGVQNFNGDNSNI-QS---------------LA-GMQFFTNLKELHLSHNQIS 76 (263)
T ss_dssp HHHHHHHHHHTCSCT-TSEEC--HHHHTTCSEEECTTSCC-CC---------------CT-TGGGCTTCCEEECCSSCCC
T ss_pred HHHHHHHHHhcCCCc-ccccc--hhhcCcCcEEECcCCCc-cc---------------ch-HHhhCCCCCEEECCCCccC
Confidence 577788899998866 56663 78999999999999988 21 22 6888999999999988765
Q ss_pred hHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEec
Q 037371 115 AVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRS 194 (330)
Q Consensus 115 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 194 (330)
.+.. ...+..|+.|++..+. .... ..+.. ++|+.|++++|.++.+. ....+++|++|++++
T Consensus 77 ~~~~----l~~l~~L~~L~L~~N~--l~~l--~~~~~-~~L~~L~L~~N~l~~~~----------~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 77 DLSP----LKDLTKLEELSVNRNR--LKNL--NGIPS-ACLSRLFLDNNELRDTD----------SLIHLKNLEILSIRN 137 (263)
T ss_dssp CCGG----GTTCSSCCEEECCSSC--CSCC--TTCCC-SSCCEEECCSSCCSBSG----------GGTTCTTCCEEECTT
T ss_pred CChh----hccCCCCCEEECCCCc--cCCc--Ccccc-CcccEEEccCCccCCCh----------hhcCcccccEEECCC
Confidence 5433 2234556666662211 1111 11222 66777777766665431 124566677777777
Q ss_pred ccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371 195 CRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 195 ~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (330)
|.++.++.+..+++|+.|++++|.+.++ . .+..+++|+.|+++++
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~-------------~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT-G-------------GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC-T-------------TSTTCCCCCEEEEEEE
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch-H-------------HhccCCCCCEEeCCCC
Confidence 7666666666677777777777666655 2 4556667777776665
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=3.7e-15 Score=123.05 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=98.6
Q ss_pred hcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 34 KALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 34 ~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
..+++|++|++++|.+ ..+| . +..+++|++|++++|.+ ..+..+..+++|++|++++|.+
T Consensus 41 ~~l~~L~~L~l~~n~i-~~l~-~-l~~l~~L~~L~l~~n~~-----------------~~~~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-TDLT-G-IEYAHNIKDLTINNIHA-----------------TNYNPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHTCCEEEEESSCC-SCCT-T-GGGCTTCSEEEEESCCC-----------------SCCGGGTTCTTCCEEEEECTTC
T ss_pred hhcCCccEEeccCCCc-cChH-H-HhcCCCCCEEEccCCCC-----------------CcchhhhcCCCCCEEEeECCcc
Confidence 5677777777777765 4556 3 67777777777777755 1122566677777777766542
Q ss_pred hhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe
Q 037371 114 LAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR 193 (330)
Q Consensus 114 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 193 (330)
. ......+..+++|++|++++|.++...+.. ...+++|++|+++
T Consensus 101 ~----------------------------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--------l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 101 T----------------------------SDKIPNLSGLTSLTLLDISHSAHDDSILTK--------INTLPKVNSIDLS 144 (197)
T ss_dssp B----------------------------GGGSCCCTTCTTCCEEECCSSBCBGGGHHH--------HTTCSSCCEEECC
T ss_pred C----------------------------cccChhhcCCCCCCEEEecCCccCcHhHHH--------HhhCCCCCEEEcc
Confidence 2 122334667778888888876666432222 2567778888888
Q ss_pred ccc-ccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccc
Q 037371 194 SCR-GKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRG 253 (330)
Q Consensus 194 ~~~-~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 253 (330)
+|. +.+++.+..+++|+.|++++|.+.++. .+..+++|+.|++.++
T Consensus 145 ~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--------------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 145 YNGAITDIMPLKTLPELKSLNIQFDGVHDYR--------------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--------------TGGGCSSCCEEEECBC
T ss_pred CCCCccccHhhcCCCCCCEEECCCCCCcChH--------------HhccCCCCCEEEeeCc
Confidence 884 777777777888888888877776652 4556677777777765
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=3.1e-15 Score=143.71 Aligned_cols=187 Identities=16% Similarity=0.178 Sum_probs=145.1
Q ss_pred ccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhh
Q 037371 14 VSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPL 93 (330)
Q Consensus 14 ~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (330)
..+..+.+..+.+..++ .+..+.+|+.|++++|.+ ..++. +..+++|+.|++++|.+ ....
T Consensus 21 ~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i-~~l~~--l~~l~~L~~L~Ls~N~l---------------~~~~ 81 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQG--IQYLPNVTKLFLNGNKL---------------TDIK 81 (605)
T ss_dssp HHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCC-CCCTT--GGGCTTCCEEECTTSCC---------------CCCG
T ss_pred HHHHHHhccCCCccccc-chhcCCCCCEEECcCCCC-CCChH--HccCCCCCEEEeeCCCC---------------CCCh
Confidence 44566677777777553 357899999999999976 66664 88999999999999988 2222
Q ss_pred HHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccCcceeeeCc
Q 037371 94 MKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDS 172 (330)
Q Consensus 94 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 172 (330)
+ +..+++|+.|++++|.+..+.. ...+.+|+.|++ ++.. .. ...+..+++|+.|+++.|.++.+ .
T Consensus 82 ~--l~~l~~L~~L~Ls~N~l~~l~~----l~~l~~L~~L~Ls~N~l---~~--l~~l~~l~~L~~L~Ls~N~l~~l--~- 147 (605)
T 1m9s_A 82 P--LTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGI---SD--INGLVHLPQLESLYLGNNKITDI--T- 147 (605)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCTT----STTCTTCCEEECTTSCC---CC--CGGGGGCTTCSEEECCSSCCCCC--G-
T ss_pred h--hccCCCCCEEECcCCCCCCChh----hccCCCCCEEEecCCCC---CC--CccccCCCccCEEECCCCccCCc--h-
Confidence 2 8899999999999998765442 344667888888 4332 22 34688899999999998887754 1
Q ss_pred ccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccc
Q 037371 173 TEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWR 252 (330)
Q Consensus 173 ~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 252 (330)
....+++|+.|+|++|.+..+..+..+++|+.|+|++|.+.++ + .+..+++|+.|++++
T Consensus 148 -------~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~-------------~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 148 -------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R-------------ALAGLKNLDVLELFS 206 (605)
T ss_dssp -------GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G-------------GGTTCTTCSEEECCS
T ss_pred -------hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-h-------------HHccCCCCCEEEccC
Confidence 2357889999999999887776688999999999999988876 3 567789999999998
Q ss_pred cc
Q 037371 253 GT 254 (330)
Q Consensus 253 ~~ 254 (330)
++
T Consensus 207 N~ 208 (605)
T 1m9s_A 207 QE 208 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 73
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=1.1e-15 Score=138.21 Aligned_cols=231 Identities=11% Similarity=0.066 Sum_probs=150.4
Q ss_pred CCCccCC-----hhhhccc-cccEeecCCCCCccc-ChhhhcC-----cccceeccCCCCCCCCCchh---hhCCC-CCC
Q 037371 1 LSLSKLP-----SGISNLV-SLHHLDLSRTNITGL-PQELKAL-----EKLRYLNLDHTRFLSIIPPQ---LISGF-SKL 64 (330)
Q Consensus 1 ~~l~~lp-----~~l~~l~-~L~~L~L~~~~~~~l-p~~l~~l-----~~L~~L~l~~~~~~~~~p~~---~~~~l-~~L 64 (330)
|.+...+ +.+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+....+.. ++..+ ++|
T Consensus 32 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L 111 (362)
T 3goz_A 32 NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111 (362)
T ss_dssp SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc
Confidence 3455555 5678888 999999999999854 4456554 99999999999875555543 13444 899
Q ss_pred cEEEeccCCCCCccccccCccccCCchhhHHHhccC-cCcceeeEEEechhh--HHHhhcccccc-CceEEEEE-EeCCC
Q 037371 65 EVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGL-KHLNVLSWSFRSSLA--VQKFLKYPKLV-SITQSVWV-ECGTY 139 (330)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l-~~~~~ 139 (330)
++|++++|.+ +. . ....+...+..+ ++|++|++++|.+.. ...+....... ..|++|++ ++.-
T Consensus 112 ~~L~Ls~N~l-~~---~-------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l- 179 (362)
T 3goz_A 112 TVLDLGWNDF-SS---K-------SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL- 179 (362)
T ss_dssp CEEECCSSCG-GG---S-------CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-
T ss_pred cEEECcCCcC-Cc---H-------HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-
Confidence 9999999998 22 0 022233445553 699999999997753 22332222222 37999999 4432
Q ss_pred CCCCcccc----ccccc-cCccEEEEEccCcceeeeCcccccCccCCCC-CCCccEEEEecccccccC------cccccC
Q 037371 140 TRPPFNVL----HLAYM-ENLQELELGSSKLEEMKIDSTEEVKKLFRNG-FRSLNTVVLRSCRGKDLT------WLVFVQ 207 (330)
Q Consensus 140 ~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~l~------~l~~l~ 207 (330)
...... .+... ++|+.|++++|.+++...... ...... .++|++|+|++|.+.+.. .+..++
T Consensus 180 --~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l----~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 180 --ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL----AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp --GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH----HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred --chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH----HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 222222 34455 599999999888875322211 000112 368999999999776643 346789
Q ss_pred CccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371 208 NLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 208 ~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
+|+.|++++|.+..+..... ..+. ..+..+++|+.|+++++.
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~-~~l~----~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQC-KALG----AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHH-HHHH----TTSTTCCEEEEECTTSCB
T ss_pred CccEEEeccCCccccCHHHH-HHHH----HHhccCCceEEEecCCCc
Confidence 99999999988555533100 0011 155678889999998873
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1.1e-14 Score=122.27 Aligned_cols=155 Identities=18% Similarity=0.258 Sum_probs=102.8
Q ss_pred hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
+.|. -+.++.++++++.+|..+. ++|+.|++++|.+ ..++...+..+++|++|++++|.+ .
T Consensus 9 C~C~-~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i-~~i~~~~~~~l~~L~~L~Ls~N~i---------------~ 69 (220)
T 2v9t_B 9 CTCS-NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQI---------------S 69 (220)
T ss_dssp SEEE-TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCC-CEECTTSSTTCTTCCEEECCSSCC---------------C
T ss_pred CEEC-CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcC-CCcCHhHhhCCCCCCEEECCCCcC---------------C
Confidence 4443 3677888888888877554 5788888888866 455544477888888888888877 3
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 170 (330)
...+..+..+++|+.|++++|.+.. .....+..+++|+.|+++.|.++.+.+
T Consensus 70 ~~~~~~~~~l~~L~~L~Ls~N~l~~----------------------------l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 70 ELAPDAFQGLRSLNSLVLYGNKITE----------------------------LPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp EECTTTTTTCSSCCEEECCSSCCCC----------------------------CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCHHHhhCCcCCCEEECCCCcCCc----------------------------cCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 3445667778888888877665321 112235666777777777766665543
Q ss_pred CcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371 171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME 220 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~ 220 (330)
..+ ..+++|++|+|++|.+..++ .+..+++|+.|+|++|.+.
T Consensus 122 ~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAF--------QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTT--------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHc--------CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 332 55677777777777655544 3666777777777776654
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1.7e-14 Score=121.20 Aligned_cols=145 Identities=20% Similarity=0.279 Sum_probs=108.9
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
+++.++|..+. ++|++|++++|.+..+|. .+..+++|++|++++|.+....|.. +.++++|++|++++|.+
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l----- 92 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKI----- 92 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSCC-----
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCcC-----
Confidence 45778887765 689999999999987766 6788999999999999875444554 88999999999999888
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.......+..+++|+.|++++|.+. ......+..+++|+.|+
T Consensus 93 ----------~~l~~~~f~~l~~L~~L~L~~N~l~----------------------------~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 93 ----------TELPKSLFEGLFSLQLLLLNANKIN----------------------------CLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEE
T ss_pred ----------CccCHhHccCCCCCCEEECCCCCCC----------------------------EeCHHHcCCCCCCCEEE
Confidence 2223334677888888888776522 22234577888999999
Q ss_pred EEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371 160 LGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD 199 (330)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 199 (330)
++.|.++.+....+ ..+++|++|++++|.+..
T Consensus 135 L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 135 LYDNKLQTIAKGTF--------SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCSCCCTTTT--------TTCTTCCEEECCSSCEEC
T ss_pred CCCCcCCEECHHHH--------hCCCCCCEEEeCCCCcCC
Confidence 99888886654433 567889999999985543
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=1.1e-16 Score=149.13 Aligned_cols=260 Identities=17% Similarity=0.143 Sum_probs=145.8
Q ss_pred cCChhhhccccccEeecCCCCCcc-cChhh-hcCc----ccceeccCCCCCCC----CCchhhhCCCCCCcEEEeccCCC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNITG-LPQEL-KALE----KLRYLNLDHTRFLS----IIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~~-lp~~l-~~l~----~L~~L~l~~~~~~~----~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
.+|..+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.+.. .++.. +..+++|++|++++|.+
T Consensus 47 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 47 DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBC
T ss_pred HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcC
Confidence 445567777788888888877662 22222 3344 57777777776542 23443 67777777777777765
Q ss_pred CCcc----------------ccccCc---cccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhccc-cccCceEEE
Q 037371 75 WSVL----------------EEEEGS---VLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYP-KLVSITQSV 132 (330)
Q Consensus 75 ~~~~----------------~~~~~~---~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~-~~~~~L~~L 132 (330)
+.. +.+.-+ ........++..+..+++|++|++++|.+.. ...+.... .....|++|
T Consensus 126 -~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 126 -GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp -HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred -chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 110 000000 0000011234556666777777777776533 12222111 113357777
Q ss_pred EE-EeCCCCCCCc----cccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc-----c-C
Q 037371 133 WV-ECGTYTRPPF----NVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD-----L-T 201 (330)
Q Consensus 133 ~l-~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-----l-~ 201 (330)
++ ++.- ... ....+..+++|++|+++++.+++...... .......+++|++|++++|.++. + .
T Consensus 205 ~L~~n~l---~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l---~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 205 KLESCGV---TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL---CPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp ECTTSCC---BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH---HHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred EccCCCC---cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH---HHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 77 4432 221 12345677888888888666654322111 01112347889999999996655 2 2
Q ss_pred cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccccccccc-----CCCCCCCCccEEEEcc
Q 037371 202 WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVY-----PNPLPFPKLKKIQVFH 276 (330)
Q Consensus 202 ~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-----~~~~~~~~L~~L~i~~ 276 (330)
.+..+++|++|++++|.+.+.+...... ......++|++|++++|. +.... .....+++|++|++++
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCE-------TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHH-------HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHH-------HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence 4667899999999988876553310000 012234699999999884 44321 1122368999999999
Q ss_pred CCCCC
Q 037371 277 CRQLK 281 (330)
Q Consensus 277 c~~L~ 281 (330)
| .+.
T Consensus 351 n-~i~ 354 (461)
T 1z7x_W 351 N-RLE 354 (461)
T ss_dssp S-BCH
T ss_pred C-ccc
Confidence 7 444
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.2e-14 Score=119.33 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=94.9
Q ss_pred ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
-+.++.+++++..+|..+ .++|++|++++|.+ ..++..+++++++|++|++++|.+ ......
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~~ 70 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKL---------------QSLPNG 70 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC---------------CCCCTT
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCcc-CcCChhhhcccccCcEEECCCCcc---------------CccChh
Confidence 467888888888888755 46899999999987 456655588999999999999888 222333
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
.+..+++|++|++++|.+. ......+..+++|++|+++.|.++.+....
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--- 119 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQ----------------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGV--- 119 (208)
T ss_dssp TTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT---
T ss_pred hcCCCCCcCEEECCCCcCC----------------------------ccCHhHhcCccCCCEEEcCCCcCcccCHhH---
Confidence 4567777777777765422 111223455666666666655555432221
Q ss_pred cCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFT 218 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~ 218 (330)
...+++|++|++++|.+..++ .+..+++|+.|++++|.
T Consensus 120 -----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 120 -----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp -----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 234556666666666444433 24556666666666553
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=1.5e-14 Score=130.81 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=83.6
Q ss_pred cEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhC-CCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLIS-GFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 17 ~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
++++++++++..+|..+. ..++.|++++|.+ ..++...+. ++++|++|++++|.+ ....+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l-~~l~~~~~~~~l~~L~~L~L~~N~i---------------~~i~~~ 82 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHL---------------NFISSE 82 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCC-CEECTTSSSSCCTTCCEEECCSSCC---------------CEECTT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCC-CccChhhhhhcccccCEEECCCCcC---------------CccChh
Confidence 567777777777776443 3467777777765 444443355 677777777777766 223334
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
.+..+++|+.|++++|.+..+ ....+..+++|+.|+++.|.++.+.+..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-- 132 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTL----------------------------DEFLFSDLQALEVLLLYNNHIVVVDRNAF-- 132 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEE----------------------------CTTTTTTCTTCCEEECCSSCCCEECTTTT--
T ss_pred hccCCCCCCEEECCCCcCCcC----------------------------CHHHhCCCcCCCEEECCCCcccEECHHHh--
Confidence 566677777777766543211 11234455555555555555554432222
Q ss_pred cCccCCCCCCCccEEEEecccccccCc--c---cccCCccEEEEecccccccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKDLTW--L---VFVQNLKQLNMQGFTMEEII 223 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~l~~--l---~~l~~L~~L~L~~~~l~~~~ 223 (330)
..+++|++|+|++|.+..++. + ..+++|+.|+|++|.+..++
T Consensus 133 ------~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 133 ------EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp ------TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred ------CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 445555555555554444331 2 34555555555555555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=1e-14 Score=131.82 Aligned_cols=169 Identities=22% Similarity=0.205 Sum_probs=125.3
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChh-hh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQE-LK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
+++.++|..+. ..+++|+|++|.++.++.. +. .+++|++|++++|.+ ..++...+.++++|++|++++|.+
T Consensus 28 ~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l---- 100 (361)
T 2xot_A 28 QQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHL---- 100 (361)
T ss_dssp SCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCC----
T ss_pred CCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCcC----
Confidence 46788998776 4689999999999988765 45 899999999999987 555554599999999999999998
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.......+..+++|+.|++++|.+. ......+..+++|+.|
T Consensus 101 -----------~~~~~~~~~~l~~L~~L~L~~N~i~----------------------------~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 101 -----------HTLDEFLFSDLQALEVLLLYNNHIV----------------------------VVDRNAFEDMAQLQKL 141 (361)
T ss_dssp -----------CEECTTTTTTCTTCCEEECCSSCCC----------------------------EECTTTTTTCTTCCEE
T ss_pred -----------CcCCHHHhCCCcCCCEEECCCCccc----------------------------EECHHHhCCcccCCEE
Confidence 3344456788999999999877532 1122456778888888
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCC--ccEEEEeccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQN--LKQLNMQGFTME 220 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~--L~~L~L~~~~l~ 220 (330)
++++|.++.+....+. ....+++|+.|+|++|.+..++ .+..+++ |+.|+|++|.+.
T Consensus 142 ~L~~N~l~~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIK-----DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC---------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhc-----CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888888765433220 0135788899999888777665 4666776 478888887654
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=4.1e-14 Score=119.57 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=75.4
Q ss_pred ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
...++.+++++..+|..+. ++|++|++++|.+.+..|.. +..+++|++|++++|.+ ......
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l---------------~~i~~~ 82 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQL---------------GALPVG 82 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCC---------------CCCCTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCC---------------CCcChh
Confidence 3455666666666655432 55666666666554333332 55666666666666655 112223
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
.+..+++|+.|++++|.+. ......+..+++|+.|++++|.++.+...
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~----------------------------~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~---- 130 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLT----------------------------VLPSAVFDRLVHLKELFMCCNKLTELPRG---- 130 (229)
T ss_dssp TTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCCSCCTT----
T ss_pred hcccCCCcCEEECCCCcCC----------------------------ccChhHhCcchhhCeEeccCCcccccCcc----
Confidence 3455566666665554321 11112244555555555555555433111
Q ss_pred cCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTME 220 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~ 220 (330)
...+++|++|++++|.+..++ .+..+++|+.|++++|.+.
T Consensus 131 -----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 131 -----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred -----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 134555566666555444433 2455566666666655443
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=3e-14 Score=119.69 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=107.4
Q ss_pred hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
+.|. -++++++++.++.+|..+. ..+++|++++|.+.+..+..++.++++|++|++++|.+ .
T Consensus 9 C~C~-~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i---------------~ 70 (220)
T 2v70_A 9 CRCE-GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---------------T 70 (220)
T ss_dssp CEEE-TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---------------C
T ss_pred CEEC-CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---------------C
Confidence 4443 3688888888888887553 34678888888774443544577888888888888887 3
Q ss_pred hhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeee
Q 037371 91 EPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKI 170 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 170 (330)
...+..+..+++|++|++++|.+. ......+..+++|++|+++.|.++.+.+
T Consensus 71 ~i~~~~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 71 DIEEGAFEGASGVNEILLTSNRLE----------------------------NVQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCC----------------------------CCCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred EECHHHhCCCCCCCEEECCCCccC----------------------------ccCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 334456777888888888766522 2222346677788888888777775543
Q ss_pred CcccccCccCCCCCCCccEEEEeccccccc--CcccccCCccEEEEecccccc
Q 037371 171 DSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLKQLNMQGFTMEE 221 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L~L~~~~l~~ 221 (330)
..+ ..+++|++|+|++|.+..+ ..+..+++|+.|+|++|.+..
T Consensus 123 ~~~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 123 DSF--------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSS--------TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred hHc--------CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 332 5677788888888866554 357778888888888876653
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=2.1e-14 Score=136.75 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=116.6
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
+|++|++++|+++.+|..+ +++|++|++++|.+ ..+| ..+++|++|++++|.+ +. ++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-~~ip----~~l~~L~~L~Ls~N~l-~~---------------ip 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-ISLP----ELPASLEYLDACDNRL-ST---------------LP 116 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-SCCC----CCCTTCCEEECCSSCC-SC---------------CC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-cccc----cccCCCCEEEccCCCC-CC---------------cc
Confidence 8999999999988888866 37899999999977 4677 3478899999999888 21 22
Q ss_pred HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371 95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE 174 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 174 (330)
. +.. +|+.|++++|.+..++. .+.+|+.|++..+. .... .. .+++|+.|++++|.++.+.. +
T Consensus 117 ~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~--l~~l--p~--~l~~L~~L~Ls~N~L~~lp~--l- 178 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQ--LTML--PE--LPTSLEVLSVRNNQLTFLPE--L- 178 (571)
T ss_dssp C-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSC--CSCC--CC--CCTTCCEEECCSSCCSCCCC--C-
T ss_pred h-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCc--cCcC--CC--cCCCcCEEECCCCCCCCcch--h-
Confidence 2 333 88888888887654332 34567777772222 1221 11 45677788877777665321 1
Q ss_pred ccCccCCCCCCCccEEEEecccccccCcccccCCc-------cEEEEecccccccccccccccccccccCccccCcccce
Q 037371 175 EVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNL-------KQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEY 247 (330)
Q Consensus 175 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L-------~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 247 (330)
. ++|+.|+|++|.++.++.+.. +| +.|+|++|.+..++. .+..+++|+.
T Consensus 179 -------~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-------------~l~~l~~L~~ 234 (571)
T 3cvr_A 179 -------P--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE-------------NILSLDPTCT 234 (571)
T ss_dssp -------C--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG-------------GGGGSCTTEE
T ss_pred -------h--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH-------------HHhcCCCCCE
Confidence 1 677788887776666555332 55 777887777776644 4445777777
Q ss_pred eeccccc
Q 037371 248 LTMWRGT 254 (330)
Q Consensus 248 L~l~~~~ 254 (330)
|++++++
T Consensus 235 L~L~~N~ 241 (571)
T 3cvr_A 235 IILEDNP 241 (571)
T ss_dssp EECCSSS
T ss_pred EEeeCCc
Confidence 7777763
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=119.38 Aligned_cols=145 Identities=20% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccCh--hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQ--ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~--~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.++++|..+. ..+++|++++|.++.++. .+..+++|++|++++|.+ ..++...+.++++|++|++++|.+
T Consensus 21 n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~l---- 93 (220)
T 2v70_A 21 QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRL---- 93 (220)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCC----
T ss_pred CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHHHhCCCCCCCEEECCCCcc----
Confidence 46778887765 356899999998887632 478899999999999877 445544488899999999999888
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
....+..+..+++|++|++++|.+ .......+..+++|+.|
T Consensus 94 -----------~~~~~~~~~~l~~L~~L~Ls~N~l----------------------------~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 94 -----------ENVQHKMFKGLESLKTLMLRSNRI----------------------------TCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp -----------CCCCGGGGTTCSSCCEEECTTSCC----------------------------CCBCTTSSTTCTTCSEE
T ss_pred -----------CccCHhHhcCCcCCCEEECCCCcC----------------------------CeECHhHcCCCccCCEE
Confidence 334455677888888888776642 22223456788889999
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD 199 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 199 (330)
+++.|.++.+.+..+ ..+++|++|++++|.+..
T Consensus 135 ~L~~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 135 SLYDNQITTVAPGAF--------DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTTT--------TTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCEECHHHh--------cCCCCCCEEEecCcCCcC
Confidence 999888886654443 567889999999885543
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=2.4e-14 Score=137.52 Aligned_cols=231 Identities=14% Similarity=0.075 Sum_probs=136.2
Q ss_pred hhccccccEeecCCCCCcccChhhhcCcccceeccCCCCC--------------------------CCCCchhhhCCCCC
Q 037371 10 ISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRF--------------------------LSIIPPQLISGFSK 63 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~--------------------------~~~~p~~~~~~l~~ 63 (330)
+.++++|++|++++|.+..+|..+..+++|++|+++.... ...+|. ++..+++
T Consensus 216 ~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~ 294 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQ 294 (592)
T ss_dssp HHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGG
T ss_pred HhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCC
Confidence 4455566666666655555555555555555555542110 122333 2556677
Q ss_pred CcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEE--------
Q 037371 64 LEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVE-------- 135 (330)
Q Consensus 64 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-------- 135 (330)
|++|++++|.+ + .......+..+++|++|++.. .... ..+......+.+|++|++.
T Consensus 295 L~~L~Ls~~~l-~-------------~~~~~~~~~~~~~L~~L~L~~-~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 295 IRKLDLLYALL-E-------------TEDHCTLIQKCPNLEVLETRN-VIGD-RGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp CCEEEETTCCC-C-------------HHHHHHHHTTCTTCCEEEEEG-GGHH-HHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred CcEEecCCCcC-C-------------HHHHHHHHHhCcCCCEEeccC-ccCH-HHHHHHHHhCCCCCEEEeecCcccccc
Confidence 77777777765 1 223335577888899888883 2221 2222222346678999984
Q ss_pred ---eCCCCCCCccccc-cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEec---c-cccccC------
Q 037371 136 ---CGTYTRPPFNVLH-LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRS---C-RGKDLT------ 201 (330)
Q Consensus 136 ---~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~---~-~~~~l~------ 201 (330)
|.. ........ ...+++|++|+++++.++....... ...+++|++|++.+ | .+++.+
T Consensus 359 ~~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-------~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 359 EDEEGL--VSQRGLIALAQGCQELEYMAVYVSDITNESLESI-------GTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp SSTTCC--CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-------HHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ccccCc--cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-------HhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 444 23222222 4568899999998887765433222 12377899999974 3 555421
Q ss_pred -cccccCCccEEEEecc--cccccccccccccccccccCccccCcccceeeccccccccc--ccCCCCCCCCccEEEEcc
Q 037371 202 -WLVFVQNLKQLNMQGF--TMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKS--VYPNPLPFPKLKKIQVFH 276 (330)
Q Consensus 202 -~l~~l~~L~~L~L~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~i~~ 276 (330)
.+.++++|+.|+++++ .+.+.... .....+++|++|++++|. +.+ +......+++|++|++++
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~-----------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLS-----------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHH-----------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEES
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHH-----------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccC
Confidence 2556999999999752 23332221 022347899999999884 443 122234589999999999
Q ss_pred CC
Q 037371 277 CR 278 (330)
Q Consensus 277 c~ 278 (330)
|+
T Consensus 498 n~ 499 (592)
T 3ogk_B 498 CC 499 (592)
T ss_dssp CC
T ss_pred CC
Confidence 97
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.6e-15 Score=145.84 Aligned_cols=218 Identities=15% Similarity=0.072 Sum_probs=114.0
Q ss_pred ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceee
Q 037371 28 GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLS 107 (330)
Q Consensus 28 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 107 (330)
.+|..+..+++|++|++++|.+.......++..+++|++|++++| + + ..........+++|++|+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~-~-------------~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I-E-------------DAGLEVLASTCKDLRELR 344 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G-H-------------HHHHHHHHHHCTTCCEEE
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c-C-------------HHHHHHHHHhCCCCCEEE
Confidence 344444456777777777765432222333556777777777765 3 0 112222333467777776
Q ss_pred EEE---------echhhHHHhhccccccCceEEEEEEeCCCCCCCccccccc-cccCccEEEEE--c----cCcceeeeC
Q 037371 108 WSF---------RSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA-YMENLQELELG--S----SKLEEMKID 171 (330)
Q Consensus 108 l~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~~~~~ 171 (330)
+.+ +.+.. ..+......+++|++|.+.+.. ........+. .+++|+.|+++ . +.++....+
T Consensus 345 L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~--l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQ--MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESC--CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCC--cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 633 11111 1111111224557777555554 3333333343 46777777776 2 333322110
Q ss_pred cccccCccCCCCCCCccEEEEecccccc--cCcccc-cCCccEEEEecccccccccccccccccccccCccccCccccee
Q 037371 172 STEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVF-VQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYL 248 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~-l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 248 (330)
.. -......+++|++|+++++ +.+ +..+.. +++|+.|+|+++.+.+.+.. .....+++|++|
T Consensus 422 ~~---~~~l~~~~~~L~~L~L~~~-l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L 486 (594)
T 2p1m_B 422 IG---FGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKL 486 (594)
T ss_dssp HH---HHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEE
T ss_pred hH---HHHHHhhCCCccEEeecCc-ccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEE
Confidence 00 0000134567777777663 222 333444 77888888887766544221 012457888888
Q ss_pred ecccccccccccC--CCCCCCCccEEEEccCCC
Q 037371 249 TMWRGTNVKSVYP--NPLPFPKLKKIQVFHCRQ 279 (330)
Q Consensus 249 ~l~~~~~l~~l~~--~~~~~~~L~~L~i~~c~~ 279 (330)
++++|.. .+... ....+++|+.|++.+|+.
T Consensus 487 ~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 487 EIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 8888854 33221 223478888898888864
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=3.3e-13 Score=113.98 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=116.8
Q ss_pred ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHH
Q 037371 38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ 117 (330)
Q Consensus 38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 117 (330)
..+.++.+++.+ +.+|.. + .++|++|++++|.+ ....+..+..+++|++|++++|.+.
T Consensus 20 s~~~v~c~~~~l-~~ip~~-~--~~~L~~L~Ls~n~i---------------~~~~~~~~~~l~~L~~L~L~~N~l~--- 77 (229)
T 3e6j_A 20 SGTTVDCRSKRH-ASVPAG-I--PTNAQILYLHDNQI---------------TKLEPGVFDSLINLKELYLGSNQLG--- 77 (229)
T ss_dssp ETTEEECTTSCC-SSCCSC-C--CTTCSEEECCSSCC---------------CCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred eCCEeEccCCCc-CccCCC-C--CCCCCEEEcCCCcc---------------CccCHHHhhCccCCcEEECCCCCCC---
Confidence 467788888765 778875 3 38899999999998 4345667888899999998876521
Q ss_pred HhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccc
Q 037371 118 KFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRG 197 (330)
Q Consensus 118 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 197 (330)
......+..+++|+.|++++|.++.+....+ ..+++|++|++++|.+
T Consensus 78 -------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--------~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 78 -------------------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF--------DRLVHLKELFMCCNKL 124 (229)
T ss_dssp -------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCTTCCEEECCSSCC
T ss_pred -------------------------CcChhhcccCCCcCEEECCCCcCCccChhHh--------CcchhhCeEeccCCcc
Confidence 1222356788999999999888886644332 5789999999999977
Q ss_pred cccC-cccccCCccEEEEecccccccccccccccccccccCccccCcccceeeccccc
Q 037371 198 KDLT-WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGT 254 (330)
Q Consensus 198 ~~l~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 254 (330)
..++ .+..+++|+.|+|++|.+..+.+ ..+..+++|+.|++.+++
T Consensus 125 ~~lp~~~~~l~~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 125 TELPRGIERLTHLTHLALDQNQLKSIPH------------GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSCCTTGGGCTTCSEEECCSSCCCCCCT------------TTTTTCTTCCEEECTTSC
T ss_pred cccCcccccCCCCCEEECCCCcCCccCH------------HHHhCCCCCCEEEeeCCC
Confidence 7765 67889999999999999988865 267788999999998774
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=6.4e-14 Score=135.29 Aligned_cols=205 Identities=20% Similarity=0.176 Sum_probs=135.1
Q ss_pred hhhccccccEeecCCCCCc---ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcc
Q 037371 9 GISNLVSLHHLDLSRTNIT---GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSV 85 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~---~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 85 (330)
....++.|++|+++.|.+. ..+.....+.+|+++++..+.. ...+.. +..+++|+.+++..+...
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~-~~~~~~-~~~l~~L~~l~l~~~~~~---------- 433 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV-ITMSSN-FLGLEQLEHLDFQHSNLK---------- 433 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE-EEECSC-CTTCTTCCEEECTTSEEE----------
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhcccccc-cccccc-ccccccccchhhhhcccc----------
Confidence 4557899999999999876 4567788899999999998865 334444 788999999999887651
Q ss_pred ccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCccccccccccCccEEEEEccC
Q 037371 86 LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPFNVLHLAYMENLQELELGSSK 164 (330)
Q Consensus 86 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 164 (330)
.......+..+.+++.++++.|...... .........++.|++ +... ........+..+++|+.|++++|+
T Consensus 434 ----~~~~~~~~~~l~~l~~l~ls~n~l~~~~--~~~~~~~~~L~~L~Ls~N~~--~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 434 ----QMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSF--QENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ----STTSSCTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTCEE--GGGEECSCCTTCTTCCEEECTTSC
T ss_pred ----cccccccccccccccccccccccccccc--ccccccchhhhhhhhhhccc--ccccCchhhhhccccCEEECCCCc
Confidence 1122344667888888888776543221 112233445666666 3221 122233456677777777777777
Q ss_pred cceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEecccccccccccccccccccccCccccC
Q 037371 165 LEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIF 242 (330)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
++.+.+..+ ..+++|++|+|++|.+..++ .+.++++|++|+|++|.+..+.+. .+..+
T Consensus 506 L~~l~~~~f--------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l~~l 565 (635)
T 4g8a_A 506 LEQLSPTAF--------NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ------------ELQHF 565 (635)
T ss_dssp CCEECTTTT--------TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS------------CTTCC
T ss_pred cCCcChHHH--------cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH------------HHHhh
Confidence 776644433 56677777777777665543 466777777777777777776552 44444
Q ss_pred -cccceeecccc
Q 037371 243 -ARLEYLTMWRG 253 (330)
Q Consensus 243 -~~L~~L~l~~~ 253 (330)
++|++|+++++
T Consensus 566 ~~~L~~L~L~~N 577 (635)
T 4g8a_A 566 PSSLAFLNLTQN 577 (635)
T ss_dssp CTTCCEEECTTC
T ss_pred hCcCCEEEeeCC
Confidence 46777777754
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=2.1e-16 Score=150.86 Aligned_cols=208 Identities=14% Similarity=0.085 Sum_probs=131.3
Q ss_pred hccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCc
Q 037371 11 SNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDA 90 (330)
Q Consensus 11 ~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 90 (330)
..+++|+.|+|++|.+..+|..++++++|+.|++++|.....+|.. + ..+.. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-l-----------~~~~~---------------~ 398 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-M-----------RALDP---------------L 398 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-H-----------HHHCT---------------G
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH-H-----------Hhccc---------------c
Confidence 4566777777877777777777777778887777554210111110 0 00001 2
Q ss_pred hhhHHHhccCcCcceee-EEEechhhHHH-------hhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEc
Q 037371 91 EPLMKELLGLKHLNVLS-WSFRSSLAVQK-------FLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGS 162 (330)
Q Consensus 91 ~~~~~~l~~l~~L~~L~-l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 162 (330)
+..+..++.+++|+.|+ ++.+....+.. +... ....|+.|++..+. ... ...+..+++|+.|++++
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~--l~~--lp~~~~l~~L~~L~Ls~ 472 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKD--LTV--LCHLEQLLLVTHLDLSH 472 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSC--CSS--CCCGGGGTTCCEEECCS
T ss_pred cCCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCC--CCC--CcCccccccCcEeecCc
Confidence 23444555555555555 33332222211 1100 01236777772222 233 22488999999999998
Q ss_pred cCcceeeeCcccccCccCCCCCCCccEEEEecccccccCcccccCCccEEEEecccccccc-cccccccccccccCcccc
Q 037371 163 SKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLTWLVFVQNLKQLNMQGFTMEEII-SVDKLSDISEIIGSEHNI 241 (330)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 241 (330)
|.++.++. . .+.+++|+.|+|++|.++.++.++++++|+.|+|++|.+..+. + ..++.
T Consensus 473 N~l~~lp~-~--------~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p------------~~l~~ 531 (567)
T 1dce_A 473 NRLRALPP-A--------LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI------------QPLVS 531 (567)
T ss_dssp SCCCCCCG-G--------GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT------------GGGGG
T ss_pred ccccccch-h--------hhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc------------HHHhc
Confidence 88885532 2 3678999999999998888888899999999999999998884 4 27788
Q ss_pred CcccceeecccccccccccCCCC----CCCCccEEE
Q 037371 242 FARLEYLTMWRGTNVKSVYPNPL----PFPKLKKIQ 273 (330)
Q Consensus 242 ~~~L~~L~l~~~~~l~~l~~~~~----~~~~L~~L~ 273 (330)
+++|+.|+++++ .+..++.... .+|+|+.|+
T Consensus 532 l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 532 CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 999999999988 5665544332 278888874
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.1e-13 Score=131.72 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=131.6
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|+++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+. .+|. +.+ +|++|++++|.+ +
T Consensus 69 n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~-~ip~--l~~--~L~~L~Ls~N~l-~---- 133 (571)
T 3cvr_A 69 LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLS-TLPE--LPA--SLKHLDVDNNQL-T---- 133 (571)
T ss_dssp SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC--CCT--TCCEEECCSSCC-S----
T ss_pred CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCC-Ccch--hhc--CCCEEECCCCcC-C----
Confidence 46778998774 79999999999999999 56899999999999885 4777 554 999999999988 2
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELEL 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 160 (330)
. ++. .+++|+.|++++|.+..++. ...+|+.|++..+. ..... . +. ++|+.|++
T Consensus 134 ----------~-lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~--L~~lp-~-l~--~~L~~L~L 187 (571)
T 3cvr_A 134 ----------M-LPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQ--LTFLP-E-LP--ESLEALDV 187 (571)
T ss_dssp ----------C-CCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSC--CSCCC-C-CC--TTCCEEEC
T ss_pred ----------C-CCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCC--CCCcc-h-hh--CCCCEEEC
Confidence 2 222 68899999999998765332 45679999983222 23322 2 44 89999999
Q ss_pred EccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC-cccccCCccEEEEeccccccccc
Q 037371 161 GSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT-WLVFVQNLKQLNMQGFTMEEIIS 224 (330)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~l~~~~~ 224 (330)
++|.++.+.. .. . .-....+.|+.|++++|.++.++ .+..+++|+.|+|++|.+....+
T Consensus 188 s~N~L~~lp~-~~---~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 188 STNLLESLPA-VP---V-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cCCCCCchhh-HH---H-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 9888885543 11 0 00011122399999999888876 47789999999999999877655
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=4.7e-13 Score=107.32 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=50.9
Q ss_pred ccccEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCch
Q 037371 14 VSLHHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAE 91 (330)
Q Consensus 14 ~~L~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 91 (330)
++|++|++++|.+. .+|..+..+++|++|++++|.+. .+ .. +..+++|++|++++|.+ ..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~N~l---------------~~ 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SN-LPKLPKLKKLELSENRI---------------FG 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SS-CCCCSSCCEEEEESCCC---------------CS
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hh-hccCCCCCEEECcCCcC---------------ch
Confidence 56777777777776 67766677777777777777653 33 22 67777777777777766 22
Q ss_pred hhHHHhccCcCcceeeEEEec
Q 037371 92 PLMKELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 92 ~~~~~l~~l~~L~~L~l~~~~ 112 (330)
..+..+..+++|+.|++++|.
T Consensus 86 ~~~~~~~~l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 86 GLDMLAEKLPNLTHLNLSGNK 106 (168)
T ss_dssp CCCHHHHHCTTCCEEECBSSS
T ss_pred HHHHHHhhCCCCCEEeccCCc
Confidence 234444445555555555443
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=106.95 Aligned_cols=127 Identities=15% Similarity=0.230 Sum_probs=90.4
Q ss_pred cEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHH
Q 037371 17 HHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKE 96 (330)
Q Consensus 17 ~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (330)
+++++++++++.+|..+. ++|++|++++|.+ ..+|.. +.++++|++|++++|.+ ....+..
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~-~~~l~~L~~L~Ls~N~i---------------~~i~~~~ 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKE-LSNYKHLTLIDLSNNRI---------------STLSNQS 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGG-GGGCTTCCEEECCSSCC---------------CCCCTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHH-hhcccCCCEEECCCCcC---------------CEeCHhH
Confidence 678888888888877543 5788888888866 567754 78888888888888877 3334455
Q ss_pred hccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccccc
Q 037371 97 LLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEV 176 (330)
Q Consensus 97 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 176 (330)
+..+++|+.|++++|.+. ......+..+++|+.|+++.|.++.+....+
T Consensus 74 f~~l~~L~~L~Ls~N~l~----------------------------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--- 122 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLR----------------------------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--- 122 (193)
T ss_dssp TTTCTTCCEEECCSSCCC----------------------------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTT---
T ss_pred ccCCCCCCEEECCCCccC----------------------------EeCHHHhCCCCCCCEEECCCCCCCeeChhhh---
Confidence 777888888887766522 2222356778888888888888876644332
Q ss_pred CccCCCCCCCccEEEEeccccc
Q 037371 177 KKLFRNGFRSLNTVVLRSCRGK 198 (330)
Q Consensus 177 ~~~~~~~~~~L~~L~L~~~~~~ 198 (330)
..+++|+.|++++|.+.
T Consensus 123 -----~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 123 -----NDLSALSHLAIGANPLY 139 (193)
T ss_dssp -----TTCTTCCEEECCSSCEE
T ss_pred -----hcCccccEEEeCCCCee
Confidence 56788899999888543
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=5.5e-14 Score=135.03 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=149.4
Q ss_pred hhccccccEeecCCC-CCcccChhhhcCcccceeccCCCCC------------------------------CCCCchhhh
Q 037371 10 ISNLVSLHHLDLSRT-NITGLPQELKALEKLRYLNLDHTRF------------------------------LSIIPPQLI 58 (330)
Q Consensus 10 l~~l~~L~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~~~~------------------------------~~~~p~~~~ 58 (330)
+.++++|++|++++| .+..+|..+..+++|++|++..+.. ...++. ++
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HH
Confidence 355689999999988 4446777777788888887654411 012232 13
Q ss_pred CCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeC
Q 037371 59 SGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECG 137 (330)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~ 137 (330)
..+++|++|++++|.+ + .......+.++++|++|++.++ .. ...+......+.+|++|++ +|.
T Consensus 286 ~~~~~L~~L~L~~~~l-~-------------~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~ 349 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATV-Q-------------SYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSE 349 (594)
T ss_dssp HHHTTCCEEECTTCCC-C-------------HHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSC
T ss_pred HhhCCCCEEEccCCCC-C-------------HHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCc
Confidence 4678999999999887 2 2234455778999999999987 22 1222222234677999999 532
Q ss_pred ------CCCCCCccccccc-cccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEe-----cc-cccccC---
Q 037371 138 ------TYTRPPFNVLHLA-YMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLR-----SC-RGKDLT--- 201 (330)
Q Consensus 138 ------~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~-----~~-~~~~l~--- 201 (330)
...........+. .+++|+.|.++|+.++....... ...+++|++|++. +| .++..+
T Consensus 350 ~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l-------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI-------ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp TTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH-------HHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred ccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH-------HhhCCCcceeEeecccCCCcccccCCchhh
Confidence 1112222233333 58999999888888775432221 1247899999999 44 555322
Q ss_pred ----cccccCCccEEEEecccccccccccccccccccccCccc-cCcccceeecccccccccccCC--CCCCCCccEEEE
Q 037371 202 ----WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHN-IFARLEYLTMWRGTNVKSVYPN--PLPFPKLKKIQV 274 (330)
Q Consensus 202 ----~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~i 274 (330)
.+..+++|+.|+|++ .+.+.... .+. .+++|+.|++++|. +.+.... ...+++|++|++
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~------------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFE------------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHH------------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHH------------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEEC
Confidence 256789999999977 44443221 233 38899999999984 4332211 134899999999
Q ss_pred ccCCC
Q 037371 275 FHCRQ 279 (330)
Q Consensus 275 ~~c~~ 279 (330)
++|+.
T Consensus 489 ~~n~~ 493 (594)
T 2p1m_B 489 RDCPF 493 (594)
T ss_dssp ESCSC
T ss_pred cCCCC
Confidence 99975
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=1.5e-12 Score=106.84 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=100.3
Q ss_pred ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHH
Q 037371 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMK 95 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (330)
-+++++++++++.+|..+.. +|++|++++|.+.+..+..+++.+++|++|++++|.+ ....+.
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l---------------~~~~~~ 72 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL---------------TGIEPN 72 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC---------------CCBCTT
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC---------------CCcCHh
Confidence 37899999999989886644 8999999999774443333578899999999999888 435567
Q ss_pred HhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccc
Q 037371 96 ELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEE 175 (330)
Q Consensus 96 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 175 (330)
.+..+++|+.|++++|.+. ......+..+++|++|++++|.++.+.+..+
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 122 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIK----------------------------EISNKMFLGLHQLKTLNLYDNQISCVMPGSF-- 122 (192)
T ss_dssp TTTTCTTCCEEECCSCCCC----------------------------EECSSSSTTCTTCCEEECCSSCCCEECTTSS--
T ss_pred HcCCcccCCEEECCCCcCC----------------------------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--
Confidence 7888999999998877532 1222346788999999999888887754443
Q ss_pred cCccCCCCCCCccEEEEecccccc
Q 037371 176 VKKLFRNGFRSLNTVVLRSCRGKD 199 (330)
Q Consensus 176 ~~~~~~~~~~~L~~L~L~~~~~~~ 199 (330)
..+++|++|++++|.+..
T Consensus 123 ------~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 123 ------EHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ------TTCTTCCEEECTTCCBCC
T ss_pred ------hcCCCCCEEEeCCCCccC
Confidence 678899999999996553
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=2.1e-12 Score=105.95 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=34.1
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChh--hhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQE--LKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~--l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
+++++|..+.. +|++|++++|.+..++.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKI 90 (192)
T ss_dssp CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCC
T ss_pred CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCcC
Confidence 34445544432 555555555555544432 455555555555555443333332 55555555555555554
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1.5e-12 Score=102.20 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=65.6
Q ss_pred ccccccEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCC
Q 037371 12 NLVSLHHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDD 89 (330)
Q Consensus 12 ~l~~L~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 89 (330)
..++|++|++++|.+. .+|..+..+++|++|++++|.+.. + . .++.+++|++|++++|.+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~Ls~n~i--------------- 76 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-A-NLPKLNKLKKLELSDNRV--------------- 76 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-T-TCCCCTTCCEEECCSSCC---------------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-h-hhhcCCCCCEEECCCCcc---------------
Confidence 3478999999999988 788888889999999999997744 4 3 388899999999999888
Q ss_pred chhhHHHhccCcCcceeeEEEech
Q 037371 90 AEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 90 ~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
....+..+..+++|++|++++|.+
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTSCC
T ss_pred cchHHHHhhhCCCCCEEECCCCcC
Confidence 334566666677777777776653
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=4.7e-12 Score=112.79 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=43.5
Q ss_pred cccccEeecCCCCCc--------------------ccCh-hhhc--------CcccceeccCCCCCCCCCchhhhCCCCC
Q 037371 13 LVSLHHLDLSRTNIT--------------------GLPQ-ELKA--------LEKLRYLNLDHTRFLSIIPPQLISGFSK 63 (330)
Q Consensus 13 l~~L~~L~L~~~~~~--------------------~lp~-~l~~--------l~~L~~L~l~~~~~~~~~p~~~~~~l~~ 63 (330)
+++|++|+|++|.+. .+|. .|.. +.+|+.+++.. .+ ..++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i-~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KI-KNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TC-CEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cc-cchhHHHhhcCcc
Confidence 677999999998877 3443 3456 78888888877 34 5666666888888
Q ss_pred CcEEEeccCCC
Q 037371 64 LEVLRLLSRGR 74 (330)
Q Consensus 64 L~~L~l~~~~~ 74 (330)
|+.|++.++.+
T Consensus 126 L~~l~l~~n~i 136 (329)
T 3sb4_A 126 LKICQIRKKTA 136 (329)
T ss_dssp CCEEEBCCSSC
T ss_pred cceEEcCCCCc
Confidence 88888887765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=2.9e-12 Score=102.59 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=81.7
Q ss_pred CCCc--cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLS--KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~--~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+ +.
T Consensus 34 n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~- 109 (168)
T 2ell_A 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHLNLSGNKL-KD- 109 (168)
T ss_dssp CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEEECBSSSC-CS-
T ss_pred CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEEeccCCcc-Cc-
Confidence 4566 8898899999999999999999988 77899999999999999886656764 77899999999999988 21
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
...+..+..+++|+.|++++|.+.
T Consensus 110 ------------~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 110 ------------ISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ------------SGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ------------chhHHHHhcCCCCCEEEeeCCcCc
Confidence 123367888999999999888654
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=101.92 Aligned_cols=94 Identities=27% Similarity=0.314 Sum_probs=61.2
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|++.++|..+. ++|++|++++|.+..+|..+..+++|++|++++|.+. .++..++.++++|++|++++|.+
T Consensus 20 ~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~l------ 90 (193)
T 2wfh_A 20 KGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL------ 90 (193)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC------
T ss_pred CCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCcc------
Confidence 35666776554 4677777777777777777777777777777777663 34433477777777777777766
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 112 (330)
....+..+..+++|+.|++++|.
T Consensus 91 ---------~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 91 ---------RCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp ---------CBCCTTTTTTCTTCCEEECCSSC
T ss_pred ---------CEeCHHHhCCCCCCCEEECCCCC
Confidence 22334456666777777766554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.3e-11 Score=99.72 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=40.0
Q ss_pred hhhccccccEeecCCCCCcccChhhhcCc-ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQELKALE-KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
.+.++.+|++|++++|.+..+|. +..+. +|++|++++|.+. .++ . ++.+++|++|++++|.+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~-~~~-~-l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIR-KLD-G-FPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCC-EEC-C-CCCCSSCCEEECCSSCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCC-ccc-c-cccCCCCCEEECCCCcc
Confidence 35556677777777777776654 33333 7777777777653 332 2 66777777777777666
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=3.7e-11 Score=96.99 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=93.0
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
..+.++++++++..+|..+ .++|++|++++|.+ ..+|..+++.+++|++|++++|.+ .....
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l---------------~~~~~ 69 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQNQI---------------QSLPD 69 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCC---------------CCCCT
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCCcc---------------eEeCh
Confidence 4578888888888888654 36889999998877 455555578889999999998887 22333
Q ss_pred HHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCccc
Q 037371 95 KELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTE 174 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 174 (330)
..+..+++|+.|++++|.+. ......+..+++|+.|+++.|.++.+....
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~----------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-- 119 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQ----------------------------SLPNGVFDKLTQLKELALDTNQLKSVPDGI-- 119 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCC----------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT--
T ss_pred hHccCCCccCEEECCCCCcc----------------------------ccCHHHhhCCcccCEEECcCCcceEeCHHH--
Confidence 44677888888888766422 222234677888899999888887554332
Q ss_pred ccCccCCCCCCCccEEEEeccccc
Q 037371 175 EVKKLFRNGFRSLNTVVLRSCRGK 198 (330)
Q Consensus 175 ~~~~~~~~~~~~L~~L~L~~~~~~ 198 (330)
...+++|++|++++|.+.
T Consensus 120 ------~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 120 ------FDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ------TTTCTTCCEEECCSSCBC
T ss_pred ------hcCCcccCEEEecCCCee
Confidence 256788999999988554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=5.9e-12 Score=98.71 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=83.3
Q ss_pred CCCc--cCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLS--KLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~--~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|.+. .+|..++.+++|++|++++|.+..+ ..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus 27 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~ls~N~i---- 100 (149)
T 2je0_A 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHLNLSGNKI---- 100 (149)
T ss_dssp CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEEECTTSCC----
T ss_pred CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEEECCCCcC----
Confidence 3455 7898899999999999999999988 77899999999999999886657764 77899999999999998
Q ss_pred ccccCccccCCch-hhHHHhccCcCcceeeEEEechhh
Q 037371 79 EEEEGSVLCDDAE-PLMKELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~ 115 (330)
.. ..+..+..+++|++|++++|.+..
T Consensus 101 -----------~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 101 -----------KDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp -----------CSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred -----------CChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 32 244778999999999999887554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=5.1e-11 Score=96.19 Aligned_cols=69 Identities=26% Similarity=0.490 Sum_probs=32.2
Q ss_pred CccCChhhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 3 LSKLPSGISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 3 l~~lp~~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
+.++|..+. ++|++|++++|++..+|. .+..+++|++|++++|.+ ..+|..++..+++|++|++++|.+
T Consensus 19 l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp CSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCCc
Confidence 444443332 345555555555554443 234455555555555544 233333344555555555555544
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=1.9e-11 Score=116.64 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 2 SLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
.++.+|. |+.+++|++|+|++|.++.+|..++.+++|++|++++|.+. .+| . ++++++|++|++++|.+
T Consensus 452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VANLPRLQELLLCNNRL 520 (567)
T ss_dssp CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSSCC
T ss_pred CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cCCCCCCcEEECCCCCC
Confidence 3444443 45555555555555554455544555555555555554442 244 2 44555555555555444
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1.5e-11 Score=120.78 Aligned_cols=92 Identities=22% Similarity=0.183 Sum_probs=70.7
Q ss_pred ccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccC
Q 037371 4 SKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEG 83 (330)
Q Consensus 4 ~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 83 (330)
...|..+..+..|++|+|++|.+..+|..+..+++|++|+|++|.+. .+|.. ++++++|++|++++|.+
T Consensus 214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l--------- 282 (727)
T 4b8c_D 214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLDLSHNRL--------- 282 (727)
T ss_dssp --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEECTTSCC---------
T ss_pred ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEeCcCCcC---------
Confidence 33456688889999999999998889888889999999999999774 78876 88899999999999888
Q ss_pred ccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 84 SVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 84 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
. .++..+..+++|+.|++++|.+
T Consensus 283 ------~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 283 ------T-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp ------S-SCCSSGGGGTTCSEEECCSSCC
T ss_pred ------C-ccChhhcCCCCCCEEECCCCCC
Confidence 3 4466678888888888887754
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=3.7e-11 Score=96.85 Aligned_cols=96 Identities=22% Similarity=0.281 Sum_probs=77.4
Q ss_pred CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+.++|..+. ++|++|+|++|.+..+ |..+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+
T Consensus 22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~l----- 93 (174)
T 2r9u_A 22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDNHL----- 93 (174)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCCcc-----
Confidence 46788898775 7899999999999977 55788999999999999977 566766578999999999999888
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
.......+..+++|+.|++++|.+.
T Consensus 94 ----------~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 ----------KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----------CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----------ceeCHHHhccccCCCEEEeCCCCcc
Confidence 3223344788999999999988653
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.15 E-value=4e-11 Score=96.28 Aligned_cols=95 Identities=24% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCCccCChhhhccccccEeecCCCCCccc-ChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGL-PQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+.++|..+. ++|++|+|++|.++.+ |..+..+++|++|++++|.+ ..+|..++.++++|++|++++|.+
T Consensus 19 n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~l----- 90 (170)
T 3g39_A 19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQL----- 90 (170)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC-----
T ss_pred CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCcc-----
Confidence 56788898774 7899999999999977 55688999999999999977 566666578999999999999888
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
.......+..+++|+.|++++|..
T Consensus 91 ----------~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 91 ----------KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp ----------CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ----------CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 323344578889999999998864
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=7.8e-13 Score=109.06 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=91.6
Q ss_pred hhccccccEeecCCCCCc-------ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 10 ISNLVSLHHLDLSRTNIT-------GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 10 l~~l~~L~~L~L~~~~~~-------~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
+.....+..++++.+.+. .+|..+..+++|++|++++|.+ ..+| . +.++++|++|++++|.+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l-~~l~-~-~~~l~~L~~L~l~~n~l-------- 82 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI-EKIS-S-LSGMENLRILSLGRNLI-------- 82 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE-SCCC-C-HHHHTTCCEEEEEEEEE--------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC-cccc-c-cccCCCCCEEECCCCCc--------
Confidence 444455555555554433 3334777777888888877766 3466 3 77777788888877766
Q ss_pred CccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE-EeCCCCCCCc-cccccccccCccEEEE
Q 037371 83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV-ECGTYTRPPF-NVLHLAYMENLQELEL 160 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-~~~~l~~l~~L~~L~l 160 (330)
. .++..+..+++|+.|++++|.+..++.+. .+.+|+.|++ +..- ... ....+..+++|++|++
T Consensus 83 -------~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~----~l~~L~~L~l~~N~i---~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 83 -------K-KIENLDAVADTLEELWISYNQIASLSGIE----KLVNLRVLYMSNNKI---TNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp -------C-SCSSHHHHHHHCSEEEEEEEECCCHHHHH----HHHHSSEEEESEEEC---CCHHHHHHHTTTTTCSEEEE
T ss_pred -------c-cccchhhcCCcCCEEECcCCcCCcCCccc----cCCCCCEEECCCCcC---CchhHHHHHhcCCCCCEEEe
Confidence 2 23334555677777888777766554332 2455777777 4332 221 1245778889999999
Q ss_pred EccCcceeeeCcc--cccCccCCCCCCCccEEE
Q 037371 161 GSSKLEEMKIDST--EEVKKLFRNGFRSLNTVV 191 (330)
Q Consensus 161 ~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~L~ 191 (330)
++|.++...+... ..........+++|+.|+
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8777754432210 000000124578888886
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=2.1e-12 Score=106.48 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=101.2
Q ss_pred hhhcCcccceeccCCCCCCCCCch------hhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcce
Q 037371 32 ELKALEKLRYLNLDHTRFLSIIPP------QLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNV 105 (330)
Q Consensus 32 ~l~~l~~L~~L~l~~~~~~~~~p~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 105 (330)
.+.....++.++++.+.+.+.+|. . ++.+++|++|++++|.+ .. ++ .+.++++|+.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l---------------~~-l~-~~~~l~~L~~ 74 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNI---------------EK-IS-SLSGMENLRI 74 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEE---------------SC-CC-CHHHHTTCCE
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCC---------------cc-cc-ccccCCCCCE
Confidence 355667777778877766655554 5 88999999999999888 22 33 7788899999
Q ss_pred eeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCC
Q 037371 106 LSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFR 185 (330)
Q Consensus 106 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (330)
|++++|.+..++ ..+..+++|+.|++++|.++.+. . ...++
T Consensus 75 L~l~~n~l~~l~-----------------------------~~~~~~~~L~~L~L~~N~l~~l~--~--------~~~l~ 115 (198)
T 1ds9_A 75 LSLGRNLIKKIE-----------------------------NLDAVADTLEELWISYNQIASLS--G--------IEKLV 115 (198)
T ss_dssp EEEEEEEECSCS-----------------------------SHHHHHHHCSEEEEEEEECCCHH--H--------HHHHH
T ss_pred EECCCCCccccc-----------------------------chhhcCCcCCEEECcCCcCCcCC--c--------cccCC
Confidence 999988643211 12344567777777766665432 1 23456
Q ss_pred CccEEEEecccccccC---cccccCCccEEEEecccccccccccccccccccccCccccCcccceeec
Q 037371 186 SLNTVVLRSCRGKDLT---WLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTM 250 (330)
Q Consensus 186 ~L~~L~L~~~~~~~l~---~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 250 (330)
+|++|++++|.+..++ .+..+++|++|++++|.+....+.... ........+..+++|+.|+-
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~--~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA--TSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT--HHHHHHHHHHHCSSCSEECC
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc--hHHHHHHHHHhCCCcEEECC
Confidence 7777777777655533 466777788888877776555331000 00000012556777777763
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=7.1e-10 Score=98.60 Aligned_cols=227 Identities=13% Similarity=0.081 Sum_probs=135.2
Q ss_pred cCChh-hhc--------cccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 5 KLPSG-ISN--------LVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 5 ~lp~~-l~~--------l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
++|.. |.+ |.+|+.+++.. +++.++. .|..|++|+.+++..|.+ ..++..+|.++.++..+.......
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i-~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA-PNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC-CEECTTSSCTTTCEEEECTTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc-cccchhhhcCCCceEEecCcchhh
Confidence 45653 777 99999999999 8888876 678999999999999866 466766788888888777655211
Q ss_pred CCccccccCccccCCchhhHHHhccCcCcc-eeeEEEechhhHHH-hhccccccCceEEEEE-EeCCCCCCCcccccc-c
Q 037371 75 WSVLEEEEGSVLCDDAEPLMKELLGLKHLN-VLSWSFRSSLAVQK-FLKYPKLVSITQSVWV-ECGTYTRPPFNVLHL-A 150 (330)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l-~~~~~~~~~~~~~~l-~ 150 (330)
... . .......+..+..|+ .+.+.... .+.. +.........+..+.+ +. ........+ .
T Consensus 161 ~~~---~--------~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~----l~~~~~~~l~~ 223 (329)
T 3sb4_A 161 YRF---K--------NRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK----LDNADFKLIRD 223 (329)
T ss_dssp HHT---S--------TTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC----CCHHHHHHHHH
T ss_pred hhc---c--------ccccccccccccccceeEEecCCC--cHHHHHhhcccCccccceEEEeee----ecHHHHHHHHH
Confidence 000 0 000111233444444 33332111 1111 1111112233444554 21 111111222 2
Q ss_pred cccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc--CcccccCCcc-EEEEecccccccccccc
Q 037371 151 YMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL--TWLVFVQNLK-QLNMQGFTMEEIISVDK 227 (330)
Q Consensus 151 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~-~L~L~~~~l~~~~~~~~ 227 (330)
.+++|+.+++..+.++.+....+ ..+.+|++|.+.++ +..+ .++.++++|+ .+.+.+ .++.+..
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF--------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~--- 290 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTF--------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF--- 290 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTT--------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT---
T ss_pred hcCCCeEEECCCCCcceecHhhh--------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch---
Confidence 36788888888767776654443 66778888888776 3333 3577788888 888877 6666654
Q ss_pred cccccccccCccccCcccceeecccccccccccCCCCC-CCCccEEE
Q 037371 228 LSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQ 273 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~ 273 (330)
..+..+++|+.|++... .++.+....+. +++|+.++
T Consensus 291 ---------~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 ---------GAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------TTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ---------hhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 26777788888887654 56666655433 66777765
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=6.3e-09 Score=94.96 Aligned_cols=251 Identities=9% Similarity=0.010 Sum_probs=159.7
Q ss_pred CCCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
+++++++.. |.++ +|+.+.+..+ +..++. .|.+ .+|+.+.+..+ + ..++..+|.++++|+.+++.++.+ +.
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l-~~I~~~aF~~c~~L~~l~l~~n~l-~~- 194 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-L-EQLKEDIFYYCYNLKKADLSKTKI-TK- 194 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-C-CEECSSTTTTCTTCCEEECTTSCC-SE-
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-c-cEehHHHhhCcccCCeeecCCCcc-eE-
Confidence 356667654 7775 7999998775 666766 4444 57999998763 3 566666689999999999988776 22
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEE
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQEL 158 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 158 (330)
.....+. ..+|+.+.+..+ +..+. ...+..+.+|+.+.+.- + ........|.+ .+|+.+
T Consensus 195 -------------I~~~aF~-~~~L~~l~lp~~-l~~I~--~~aF~~~~~L~~l~l~~-~--l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 195 -------------LPASTFV-YAGIEEVLLPVT-LKEIG--SQAFLKTSQLKTIEIPE-N--VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp -------------ECTTTTT-TCCCSEEECCTT-CCEEC--TTTTTTCTTCCCEECCT-T--CCEECTTTTTT-CCCSEE
T ss_pred -------------echhhEe-ecccCEEEeCCc-hheeh--hhHhhCCCCCCEEecCC-C--ccCcccccccc-CCccEE
Confidence 1122233 467887777532 21111 12234455677777711 1 12223344555 678888
Q ss_pred EEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccc-------ccCcccccCCccEEEEecccccccccccccccc
Q 037371 159 ELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGK-------DLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDI 231 (330)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-------~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 231 (330)
.+. +.++.+.... ...+++|+.+.+.++... .-.++.++++|+.+.|.+ .++.++.
T Consensus 254 ~lp-~~i~~I~~~a--------F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------- 316 (401)
T 4fdw_A 254 KLP-NGVTNIASRA--------FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------- 316 (401)
T ss_dssp EEE-TTCCEECTTT--------TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT-------
T ss_pred EeC-CCccEEChhH--------hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh-------
Confidence 885 4455554433 477899999999887332 233688899999999984 5777755
Q ss_pred cccccCccccCcccceeecccccccccccCCCCC-CCCccEEEEccCCCCCCCCCCCcC-CCCCceEEeccHHHHh
Q 037371 232 SEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPLP-FPKLKKIQVFHCRQLKKLPLNSSS-AKGRRVVIEGTKKWWE 305 (330)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~-~~~~~~~i~~~~~~~~ 305 (330)
..+..+++|+.+.+.. .++.+...... + +|+.+.+.+. .+..++..... ....+..+..+....+
T Consensus 317 -----~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 317 -----GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -----TTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -----hhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence 3777889999999964 36666655444 5 9999999984 66666655444 2223444554443333
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=6.8e-09 Score=94.77 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=136.1
Q ss_pred CCccCChh-hhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 2 SLSKLPSG-ISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 2 ~l~~lp~~-l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
++.+++.. |.++ +|+.+.+.. ++..++. .|..|.+|+.+++..|.+ ..++..++. ..+|+.+.+..+ +
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l-~~I~~~aF~-~~~L~~l~lp~~-l----- 214 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI-TKLPASTFV-YAGIEEVLLPVT-L----- 214 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC-SEECTTTTT-TCCCSEEECCTT-C-----
T ss_pred CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc-eEechhhEe-ecccCEEEeCCc-h-----
Confidence 35566654 6664 688888886 5666654 677888899999988755 667766565 588888888753 3
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELE 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 159 (330)
.......+..+++|+.+.+..+ +..+.. ..+.. ..|+.+.+. .. ........|.++++|+.++
T Consensus 215 ----------~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--~aF~~-~~L~~i~lp-~~--i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 215 ----------KEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--EAFRE-SGITTVKLP-NG--VTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp ----------CEECTTTTTTCTTCCCEECCTT-CCEECT--TTTTT-CCCSEEEEE-TT--CCEECTTTTTTCTTCCEEE
T ss_pred ----------heehhhHhhCCCCCCEEecCCC-ccCccc--ccccc-CCccEEEeC-CC--ccEEChhHhhCCCCCCEEE
Confidence 2233456778888888887643 111111 11111 457777771 11 2334456788999999999
Q ss_pred EEccCcc-----eeeeCcccccCccCCCCCCCccEEEEecccccc--cCcccccCCccEEEEeccccccccccccccccc
Q 037371 160 LGSSKLE-----EMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLVFVQNLKQLNMQGFTMEEIISVDKLSDIS 232 (330)
Q Consensus 160 l~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~ 232 (330)
+..+... .+... ....+++|+.+.|.+. +.. -.++.++++|+.+.|..+ +..+..
T Consensus 278 l~~~~~~~~~~~~I~~~--------aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-------- 339 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPY--------CLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINF-------- 339 (401)
T ss_dssp EESSCCCCCTTCEECTT--------TTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECT--------
T ss_pred eCCccccCCcccEECHH--------HhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcH--------
Confidence 9865543 23222 3467889999999854 333 346888999999999653 666654
Q ss_pred ccccCccccCcccceeecccccccccc
Q 037371 233 EIIGSEHNIFARLEYLTMWRGTNVKSV 259 (330)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~~~~l~~l 259 (330)
..+..+ +|+.+.+.+. .+..+
T Consensus 340 ----~aF~~~-~L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 340 ----SAFNNT-GIKEVKVEGT-TPPQV 360 (401)
T ss_dssp ----TSSSSS-CCCEEEECCS-SCCBC
T ss_pred ----HhCCCC-CCCEEEEcCC-CCccc
Confidence 267777 8999999887 44443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.96 E-value=2.8e-10 Score=111.80 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=86.8
Q ss_pred CCCccCChhhhccccccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
|.+..+|..+.++++|++|+|++|.++.+|..++.+++|++|+|++|.+. .+|.. ++++++|++|++++|.+
T Consensus 234 n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l------ 305 (727)
T 4b8c_D 234 LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMV------ 305 (727)
T ss_dssp SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCC------
T ss_pred CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCC------
Confidence 56788999999999999999999999999999999999999999999885 88887 89999999999999988
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 115 (330)
. .++..+.++++|+.|++++|.+..
T Consensus 306 ---------~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 306 ---------T-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ---------C-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ---------C-ccChhhhcCCCccEEeCCCCccCC
Confidence 2 455668999999999999987653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=9.8e-10 Score=88.09 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=58.5
Q ss_pred cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 15 SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 15 ~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
..+++++++++++.+|..+. ++|++|++++|.+.+..|. .+.++++|++|++++|.+ ....+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l---------------~~l~~ 71 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQL---------------TVLPA 71 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCC---------------CCCCT
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCc---------------CccCh
Confidence 46889999999999998663 8899999999988544454 488999999999999888 22222
Q ss_pred HHhccCcCcceeeEEEec
Q 037371 95 KELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~ 112 (330)
..+..+++|++|++++|.
T Consensus 72 ~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred hhccCCCCCCEEECCCCc
Confidence 334556666666665543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=3.8e-11 Score=108.65 Aligned_cols=72 Identities=14% Similarity=-0.006 Sum_probs=40.4
Q ss_pred cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC------cccccCCccEEEEeccccccc
Q 037371 149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT------WLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~------~l~~l~~L~~L~L~~~~l~~~ 222 (330)
+...++|++|++++|.+++...... .......++|++|+|++|.+++.. .+...++|++|+|++|.+.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L----~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELL----AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHH----HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHH----HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 3456667777777666654321111 001123456777777777555421 234567777777777776655
Q ss_pred cc
Q 037371 223 IS 224 (330)
Q Consensus 223 ~~ 224 (330)
+.
T Consensus 255 g~ 256 (372)
T 3un9_A 255 GR 256 (372)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=1.7e-09 Score=87.07 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=46.6
Q ss_pred ccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 16 LHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 16 L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
-++++++++++..+|..+. ++|++|++++|.+.+..|. .+.++++|++|++++|.+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKL 69 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCC
Confidence 4789999999999998664 8899999999987544454 488999999999999887
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.91 E-value=1.5e-09 Score=87.48 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=86.3
Q ss_pred CCCccCChhhhccc-cccEeecCCCCCcccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccc
Q 037371 1 LSLSKLPSGISNLV-SLHHLDLSRTNITGLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLE 79 (330)
Q Consensus 1 ~~l~~lp~~l~~l~-~L~~L~L~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 79 (330)
|.+..+|. +..+. +|++|++++|.+..+ ..+..+++|++|++++|.+ ..+|+.+++.+++|++|++++|.+ ..
T Consensus 29 n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~i-~~-- 102 (176)
T 1a9n_A 29 YKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELILTNNSL-VE-- 102 (176)
T ss_dssp SCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEECCSCCC-CC--
T ss_pred CCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCEEECCCCcC-Cc--
Confidence 45677764 55555 999999999999887 5788999999999999977 566765468899999999999888 21
Q ss_pred cccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHh-hccccccCceEEEEE
Q 037371 80 EEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKF-LKYPKLVSITQSVWV 134 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l 134 (330)
. .....+..+++|+.|++++|.+...... ......++.|+.|++
T Consensus 103 ----------~-~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 103 ----------L-GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ----------G-GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ----------c-hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 0 1123678899999999999887654331 011234566888877
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=8.1e-10 Score=98.86 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=76.9
Q ss_pred CCCccCChhhhccccccEeecCC-CCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcc
Q 037371 1 LSLSKLPSGISNLVSLHHLDLSR-TNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVL 78 (330)
Q Consensus 1 ~~l~~lp~~l~~l~~L~~L~L~~-~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 78 (330)
|+|.++|. |..+.+|++|+|++ |.+..+|. .+..+++|++|+|++|.+.+ +++.+|.++++|++|++++|.+ +.
T Consensus 19 n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l-~~- 94 (347)
T 2ifg_A 19 GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNAL-ES- 94 (347)
T ss_dssp CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCC-SC-
T ss_pred CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCcc-ce-
Confidence 47899999 99999999999996 99998874 68999999999999998744 5544589999999999999988 22
Q ss_pred ccccCccccCCchhhHHHhccCcCcceeeEEEech
Q 037371 79 EEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSS 113 (330)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 113 (330)
..+..+..++ |+.|++.+|.+
T Consensus 95 -------------~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 95 -------------LSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp -------------CCSTTTCSCC-CCEEECCSSCC
T ss_pred -------------eCHHHcccCC-ceEEEeeCCCc
Confidence 2223344444 99999998865
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=3.4e-08 Score=88.23 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=69.6
Q ss_pred cEeecCCC-CCcccChhhhcCcccceeccCC-CCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccccCCchhhH
Q 037371 17 HHLDLSRT-NITGLPQELKALEKLRYLNLDH-TRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLM 94 (330)
Q Consensus 17 ~~L~L~~~-~~~~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (330)
..++.+++ ++..+|. +..+.+|+.|+|++ |.+ ..+|...++++++|++|++++|.+ ....+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l-~~~~~~~~~~l~~L~~L~l~~N~l---------------~~~~~ 73 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHL-QHLELRDLRGLGELRNLTIVKSGL---------------RFVAP 73 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSC-CEECGGGSCSCCCCSEEECCSSCC---------------CEECT
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCC-CCcChhHhccccCCCEEECCCCcc---------------ceeCH
Confidence 45788888 8999999 99999999999996 866 666655599999999999999998 44556
Q ss_pred HHhccCcCcceeeEEEechhh
Q 037371 95 KELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 95 ~~l~~l~~L~~L~l~~~~~~~ 115 (330)
..+.++++|+.|++++|.+..
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSC
T ss_pred HHhcCCcCCCEEeCCCCccce
Confidence 678999999999999987654
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=8e-09 Score=92.83 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=44.1
Q ss_pred ccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEeccccccc------CcccccCCccEEEEeccccccc
Q 037371 150 AYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDL------TWLVFVQNLKQLNMQGFTMEEI 222 (330)
Q Consensus 150 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l------~~l~~l~~L~~L~L~~~~l~~~ 222 (330)
..+|+|+.|++..+.+.+...... ...+.+++|++|+|+.|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~l-----a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMF-----LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHH-----HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHH-----HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 357889999998555543211111 0113468899999988866552 2345688999999988776654
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=1.4e-07 Score=84.70 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred hHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccc--cccCccEEEEE-c-cCc-ce
Q 037371 93 LMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLA--YMENLQELELG-S-SKL-EE 167 (330)
Q Consensus 93 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~--~l~~L~~L~l~-~-~~~-~~ 167 (330)
+...+..+++|+.|.+.++....+. . . ...+|++|++.+.. ........+. .+|+|++|+++ + +.. .+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~---~-~-~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIG---K-K-PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCC---S-C-BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceec---c-c-cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 4455667777787777765311111 1 1 14557777773222 1222223333 67888888886 2 111 11
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecccccc--cCcc---cccCCccEEEEecccccccccccccccccccccCccccC
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWL---VFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIF 242 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l---~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (330)
...... ........+++|++|.+.+|.+.+ ...+ ..+++|++|+|+.|.+.+.+..... ..+..+
T Consensus 237 ~~~~~l--~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~--------~~L~~l 306 (362)
T 2ra8_A 237 GDMNVF--RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL--------DHVDKI 306 (362)
T ss_dssp SCGGGT--GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH--------TTHHHH
T ss_pred hhHHHH--HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH--------hhcccC
Confidence 001000 001112357888888888885443 1112 3478888888887777665321000 023457
Q ss_pred cccceeecccc
Q 037371 243 ARLEYLTMWRG 253 (330)
Q Consensus 243 ~~L~~L~l~~~ 253 (330)
++|+.|++++|
T Consensus 307 ~~L~~L~L~~n 317 (362)
T 2ra8_A 307 KHLKFINMKYN 317 (362)
T ss_dssp TTCSEEECCSB
T ss_pred CcceEEECCCC
Confidence 78888888776
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=6e-08 Score=87.61 Aligned_cols=166 Identities=17% Similarity=0.061 Sum_probs=109.1
Q ss_pred cccccEeecCCCCCcc-----cChhhh-cCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCccc
Q 037371 13 LVSLHHLDLSRTNITG-----LPQELK-ALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVL 86 (330)
Q Consensus 13 l~~L~~L~L~~~~~~~-----lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 86 (330)
+++|++|++++|.++. +...+. ...+|++|++++|.+.......+...+.+|++|++++|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l------------ 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL------------ 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC------------
Confidence 4689999999999873 222222 2378999999999774433333344577899999999988
Q ss_pred cCCchhhHHH----h-ccCcCcceeeEEEechhh--HHHhhccccccCceEEEEEEeCCCCCCCcc----ccccccccCc
Q 037371 87 CDDAEPLMKE----L-LGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWVECGTYTRPPFN----VLHLAYMENL 155 (330)
Q Consensus 87 ~~~~~~~~~~----l-~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~l~~l~~L 155 (330)
....... + ...++|++|++++|.+.. ...+........+|++|++..+. ..... ...+...++|
T Consensus 139 ---~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 139 ---GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp ---CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHHHHHHGGGCSCC
T ss_pred ---CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHHHHHHHhcCCCc
Confidence 3333333 3 357889999999998744 33444444456679999982222 12211 2346677899
Q ss_pred cEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc
Q 037371 156 QELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD 199 (330)
Q Consensus 156 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 199 (330)
+.|++++|.+++...... .......++|++|+|++|.+.+
T Consensus 214 ~~L~Ls~N~i~~~g~~~l----~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 214 QELNVAYNGAGDTAALAL----ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CEEECCSSCCCHHHHHHH----HHHHHHCSSCCEEECTTSSCCH
T ss_pred CeEECCCCCCCHHHHHHH----HHHHHhCCCCCEEeccCCCCCH
Confidence 999999888775432221 0011245789999999996655
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=5.7e-07 Score=71.66 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=15.2
Q ss_pred ccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCC
Q 037371 38 KLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRG 73 (330)
Q Consensus 38 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 73 (330)
+|+.||+++|.+...--.. ++++++|++|++++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCC
Confidence 3555555555432211111 4455555555555553
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=8.4e-07 Score=70.71 Aligned_cols=37 Identities=8% Similarity=0.009 Sum_probs=29.8
Q ss_pred CCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEec
Q 037371 61 FSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRS 112 (330)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 112 (330)
-.+|++||+++|.+ .......+..+++|++|+++++.
T Consensus 60 ~~~L~~LDLs~~~I---------------td~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 60 KYKIQAIDATDSCI---------------MSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCCEEEEEEESCCC---------------CGGGGGGGTTCSCCCEEEEESCT
T ss_pred CceEeEEeCcCCCc---------------cHHHHHHhcCCCCCCEEEeCCCC
Confidence 35799999999988 44666777889999999988875
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=2.6e-05 Score=70.76 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=21.6
Q ss_pred hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc
Q 037371 32 ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS 71 (330)
Q Consensus 32 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 71 (330)
.+..+.+|+.+.+..+ . ..++..++.++.+|+.+++..
T Consensus 157 aF~~c~~L~~i~l~~~-~-~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-M-ETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc-c-ceeccccccCCCCceEEEcCC
Confidence 4556666666666543 2 344444566666666666654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=2.7e-06 Score=68.79 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=33.5
Q ss_pred hhccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCC----CchhhhCCCCCCcEEEeccCCC
Q 037371 10 ISNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 10 l~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
+...+.|++|+|++| .+. .+...+...++|++|++++|.+... +.. ++...++|++|++++|.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcC
Confidence 344556666666666 554 2333445556666666666654221 111 133445566666666655
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.00 E-value=8.4e-05 Score=67.37 Aligned_cols=92 Identities=12% Similarity=0.165 Sum_probs=52.3
Q ss_pred CCCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccc
Q 037371 181 RNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSV 259 (330)
Q Consensus 181 ~~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 259 (330)
...+.+|+.+.+.+. .-..-.++.++++|+.+.+. ..+..++. ..+..+.+|+.+.+.. .++.+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~------------~aF~~c~~L~~i~lp~--~v~~I 325 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPE------------SVFAGCISLKSIDIPE--GITQI 325 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECT------------TTTTTCTTCCEEECCT--TCCEE
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCc------------eeecCCCCcCEEEeCC--cccEe
Confidence 345566777776554 11112345667777777775 33444533 2566677777777753 35555
Q ss_pred cCCCCC-CCCccEEEEccCCCCCCCCCCCcC
Q 037371 260 YPNPLP-FPKLKKIQVFHCRQLKKLPLNSSS 289 (330)
Q Consensus 260 ~~~~~~-~~~L~~L~i~~c~~L~~lp~~~~~ 289 (330)
...... +.+|+.+.+-. +++.+....+.
T Consensus 326 ~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~ 354 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPS--SVTKIPESAFS 354 (394)
T ss_dssp CTTTTTTCTTCCEEEECT--TCCBCCGGGGT
T ss_pred hHhHhhCCCCCCEEEECc--ccCEEhHhHhh
Confidence 444333 67777777743 45555554443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=1.2e-05 Score=68.74 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=16.8
Q ss_pred cccccEeecCCCCCcc---cChhhhcCcccceeccCCCCC
Q 037371 13 LVSLHHLDLSRTNITG---LPQELKALEKLRYLNLDHTRF 49 (330)
Q Consensus 13 l~~L~~L~L~~~~~~~---lp~~l~~l~~L~~L~l~~~~~ 49 (330)
+++|++|+|++|.+.. +|..+..+++|+.|+|++|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i 208 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 208 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc
Confidence 3445555555554442 223334445555555554444
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.00013 Score=66.20 Aligned_cols=216 Identities=14% Similarity=0.062 Sum_probs=129.4
Q ss_pred hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCccccccCcccc
Q 037371 9 GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEEEEGSVLC 87 (330)
Q Consensus 9 ~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 87 (330)
.|.+|.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ + ..++..++.++..|+.+.+..+..
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~------------- 220 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-L-KIIRDYCFAECILLENMEFPNSLY------------- 220 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCC-------------
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-c-eEeCchhhccccccceeecCCCce-------------
Confidence 4889999999999865 445554 5678999999999776 3 566666688999999988876443
Q ss_pred CCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccccccccCccEEEEEccCcce
Q 037371 88 DDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLHLAYMENLQELELGSSKLEE 167 (330)
Q Consensus 88 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 167 (330)
..........+|+.+.+.... ..+. ......+..++.+.+.... .......+..+..++.+......
T Consensus 221 ----~i~~~~~~~~~l~~i~ip~~~-~~i~--~~~f~~~~~l~~~~~~~~~---~~i~~~~F~~~~~l~~~~~~~~~--- 287 (394)
T 4fs7_A 221 ----YLGDFALSKTGVKNIIIPDSF-TELG--KSVFYGCTDLESISIQNNK---LRIGGSLFYNCSGLKKVIYGSVI--- 287 (394)
T ss_dssp ----EECTTTTTTCCCCEEEECTTC-CEEC--SSTTTTCSSCCEEEECCTT---CEECSCTTTTCTTCCEEEECSSE---
T ss_pred ----EeehhhcccCCCceEEECCCc-eecc--cccccccccceeEEcCCCc---ceeeccccccccccceeccCcee---
Confidence 111122334567766664321 1000 1122334556666662111 22233456667777766654221
Q ss_pred eeeCcccccCccCCCCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccc
Q 037371 168 MKIDSTEEVKKLFRNGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLE 246 (330)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 246 (330)
+. ......+.+|+.+.+.++ ....-.++.++.+|+.+.|.+ .++.++. ..+..+.+|+
T Consensus 288 i~--------~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~------------~aF~~c~~L~ 346 (394)
T 4fs7_A 288 VP--------EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY-LVEEIGK------------RSFRGCTSLS 346 (394)
T ss_dssp EC--------TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT-TCCEECT------------TTTTTCTTCC
T ss_pred ec--------cccccccccccccccccccceechhhhcCCCCCCEEEeCC-cccEEhH------------HhccCCCCCC
Confidence 11 112355677888888655 222233577788888888764 3555644 2666777888
Q ss_pred eeecccccccccccCCCCC-CCCccEEEEcc
Q 037371 247 YLTMWRGTNVKSVYPNPLP-FPKLKKIQVFH 276 (330)
Q Consensus 247 ~L~l~~~~~l~~l~~~~~~-~~~L~~L~i~~ 276 (330)
.+.+... ++.+...... +++|+.+.+..
T Consensus 347 ~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 347 NINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 8877542 5555544333 67788777653
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=4e-06 Score=71.67 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=52.9
Q ss_pred hccccccE--eecCCCCCcccChh----hhcCcccceeccCCCCCCC--CCchhhhCCCCCCcEEEeccCCCCCcccccc
Q 037371 11 SNLVSLHH--LDLSRTNITGLPQE----LKALEKLRYLNLDHTRFLS--IIPPQLISGFSKLEVLRLLSRGRWSVLEEEE 82 (330)
Q Consensus 11 ~~l~~L~~--L~L~~~~~~~lp~~----l~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 82 (330)
...+.|.. ++++.|....++.. ..++++|+.|++++|.+.+ .+|. .++.+++|+.|++++|.+ +.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i-~~----- 210 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL-KS----- 210 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCC-CS-----
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCcc-CC-----
Confidence 33344444 55555543333321 2467888888888887744 3333 366788888888888888 22
Q ss_pred CccccCCchhhHHHhccCcCcceeeEEEechh
Q 037371 83 GSVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 114 (330)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 114 (330)
. .....+..+ +|++|.+.+|.+.
T Consensus 211 -------~-~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 211 -------E-RELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp -------G-GGGGGGTTS-CCSEEECTTSTTG
T ss_pred -------c-hhhhhcccC-CcceEEccCCcCc
Confidence 1 112223333 7888888877754
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=2.5e-05 Score=63.02 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=72.9
Q ss_pred CChhhhccccccEeecCCCCCc-----ccChhhhcCcccceeccCCCCCCCC----CchhhhCCCCCCcEEEe--ccCCC
Q 037371 6 LPSGISNLVSLHHLDLSRTNIT-----GLPQELKALEKLRYLNLDHTRFLSI----IPPQLISGFSKLEVLRL--LSRGR 74 (330)
Q Consensus 6 lp~~l~~l~~L~~L~L~~~~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l--~~~~~ 74 (330)
+...+...++|++|+|++|.+. .+...+...+.|++|++++|.+... +.. ++...++|++|++ ++|.+
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE-ALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH-GGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH-HHHhCCCceEEEecCCCCCC
Confidence 3445667789999999999987 3555677788999999999977432 233 3778889999999 88888
Q ss_pred CCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh
Q 037371 75 WSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA 115 (330)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 115 (330)
.. .+ ...+...+...++|++|++++|.+..
T Consensus 136 -~~----~g------~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 136 -GN----NV------EMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp -CH----HH------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred -CH----HH------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 21 01 22355677788999999999987643
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.00077 Score=60.96 Aligned_cols=226 Identities=9% Similarity=0.058 Sum_probs=115.2
Q ss_pred CccCCh-hhhccccccEeecCCCCCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 3 LSKLPS-GISNLVSLHHLDLSRTNITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~L~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
+++++. .|..|..|+.+.+..+ +..++. .+..+.+|+.+.+..+ . ..++..++..+.+|+.+.+..+-. .
T Consensus 102 l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~-~~I~~~~F~~c~~L~~i~~~~~~~--~--- 173 (394)
T 4gt6_A 102 VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-V-TSVADGMFSYCYSLHTVTLPDSVT--A--- 173 (394)
T ss_dssp CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTTCC--E---
T ss_pred eeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-e-eeecccceecccccccccccceee--E---
Confidence 455554 3777888888777654 455544 5677888888888654 2 455555577888888888765321 0
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEE------------------------Ee
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWV------------------------EC 136 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l------------------------~~ 136 (330)
+ ....+. ..+|+.+.+..+...- . ......+..+..... .+
T Consensus 174 I-----------~~~aF~-~~~l~~i~ip~~~~~i-~--~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 174 I-----------EERAFT-GTALTQIHIPAKVTRI-G--TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY 238 (394)
T ss_dssp E-----------CTTTTT-TCCCSEEEECTTCCEE-C--TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC
T ss_pred e-----------cccccc-ccceeEEEECCccccc-c--cchhhhccccceecccccccccccceeeccccccccccccc
Confidence 1 011111 1234444433210000 0 000001111111111 00
Q ss_pred CCC----------CCCCccccccccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccc--cCccc
Q 037371 137 GTY----------TRPPFNVLHLAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKD--LTWLV 204 (330)
Q Consensus 137 ~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--l~~l~ 204 (330)
... .........|..+..|+.+.+..+ +..+. ......+.+|+.+.+... +.. -.++.
T Consensus 239 ~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~--------~~aF~~c~~L~~i~l~~~-i~~I~~~aF~ 308 (394)
T 4gt6_A 239 PSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDS-VVSIG--------TGAFMNCPALQDIEFSSR-ITELPESVFA 308 (394)
T ss_dssp CTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTT-CCEEC--------TTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ccccccceEEcCCcceEcccceeeecccccEEecccc-cceec--------CcccccccccccccCCCc-ccccCceeec
Confidence 000 001111234566677777766422 22232 222356677888887544 222 23577
Q ss_pred ccCCccEEEEecccccccccccccccccccccCccccCcccceeecccccccccccCCCC-CCCCccEEEEcc
Q 037371 205 FVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMWRGTNVKSVYPNPL-PFPKLKKIQVFH 276 (330)
Q Consensus 205 ~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~L~~L~i~~ 276 (330)
++.+|+.+.|.. .++.++. ..+..+.+|+.+.+-. .++.+..... .+.+|+.+.+.+
T Consensus 309 ~c~~L~~i~lp~-~v~~I~~------------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 309 GCISLKSIDIPE-GITQILD------------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEECCT-TCCEECT------------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCCCcCEEEeCC-cccEehH------------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 788888888864 3555544 2667777888887753 3444443332 367788777653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.0014 Score=58.72 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=33.7
Q ss_pred CCCCCccEEEEecc-cccccCcccccCCccEEEEecccccccccccccccccccccCccccCcccceeecc
Q 037371 182 NGFRSLNTVVLRSC-RGKDLTWLVFVQNLKQLNMQGFTMEEIISVDKLSDISEIIGSEHNIFARLEYLTMW 251 (330)
Q Consensus 182 ~~~~~L~~L~L~~~-~~~~l~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 251 (330)
..+.+|+.+.+... ....-..+.++.+|+.+.+.++.++.+.. ..+..+.+|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~------------~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEP------------RVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECT------------TTTTTCTTCCEEECC
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehh------------hhhcCCCCCCEEEcC
Confidence 44556666666444 11112245667777777776666666644 255666677777664
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.015 Score=51.99 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=90.2
Q ss_pred CccCCh-hhhccccccEeecCCCCCcc-------------cChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEE
Q 037371 3 LSKLPS-GISNLVSLHHLDLSRTNITG-------------LPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLR 68 (330)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~L~~~~~~~-------------lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~ 68 (330)
+..+.. .+..+..+....+....... ....+.....+..+.+... . ..+...++....+|+.+.
T Consensus 146 v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~f~~~~~l~~i~ 223 (379)
T 4h09_A 146 VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-V-KTVTAYGFSYGKNLKKIT 223 (379)
T ss_dssp CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-C-CEECTTTTTTCSSCSEEE
T ss_pred eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccc-e-eEEeecccccccccceee
Confidence 444554 37778888888877653221 1112334445555555433 1 223333367788888888
Q ss_pred eccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhhHHHhhccccccCceEEEEEEeCCCCCCCccccc
Q 037371 69 LLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFLKYPKLVSITQSVWVECGTYTRPPFNVLH 148 (330)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 148 (330)
+..+-. ......+..+..|+.+.+..+ + .......
T Consensus 224 ~~~~~~----------------~i~~~~f~~~~~L~~i~lp~~-v----------------------------~~I~~~a 258 (379)
T 4h09_A 224 ITSGVT----------------TLGDGAFYGMKALDEIAIPKN-V----------------------------TSIGSFL 258 (379)
T ss_dssp CCTTCC----------------EECTTTTTTCSSCCEEEECTT-C----------------------------CEECTTT
T ss_pred ecccee----------------EEccccccCCccceEEEcCCC-c----------------------------cEeCccc
Confidence 765321 122334556667776665421 0 1111123
Q ss_pred cccccCccEEEEEccCcceeeeCcccccCccCCCCCCCccEEEEecccccccC--cccccCCccEEEEeccccccccccc
Q 037371 149 LAYMENLQELELGSSKLEEMKIDSTEEVKKLFRNGFRSLNTVVLRSCRGKDLT--WLVFVQNLKQLNMQGFTMEEIISVD 226 (330)
Q Consensus 149 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~l~~~~~~~ 226 (330)
+..+.+|+.+.+.. .++.+.... ...+.+|+.+.+.++.++.+. ++.++.+|+.+.|.. .++.++.
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~a--------F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~-- 326 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLL--------CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQV-- 326 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTT--------TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECT--
T ss_pred cceeehhccccccc-cceeccccc--------cccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHH--
Confidence 44555555555531 233232221 245566666666555443332 455666666666653 2444433
Q ss_pred ccccccccccCccccCcccceeecc
Q 037371 227 KLSDISEIIGSEHNIFARLEYLTMW 251 (330)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~L~l~ 251 (330)
..+..+.+|+.+.+-
T Consensus 327 ----------~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 327 ----------YAFKNCKALSTISYP 341 (379)
T ss_dssp ----------TTTTTCTTCCCCCCC
T ss_pred ----------HHhhCCCCCCEEEEC
Confidence 255556666666664
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0042 Score=46.69 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=45.0
Q ss_pred cEeecCCCCCc--ccChhhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEeccCCC
Q 037371 17 HHLDLSRTNIT--GLPQELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLSRGR 74 (330)
Q Consensus 17 ~~L~L~~~~~~--~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 74 (330)
.+++-++++++ .+|..+. .+|++|+|++|.+ ..+|..++..+++|+.|++.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNL-TALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcC-CccChhhhhhccccCEEEecCCCe
Confidence 57888888887 8886432 3589999999977 677877788999999999999887
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.28 E-value=0.0052 Score=46.17 Aligned_cols=44 Identities=34% Similarity=0.495 Sum_probs=29.8
Q ss_pred cCChhhhccccccEeecCCCCCcccChh-hhcCcccceeccCCCCCC
Q 037371 5 KLPSGISNLVSLHHLDLSRTNITGLPQE-LKALEKLRYLNLDHTRFL 50 (330)
Q Consensus 5 ~lp~~l~~l~~L~~L~L~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~ 50 (330)
++|..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.+.
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6675544 3577777777777777663 466777777777777553
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.92 E-value=0.0057 Score=49.41 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=30.9
Q ss_pred hCCCCCCcEEEeccCCCCCccccccCccccCCchhhHHHhccCcCcceeeEEEechhh--HHHhhccccccCceEEEEE
Q 037371 58 ISGFSKLEVLRLLSRGRWSVLEEEEGSVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA--VQKFLKYPKLVSITQSVWV 134 (330)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l 134 (330)
+..-+.|+.|++++|.+.+. + ...+.+.+..-+.|++|+++.|.+.. ...+...+....+|++|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~-----g------a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDS-----E------ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHH-----H------HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred HhhCCCcCEEEccCCCCChH-----H------HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 44445566666666555100 0 12234444455556666666555422 3333333333444666665
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.68 E-value=0.11 Score=41.90 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=77.9
Q ss_pred hhccccccEeecCCC-CCc-----ccChhhhcCcccceeccCCCCCCCC---CchhhhCCCCCCcEEEeccCCCCCcccc
Q 037371 10 ISNLVSLHHLDLSRT-NIT-----GLPQELKALEKLRYLNLDHTRFLSI---IPPQLISGFSKLEVLRLLSRGRWSVLEE 80 (330)
Q Consensus 10 l~~l~~L~~L~L~~~-~~~-----~lp~~l~~l~~L~~L~l~~~~~~~~---~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 80 (330)
+.+-+.|++|+|+++ .+. .+-..+..-..|+.|+|++|.+... .-..++..-+.|++|++++|.+ ..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I-g~--- 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL-TP--- 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC-CH---
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC-CH---
Confidence 344578999999985 766 3445677788899999999977421 1122355678899999999998 22
Q ss_pred ccCccccCCchhhHHHhccCcCcceeeEEEe---ch--hhHHHhhccccccCceEEEEEE
Q 037371 81 EEGSVLCDDAEPLMKELLGLKHLNVLSWSFR---SS--LAVQKFLKYPKLVSITQSVWVE 135 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~---~~--~~~~~~~~~~~~~~~L~~L~l~ 135 (330)
.| ...+.+.+..-+.|++|+++++ .+ ..-..+......-..|.+|++.
T Consensus 113 -~G------a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 113 -EL------LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp -HH------HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred -HH------HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 11 3345667778888999999754 22 2233444444556678888873
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.79 E-value=22 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=27.7
Q ss_pred CCcccCh-hhhcCcccceeccCCCCCCCCCchhhhCCCCCCcEEEecc
Q 037371 25 NITGLPQ-ELKALEKLRYLNLDHTRFLSIIPPQLISGFSKLEVLRLLS 71 (330)
Q Consensus 25 ~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 71 (330)
.++.|.. .|..+.+|+.+.|..+ . +.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-I-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-S-SCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-h-heEcHHHHhccCCccEEEEcC
Confidence 3444443 4566777777777654 2 444444577777777777765
Done!