BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037374
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 165/477 (34%), Positives = 250/477 (52%), Gaps = 40/477 (8%)
Query: 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR----HSSDGFSRYMQI 63
HVV+ P P GH+N + KLA+LL G ITF+NTEY + R+++ + DGF+ +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF--- 66
Query: 64 PGLQLKTVTDGLPK---DHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNS-----PVNYI 115
+++ DGL D + D T L S+ E++T N PV +
Sbjct: 67 ---NFESIPDGLTPMEGDGDVSQDVPT-LCQSVRKNFLKPYCELLTRLNHSTNVPPVTCL 122
Query: 116 IADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPIKGTEDMDR--LI 173
++D MS I A E + + + + SAC+ + + + G +P K + L
Sbjct: 123 VSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLE 182
Query: 174 TNVTGMEGF--LRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF 231
T V + G R +D+ F R NP D+ L F + ++LNTF +LE +
Sbjct: 183 TKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVI 242
Query: 232 ------------IGPLNAHLKV--RIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSF 277
IGPL + LK +I + S LWK D C+ WL+ + SV+YV+F
Sbjct: 243 NALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNF 302
Query: 278 GSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGW 337
GS VM+ +QL+ F +GL N K FLW+IRPDL+ G G E +RG IA W
Sbjct: 303 GSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG--GSVIFSSEFTNEIADRGLIASW 360
Query: 338 VPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDI 397
PQ++VL H ++GGFL HCGWNST ESI AG+PM+CWP FADQ + RF+ W++G++I
Sbjct: 361 CPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI 420
Query: 398 KDLFDRNIVEKAVNDLMVKRKEEFM-ESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453
R + K +N+++ K + M + A ++ A+++ GG Y NL++++KD+
Sbjct: 421 DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 223/481 (46%), Gaps = 63/481 (13%)
Query: 7 AHVVIFPLPGVGHVNSMLKLAELLSH--AGIKITFLNTEY----YYDRVIRHSSDGFSRY 60
+ ++ P PG+GH+ S L+ A+LL++ + IT ++ + D I+ S
Sbjct: 10 SELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK------SVL 63
Query: 61 MQIPGLQLKTV--TDGLPKDHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIAD 118
P +QL + + P++ ++P+ + ++ L IP + + T ++ V ++ D
Sbjct: 64 ASQPQIQLIDLPEVEPPPQELLKSPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLD 121
Query: 119 GYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPIKGTEDMDRLITNVTG 178
+ IDV E GI F T + + N I + D D + N+ G
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE---EVFDDSDRDHQLLNIPG 178
Query: 179 MEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEG---------- 228
+ + LP C + + A R G+I+NTF DLE
Sbjct: 179 ISNQVPSNVLPDACFNKDGGYIAYYKLAERFR---DTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 229 ----PIF-IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAV- 282
PI+ +GPL P+ + L + WLD+QP +SV+++ FGS+ V
Sbjct: 236 EKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 283 MSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVE--ATKERGYIAGWVPQ 340
Q+ GL +S FLW S + PE +E + +G I GW PQ
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINS-RFVDEVWKLGLDIK- 398
EVLAHKA+GGF+ HCGWNS LES+ G+P++ WP +A+QQ+N+ R V E W +GL ++
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE-WGVGLGLRV 401
Query: 399 ------DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452
D+ +EK + DLM + + +M +++ +V +GGS ++ +L+ D
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
Query: 453 I 453
I
Sbjct: 461 I 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 223/481 (46%), Gaps = 63/481 (13%)
Query: 7 AHVVIFPLPGVGHVNSMLKLAELLSH--AGIKITFLNTEY----YYDRVIRHSSDGFSRY 60
+ ++ P PG+GH+ S L+ A+LL++ + IT ++ + D I+ S
Sbjct: 10 SELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK------SVL 63
Query: 61 MQIPGLQLKTV--TDGLPKDHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIAD 118
P +QL + + P++ ++P+ + ++ L IP + + T ++ V ++ D
Sbjct: 64 ASQPQIQLIDLPEVEPPPQELLKSPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLD 121
Query: 119 GYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPIKGTEDMDRLITNVTG 178
+ IDV E GI F T + + N I + D D + N+ G
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE---EVFDDSDRDHQLLNIPG 178
Query: 179 MEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEG---------- 228
+ + LP C + + A R G+I+NTF DLE
Sbjct: 179 ISNQVPSNVLPDACFNKDGGYIAYYKLAERFR---DTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 229 ----PIF-IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAV- 282
PI+ +GPL P+ + L + WLD+QP +SV+++ FGS+ V
Sbjct: 236 EKIPPIYAVGPLLDLKGQPNPKLDQAQHDL------ILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 283 MSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVE--ATKERGYIAGWVPQ 340
Q+ GL +S FLW S + PE +E + +G I GW PQ
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINS-RFVDEVWKLGLDIK- 398
EVLAHKA+GGF+ HCGWNS LES+ G+P++ WP +A+QQ+N+ R V E W +GL ++
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE-WGVGLGLRV 401
Query: 399 ------DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452
D+ +EK + DLM + + +M +++ +V +GGS ++ +L+ D
Sbjct: 402 DYRKGSDVVAAEEIEKGLKDLM-DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460
Query: 453 I 453
I
Sbjct: 461 I 461
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 195/399 (48%), Gaps = 39/399 (9%)
Query: 71 VTDGLPKDHPRTPDKFTELIDSLNLAIPPLLKE----MVTDSNSPVNYIIADGYMSHAID 126
++DG+P+ + + E I+ A P ++ V ++ PV+ ++AD ++ A D
Sbjct: 69 ISDGVPEGYVFA-GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAAD 127
Query: 127 VAREVGISIIYFCTVSACAFWSFHCIPNIIIA-GELPIKGTEDMDRLITNVTGMEGFLRC 185
+A E+G++ + F T + + I I G I+G ED L+ + GM +R
Sbjct: 128 MAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRED--ELLNFIPGMSK-VRF 184
Query: 186 RDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF------------IG 233
RDL N L + R ++ +A + +N+FE+L+ + IG
Sbjct: 185 RDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIG 244
Query: 234 PLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYY 293
P N + P +++G C+ WL ++ SV+Y+SFG+V +++
Sbjct: 245 PFNL---ITPPPVVPNTTG-------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSE 294
Query: 294 GLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFL 353
L S+ F+W +R +PE +E T+ G + W PQ EVLAH+AVG F+
Sbjct: 295 ALEASRVPFIWSLR------DKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFV 348
Query: 354 IHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVND 412
HCGWNS ES+ G+P+IC P F DQ++N R V++V ++G+ I+ +F ++ + +
Sbjct: 349 THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQ 408
Query: 413 LMVKRK-EEFMESADQMANLAKKSVNEGGSLYCNLDRLV 450
++ + K ++ E+ + A ++V GS N LV
Sbjct: 409 ILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLV 447
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 129/465 (27%), Positives = 212/465 (45%), Gaps = 93/465 (20%)
Query: 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSH-AGIKITFL----NTEYYYDRVIRHSSD 55
ME+ HV I P PG+GH+ +++ A+ L H G+ +TF+ R + S
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 56 GFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYI 115
+ +P + L ++ R + + + N + + V P +
Sbjct: 61 SSISSVFLPPVDLTDLSSST-----RIESRISLTVTRSNPELRKVFDSFVEGGRLPTALV 115
Query: 116 IADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNI---------------IIAGE 160
+ D + + A DVA E + F +A F +P + ++ G
Sbjct: 116 V-DLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGC 174
Query: 161 LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLIL 220
+P+ G + +D P+ R ++ L T+ A G+++
Sbjct: 175 VPVAGKDFLD------------------PAQDRKDDAYKWLL----HNTKRYKEAEGILV 212
Query: 221 NTFEDLEG--------------PIF-IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLD 265
NTF +LE P++ +GPL ++ + ++T S C+ WLD
Sbjct: 213 NTFFELEPNAIKALQEPGLDKPPVYPVGPL-VNIGKQEAKQTEESE--------CLKWLD 263
Query: 266 KQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIR-PDLISGK---DGESQ-- 319
QP SV+YVSFGS ++ +QL GL +S+ FLWVIR P I+ D SQ
Sbjct: 264 NQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTD 323
Query: 320 ----IPEEVVEATKERGY-IAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374
+P +E TK+RG+ I W PQ +VLAH + GGFL HCGWNSTLES+++G+P+I W
Sbjct: 324 PLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAW 383
Query: 375 PSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKE 419
P +A+Q++N+ + E DI+ + +A +D +V+R+E
Sbjct: 384 PLYAEQKMNAVLLSE------DIR----AALRPRAGDDGLVRREE 418
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 116/467 (24%), Positives = 204/467 (43%), Gaps = 40/467 (8%)
Query: 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRY 60
M + HV + P H +L L + ++ K+T + + + FSR
Sbjct: 8 MNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVT-----FSFFCTTTTNDTLFSRS 62
Query: 61 MQ-IPGLQLKTVTDGLPKDH-----PRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNY 114
+ +P ++ V DGLPK + PR P I ++ ++ E V ++ +
Sbjct: 63 NEFLPNIKYYNVHDGLPKGYVSSGNPREP--IFLFIKAMQENFKHVIDEAVAETGKNITC 120
Query: 115 IIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII--IAGELPIKGTEDMDRL 172
++ D + D+A E+ + T + + H ++I G + + +D L
Sbjct: 121 LVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT-HVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 173 ITNVTGMEGF--LRCRDLPSFCRVNNPMDLQLLLFARETRLSV-RAGGLILNTFEDLEGP 229
GF L+ DLP V +D+ + L + RA + +N+F + P
Sbjct: 180 -------PGFPELKASDLPE--GVIKDIDVPFATMLHKMGLELPRANAVAINSFATIH-P 229
Query: 230 IFIGPLNAHLKVRI---PEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRD 286
+ LN+ K+ + P + + C+ WLD+ SV+Y+SFGSV
Sbjct: 230 LIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPH 289
Query: 287 QLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAH 346
+L L F+W R D + ++P+ +E TK +G I W PQ E+L H
Sbjct: 290 ELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKIVAWAPQVEILKH 343
Query: 347 KAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKD-LFDRNI 405
+VG FL H GWNS LE I+ G+PMI P F DQ +N+ + V ++G+ + + + +
Sbjct: 344 SSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKES 403
Query: 406 VEKAVNDLMVKRKEEFM-ESADQMANLAKKSVNEGGSLYCNLDRLVK 451
++KA+ M K M + ++ A K+V + G+ + L++
Sbjct: 404 IKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQIN 383
W+PQ ++L H F+ H G N E+I G+P + P FADQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLD 396
WVPQ ++L + F+ H G ST+E++ +PM+ P A+Q +N+ + + +LGL
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA---ERIVELGLG 366
Query: 397 IKDLFDRNIVEK 408
D+ EK
Sbjct: 367 RHIPRDQVTAEK 378
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49
P H+ F +PG GHVN L + + L G ++++ T+ + +V
Sbjct: 12 PRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQV 55
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGL 395
W+P VLAH L H + LE+ AG+P++ P FA + S + V +LGL
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPS--AERVIELGL 342
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49
H++ + G GHV L L L+ G +IT++ T + D V
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEV 47
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 262 AWLD-KQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQI 320
AWL + + ++Y++ G+ + + + L GL L P L GE +
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGE--V 290
Query: 321 PEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQ 380
P V + WVPQ +L H V + H G +TL ++ AG+P + +P D
Sbjct: 291 PANV--------RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLD 396
WVPQ +L + F+ H G + E + PMI P DQ N+ D + LG+
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA---DMLQGLGVA 344
Query: 397 IKDLFDRNIVEKAVNDLMVKRKEEFM---ESADQMANLAKKSVNEGGS 441
K E+A DL+ + + E A ++ + + EGG+
Sbjct: 345 RK-----LATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGT 387
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPG 65
PAH+ +F + GHVN L++ L G ++T+ + D+V + +PG
Sbjct: 7 PAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTLPG 66
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 324 VVEATKERGYIAGWVPQEEVLAHK-AVGGFLIHCGWNSTLESIMAG--MPMICWPSF 377
+++ +ERG +A V EE LA + A G ++CG++ T +S+ G +P++C F
Sbjct: 2 LIKQLQERGLVA-QVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 57
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 324 VVEATKERGYIAGWVPQEEVLAHK-AVGGFLIHCGWNSTLESIMAG--MPMICWPSF 377
+++ +ERG +A V EE LA + A G ++CG++ T +S+ G +P++C F
Sbjct: 6 LIKQLQERGLVA-QVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRF 61
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEV 390
WVP +VL V + H G + E++ G P++ P D Q +R VD++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 337 WVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEV 390
WVP +VL V + H G + E++ G P++ P D Q +R VD++
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQL 355
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 324 VVEATKERGYIAGWVPQEEVLAHK-AVGGFLIHCGWNSTLESIMAG--MPMICWPSF 377
+++ +ERG +A V EE LA + A G + CG++ T +S+ G +P++C F
Sbjct: 5 LIKQLQERGLVA-QVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 60
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 324 VVEATKERGYIAGWVPQEEVLAHK-AVGGFLIHCGWNSTLESIMAG--MPMICWPSF 377
+++ +ERG +A V EE LA + A G + CG++ T +S+ G +P++C F
Sbjct: 6 LIKQLQERGLVA-QVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 61
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 324 VVEATKERGYIAGWVPQEEVLAHK-AVGGFLIHCGWNSTLESIMAG--MPMICWPSF 377
+++ +ERG +A V EE LA + A G + CG++ T +S+ G +P++C F
Sbjct: 2 LIKQLQERGLVA-QVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRF 57
>pdb|1E6Y|B Chain B, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|E Chain E, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 433
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 269 KQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGE-SQIPEEVVEA 327
+QS I+ G+V + R QL+ Y +N+ N +++ + GKDG + E VV
Sbjct: 215 EQSGIFEMGGAVGMFERHQLLGLAYQGLNANNLLYDIVKEN---GKDGTIGTVIESVVRR 271
Query: 328 TKERGYIA 335
E G I+
Sbjct: 272 AIEAGIIS 279
>pdb|3KFF|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Sec-Butyl-4,5- Dihydrothiazole
pdb|3KFG|A Chain A, Major Mouse Urinary Protein Iv Complexed With 2-Heptanone
pdb|3KFH|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Ethylhexanol
pdb|3KFI|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2,5-Dimethylpyrazine
Length = 162
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 265 DKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEV 324
+K + SV+Y F + ++ D + L+N K+G + + D S I E+
Sbjct: 75 EKAGEYSVMYDGFNTFTILKTDYDNYIMFHLINEKDGKTFQLMELYGRKADLNSDIKEKF 134
Query: 325 VEATKERGYI 334
V+ +E G I
Sbjct: 135 VKLCEEHGII 144
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 296 VNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLA 345
++S+NGF + P+ +G D + I +++V + GY +V E+
Sbjct: 365 ISSRNGFEMIWDPNGWTGTDNDFSIKQDIVGINEWSGYSGSFVQHPELTG 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,966,186
Number of Sequences: 62578
Number of extensions: 588681
Number of successful extensions: 1540
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1506
Number of HSP's gapped (non-prelim): 35
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)