Query 037374
Match_columns 463
No_of_seqs 124 out of 1225
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 1.3E-61 2.8E-66 476.0 44.6 428 1-454 1-448 (448)
2 PLN02555 limonoid glucosyltran 100.0 1E-61 2.3E-66 476.7 43.4 444 1-456 1-470 (480)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.3E-61 2.9E-66 474.3 43.1 430 1-455 1-450 (451)
4 PLN02173 UDP-glucosyl transfer 100.0 1.9E-60 4.2E-65 463.9 41.7 421 1-454 1-447 (449)
5 PLN02210 UDP-glucosyl transfer 100.0 8.1E-60 1.8E-64 463.7 42.3 424 5-454 7-454 (456)
6 PLN02207 UDP-glycosyltransfera 100.0 1.6E-59 3.5E-64 459.1 42.2 428 6-455 3-465 (468)
7 PLN02448 UDP-glycosyltransfera 100.0 1.5E-59 3.2E-64 465.1 42.2 427 5-457 9-459 (459)
8 PLN02152 indole-3-acetate beta 100.0 2.2E-59 4.8E-64 457.2 42.2 424 6-453 3-454 (455)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.7E-59 1.7E-63 458.0 42.8 441 5-458 8-474 (477)
10 PLN02670 transferase, transfer 100.0 2.1E-58 4.5E-63 451.7 40.1 437 1-457 1-467 (472)
11 PLN02992 coniferyl-alcohol glu 100.0 5.1E-58 1.1E-62 449.3 41.9 420 6-455 5-469 (481)
12 PLN02554 UDP-glycosyltransfera 100.0 4.9E-58 1.1E-62 455.8 40.9 431 6-455 2-478 (481)
13 PLN00164 glucosyltransferase; 100.0 1.5E-57 3.3E-62 450.4 42.8 436 5-462 2-480 (480)
14 PLN02534 UDP-glycosyltransfera 100.0 2E-57 4.3E-62 446.9 41.7 438 5-457 7-488 (491)
15 PLN03007 UDP-glucosyltransfera 100.0 4E-57 8.7E-62 449.9 40.9 433 6-455 5-480 (482)
16 PLN03015 UDP-glucosyl transfer 100.0 1.3E-56 2.9E-61 436.7 43.1 428 5-453 2-466 (470)
17 PLN03004 UDP-glycosyltransfera 100.0 3.6E-57 7.8E-62 441.2 38.2 419 6-444 3-450 (451)
18 PLN02208 glycosyltransferase f 100.0 2.8E-56 6.1E-61 435.7 39.0 405 5-456 3-440 (442)
19 PLN02167 UDP-glycosyltransfera 100.0 3.9E-56 8.5E-61 441.5 38.6 433 5-455 2-472 (475)
20 PLN02764 glycosyltransferase f 100.0 1.4E-55 3.1E-60 428.2 41.5 415 1-456 1-446 (453)
21 PLN00414 glycosyltransferase f 100.0 8.3E-55 1.8E-59 425.9 39.6 407 5-455 3-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.3E-50 7.2E-55 400.7 28.9 408 6-457 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-51 2.8E-56 418.4 2.8 400 8-456 2-444 (500)
24 cd03784 GT1_Gtf_like This fami 100.0 9.1E-43 2E-47 344.3 26.4 372 7-452 1-400 (401)
25 TIGR01426 MGT glycosyltransfer 100.0 1.1E-41 2.3E-46 335.1 32.5 376 12-453 1-389 (392)
26 COG1819 Glycosyl transferases, 100.0 3.2E-42 7E-47 334.5 23.4 383 6-456 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.1E-39 4.5E-44 329.1 20.9 418 6-455 5-455 (496)
28 PRK12446 undecaprenyldiphospho 99.9 1.2E-25 2.7E-30 215.8 28.2 314 7-427 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.2E-24 2.7E-29 208.1 26.2 298 7-413 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 5.5E-23 1.2E-27 195.0 28.8 304 7-416 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.2E-22 2.7E-27 193.8 24.0 305 8-422 1-318 (321)
32 PRK00726 murG undecaprenyldiph 99.8 3.4E-18 7.4E-23 166.3 28.7 318 6-432 1-338 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.6E-17 9.9E-22 158.0 25.0 313 8-426 1-332 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.3E-15 2.8E-20 147.7 25.7 88 339-434 243-334 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 3.2E-16 7E-21 152.9 20.4 171 268-450 189-383 (385)
36 COG4671 Predicted glycosyl tra 99.7 1E-15 2.2E-20 138.5 21.6 325 3-415 6-364 (400)
37 PRK13609 diacylglycerol glucos 99.7 3.6E-15 7.9E-20 146.3 19.3 139 269-425 201-345 (380)
38 TIGR03590 PseG pseudaminic aci 99.6 3.2E-14 7E-19 132.4 21.7 104 270-386 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 1.2E-13 2.6E-18 135.6 21.2 105 340-451 255-373 (380)
40 PRK13608 diacylglycerol glucos 99.6 1.4E-13 3E-18 135.1 18.2 164 268-453 200-369 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 5.1E-16 1.1E-20 133.7 -1.4 135 272-416 1-144 (167)
42 PF03033 Glyco_transf_28: Glyc 99.4 2.4E-13 5.1E-18 113.3 4.4 121 9-144 1-133 (139)
43 TIGR03492 conserved hypothetic 99.4 1.9E-10 4.2E-15 112.4 24.5 141 269-426 204-372 (396)
44 COG3980 spsG Spore coat polysa 99.4 3E-10 6.5E-15 100.3 21.5 146 269-430 157-305 (318)
45 PLN02605 monogalactosyldiacylg 99.3 2.6E-10 5.6E-15 111.9 22.9 96 330-435 265-362 (382)
46 cd03814 GT1_like_2 This family 99.3 3.3E-09 7.1E-14 102.9 27.6 111 328-452 245-362 (364)
47 PLN02871 UDP-sulfoquinovose:DA 99.2 3.6E-08 7.8E-13 99.4 30.4 130 272-423 264-405 (465)
48 cd03823 GT1_ExpE7_like This fa 99.2 1.5E-08 3.2E-13 98.1 26.2 87 329-425 242-336 (359)
49 cd03808 GT1_cap1E_like This fa 99.1 9E-08 2E-12 92.2 27.2 87 329-425 245-336 (359)
50 cd03794 GT1_wbuB_like This fam 99.1 4E-08 8.7E-13 95.9 24.6 138 269-426 218-373 (394)
51 PRK10307 putative glycosyl tra 99.0 3E-07 6.5E-12 91.3 28.8 81 330-416 284-373 (412)
52 cd04962 GT1_like_5 This family 99.0 2.5E-07 5.4E-12 90.4 27.0 84 329-422 252-340 (371)
53 cd03818 GT1_ExpC_like This fam 99.0 9E-07 1.9E-11 87.4 31.0 84 330-423 281-371 (396)
54 PF04007 DUF354: Protein of un 99.0 2.2E-07 4.7E-12 87.7 24.7 301 7-414 1-308 (335)
55 cd03801 GT1_YqgM_like This fam 99.0 6.4E-07 1.4E-11 86.4 28.2 88 328-425 254-348 (374)
56 cd03800 GT1_Sucrose_synthase T 98.9 7.2E-07 1.6E-11 88.0 26.1 80 329-416 282-368 (398)
57 cd03816 GT1_ALG1_like This fam 98.9 5.5E-07 1.2E-11 89.4 25.1 77 330-416 294-381 (415)
58 cd03817 GT1_UGDG_like This fam 98.9 1.6E-06 3.4E-11 84.2 27.7 79 329-416 258-343 (374)
59 TIGR00236 wecB UDP-N-acetylglu 98.9 1.9E-07 4.1E-12 91.1 21.2 136 270-426 197-342 (365)
60 PRK14089 ipid-A-disaccharide s 98.9 2.3E-07 4.9E-12 88.4 20.1 145 270-432 167-332 (347)
61 cd03825 GT1_wcfI_like This fam 98.9 4.8E-06 1E-10 80.9 28.5 81 328-416 242-330 (365)
62 cd03795 GT1_like_4 This family 98.8 1.4E-06 3E-11 84.5 24.5 132 271-423 191-337 (357)
63 cd03820 GT1_amsD_like This fam 98.8 3.5E-06 7.6E-11 80.7 26.9 96 329-434 234-335 (348)
64 TIGR03449 mycothiol_MshA UDP-N 98.8 2.6E-06 5.7E-11 84.4 26.4 86 329-424 282-374 (405)
65 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 1.5E-07 3.2E-12 91.8 17.1 137 269-422 197-341 (363)
66 cd03796 GT1_PIG-A_like This fa 98.8 1.2E-06 2.5E-11 86.7 23.6 78 329-416 249-333 (398)
67 cd03798 GT1_wlbH_like This fam 98.8 2.4E-06 5.3E-11 82.7 25.6 80 329-416 258-344 (377)
68 cd03821 GT1_Bme6_like This fam 98.8 6.6E-06 1.4E-10 79.8 27.8 87 329-427 261-354 (375)
69 cd05844 GT1_like_7 Glycosyltra 98.8 5.5E-06 1.2E-10 80.7 25.4 84 329-422 244-340 (367)
70 PRK05749 3-deoxy-D-manno-octul 98.7 1.8E-06 3.9E-11 86.1 22.0 86 331-424 303-394 (425)
71 cd03802 GT1_AviGT4_like This f 98.7 2E-06 4.4E-11 82.6 21.1 125 273-416 173-308 (335)
72 PRK09922 UDP-D-galactose:(gluc 98.7 1.8E-06 3.9E-11 84.1 20.0 164 271-455 180-358 (359)
73 cd03805 GT1_ALG2_like This fam 98.7 6.1E-06 1.3E-10 81.3 23.1 79 329-416 279-364 (392)
74 TIGR02468 sucrsPsyn_pln sucros 98.7 9.3E-05 2E-09 79.2 32.1 88 329-426 547-645 (1050)
75 cd04951 GT1_WbdM_like This fam 98.6 1.9E-05 4E-10 76.6 24.8 94 329-434 244-343 (360)
76 cd03799 GT1_amsK_like This is 98.6 1.6E-05 3.6E-10 76.9 24.0 80 329-416 235-327 (355)
77 cd03819 GT1_WavL_like This fam 98.6 6.9E-05 1.5E-09 72.5 28.2 79 329-415 245-329 (355)
78 cd03807 GT1_WbnK_like This fam 98.6 7.4E-05 1.6E-09 72.1 27.9 78 329-416 250-332 (365)
79 cd03811 GT1_WabH_like This fam 98.6 1E-05 2.3E-10 77.5 20.9 80 329-416 245-332 (353)
80 KOG3349 Predicted glycosyltran 98.5 7.6E-07 1.6E-11 71.2 9.3 116 270-395 3-130 (170)
81 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00045 9.7E-09 69.2 31.7 84 329-422 316-410 (439)
82 cd04955 GT1_like_6 This family 98.5 5.9E-05 1.3E-09 73.2 23.7 123 274-416 196-330 (363)
83 TIGR02470 sucr_synth sucrose s 98.5 0.00038 8.3E-09 72.8 30.2 78 329-414 618-707 (784)
84 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1.9E-05 4E-10 76.7 19.6 131 269-415 200-338 (365)
85 cd03822 GT1_ecORF704_like This 98.5 8.2E-05 1.8E-09 72.1 23.9 80 328-416 245-334 (366)
86 PRK01021 lpxB lipid-A-disaccha 98.5 9.7E-05 2.1E-09 74.3 24.3 154 268-436 411-589 (608)
87 PLN00142 sucrose synthase 98.4 7.5E-05 1.6E-09 78.1 24.3 88 329-426 641-744 (815)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.4 0.0007 1.5E-08 64.6 26.9 97 330-433 300-401 (419)
89 PF02684 LpxB: Lipid-A-disacch 98.4 9.8E-05 2.1E-09 71.0 21.6 165 267-442 181-364 (373)
90 cd03812 GT1_CapH_like This fam 98.3 0.00011 2.4E-09 71.2 21.2 87 329-426 248-339 (358)
91 cd03809 GT1_mtfB_like This fam 98.3 0.0001 2.2E-09 71.3 20.9 92 328-431 251-349 (365)
92 PRK00654 glgA glycogen synthas 98.3 0.00049 1.1E-08 69.4 25.9 132 271-415 282-427 (466)
93 COG0381 WecB UDP-N-acetylgluco 98.3 0.00015 3.2E-09 68.5 20.2 142 267-428 201-351 (383)
94 PLN02275 transferase, transfer 98.3 0.00045 9.8E-09 67.5 24.8 75 330-414 286-371 (371)
95 PLN02846 digalactosyldiacylgly 98.3 0.001 2.2E-08 65.9 26.9 72 334-416 288-363 (462)
96 TIGR03088 stp2 sugar transfera 98.2 0.00043 9.3E-09 67.7 23.1 79 330-416 255-338 (374)
97 TIGR03087 stp1 sugar transfera 98.2 0.00012 2.6E-09 72.3 18.4 83 329-423 279-367 (397)
98 TIGR02149 glgA_Coryne glycogen 98.2 0.0018 4E-08 63.6 26.8 130 272-416 202-352 (388)
99 PF02350 Epimerase_2: UDP-N-ac 98.1 7.1E-06 1.5E-10 78.9 7.6 139 268-427 178-327 (346)
100 PLN02949 transferase, transfer 98.1 0.004 8.7E-08 62.4 26.4 95 329-431 334-440 (463)
101 TIGR02095 glgA glycogen/starch 98.1 0.0036 7.7E-08 63.4 26.2 82 327-415 343-436 (473)
102 PRK15179 Vi polysaccharide bio 98.0 0.011 2.3E-07 62.0 28.2 92 329-429 573-674 (694)
103 cd03791 GT1_Glycogen_synthase_ 98.0 0.0049 1.1E-07 62.4 25.4 84 329-416 350-442 (476)
104 cd03792 GT1_Trehalose_phosphor 98.0 0.0094 2E-07 58.2 26.4 84 329-424 251-343 (372)
105 COG0763 LpxB Lipid A disacchar 97.9 0.0052 1.1E-07 58.2 22.4 170 267-453 185-379 (381)
106 PF13844 Glyco_transf_41: Glyc 97.9 0.00063 1.4E-08 66.9 16.8 143 268-425 282-437 (468)
107 COG5017 Uncharacterized conser 97.8 0.0003 6.5E-09 55.5 10.3 107 273-398 2-122 (161)
108 PF00534 Glycos_transf_1: Glyc 97.8 0.00033 7E-09 60.2 10.9 90 328-427 71-167 (172)
109 COG1817 Uncharacterized protei 97.7 0.017 3.8E-07 52.8 21.7 108 14-143 7-115 (346)
110 cd03806 GT1_ALG11_like This fa 97.7 0.0068 1.5E-07 60.3 21.5 79 329-416 304-392 (419)
111 cd04950 GT1_like_1 Glycosyltra 97.7 0.032 6.9E-07 54.6 25.7 75 330-416 254-340 (373)
112 PLN02316 synthase/transferase 97.6 0.1 2.2E-06 56.8 29.3 84 329-416 899-998 (1036)
113 PRK15484 lipopolysaccharide 1, 97.6 0.0027 5.8E-08 62.3 16.5 85 328-421 255-347 (380)
114 PRK15427 colanic acid biosynth 97.6 0.0021 4.5E-08 63.7 15.4 83 329-421 278-374 (406)
115 cd03804 GT1_wbaZ_like This fam 97.6 0.00033 7.1E-09 67.9 9.2 123 274-416 198-326 (351)
116 PRK09814 beta-1,6-galactofuran 97.6 0.00049 1.1E-08 66.2 10.2 112 328-452 205-332 (333)
117 cd04946 GT1_AmsK_like This fam 97.5 0.0023 4.9E-08 63.4 14.8 82 330-416 289-377 (407)
118 PRK10125 putative glycosyl tra 97.4 0.19 4E-06 49.8 25.9 103 286-412 256-367 (405)
119 PF06722 DUF1205: Protein of u 97.0 0.00096 2.1E-08 50.8 3.9 64 259-333 29-97 (97)
120 PRK10916 ADP-heptose:LPS hepto 96.9 0.3 6.5E-06 47.2 22.1 96 269-374 179-286 (348)
121 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0038 8.3E-08 51.0 7.6 80 329-416 52-135 (135)
122 PF13477 Glyco_trans_4_2: Glyc 96.9 0.013 2.7E-07 48.2 10.6 103 8-140 1-107 (139)
123 PRK10422 lipopolysaccharide co 96.9 0.16 3.6E-06 49.1 19.7 98 269-374 182-287 (352)
124 TIGR02918 accessory Sec system 96.8 0.017 3.6E-07 58.7 12.6 98 329-432 375-484 (500)
125 cd03813 GT1_like_3 This family 96.7 0.063 1.4E-06 54.4 16.2 87 329-425 353-449 (475)
126 COG0859 RfaF ADP-heptose:LPS h 96.7 0.17 3.6E-06 48.7 17.9 95 270-374 175-276 (334)
127 TIGR02201 heptsyl_trn_III lipo 96.7 0.18 3.9E-06 48.6 18.2 98 269-374 180-285 (344)
128 cd04949 GT1_gtfA_like This fam 96.6 0.025 5.5E-07 55.1 12.2 83 329-416 260-345 (372)
129 PRK10017 colanic acid biosynth 96.6 0.075 1.6E-06 52.6 15.0 180 262-455 226-424 (426)
130 cd01635 Glycosyltransferase_GT 96.5 0.5 1.1E-05 41.8 19.2 48 329-378 160-215 (229)
131 PHA01633 putative glycosyl tra 96.5 0.036 7.7E-07 52.9 11.8 85 328-415 199-306 (335)
132 KOG4626 O-linked N-acetylgluco 96.2 0.081 1.8E-06 52.9 12.3 122 268-399 756-889 (966)
133 PLN02501 digalactosyldiacylgly 96.2 0.94 2E-05 47.1 20.2 75 331-416 602-681 (794)
134 TIGR02195 heptsyl_trn_II lipop 96.2 0.61 1.3E-05 44.7 18.6 96 269-374 173-276 (334)
135 TIGR02193 heptsyl_trn_I lipopo 96.1 0.54 1.2E-05 44.8 17.8 130 269-414 178-319 (319)
136 PF13579 Glyco_trans_4_4: Glyc 95.9 0.019 4.2E-07 47.9 6.1 97 22-140 6-104 (160)
137 PRK15490 Vi polysaccharide bio 95.9 0.29 6.2E-06 49.6 14.9 74 329-410 454-532 (578)
138 cd03789 GT1_LPS_heptosyltransf 95.8 1.1 2.5E-05 41.6 18.0 43 8-50 1-45 (279)
139 COG3914 Spy Predicted O-linked 95.6 0.35 7.5E-06 48.3 13.8 132 268-410 427-572 (620)
140 PRK10964 ADP-heptose:LPS hepto 95.5 2 4.4E-05 40.9 18.7 132 270-415 178-321 (322)
141 PRK14098 glycogen synthase; Pr 95.4 0.25 5.4E-06 50.2 12.6 83 327-415 359-450 (489)
142 PF01975 SurE: Survival protei 94.7 0.21 4.5E-06 43.7 8.6 38 7-45 1-38 (196)
143 PF13524 Glyco_trans_1_2: Glyc 94.6 0.28 6.1E-06 36.9 8.3 82 355-450 9-91 (92)
144 PF13439 Glyco_transf_4: Glyco 94.1 0.25 5.5E-06 41.8 7.9 101 16-143 11-112 (177)
145 PHA01630 putative group 1 glyc 93.9 1.6 3.5E-05 41.8 13.7 108 336-453 196-328 (331)
146 PF08660 Alg14: Oligosaccharid 93.7 0.37 8E-06 41.1 8.0 110 12-138 3-127 (170)
147 PF12000 Glyco_trans_4_3: Gkyc 92.8 0.88 1.9E-05 38.7 8.8 39 101-140 57-96 (171)
148 TIGR02400 trehalose_OtsA alpha 92.6 0.83 1.8E-05 45.8 9.8 103 336-454 342-455 (456)
149 PRK02261 methylaspartate mutas 90.7 0.65 1.4E-05 38.0 5.5 48 4-51 1-48 (137)
150 TIGR00715 precor6x_red precorr 90.3 2.4 5.1E-05 38.9 9.5 92 7-138 1-98 (256)
151 COG1618 Predicted nucleotide k 90.1 2.2 4.9E-05 35.6 8.0 101 6-122 5-111 (179)
152 cd01425 RPS2 Ribosomal protein 90.0 1.1 2.3E-05 39.2 6.7 113 22-143 44-161 (193)
153 PRK13932 stationary phase surv 89.1 7.9 0.00017 35.3 11.7 39 5-45 4-42 (257)
154 PRK14099 glycogen synthase; Pr 88.9 5.8 0.00013 40.3 12.0 91 328-423 348-452 (485)
155 PRK13933 stationary phase surv 88.9 8.6 0.00019 35.1 11.7 37 7-45 1-37 (253)
156 cd03788 GT1_TPS Trehalose-6-Ph 88.7 1.3 2.8E-05 44.7 7.1 104 335-453 346-459 (460)
157 PF06258 Mito_fiss_Elm1: Mitoc 88.2 6 0.00013 37.4 10.8 117 269-398 145-281 (311)
158 COG0052 RpsB Ribosomal protein 88.1 2.6 5.6E-05 37.7 7.6 37 109-145 154-192 (252)
159 KOG1111 N-acetylglucosaminyltr 87.9 26 0.00055 33.5 22.9 45 328-374 250-301 (426)
160 COG4370 Uncharacterized protei 87.7 1.7 3.7E-05 39.9 6.4 94 330-429 294-390 (412)
161 PF02951 GSH-S_N: Prokaryotic 87.5 0.94 2E-05 35.9 4.2 38 7-44 1-41 (119)
162 COG2894 MinD Septum formation 87.1 1.7 3.6E-05 38.2 5.7 42 6-47 1-44 (272)
163 COG0496 SurE Predicted acid ph 87.1 10 0.00023 34.3 11.0 112 7-141 1-126 (252)
164 PRK12311 rpsB 30S ribosomal pr 86.2 2.3 5.1E-05 40.1 6.7 36 109-144 150-187 (326)
165 TIGR00087 surE 5'/3'-nucleotid 86.1 15 0.00032 33.4 11.6 36 7-45 1-37 (244)
166 PLN02939 transferase, transfer 86.0 17 0.00037 39.6 13.7 84 329-415 836-930 (977)
167 TIGR03713 acc_sec_asp1 accesso 86.0 3.4 7.3E-05 42.2 8.3 74 330-416 409-488 (519)
168 cd02067 B12-binding B12 bindin 85.7 1.5 3.2E-05 34.9 4.6 42 8-49 1-42 (119)
169 PF05159 Capsule_synth: Capsul 85.4 3.6 7.8E-05 38.1 7.7 43 331-376 183-226 (269)
170 TIGR02919 accessory Sec system 85.1 16 0.00035 36.4 12.4 126 268-421 281-414 (438)
171 PRK13935 stationary phase surv 84.7 19 0.00041 32.8 11.6 37 7-45 1-37 (253)
172 PF02441 Flavoprotein: Flavopr 84.5 1.3 2.8E-05 35.9 3.7 44 7-51 1-44 (129)
173 PF04464 Glyphos_transf: CDP-G 84.3 1.4 3.1E-05 42.8 4.7 108 329-447 251-365 (369)
174 cd00550 ArsA_ATPase Oxyanion-t 84.0 4.5 9.8E-05 37.1 7.5 43 9-52 3-45 (254)
175 PRK05647 purN phosphoribosylgl 83.9 11 0.00024 33.1 9.6 35 6-43 1-37 (200)
176 PLN03063 alpha,alpha-trehalose 83.5 6 0.00013 42.8 9.3 103 337-455 363-477 (797)
177 PRK06849 hypothetical protein; 82.9 6.5 0.00014 38.6 8.7 37 4-44 2-38 (389)
178 PRK00346 surE 5'(3')-nucleotid 82.5 27 0.00058 31.9 11.6 37 7-45 1-37 (250)
179 PRK02797 4-alpha-L-fucosyltran 82.1 25 0.00053 33.0 11.2 80 330-414 206-292 (322)
180 PRK12342 hypothetical protein; 82.0 15 0.00032 33.7 9.8 40 100-141 100-145 (254)
181 TIGR02398 gluc_glyc_Psyn gluco 81.9 16 0.00035 36.9 11.0 108 332-455 364-482 (487)
182 PF04413 Glycos_transf_N: 3-De 81.9 6.4 0.00014 34.1 7.2 95 14-140 28-126 (186)
183 PRK05986 cob(I)alamin adenolsy 81.5 19 0.00041 31.3 9.8 105 6-122 22-126 (191)
184 PRK13934 stationary phase surv 80.8 27 0.00059 32.0 11.0 37 7-45 1-37 (266)
185 COG0003 ArsA Predicted ATPase 80.5 15 0.00032 34.9 9.6 40 6-45 1-41 (322)
186 PRK01077 cobyrinic acid a,c-di 79.8 16 0.00036 36.6 10.4 104 8-142 5-124 (451)
187 TIGR01007 eps_fam capsular exo 79.6 23 0.00049 31.0 10.3 39 6-44 16-56 (204)
188 COG0438 RfaG Glycosyltransfera 79.5 52 0.0011 30.5 16.2 79 330-416 257-342 (381)
189 PF02310 B12-binding: B12 bind 79.0 5.7 0.00012 31.4 5.6 45 7-51 1-45 (121)
190 PF12146 Hydrolase_4: Putative 78.9 3.7 8.1E-05 29.9 4.1 36 7-42 16-51 (79)
191 PF07429 Glyco_transf_56: 4-al 78.3 44 0.00095 31.9 11.7 81 330-415 245-332 (360)
192 PF00551 Formyl_trans_N: Formy 77.1 16 0.00034 31.5 8.2 33 7-42 1-35 (181)
193 PRK13931 stationary phase surv 77.0 53 0.0012 30.2 11.8 31 110-140 86-129 (261)
194 cd00561 CobA_CobO_BtuR ATP:cor 76.5 45 0.00097 28.0 11.4 98 8-122 4-106 (159)
195 cd03793 GT1_Glycogen_synthase_ 75.4 7.5 0.00016 39.8 6.4 73 339-415 467-551 (590)
196 PRK06732 phosphopantothenate-- 74.8 3.1 6.7E-05 37.5 3.3 36 7-42 1-48 (229)
197 PF01075 Glyco_transf_9: Glyco 74.1 5.8 0.00013 36.0 5.0 99 268-374 103-208 (247)
198 PRK14501 putative bifunctional 73.5 10 0.00022 40.8 7.3 110 334-455 346-462 (726)
199 PRK08305 spoVFB dipicolinate s 73.4 5.7 0.00012 34.6 4.4 41 6-46 5-45 (196)
200 TIGR00708 cobA cob(I)alamin ad 73.3 58 0.0013 27.8 10.9 98 7-122 6-108 (173)
201 PRK06718 precorrin-2 dehydroge 72.8 26 0.00056 30.8 8.5 145 267-435 8-165 (202)
202 PRK14098 glycogen synthase; Pr 72.7 6.4 0.00014 40.0 5.3 37 4-42 3-47 (489)
203 PRK05299 rpsB 30S ribosomal pr 72.7 10 0.00022 34.7 6.1 35 109-143 155-191 (258)
204 TIGR00347 bioD dethiobiotin sy 72.6 25 0.00055 29.5 8.3 28 13-40 5-32 (166)
205 TIGR03029 EpsG chain length de 72.4 44 0.00095 30.9 10.5 37 6-42 102-140 (274)
206 cd00984 DnaB_C DnaB helicase C 71.9 26 0.00055 31.6 8.7 43 9-51 16-59 (242)
207 PRK03359 putative electron tra 71.3 41 0.00089 30.8 9.6 41 99-141 102-148 (256)
208 TIGR03018 pepcterm_TyrKin exop 70.5 57 0.0012 28.6 10.4 40 6-45 34-76 (207)
209 PRK14099 glycogen synthase; Pr 70.4 7.4 0.00016 39.5 5.2 36 5-42 2-45 (485)
210 TIGR01011 rpsB_bact ribosomal 70.3 13 0.00029 33.2 6.2 36 109-144 153-190 (225)
211 COG2910 Putative NADH-flavin r 70.3 8.1 0.00018 33.1 4.4 34 7-44 1-34 (211)
212 PRK07313 phosphopantothenoylcy 70.2 5.8 0.00013 34.2 3.8 41 6-47 1-41 (182)
213 PRK06988 putative formyltransf 69.9 45 0.00097 31.6 10.0 34 6-44 2-35 (312)
214 PF04127 DFP: DNA / pantothena 69.2 4.1 8.9E-05 35.2 2.6 38 7-44 4-53 (185)
215 PRK00090 bioD dithiobiotin syn 69.1 35 0.00076 30.3 8.8 33 9-41 2-35 (222)
216 COG1484 DnaC DNA replication p 68.7 8.3 0.00018 35.3 4.7 47 6-52 105-151 (254)
217 PRK08057 cobalt-precorrin-6x r 68.6 40 0.00087 30.7 9.0 90 6-138 2-98 (248)
218 PRK11519 tyrosine kinase; Prov 68.3 79 0.0017 34.0 12.6 39 6-44 525-565 (719)
219 cd02071 MM_CoA_mut_B12_BD meth 68.1 11 0.00024 30.1 4.7 37 8-44 1-37 (122)
220 cd02070 corrinoid_protein_B12- 68.0 12 0.00027 32.8 5.5 46 6-51 82-127 (201)
221 COG2099 CobK Precorrin-6x redu 67.7 40 0.00087 30.5 8.5 91 6-138 2-99 (257)
222 TIGR00379 cobB cobyrinic acid 67.4 48 0.001 33.3 10.2 107 9-143 2-121 (449)
223 COG3660 Predicted nucleoside-d 67.4 1E+02 0.0022 28.3 18.5 74 288-373 186-270 (329)
224 PRK13789 phosphoribosylamine-- 67.3 22 0.00048 35.4 7.7 36 5-45 3-38 (426)
225 COG1797 CobB Cobyrinic acid a, 67.2 22 0.00049 34.8 7.3 108 9-145 3-124 (451)
226 COG2185 Sbm Methylmalonyl-CoA 67.0 9.3 0.0002 31.2 4.0 38 5-42 11-48 (143)
227 CHL00175 minD septum-site dete 66.9 1E+02 0.0022 28.5 11.8 39 6-44 14-54 (281)
228 PRK06029 3-octaprenyl-4-hydrox 66.8 8.1 0.00017 33.4 3.9 44 6-50 1-45 (185)
229 PRK10490 sensor protein KdpD; 66.2 9.4 0.0002 42.1 5.2 40 6-45 24-63 (895)
230 TIGR02015 BchY chlorophyllide 66.0 47 0.001 33.0 9.6 90 8-139 287-380 (422)
231 PF02571 CbiJ: Precorrin-6x re 65.9 24 0.00053 32.2 7.0 92 7-138 1-99 (249)
232 PRK05595 replicative DNA helic 65.9 27 0.00059 35.0 8.1 43 9-51 204-247 (444)
233 PF06925 MGDG_synth: Monogalac 65.8 17 0.00037 30.8 5.8 46 93-140 73-124 (169)
234 TIGR02370 pyl_corrinoid methyl 65.5 16 0.00035 32.0 5.7 46 6-51 84-129 (197)
235 PRK00784 cobyric acid synthase 64.5 68 0.0015 32.6 10.7 34 9-42 5-39 (488)
236 TIGR01470 cysG_Nterm siroheme 64.4 65 0.0014 28.4 9.3 147 268-435 8-165 (205)
237 PF01012 ETF: Electron transfe 64.2 43 0.00093 28.1 7.9 107 9-140 2-122 (164)
238 TIGR00460 fmt methionyl-tRNA f 64.1 58 0.0012 30.9 9.5 33 7-44 1-33 (313)
239 PRK05920 aromatic acid decarbo 63.8 10 0.00022 33.3 4.0 44 6-50 3-46 (204)
240 cd01423 MGS_CPS_I_III Methylgl 62.7 73 0.0016 24.9 8.6 94 11-137 4-106 (116)
241 PRK07236 hypothetical protein; 62.6 14 0.00031 36.1 5.4 37 1-42 1-37 (386)
242 PRK06249 2-dehydropantoate 2-r 62.5 9.5 0.00021 36.2 4.0 36 4-44 3-38 (313)
243 PF00731 AIRC: AIR carboxylase 62.1 69 0.0015 26.6 8.3 137 272-435 2-149 (150)
244 CHL00067 rps2 ribosomal protei 62.0 26 0.00056 31.5 6.4 36 109-144 159-196 (230)
245 PRK09739 hypothetical protein; 62.0 20 0.00044 31.3 5.7 39 4-42 1-42 (199)
246 PF00318 Ribosomal_S2: Ribosom 61.9 24 0.00053 31.2 6.2 114 21-143 43-177 (211)
247 PRK12825 fabG 3-ketoacyl-(acyl 61.7 16 0.00035 32.7 5.3 38 1-42 1-38 (249)
248 PRK09620 hypothetical protein; 61.5 11 0.00023 34.0 3.9 37 6-42 3-51 (229)
249 PRK13768 GTPase; Provisional 61.5 35 0.00077 31.2 7.4 39 6-44 2-40 (253)
250 TIGR02852 spore_dpaB dipicolin 61.2 10 0.00022 32.8 3.6 38 8-45 2-39 (187)
251 cd01980 Chlide_reductase_Y Chl 61.0 43 0.00093 33.3 8.4 32 103-139 344-375 (416)
252 CHL00072 chlL photochlorophyll 60.9 16 0.00034 34.3 5.1 39 7-45 1-39 (290)
253 cd01121 Sms Sms (bacterial rad 60.4 1.1E+02 0.0023 29.9 10.8 41 9-49 85-125 (372)
254 cd07039 TPP_PYR_POX Pyrimidine 60.2 77 0.0017 26.7 8.7 28 346-375 63-96 (164)
255 PF02142 MGS: MGS-like domain 60.1 18 0.00038 27.3 4.3 84 23-136 2-94 (95)
256 PRK07206 hypothetical protein; 59.9 47 0.001 32.8 8.6 33 7-44 3-35 (416)
257 TIGR01501 MthylAspMutase methy 59.5 22 0.00049 28.8 5.0 45 7-51 2-46 (134)
258 PRK11199 tyrA bifunctional cho 59.4 73 0.0016 31.1 9.6 33 6-43 98-131 (374)
259 PRK06321 replicative DNA helic 58.8 68 0.0015 32.4 9.4 43 9-51 229-272 (472)
260 PRK05632 phosphate acetyltrans 57.9 1.1E+02 0.0024 32.6 11.3 35 8-42 4-39 (684)
261 PF09314 DUF1972: Domain of un 57.7 1.3E+02 0.0027 26.1 10.2 39 7-45 2-45 (185)
262 COG2109 BtuR ATP:corrinoid ade 57.6 1.3E+02 0.0028 26.1 9.7 98 9-122 31-133 (198)
263 cd02032 Bchl_like This family 56.9 19 0.0004 33.2 4.8 38 7-44 1-38 (267)
264 smart00851 MGS MGS-like domain 56.8 78 0.0017 23.4 8.2 79 23-136 2-89 (90)
265 cd00532 MGS-like MGS-like doma 56.8 92 0.002 24.2 8.6 85 19-138 10-105 (112)
266 PRK10867 signal recognition pa 56.6 69 0.0015 31.9 8.8 42 6-47 100-142 (433)
267 TIGR03880 KaiC_arch_3 KaiC dom 56.4 27 0.00058 31.1 5.7 44 9-52 19-62 (224)
268 PF02374 ArsA_ATPase: Anion-tr 56.0 20 0.00043 33.9 4.8 40 7-46 1-41 (305)
269 PRK09841 cryptic autophosphory 55.8 1E+02 0.0022 33.2 10.7 39 6-44 530-570 (726)
270 TIGR01425 SRP54_euk signal rec 55.8 97 0.0021 30.8 9.6 40 7-46 101-140 (429)
271 COG0287 TyrA Prephenate dehydr 55.8 17 0.00036 33.8 4.2 42 6-52 3-44 (279)
272 PF10093 DUF2331: Uncharacteri 55.7 2.1E+02 0.0044 27.9 22.3 39 332-373 246-287 (374)
273 PRK13236 nitrogenase reductase 55.7 24 0.00053 33.1 5.4 44 1-44 1-44 (296)
274 cd02069 methionine_synthase_B1 55.6 29 0.00064 30.8 5.6 47 5-51 87-133 (213)
275 PRK08229 2-dehydropantoate 2-r 55.6 13 0.00028 35.7 3.7 34 6-44 2-35 (341)
276 PF01210 NAD_Gly3P_dh_N: NAD-d 55.1 6.8 0.00015 32.8 1.4 32 8-44 1-32 (157)
277 TIGR01281 DPOR_bchL light-inde 55.1 21 0.00046 32.9 4.9 38 7-44 1-38 (268)
278 TIGR01005 eps_transp_fam exopo 54.9 89 0.0019 33.9 10.2 40 6-45 545-586 (754)
279 PF02702 KdpD: Osmosensitive K 54.6 26 0.00056 30.6 4.8 40 6-45 5-44 (211)
280 TIGR00416 sms DNA repair prote 54.5 56 0.0012 32.9 8.0 41 9-49 97-137 (454)
281 COG0240 GpsA Glycerol-3-phosph 54.2 39 0.00084 32.1 6.3 35 6-45 1-35 (329)
282 TIGR03878 thermo_KaiC_2 KaiC d 54.2 1.8E+02 0.0038 26.7 11.6 36 9-44 39-74 (259)
283 COG2085 Predicted dinucleotide 53.9 23 0.00049 31.2 4.4 32 6-42 1-32 (211)
284 PRK13982 bifunctional SbtC-lik 53.8 14 0.00031 37.0 3.6 40 5-44 255-306 (475)
285 KOG0832 Mitochondrial/chloropl 53.7 8.8 0.00019 33.8 1.9 115 16-144 90-208 (251)
286 PF03446 NAD_binding_2: NAD bi 53.7 12 0.00027 31.5 2.8 32 6-42 1-32 (163)
287 TIGR00421 ubiX_pad polyprenyl 53.5 14 0.00031 31.8 3.2 42 8-50 1-42 (181)
288 cd01974 Nitrogenase_MoFe_beta 53.2 90 0.0019 31.2 9.2 35 100-139 368-402 (435)
289 PRK11823 DNA repair protein Ra 52.9 55 0.0012 32.9 7.6 41 9-49 83-123 (446)
290 PRK04328 hypothetical protein; 52.9 1.8E+02 0.0039 26.4 10.9 43 9-51 26-68 (249)
291 PRK05579 bifunctional phosphop 51.8 25 0.00054 34.6 4.9 46 3-49 3-48 (399)
292 PRK06522 2-dehydropantoate 2-r 51.3 18 0.00038 34.0 3.8 31 7-42 1-31 (304)
293 cd01965 Nitrogenase_MoFe_beta_ 51.2 36 0.00078 33.9 6.1 34 100-138 362-395 (428)
294 PRK12921 2-dehydropantoate 2-r 50.9 18 0.00039 34.0 3.8 38 7-49 1-38 (305)
295 PRK09165 replicative DNA helic 50.9 52 0.0011 33.5 7.2 43 9-51 220-277 (497)
296 TIGR02655 circ_KaiC circadian 50.7 1.8E+02 0.0039 29.6 11.0 43 9-51 266-308 (484)
297 PLN02470 acetolactate synthase 50.6 78 0.0017 33.1 8.7 92 276-375 2-109 (585)
298 PRK06756 flavodoxin; Provision 50.2 32 0.00068 28.4 4.7 37 6-42 1-38 (148)
299 KOG3339 Predicted glycosyltran 50.2 1.3E+02 0.0028 25.9 8.0 25 8-33 40-64 (211)
300 PF05693 Glycogen_syn: Glycoge 50.2 43 0.00093 34.6 6.3 92 338-431 461-565 (633)
301 PRK05234 mgsA methylglyoxal sy 50.1 1.4E+02 0.0031 24.5 10.5 101 6-142 4-116 (142)
302 PRK03767 NAD(P)H:quinone oxido 50.0 31 0.00068 30.2 4.9 37 6-42 1-39 (200)
303 PF09001 DUF1890: Domain of un 49.9 20 0.00044 28.9 3.2 35 16-51 9-43 (139)
304 PRK13011 formyltetrahydrofolat 49.2 1.7E+02 0.0037 27.3 9.8 86 5-122 88-176 (286)
305 COG0801 FolK 7,8-dihydro-6-hyd 48.9 36 0.00078 28.5 4.7 35 272-306 3-37 (160)
306 TIGR01283 nifE nitrogenase mol 48.5 1.6E+02 0.0035 29.6 10.3 35 99-138 385-419 (456)
307 cd03114 ArgK-like The function 48.5 1.5E+02 0.0033 24.4 11.1 36 9-44 2-37 (148)
308 PF06506 PrpR_N: Propionate ca 48.5 75 0.0016 27.1 6.9 111 18-144 17-155 (176)
309 COG1663 LpxK Tetraacyldisaccha 48.5 40 0.00087 32.0 5.4 32 12-43 55-86 (336)
310 TIGR00313 cobQ cobyric acid sy 48.3 2E+02 0.0044 29.1 10.9 27 16-42 9-35 (475)
311 KOG0081 GTPase Rab27, small G 48.3 36 0.00079 28.3 4.4 44 101-144 109-167 (219)
312 PRK11064 wecC UDP-N-acetyl-D-m 48.0 25 0.00054 34.9 4.3 33 5-42 2-34 (415)
313 PRK12446 undecaprenyldiphospho 47.8 57 0.0012 31.5 6.7 99 270-374 2-120 (352)
314 KOG2941 Beta-1,4-mannosyltrans 47.8 2.6E+02 0.0057 26.9 27.0 127 5-145 11-142 (444)
315 TIGR03877 thermo_KaiC_1 KaiC d 47.6 1.1E+02 0.0025 27.4 8.3 43 9-51 24-66 (237)
316 PRK13234 nifH nitrogenase redu 47.5 37 0.00081 31.8 5.3 37 8-44 6-42 (295)
317 PRK05784 phosphoribosylamine-- 47.4 99 0.0022 31.4 8.5 31 7-42 1-33 (486)
318 PRK12827 short chain dehydroge 47.3 42 0.0009 30.1 5.5 37 1-41 1-37 (249)
319 PRK00005 fmt methionyl-tRNA fo 47.2 1.9E+02 0.0041 27.3 10.0 32 7-43 1-32 (309)
320 COG2861 Uncharacterized protei 46.9 1.7E+02 0.0037 26.4 8.7 39 98-137 137-178 (250)
321 PLN02939 transferase, transfer 46.7 39 0.00084 37.1 5.7 39 5-43 480-524 (977)
322 PLN03064 alpha,alpha-trehalose 46.3 2.6E+02 0.0057 31.0 11.9 104 336-455 446-561 (934)
323 COG1748 LYS9 Saccharopine dehy 46.3 1.6E+02 0.0035 28.8 9.4 41 6-51 1-43 (389)
324 PRK07773 replicative DNA helic 46.2 73 0.0016 35.2 7.9 43 9-51 220-263 (886)
325 cd02034 CooC The accessory pro 46.2 49 0.0011 26.0 5.0 37 8-44 1-37 (116)
326 COG0541 Ffh Signal recognition 46.1 73 0.0016 31.5 6.9 41 6-46 100-140 (451)
327 COG2874 FlaH Predicted ATPases 46.0 23 0.0005 31.3 3.2 35 15-49 37-71 (235)
328 PRK14478 nitrogenase molybdenu 46.0 1.5E+02 0.0032 30.1 9.6 33 100-137 384-416 (475)
329 TIGR01380 glut_syn glutathione 45.9 24 0.00052 33.5 3.7 39 7-45 1-42 (312)
330 PF01695 IstB_IS21: IstB-like 45.7 35 0.00076 29.3 4.4 44 7-50 48-91 (178)
331 COG2205 KdpD Osmosensitive K+ 45.6 42 0.00092 35.8 5.5 42 6-47 22-63 (890)
332 cd02065 B12-binding_like B12 b 45.2 45 0.00097 26.2 4.8 41 9-49 2-42 (125)
333 cd01968 Nitrogenase_NifE_I Nit 45.2 1.7E+02 0.0037 29.0 9.7 34 100-138 347-380 (410)
334 PRK12744 short chain dehydroge 44.9 43 0.00093 30.4 5.2 39 1-42 1-40 (257)
335 cd01424 MGS_CPS_II Methylglyox 44.9 1.4E+02 0.0031 22.9 9.3 83 19-137 11-100 (110)
336 PRK01175 phosphoribosylformylg 44.1 2.3E+02 0.005 26.1 9.6 35 6-43 3-37 (261)
337 PRK13604 luxD acyl transferase 44.0 50 0.0011 31.1 5.4 36 6-41 36-71 (307)
338 PRK13896 cobyrinic acid a,c-di 43.4 2.8E+02 0.006 27.7 10.7 35 8-42 3-38 (433)
339 cd01985 ETF The electron trans 42.8 2.1E+02 0.0046 24.3 8.9 39 100-140 82-123 (181)
340 PRK13869 plasmid-partitioning 42.8 43 0.00093 33.1 5.0 39 6-44 120-160 (405)
341 TIGR02113 coaC_strep phosphopa 42.2 29 0.00062 29.8 3.3 37 8-45 2-38 (177)
342 PRK05636 replicative DNA helic 42.1 1.3E+02 0.0028 30.7 8.5 42 9-50 268-310 (505)
343 TIGR02237 recomb_radB DNA repa 42.1 1.9E+02 0.0041 25.2 8.7 43 9-51 15-58 (209)
344 PRK00094 gpsA NAD(P)H-dependen 42.0 28 0.0006 33.1 3.6 33 6-43 1-33 (325)
345 COG2084 MmsB 3-hydroxyisobutyr 41.9 35 0.00076 31.8 4.0 33 7-44 1-33 (286)
346 KOG1209 1-Acyl dihydroxyaceton 41.8 45 0.00098 29.4 4.3 38 1-40 1-38 (289)
347 COG4088 Predicted nucleotide k 41.8 37 0.00081 29.9 3.8 104 7-143 2-111 (261)
348 PF01372 Melittin: Melittin; 41.7 7.2 0.00016 20.9 -0.3 17 357-373 1-17 (26)
349 PF03808 Glyco_tran_WecB: Glyc 41.6 2.2E+02 0.0047 24.1 9.2 97 23-145 37-138 (172)
350 PF08323 Glyco_transf_5: Starc 41.6 23 0.0005 32.2 2.8 23 21-43 20-42 (245)
351 COG0151 PurD Phosphoribosylami 41.3 1.5E+02 0.0033 29.1 8.2 33 7-44 1-33 (428)
352 PRK10353 3-methyl-adenine DNA 41.2 1.2E+02 0.0027 26.2 6.9 73 372-446 21-116 (187)
353 PRK14618 NAD(P)H-dependent gly 40.7 36 0.00077 32.5 4.1 34 5-43 3-36 (328)
354 PRK08591 acetyl-CoA carboxylas 40.7 1.6E+02 0.0034 29.5 8.9 34 6-44 2-35 (451)
355 TIGR02699 archaeo_AfpA archaeo 40.5 44 0.00096 28.5 4.1 37 9-46 2-40 (174)
356 PRK06027 purU formyltetrahydro 40.5 2.3E+02 0.0051 26.4 9.3 85 5-121 88-175 (286)
357 PRK06395 phosphoribosylamine-- 40.3 1.2E+02 0.0025 30.4 7.7 32 6-42 2-33 (435)
358 cd03466 Nitrogenase_NifN_2 Nit 40.2 1.9E+02 0.0041 28.9 9.2 35 99-138 362-396 (429)
359 TIGR00959 ffh signal recogniti 40.1 2.3E+02 0.0049 28.3 9.6 41 7-47 100-141 (428)
360 TIGR02700 flavo_MJ0208 archaeo 40.0 43 0.00094 30.2 4.2 37 9-45 2-40 (234)
361 PF03721 UDPG_MGDP_dh_N: UDP-g 40.0 42 0.0009 29.0 4.0 32 7-43 1-32 (185)
362 PF02572 CobA_CobO_BtuR: ATP:c 39.9 55 0.0012 27.9 4.5 103 7-122 4-107 (172)
363 PRK10916 ADP-heptose:LPS hepto 39.7 1.5E+02 0.0032 28.5 8.2 88 22-140 201-288 (348)
364 PRK06835 DNA replication prote 39.4 44 0.00096 31.9 4.4 43 7-49 184-226 (329)
365 PLN02350 phosphogluconate dehy 39.4 27 0.00058 35.4 3.0 37 1-42 1-37 (493)
366 PF04244 DPRP: Deoxyribodipyri 39.4 34 0.00075 30.6 3.4 25 19-43 47-71 (224)
367 PF04493 Endonuclease_5: Endon 39.3 59 0.0013 28.7 4.8 41 99-139 77-124 (206)
368 PF15092 UPF0728: Uncharacteri 39.3 91 0.002 23.0 4.8 44 1-44 1-48 (88)
369 COG0143 MetG Methionyl-tRNA sy 39.2 53 0.0011 33.8 5.1 38 6-43 4-51 (558)
370 cd01141 TroA_d Periplasmic bin 39.2 47 0.001 28.4 4.3 37 100-139 61-99 (186)
371 PRK06703 flavodoxin; Provision 39.1 57 0.0012 26.9 4.6 37 6-42 1-38 (151)
372 PRK14619 NAD(P)H-dependent gly 39.0 36 0.00079 32.1 3.8 34 5-43 3-36 (308)
373 PRK06603 enoyl-(acyl carrier p 38.9 64 0.0014 29.4 5.4 41 1-42 1-42 (260)
374 PRK14569 D-alanyl-alanine synt 38.8 66 0.0014 30.2 5.5 38 5-42 2-43 (296)
375 TIGR02114 coaB_strep phosphopa 38.8 27 0.00059 31.3 2.8 20 23-42 28-47 (227)
376 PRK12826 3-ketoacyl-(acyl-carr 38.7 70 0.0015 28.6 5.6 39 1-43 1-39 (251)
377 cd06559 Endonuclease_V Endonuc 38.6 34 0.00073 30.2 3.2 40 99-138 81-127 (208)
378 COG1703 ArgK Putative periplas 38.6 80 0.0017 29.6 5.6 41 5-45 50-90 (323)
379 PF10083 DUF2321: Uncharacteri 38.6 1E+02 0.0022 25.6 5.5 74 374-455 78-151 (158)
380 PRK13302 putative L-aspartate 38.5 44 0.00096 30.9 4.2 37 1-42 1-39 (271)
381 PRK00207 sulfur transfer compl 38.4 79 0.0017 25.4 5.1 36 7-42 1-40 (128)
382 TIGR00640 acid_CoA_mut_C methy 38.2 77 0.0017 25.6 5.0 38 6-43 2-39 (132)
383 COG1066 Sms Predicted ATP-depe 38.2 52 0.0011 32.2 4.5 40 9-49 96-135 (456)
384 PRK08125 bifunctional UDP-gluc 38.0 2.9E+02 0.0063 29.4 10.7 39 102-142 68-107 (660)
385 cd01983 Fer4_NifH The Fer4_Nif 37.7 77 0.0017 23.0 4.9 33 9-41 2-34 (99)
386 PRK05993 short chain dehydroge 37.6 64 0.0014 29.7 5.2 34 6-42 3-36 (277)
387 PF02776 TPP_enzyme_N: Thiamin 37.4 1.5E+02 0.0032 25.1 7.0 66 346-415 64-145 (172)
388 PF06506 PrpR_N: Propionate ca 37.4 29 0.00063 29.7 2.6 31 345-378 33-63 (176)
389 PRK13230 nitrogenase reductase 37.0 63 0.0014 29.9 5.0 38 7-44 2-39 (279)
390 PF01075 Glyco_transf_9: Glyco 36.9 2.4E+02 0.0053 25.2 8.8 102 7-142 106-212 (247)
391 TIGR00639 PurN phosphoribosylg 36.8 2.8E+02 0.0061 24.0 10.3 34 7-43 1-36 (190)
392 PRK10416 signal recognition pa 36.8 2.6E+02 0.0056 26.6 9.1 38 8-45 116-153 (318)
393 PRK03094 hypothetical protein; 36.6 32 0.0007 25.0 2.3 20 23-42 10-29 (80)
394 PF00862 Sucrose_synth: Sucros 36.5 56 0.0012 32.9 4.6 41 102-142 392-434 (550)
395 TIGR01990 bPGM beta-phosphoglu 36.5 2.4E+02 0.0052 23.7 8.4 91 23-138 92-184 (185)
396 TIGR02853 spore_dpaA dipicolin 36.4 73 0.0016 29.8 5.3 101 24-136 14-117 (287)
397 COG4081 Uncharacterized protei 36.3 56 0.0012 26.1 3.6 29 16-44 14-42 (148)
398 cd01715 ETF_alpha The electron 36.3 2.6E+02 0.0056 23.5 9.6 41 99-141 73-116 (168)
399 PF02585 PIG-L: GlcNAc-PI de-N 36.1 1.6E+02 0.0035 23.2 6.7 21 22-42 13-33 (128)
400 cd02040 NifH NifH gene encodes 36.0 66 0.0014 29.5 5.0 37 8-44 3-39 (270)
401 PF10649 DUF2478: Protein of u 36.0 2.6E+02 0.0057 23.5 13.8 118 10-146 2-137 (159)
402 COG0569 TrkA K+ transport syst 35.9 44 0.00094 30.0 3.6 33 7-44 1-33 (225)
403 PRK06194 hypothetical protein; 35.7 77 0.0017 29.2 5.5 38 1-42 1-38 (287)
404 PF12695 Abhydrolase_5: Alpha/ 35.6 70 0.0015 25.5 4.6 34 9-42 1-34 (145)
405 PLN02240 UDP-glucose 4-epimera 35.6 61 0.0013 31.0 4.9 33 6-42 5-37 (352)
406 COG0771 MurD UDP-N-acetylmuram 35.6 61 0.0013 32.4 4.8 37 5-46 6-42 (448)
407 PF14359 DUF4406: Domain of un 35.4 59 0.0013 24.4 3.7 28 11-38 2-33 (92)
408 TIGR00521 coaBC_dfp phosphopan 35.2 48 0.001 32.5 4.0 43 6-49 3-45 (390)
409 TIGR03026 NDP-sugDHase nucleot 35.2 51 0.0011 32.7 4.3 31 7-42 1-31 (411)
410 COG0859 RfaF ADP-heptose:LPS h 35.1 2E+02 0.0044 27.4 8.3 100 7-142 176-280 (334)
411 cd01452 VWA_26S_proteasome_sub 35.0 1.6E+02 0.0034 25.5 6.7 38 7-44 108-146 (187)
412 PRK10818 cell division inhibit 35.0 65 0.0014 29.6 4.7 38 7-44 2-41 (270)
413 TIGR02195 heptsyl_trn_II lipop 34.7 2.6E+02 0.0056 26.5 9.0 98 8-140 176-278 (334)
414 PRK07414 cob(I)yrinic acid a,c 34.5 2.7E+02 0.0058 23.9 7.9 36 7-42 22-57 (178)
415 PRK08939 primosomal protein Dn 34.4 53 0.0012 31.0 4.1 44 8-51 158-201 (306)
416 PRK13235 nifH nitrogenase redu 34.4 69 0.0015 29.6 4.8 37 8-44 3-39 (274)
417 KOG0853 Glycosyltransferase [C 34.3 24 0.00052 35.4 1.8 59 360-427 381-442 (495)
418 KOG2825 Putative arsenite-tran 34.1 1.5E+02 0.0032 27.1 6.4 41 6-46 18-59 (323)
419 PRK05703 flhF flagellar biosyn 34.1 2.2E+02 0.0049 28.3 8.5 38 8-45 223-262 (424)
420 PRK08265 short chain dehydroge 33.7 81 0.0018 28.7 5.2 38 1-42 1-38 (261)
421 PRK00750 lysK lysyl-tRNA synth 33.6 1.3E+02 0.0029 30.7 7.0 29 21-49 46-74 (510)
422 COG4394 Uncharacterized protei 33.4 4.1E+02 0.0088 24.8 11.2 40 331-373 239-281 (370)
423 TIGR00725 conserved hypothetic 33.3 59 0.0013 27.3 3.8 37 6-42 1-39 (159)
424 PRK00421 murC UDP-N-acetylmura 33.2 63 0.0014 32.6 4.6 36 2-41 3-38 (461)
425 COG3349 Uncharacterized conser 33.1 43 0.00094 33.6 3.3 33 7-44 1-33 (485)
426 COG1763 MobB Molybdopterin-gua 33.0 83 0.0018 26.5 4.5 37 7-43 2-39 (161)
427 cd02072 Glm_B12_BD B12 binding 33.0 83 0.0018 25.3 4.3 44 8-51 1-44 (128)
428 COG0205 PfkA 6-phosphofructoki 33.0 1.2E+02 0.0027 29.1 6.2 117 6-138 2-124 (347)
429 PF05728 UPF0227: Uncharacteri 32.8 93 0.002 27.0 5.0 43 100-144 48-93 (187)
430 PRK11780 isoprenoid biosynthes 32.6 97 0.0021 27.6 5.2 38 7-44 2-43 (217)
431 PF00289 CPSase_L_chain: Carba 32.6 98 0.0021 24.1 4.6 68 286-365 12-89 (110)
432 TIGR01012 Sa_S2_E_A ribosomal 32.5 31 0.00067 30.1 2.0 33 111-143 108-142 (196)
433 PRK06180 short chain dehydroge 32.5 85 0.0018 28.9 5.1 34 7-43 4-37 (277)
434 PRK08293 3-hydroxybutyryl-CoA 32.5 49 0.0011 30.8 3.5 33 6-43 3-35 (287)
435 PF06180 CbiK: Cobalt chelatas 32.4 70 0.0015 29.4 4.4 40 270-309 1-43 (262)
436 COG0716 FldA Flavodoxins [Ener 32.4 96 0.0021 25.6 4.9 41 6-46 1-42 (151)
437 PRK05973 replicative DNA helic 32.3 97 0.0021 28.0 5.2 43 9-51 67-109 (237)
438 PRK05246 glutathione synthetas 32.2 53 0.0011 31.2 3.7 39 6-44 1-42 (316)
439 PRK00170 azoreductase; Reviewe 32.2 95 0.0021 26.9 5.2 37 6-42 1-43 (201)
440 PRK12829 short chain dehydroge 32.2 89 0.0019 28.3 5.2 35 5-43 10-44 (264)
441 COG2987 HutU Urocanate hydrata 32.1 42 0.00091 32.9 2.9 41 334-374 467-509 (561)
442 PRK02649 ppnK inorganic polyph 32.1 74 0.0016 30.0 4.6 55 343-416 65-124 (305)
443 TIGR01162 purE phosphoribosyla 32.0 3.1E+02 0.0066 23.0 7.7 26 282-307 36-61 (156)
444 COG1090 Predicted nucleoside-d 32.0 2.8E+02 0.0061 25.8 7.9 21 24-44 12-32 (297)
445 PRK06222 ferredoxin-NADP(+) re 31.9 1E+02 0.0023 28.6 5.6 38 8-47 100-137 (281)
446 PF13450 NAD_binding_8: NAD(P) 31.7 58 0.0013 22.7 2.9 20 23-42 8-27 (68)
447 cd00861 ProRS_anticodon_short 31.7 86 0.0019 23.1 4.2 36 7-42 2-39 (94)
448 PRK06079 enoyl-(acyl carrier p 31.6 89 0.0019 28.3 5.0 40 1-42 1-41 (252)
449 TIGR02329 propionate_PrpR prop 31.5 3.1E+02 0.0066 28.3 9.2 110 17-141 36-172 (526)
450 PRK04885 ppnK inorganic polyph 31.4 75 0.0016 29.3 4.4 28 346-375 35-68 (265)
451 PRK10037 cell division protein 31.4 86 0.0019 28.5 4.9 37 8-44 3-40 (250)
452 PRK07454 short chain dehydroge 31.3 1.2E+02 0.0025 27.1 5.7 39 1-43 1-39 (241)
453 PRK06111 acetyl-CoA carboxylas 31.3 3.1E+02 0.0068 27.4 9.3 34 6-44 2-35 (450)
454 cd07025 Peptidase_S66 LD-Carbo 31.3 95 0.0021 28.9 5.2 75 282-377 45-121 (282)
455 PRK07806 short chain dehydroge 31.2 84 0.0018 28.1 4.8 38 1-42 1-38 (248)
456 PF03720 UDPG_MGDP_dh_C: UDP-g 31.0 59 0.0013 25.0 3.2 22 21-42 17-38 (106)
457 PF07015 VirC1: VirC1 protein; 31.0 1.1E+02 0.0023 27.6 5.1 33 14-46 10-42 (231)
458 PRK15408 autoinducer 2-binding 30.9 4.4E+02 0.0095 25.2 9.8 38 100-140 72-113 (336)
459 COG2210 Peroxiredoxin family p 30.9 1E+02 0.0022 25.0 4.5 36 7-42 3-39 (137)
460 COG2120 Uncharacterized protei 30.8 88 0.0019 28.3 4.7 38 5-42 9-46 (237)
461 PF03698 UPF0180: Uncharacteri 30.7 45 0.00098 24.3 2.2 22 23-44 10-31 (80)
462 PRK04020 rps2P 30S ribosomal p 30.7 37 0.00079 29.9 2.1 33 111-143 114-148 (204)
463 PRK13232 nifH nitrogenase redu 30.5 85 0.0019 28.9 4.8 37 8-44 3-39 (273)
464 PLN02735 carbamoyl-phosphate s 30.5 4.2E+02 0.0091 30.3 10.8 39 6-44 23-67 (1102)
465 PLN00016 RNA-binding protein; 30.5 62 0.0013 31.6 4.0 36 6-43 52-89 (378)
466 COG2267 PldB Lysophospholipase 30.4 87 0.0019 29.4 4.8 38 7-44 34-71 (298)
467 PRK10422 lipopolysaccharide co 30.4 2E+02 0.0044 27.6 7.5 28 111-140 262-289 (352)
468 TIGR02482 PFKA_ATP 6-phosphofr 30.4 43 0.00093 31.5 2.7 37 343-379 86-126 (301)
469 cd03789 GT1_LPS_heptosyltransf 30.4 3.6E+02 0.0079 24.7 9.0 86 21-140 140-225 (279)
470 PRK12481 2-deoxy-D-gluconate 3 30.3 99 0.0021 27.9 5.1 39 1-42 1-40 (251)
471 PF01497 Peripla_BP_2: Peripla 30.3 75 0.0016 28.2 4.3 38 104-143 55-94 (238)
472 CHL00194 ycf39 Ycf39; Provisio 30.3 97 0.0021 29.3 5.2 32 7-42 1-32 (317)
473 COG2733 Predicted membrane pro 30.2 2.1E+02 0.0046 27.8 7.1 45 367-413 62-108 (415)
474 PF01380 SIS: SIS domain SIS d 30.2 93 0.002 24.5 4.4 36 10-45 56-91 (131)
475 PF06564 YhjQ: YhjQ protein; 30.2 1.1E+02 0.0023 27.9 5.0 35 8-42 3-38 (243)
476 TIGR00345 arsA arsenite-activa 30.2 1.5E+02 0.0032 27.7 6.3 22 24-45 3-24 (284)
477 PRK08181 transposase; Validate 30.0 72 0.0016 29.5 4.0 41 7-47 107-147 (269)
478 PRK06523 short chain dehydroge 30.0 1E+02 0.0022 27.9 5.1 32 8-42 10-41 (260)
479 PLN02929 NADH kinase 29.9 70 0.0015 30.1 3.9 66 345-416 63-137 (301)
480 PF00391 PEP-utilizers: PEP-ut 29.9 67 0.0014 23.3 3.1 28 111-138 30-59 (80)
481 KOG3062 RNA polymerase II elon 29.8 1.2E+02 0.0026 27.2 5.0 36 7-42 2-38 (281)
482 PF07355 GRDB: Glycine/sarcosi 29.8 86 0.0019 30.0 4.5 39 98-138 69-117 (349)
483 PRK13185 chlL protochlorophyll 29.8 97 0.0021 28.4 5.0 37 8-44 4-40 (270)
484 PF02571 CbiJ: Precorrin-6x re 29.7 2.5E+02 0.0053 25.7 7.4 103 23-138 118-225 (249)
485 cd00674 LysRS_core_class_I cat 29.6 2.4E+02 0.0051 27.3 7.6 28 21-48 42-69 (353)
486 KOG1250 Threonine/serine dehyd 29.5 4.2E+02 0.0091 26.0 8.9 62 351-416 247-316 (457)
487 COG0665 DadA Glycine/D-amino a 29.4 60 0.0013 31.5 3.7 35 5-44 3-37 (387)
488 COG1154 Dxs Deoxyxylulose-5-ph 29.3 5E+02 0.011 27.0 9.9 116 259-414 491-622 (627)
489 TIGR00467 lysS_arch lysyl-tRNA 29.2 1.8E+02 0.0039 29.8 7.0 32 20-51 40-71 (515)
490 PRK04539 ppnK inorganic polyph 29.1 88 0.0019 29.4 4.5 57 342-416 64-124 (296)
491 PRK12374 putative dithiobiotin 29.0 1E+02 0.0023 27.6 4.9 34 9-42 5-39 (231)
492 TIGR01761 thiaz-red thiazoliny 28.8 3E+02 0.0064 26.6 8.1 62 336-397 52-120 (343)
493 PF13419 HAD_2: Haloacid dehal 28.7 2.5E+02 0.0054 23.0 7.1 22 23-44 82-103 (176)
494 PLN00141 Tic62-NAD(P)-related 28.6 1.2E+02 0.0026 27.4 5.4 34 5-42 16-49 (251)
495 PRK08339 short chain dehydroge 28.6 1E+02 0.0022 28.2 4.9 39 1-42 1-40 (263)
496 PRK12767 carbamoyl phosphate s 28.5 75 0.0016 30.1 4.1 33 6-44 1-35 (326)
497 PF13460 NAD_binding_10: NADH( 28.5 69 0.0015 27.1 3.5 29 14-44 4-32 (183)
498 TIGR02193 heptsyl_trn_I lipopo 28.3 3.2E+02 0.007 25.6 8.4 28 111-140 254-281 (319)
499 PRK12377 putative replication 28.2 89 0.0019 28.5 4.3 42 8-49 103-144 (248)
500 TIGR01915 npdG NADPH-dependent 28.2 58 0.0013 28.9 3.1 31 7-42 1-32 (219)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-61 Score=476.00 Aligned_cols=428 Identities=28% Similarity=0.505 Sum_probs=329.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHP 80 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~ 80 (463)
|...++.||+++|+|++||++|++.||+.|+.+|++|||++++.+..++.+... ..++++|..+|++++.+.
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-------~~~~i~~v~lp~g~~~~~- 72 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-------PKLGITFMSISDGQDDDP- 72 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-------CCCCEEEEECCCCCCCCc-
Confidence 666667899999999999999999999999999999999999887666544211 112599999998765322
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcC-C-CCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhc
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDS-N-SPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIA 158 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (463)
..++..+...+...+.+.+.++++.+ . ..+++||+|.+.+|+..+|+++|||++.++++++..+..+.+.+.....
T Consensus 73 --~~~~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 73 --PRDFFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred --cccHHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 22344444455445778888888876 2 2348999999999999999999999999999998876665554432222
Q ss_pred CCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC---------
Q 037374 159 GELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP--------- 229 (463)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~--------- 229 (463)
...+.............+|++.. +...+++.++.........+..+.+......+++.+++||+.+||+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 229 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY 229 (448)
T ss_pred cccccccccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh
Confidence 11111100000011224566655 66677776554322222334555555666677889999999999962
Q ss_pred -c---e----eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcc-cCCHHHHHHHHHHHhhCCC
Q 037374 230 -I---F----IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVA-VMSRDQLIVFYYGLVNSKN 300 (463)
Q Consensus 230 -~---~----vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~-~~~~~~~~~~~~al~~~~~ 300 (463)
+ + |||+.......... ...+..+.++.+||+.++++++|||||||.. ..+.+++.+++.+|++.+.
T Consensus 230 ~~~~~~~v~~iGpl~~~~~~~~~~-----~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~ 304 (448)
T PLN02562 230 NNGQNPQILQIGPLHNQEATTITK-----PSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGR 304 (448)
T ss_pred ccccCCCEEEecCcccccccccCC-----CccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCC
Confidence 1 1 99997643211000 1122345678899998878899999999986 6788999999999999999
Q ss_pred cEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchh
Q 037374 301 GFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQ 380 (463)
Q Consensus 301 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 380 (463)
+|||++.... ...++++|.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||
T Consensus 305 ~fiW~~~~~~------~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 378 (448)
T PLN02562 305 PFIWVLNPVW------REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQ 378 (448)
T ss_pred CEEEEEcCCc------hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccch
Confidence 9999996421 1157888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 037374 381 QINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIK 454 (463)
Q Consensus 381 ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 454 (463)
+.||+++++.+|+|+.+ +.++.++|.++|+++|+| ++|++||++++++++++ .+|||+.+++++||++++
T Consensus 379 ~~na~~~~~~~g~g~~~-~~~~~~~l~~~v~~~l~~--~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 379 FVNCAYIVDVWKIGVRI-SGFGQKEVEEGLRKVMED--SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHHHHHhCceeEe-CCCCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 99999997667999888 568999999999999998 89999999999999987 667999999999999874
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1e-61 Score=476.65 Aligned_cols=444 Identities=28% Similarity=0.515 Sum_probs=337.1
Q ss_pred CCCCC-CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCC-C---ccCCCCCeEEEEcCCCC
Q 037374 1 MEKQD-PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGF-S---RYMQIPGLQLKTVTDGL 75 (463)
Q Consensus 1 m~~~~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~f~~i~~~~ 75 (463)
|+++. ..||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.+... . + .......++|..+|+++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~--~~~~~~~~~~~~~i~~~~~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANK--IQDGVLKPVGDGFIRFEFFEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhcccc--ccccccccCCCCeEEEeeCCCCC
Confidence 67764 6899999999999999999999999999999999999876665543111 0 0 00112237787788877
Q ss_pred CCCCCCCCCCHHHHHHHHHhhChHHHHHHHHcC--CCCc-eEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhh
Q 037374 76 PKDHPRTPDKFTELIDSLNLAIPPLLKEMVTDS--NSPV-NYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCI 152 (463)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~p-DlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (463)
+++.. ...++..++..+.....+.++++++.+ ..+| ++||+|.+.+|+..+|+++|||.+.+++++++.+..+.++
T Consensus 79 p~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 79 AEDDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred CCCcc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 65432 122344455555545677788888764 1244 9999999999999999999999999999999987776655
Q ss_pred hhhhhcCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCc--
Q 037374 153 PNIIIAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPI-- 230 (463)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~-- 230 (463)
+. ...+.... ........+|++.. +...+++.++............+.+.......++.+++||+.+||...
T Consensus 158 ~~----~~~~~~~~-~~~~~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 231 (480)
T PLN02555 158 YH----GLVPFPTE-TEPEIDVQLPCMPL-LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIID 231 (480)
T ss_pred hh----cCCCcccc-cCCCceeecCCCCC-cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 32 11122111 00011124677765 777788776543222333344455555566778899999999999542
Q ss_pred ---------eeccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCc
Q 037374 231 ---------FIGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG 301 (463)
Q Consensus 231 ---------~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~ 301 (463)
.|||+........... . ...+..++++.+||+.+++++||||||||....+.+++.+++.+++..+++
T Consensus 232 ~l~~~~~v~~iGPl~~~~~~~~~~~--~-~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 232 YMSKLCPIKPVGPLFKMAKTPNSDV--K-GDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred HHhhCCCEEEeCcccCccccccccc--c-ccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 2999965321110000 0 122345678999999887889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhh
Q 037374 302 FLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQ 381 (463)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 381 (463)
|||++.............+|+++.++.++|+++++|+||.+||.|+++++||||||+||+.||+++|||||++|++.||+
T Consensus 309 flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~ 388 (480)
T PLN02555 309 FLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQV 388 (480)
T ss_pred EEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccH
Confidence 99998632110000112478888888889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcceecc------CccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 037374 382 INSRFVDEVWKLGLDIK------DLFDRNIVEKAVNDLMV-KRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIK 454 (463)
Q Consensus 382 ~na~rv~~~~G~g~~l~------~~~~~~~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 454 (463)
.||+++++++|+|+++. +.++.++|.++|+++|+ +++.++|+||++|+++.++++.|||++.+++++||++++
T Consensus 389 ~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~ 468 (480)
T PLN02555 389 TDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLV 468 (480)
T ss_pred HHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999988789999992 46899999999999996 456899999999999999999999999999999999999
Q ss_pred hc
Q 037374 455 MM 456 (463)
Q Consensus 455 ~~ 456 (463)
++
T Consensus 469 ~~ 470 (480)
T PLN02555 469 RK 470 (480)
T ss_pred hc
Confidence 86
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.3e-61 Score=474.34 Aligned_cols=430 Identities=34% Similarity=0.575 Sum_probs=326.0
Q ss_pred CCCCC-CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCC
Q 037374 1 MEKQD-PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDH 79 (463)
Q Consensus 1 m~~~~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~ 79 (463)
|+..+ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+... . . ...++++|..+|++++++.
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~-----~---~~~~~i~~~~ip~glp~~~ 70 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--P-----S---DDFTDFQFVTIPESLPESD 70 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--c-----c---cCCCCeEEEeCCCCCCccc
Confidence 66553 6799999999999999999999999999999999999765421 1 0 1112599999998887642
Q ss_pred CCCCCCHHHHHHHHHhhChHHHHHHHHcC----CCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 037374 80 PRTPDKFTELIDSLNLAIPPLLKEMVTDS----NSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNI 155 (463)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (463)
.+.. ....++..+...+.+.+.++++.+ ..++++||+|.+.+|+..+|+++|||.+.+++++++.+..+..++..
T Consensus 71 ~~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 149 (451)
T PLN02410 71 FKNL-GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKL 149 (451)
T ss_pred cccc-CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHH
Confidence 2211 233455555545666677777654 23579999999999999999999999999999999887665554333
Q ss_pred hhcCC-CCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCce---
Q 037374 156 IIAGE-LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF--- 231 (463)
Q Consensus 156 ~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~--- 231 (463)
..... .|.... . ......+|++.. +...+++..... ........+... .....++.+++||+.+||....
T Consensus 150 ~~~~~~~~~~~~-~-~~~~~~iPg~~~-~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l 223 (451)
T PLN02410 150 YANNVLAPLKEP-K-GQQNELVPEFHP-LRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRL 223 (451)
T ss_pred HhccCCCCcccc-c-cCccccCCCCCC-CChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHH
Confidence 22111 121110 0 001123566554 555555543221 111122222222 2346788999999999985422
Q ss_pred ----------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCc
Q 037374 232 ----------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG 301 (463)
Q Consensus 232 ----------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~ 301 (463)
|||+....... ..++..++++.+||+++++++||||||||....+.+++.++..+|+..+.+
T Consensus 224 ~~~~~~~v~~vGpl~~~~~~~--------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~ 295 (451)
T PLN02410 224 QQQLQIPVYPIGPLHLVASAP--------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQ 295 (451)
T ss_pred HhccCCCEEEecccccccCCC--------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCC
Confidence 99997543211 122334557889999888899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhh
Q 037374 302 FLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQ 381 (463)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 381 (463)
|||++..+...+......+|++|.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+
T Consensus 296 FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 375 (451)
T PLN02410 296 FLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQK 375 (451)
T ss_pred eEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCH
Confidence 99999743111001112478999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 382 INSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK-RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 382 ~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
.||+++++.+|+|+.+.+.++.++|+++|+++|.+ ++++|+++++++++++++++.+||++.+++++||+.++.
T Consensus 376 ~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 376 VNARYLECVWKIGIQVEGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999987779999998789999999999999974 356899999999999999999999999999999999864
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.9e-60 Score=463.93 Aligned_cols=421 Identities=28% Similarity=0.531 Sum_probs=321.3
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHP 80 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~ 80 (463)
|+.+ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|..+|++++++..
T Consensus 1 ~~~~-~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~---------~~~~i~~~~ipdglp~~~~ 70 (449)
T PLN02173 1 MEKM-RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD---------PSSPISIATISDGYDQGGF 70 (449)
T ss_pred CCCC-CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC---------CCCCEEEEEcCCCCCCccc
Confidence 5555 46999999999999999999999999999999999998765554221 1124999999998876322
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcC--CCCc-eEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhh
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDS--NSPV-NYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIII 157 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~p-DlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (463)
....+...++..+...+.+.++++++.+ ..+| ++||+|.+.+|+..+|+.+|||.+.+++++++....+... .. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~ 148 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-N 148 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-c
Confidence 2233454566666656778888888865 2345 9999999999999999999999999999988775443321 11 0
Q ss_pred cCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCc-------
Q 037374 158 AGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPI------- 230 (463)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~------- 230 (463)
.. + ....+|++.. +...+++.++............+.+.......++.+++||+.+||...
T Consensus 149 ~~--------~---~~~~~pg~p~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 149 NG--------S---LTLPIKDLPL-LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred cC--------C---ccCCCCCCCC-CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 00 0 0011344444 556677665543222222334444445566788899999999999432
Q ss_pred ----eecccccccc---ccCCCCCCCCCCCc--ccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCc
Q 037374 231 ----FIGPLNAHLK---VRIPEKTHSSSGLW--KVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG 301 (463)
Q Consensus 231 ----~vGpl~~~~~---~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~ 301 (463)
+|||+.+... ......... .++| ..++.+.+||+.++++++|||||||....+.+++.+++.+| .+.+
T Consensus 217 ~~v~~VGPl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 217 CPVLTIGPTVPSMYLDQQIKSDNDYD-LNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred CCeeEEcccCchhhcccccccccccc-ccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 2999974210 000000000 1222 23456999999888889999999999999999999999999 6778
Q ss_pred EEEEEcCCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchh
Q 037374 302 FLWVIRPDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQ 380 (463)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 380 (463)
|+|++..+. ...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||
T Consensus 294 flWvvr~~~------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 294 YLWVVRASE------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred EEEEEeccc------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 999996421 114778887776 5789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceecc-C----ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 037374 381 QINSRFVDEVWKLGLDIK-D----LFDRNIVEKAVNDLMV-KRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIK 454 (463)
Q Consensus 381 ~~na~rv~~~~G~g~~l~-~----~~~~~~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 454 (463)
+.||+++++.+|+|+.+. . .++.++|+++|+++|+ ++++++|+||++++++.++++.+||++.+++++||++++
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999999988789999885 2 2699999999999996 446889999999999999999999999999999999985
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=8.1e-60 Score=463.69 Aligned_cols=424 Identities=29% Similarity=0.452 Sum_probs=318.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHH--HHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAEL--LSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT 82 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~ 82 (463)
+..||+++|+|++||++|++.||+. |++||++|||++++.+.+.+.. .+ ...+.+++..+|++++++.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~-~~------~~~~~~~~~~~~~glp~~~--- 76 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLST-VE------KPRRPVDLVFFSDGLPKDD--- 76 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcc-cc------CCCCceEEEECCCCCCCCc---
Confidence 3579999999999999999999999 5699999999999887666532 22 1123478887887776643
Q ss_pred CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCC
Q 037374 83 PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELP 162 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (463)
..+...++..+.....+.+.++++.. +||+||+|.+..|+..+|+.+|||.+.+++.++..+..+.+.+.. ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~----~~~ 150 (456)
T PLN02210 77 PRAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK----TNS 150 (456)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc----cCC
Confidence 12344555556555667788888876 899999999999999999999999999999999877665543321 111
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHH-HHHhhhhccceEEecCcccccCCc-----------
Q 037374 163 IKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFA-RETRLSVRAGGLILNTFEDLEGPI----------- 230 (463)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~----------- 230 (463)
.... ........+|++.. +...+++..+.... ...+.... +.......++.+++||+.+||...
T Consensus 151 ~~~~-~~~~~~~~~Pgl~~-~~~~dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~v~ 226 (456)
T PLN02210 151 FPDL-EDLNQTVELPALPL-LEVRDLPSFMLPSG--GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADLKPVI 226 (456)
T ss_pred CCcc-cccCCeeeCCCCCC-CChhhCChhhhcCC--chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhcCCEE
Confidence 1111 00001123566654 56666665443211 11122222 333344567899999999988532
Q ss_pred eeccccccc--cccCCCCCCCC-CCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEc
Q 037374 231 FIGPLNAHL--KVRIPEKTHSS-SGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIR 307 (463)
Q Consensus 231 ~vGpl~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 307 (463)
+|||+.... .........++ ..+|..++++.+|++.++++++|||||||....+.+++.+++.+|+..+.+|||+++
T Consensus 227 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~ 306 (456)
T PLN02210 227 PIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIR 306 (456)
T ss_pred EEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 299997421 00000000000 123456778999999888899999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHH
Q 037374 308 PDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRF 386 (463)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 386 (463)
.+.. ...+..+.++. +++..+++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||++
T Consensus 307 ~~~~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~ 380 (456)
T PLN02210 307 PKEK------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARL 380 (456)
T ss_pred CCcc------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHH
Confidence 4211 02334455544 4778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceecc-C----ccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 037374 387 VDEVWKLGLDIK-D----LFDRNIVEKAVNDLMVK-RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIK 454 (463)
Q Consensus 387 v~~~~G~g~~l~-~----~~~~~~l~~~i~~vl~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 454 (463)
+++++|+|+.+. . .++.++|+++|+++|.+ ++.++|+||++|++..++++++|||+.+++++||+++.
T Consensus 381 ~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 381 LVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 976689999985 2 58999999999999974 35679999999999999999999999999999999875
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-59 Score=459.08 Aligned_cols=428 Identities=24% Similarity=0.433 Sum_probs=319.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEecCcchh-hhhhccCCCCCcc-CCCCCeEEEEcCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAG--IKITFLNTEYYYD-RVIRHSSDGFSRY-MQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~f~~i~~~~~~~~~~ 81 (463)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. .+... . +.. ...++++|..+|+.......+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~-~---~~~~~~~~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTY-V---KSIASSQPFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHh-h---hhccCCCCCeEEEEeCCCCCCCccc
Confidence 56999999999999999999999999998 9999999987652 22111 1 100 112359999999643211101
Q ss_pred CCCCHHHHHHHHHhhC----hHHHHHHHHcC--CCCc-eEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhh
Q 037374 82 TPDKFTELIDSLNLAI----PPLLKEMVTDS--NSPV-NYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPN 154 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~p-DlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 154 (463)
...+....+..+.... .+.+.++++.. +.+| ++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 1223333333333334 33455555543 1134 899999999999999999999999999999987776665543
Q ss_pred hhhcC-CCCCCCCCcccccccccCCC-CCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC---
Q 037374 155 IIIAG-ELPIKGTEDMDRLITNVTGM-EGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP--- 229 (463)
Q Consensus 155 ~~~~~-~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~--- 229 (463)
..... ..+.... .....+|++ .. +...+++.++..... ...+.+....+.+++.+++||+.+||.+
T Consensus 159 ~~~~~~~~~~~~~----~~~~~vPgl~~~-l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 159 RHSKDTSVFVRNS----EEMLSIPGFVNP-VPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred ccccccccCcCCC----CCeEECCCCCCC-CChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 21110 0111110 122346776 45 777777765532221 2333344445678899999999999976
Q ss_pred ----c---e----eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhC
Q 037374 230 ----I---F----IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS 298 (463)
Q Consensus 230 ----~---~----vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~ 298 (463)
+ + |||+....... .+. ... ..++++.+||++++++++|||||||....+.+++.+++.+|+..
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~-~~~----~~~-~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~ 303 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQP-HPE----QDL-ARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELC 303 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCC-CCc----ccc-chhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHC
Confidence 2 1 99997643211 010 011 12357999999888889999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccc
Q 037374 299 KNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFA 378 (463)
Q Consensus 299 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 378 (463)
+++|||++..+.. .....+|++|.++.++|+.+++|+||.+||+|+++++||||||+||+.||+++|||||++|++.
T Consensus 304 ~~~flW~~r~~~~---~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~ 380 (468)
T PLN02207 304 QYRFLWSLRTEEV---TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYA 380 (468)
T ss_pred CCcEEEEEeCCCc---cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccc
Confidence 9999999974311 1122578899988899999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhcceecc--------CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 037374 379 DQQINSRFVDEVWKLGLDIK--------DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLV 450 (463)
Q Consensus 379 DQ~~na~rv~~~~G~g~~l~--------~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i 450 (463)
||+.||+++++++|+|+.+. +..+.++|+++|+++|++++++||+||+++++++++++.+||++.+++++||
T Consensus 381 DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v 460 (468)
T PLN02207 381 EQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFI 460 (468)
T ss_pred cchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999877799999662 2359999999999999733499999999999999999999999999999999
Q ss_pred HHHHh
Q 037374 451 KDIKM 455 (463)
Q Consensus 451 ~~~~~ 455 (463)
++++.
T Consensus 461 ~~~~~ 465 (468)
T PLN02207 461 HDVIG 465 (468)
T ss_pred HHHHh
Confidence 99875
No 7
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.5e-59 Score=465.07 Aligned_cols=427 Identities=30% Similarity=0.514 Sum_probs=322.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT 82 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~ 82 (463)
...||+++|+|++||++|++.||++|+.| ||+|||++++.+...+.+... .++++|..+|++++++.. .
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~--------~~gi~fv~lp~~~p~~~~-~ 79 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK--------PDNIRFATIPNVIPSELV-R 79 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC--------CCCEEEEECCCCCCCccc-c
Confidence 47899999999999999999999999999 999999999888777665310 124999999976554321 1
Q ss_pred CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCC
Q 037374 83 PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELP 162 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (463)
..+...++..+...+.+.+.++++.+..++|+||+|.+++|+..+|+++|||++.++++++..+..+.+.+........|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 80 AADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 23444455555545677788888765336799999999999999999999999999999997766655544322111112
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCce-----------
Q 037374 163 IKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF----------- 231 (463)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~----------- 231 (463)
............++|++.. +...+++.++... .......+........+++.+++||+.+||+...
T Consensus 160 ~~~~~~~~~~~~~iPg~~~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~ 236 (459)
T PLN02448 160 VELSESGEERVDYIPGLSS-TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPV 236 (459)
T ss_pred CccccccCCccccCCCCCC-CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCce
Confidence 1110000111224566554 5566666554322 2222344445555556778999999998886521
Q ss_pred --eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCC
Q 037374 232 --IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPD 309 (463)
Q Consensus 232 --vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 309 (463)
|||+........... + ......+.++.+|++.++++++|||||||....+.+++++++.+|+..+.+|||++..+
T Consensus 237 ~~iGP~~~~~~~~~~~~-~--~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~ 313 (459)
T PLN02448 237 YPIGPSIPYMELKDNSS-S--SNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE 313 (459)
T ss_pred EEecCcccccccCCCcc-c--cccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 999865321100000 0 00111234788999988888999999999998889999999999999999999988521
Q ss_pred CCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHH
Q 037374 310 LISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDE 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~ 389 (463)
..++.+..++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||+++++
T Consensus 314 -----------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 382 (459)
T PLN02448 314 -----------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVE 382 (459)
T ss_pred -----------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHH
Confidence 123444445689999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhcceecc------CccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhcc
Q 037374 390 VWKLGLDIK------DLFDRNIVEKAVNDLMVK---RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKMMS 457 (463)
Q Consensus 390 ~~G~g~~l~------~~~~~~~l~~~i~~vl~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~ 457 (463)
.+|+|+.+. ..+++++|+++|+++|++ ++.+||+||+++++++++++.+||++.+++++||+++++|.
T Consensus 383 ~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~~ 459 (459)
T PLN02448 383 DWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQGR 459 (459)
T ss_pred HhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccC
Confidence 688998884 247999999999999974 46799999999999999999999999999999999999763
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.2e-59 Score=457.21 Aligned_cols=424 Identities=27% Similarity=0.473 Sum_probs=318.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEecCcch-hhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSH-AGIKITFLNTEYYY-DRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
..||+++|+|++||++|++.||+.|+. +|+.|||++++.+. ..+... . ...++++|..++++++++.....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-~------~~~~~i~~~~i~dglp~g~~~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-H------NNVENLSFLTFSDGFDDGVISNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-C------CCCCCEEEEEcCCCCCCcccccc
Confidence 459999999999999999999999996 79999999997542 222111 0 11235999999988776532223
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcC--C-CCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCC
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDS--N-SPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGE 160 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~--~-~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
......+..+...+.+.+.+++..+ . .++++||+|.+.+|+..+|+++|||.+.+++++++.++.+++.....
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 3444455555556778888888765 1 34599999999999999999999999999999999877655443110
Q ss_pred CCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhh--ccceEEecCcccccCCce-------
Q 037374 161 LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSV--RAGGLILNTFEDLEGPIF------- 231 (463)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~------- 231 (463)
. ....+|++.. +...+++.++............+.+..+... .++.+++||+.+||....
T Consensus 152 -----~-----~~~~iPglp~-l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 220 (455)
T PLN02152 152 -----N-----SVFEFPNLPS-LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIE 220 (455)
T ss_pred -----C-----CeeecCCCCC-CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCC
Confidence 0 1123556555 6667777665432222222233333333222 246899999999985332
Q ss_pred ---ecccccccc-ccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEc
Q 037374 232 ---IGPLNAHLK-VRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIR 307 (463)
Q Consensus 232 ---vGpl~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 307 (463)
|||+.+... .....+ .+ ...+..++++.+||+.+++++||||||||...++.+++.+++.+|+..+.+|||++.
T Consensus 221 v~~VGPL~~~~~~~~~~~~-~~-~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r 298 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESG-KD-LSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVIT 298 (455)
T ss_pred EEEEcccCccccccccccC-cc-ccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 999975321 000000 00 011233457999999888889999999999999999999999999999999999997
Q ss_pred CCCCCC---CCC---CCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhh
Q 037374 308 PDLISG---KDG---ESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQ 381 (463)
Q Consensus 308 ~~~~~~---~~~---~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~ 381 (463)
.+.... .+. ...++++|.++.++|+.+++|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 299 DKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred cCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 521100 000 01246788888889999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcceecc---C-ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 382 INSRFVDEVWKLGLDIK---D-LFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 382 ~na~rv~~~~G~g~~l~---~-~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
.||+++++.+|+|+.+. + ..+.++|+++|+++|+|++.+||+||+++++++++++.+||++++++++||+++
T Consensus 379 ~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999987667777764 2 469999999999999875567999999999999999999999999999999986
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.7e-59 Score=458.03 Aligned_cols=441 Identities=24% Similarity=0.380 Sum_probs=318.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCC----CCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTD----GLPKDHP 80 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~----~~~~~~~ 80 (463)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++..... ..+.+++..+|- +++++..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-------~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-------KHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-------cCCCeeEEeCCCCCcCCCCCCCc
Confidence 47899999999999999999999999999999999999888776654211 112467665541 3333321
Q ss_pred CC---CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhh
Q 037374 81 RT---PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIII 157 (463)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 157 (463)
.. .......+........+.+.+++.....+|++||+|.+.+|+..+|+.+|||++.+++++++.+..+.++....+
T Consensus 81 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~ 160 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMP 160 (477)
T ss_pred ChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccc
Confidence 11 111111222222234555666666543367999999999999999999999999999999998877666542111
Q ss_pred cCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCc-------
Q 037374 158 AGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPI------- 230 (463)
Q Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~------- 230 (463)
....+. .. ........+|++.. +...+++.++............+.+.......++.+++||+.+||...
T Consensus 161 ~~~~~~-~~-~~~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 161 TKINPD-DQ-NEILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred cccccc-cc-ccccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 000000 00 00001224676665 677777765543222222333333444434567789999999988431
Q ss_pred -------eeccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEE
Q 037374 231 -------FIGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFL 303 (463)
Q Consensus 231 -------~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i 303 (463)
+|||+.+..........++ .+.+..++++.+||+.+++++||||||||....+.+++.+++.+|+..+.+||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~-~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~fl 316 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERG-GPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFI 316 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccC-CcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEE
Confidence 1999975321100000000 01112356799999988888999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCchhHHHHhc-CCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhh
Q 037374 304 WVIRPDLISGKDGESQIPEEVVEATK-ERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQI 382 (463)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~ 382 (463)
|+++.+... ......+|++|.++.. .++++.+|+||.+||+|.++++||||||+||++||+++|||||++|++.||+.
T Consensus 317 w~~~~~~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 317 WCVKEPVNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEECCCccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 999743211 0011247788876654 46777799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceecc----CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhccC
Q 037374 383 NSRFVDEVWKLGLDIK----DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKMMSL 458 (463)
Q Consensus 383 na~rv~~~~G~g~~l~----~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~~~ 458 (463)
||+++++++|+|+++. ...+.+++.++|.++|. ++++||+||+++++.+++++.+||++.+++++||++++..++
T Consensus 396 na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~-~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~ 474 (477)
T PLN02863 396 NASLLVDELKVAVRVCEGADTVPDSDELARVFMESVS-ENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGL 474 (477)
T ss_pred hHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhcc
Confidence 9999877799999994 23589999999999994 239999999999999999999999999999999999998775
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-58 Score=451.70 Aligned_cols=437 Identities=27% Similarity=0.426 Sum_probs=315.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcC----CCCC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVT----DGLP 76 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~----~~~~ 76 (463)
|....+.||+++|++++||++|++.||+.|+.||..|||++++.+..++.+... ...+.+++..+| ++++
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~------~~~~~i~~~~lp~p~~dglp 74 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS------QLSSSITLVSFPLPSVPGLP 74 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc------cCCCCeeEEECCCCccCCCC
Confidence 555667899999999999999999999999999999999999887766653211 011248888888 5666
Q ss_pred CCCCCCCCCH----HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhh
Q 037374 77 KDHPRTPDKF----TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCI 152 (463)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 152 (463)
++... ..+. ...+......+.+.++++++.+ ++++||+|.+.+|+..+|+++|||++.+++++++.++.+.+.
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~ 151 (472)
T PLN02670 75 SSAES-STDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPP 151 (472)
T ss_pred CCccc-ccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhh
Confidence 54321 1122 1234344445777888888887 899999999999999999999999999999999877665433
Q ss_pred hhhhhcCCCCCCCCCcccccccccCCCCC-CcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCce
Q 037374 153 PNIIIAGELPIKGTEDMDRLITNVTGMEG-FLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF 231 (463)
Q Consensus 153 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 231 (463)
......+..+...+ .......++|.... .+...+++.++............+.+......+++.+++||+.+||....
T Consensus 152 ~~~~~~~~~~~~~~-~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 152 SSLMEGGDLRSTAE-DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred HhhhhcccCCCccc-cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 22222221111111 11001112222111 03334555444322211122233334444456788999999999884322
Q ss_pred -------------eccccccccccCCCCCCCCCCCc-ccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhh
Q 037374 232 -------------IGPLNAHLKVRIPEKTHSSSGLW-KVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVN 297 (463)
Q Consensus 232 -------------vGpl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~ 297 (463)
|||+....... ... .... +.++++.+||+.+++++||||||||...++.+++.+++.+|+.
T Consensus 231 ~~l~~~~~~~v~~VGPl~~~~~~~-~~~----~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 231 DLLSDLYRKPIIPIGFLPPVIEDD-EED----DTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHHHhhCCCeEEEecCCcccccc-ccc----cccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 99996431110 000 0000 1225799999988889999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceE-EeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccc
Q 037374 298 SKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYI-AGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS 376 (463)
Q Consensus 298 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~-~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 376 (463)
.+++|||++.............+|++|.++..+...+ .+|+||.+||+|+++++|||||||||+.||+++|||||++|+
T Consensus 306 s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~ 385 (472)
T PLN02670 306 SETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPV 385 (472)
T ss_pred CCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcc
Confidence 9999999997521110011125888998887665555 599999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhhcceecc-C----ccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 037374 377 FADQQINSRFVDEVWKLGLDIK-D----LFDRNIVEKAVNDLMVK-RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLV 450 (463)
Q Consensus 377 ~~DQ~~na~rv~~~~G~g~~l~-~----~~~~~~l~~~i~~vl~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i 450 (463)
+.||+.||++++ ++|+|+.++ . .++.++|+++|+++|.+ +|.+||+||+++++.+++. +...+++++|+
T Consensus 386 ~~DQ~~Na~~v~-~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~----~~~~~~~~~~~ 460 (472)
T PLN02670 386 LNEQGLNTRLLH-GKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM----DRNNRYVDELV 460 (472)
T ss_pred hhccHHHHHHHH-HcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc----chhHHHHHHHH
Confidence 999999999995 589999996 2 38999999999999975 3458999999999999984 55589999999
Q ss_pred HHHHhcc
Q 037374 451 KDIKMMS 457 (463)
Q Consensus 451 ~~~~~~~ 457 (463)
+.+...-
T Consensus 461 ~~l~~~~ 467 (472)
T PLN02670 461 HYLRENR 467 (472)
T ss_pred HHHHHhc
Confidence 9998754
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.1e-58 Score=449.27 Aligned_cols=420 Identities=29% Similarity=0.476 Sum_probs=315.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCC----CCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLS-HAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTD----GLPKDHP 80 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~----~~~~~~~ 80 (463)
+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+..++.+... ..+++++..+|. ++++..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-------~~~~i~~~~lp~p~~~glp~~~- 76 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-------NSTGVDIVGLPSPDISGLVDPS- 76 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-------cCCCceEEECCCccccCCCCCC-
Confidence 46999999999999999999999998 78999999999877655433211 112488888884 332111
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCC
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGE 160 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
......+..+.....+.++++++.+..+|++||+|.+.+|+..+|+++|||++.+++++++.++.+.+.+.......
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 77 ---AHVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred ---ccHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 12222233333345677788887643478999999999999999999999999999999987765554432111000
Q ss_pred CCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC-----------
Q 037374 161 LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP----------- 229 (463)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~----------- 229 (463)
.+. ........+|++.. +...+++..+... ....+..+.+.......++.+++||+.+||..
T Consensus 154 ~~~----~~~~~~~~iPg~~~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 154 EEH----TVQRKPLAMPGCEP-VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred ccc----ccCCCCcccCCCCc-cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 000 00001224666665 5566666433221 22234445555556677889999999998841
Q ss_pred --------ceeccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCc
Q 037374 230 --------IFIGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG 301 (463)
Q Consensus 230 --------~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~ 301 (463)
++|||+...... . ..++++.+||+.+++++||||||||...++.+++.++..+|+..+++
T Consensus 227 ~~~~~~~v~~VGPl~~~~~~---------~---~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~ 294 (481)
T PLN02992 227 GRVARVPVYPIGPLCRPIQS---------S---KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQR 294 (481)
T ss_pred ccccCCceEEecCccCCcCC---------C---cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 118998642110 0 23557999999888899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCC--------C----CC--CCCCchhHHHHhcC-CceEEeccChHhhhcccCcceeeeccChhhHHHHHH
Q 037374 302 FLWVIRPDLISG--------K----DG--ESQIPEEVVEATKE-RGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIM 366 (463)
Q Consensus 302 ~i~~~~~~~~~~--------~----~~--~~~~~~~~~~~~~~-nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~ 366 (463)
|||++..+...+ . .+ ...+|++|.++..+ ++++.+|+||.+||+|+++++||||||+||+.||++
T Consensus 295 flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~ 374 (481)
T PLN02992 295 FVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVV 374 (481)
T ss_pred EEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHH
Confidence 999996421000 0 00 12478888887765 556669999999999999999999999999999999
Q ss_pred hCCccccccccchhhhHHHHHHHhhhcceecc-C--ccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhh--cCC
Q 037374 367 AGMPMICWPSFADQQINSRFVDEVWKLGLDIK-D--LFDRNIVEKAVNDLMV-KRKEEFMESADQMANLAKKSVN--EGG 440 (463)
Q Consensus 367 ~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~--~~~~~~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~--~gg 440 (463)
+|||||++|++.||+.||+++++++|+|+.++ . .++.++|+++|+++|+ +++++++++++++++++++++. +||
T Consensus 375 ~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GG 454 (481)
T PLN02992 375 GGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGG 454 (481)
T ss_pred cCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999975699999997 2 4899999999999997 3467999999999999999994 699
Q ss_pred chHHHHHHHHHHHHh
Q 037374 441 SLYCNLDRLVKDIKM 455 (463)
Q Consensus 441 ~~~~~~~~~i~~~~~ 455 (463)
++.+++++||+++..
T Consensus 455 SS~~~l~~~v~~~~~ 469 (481)
T PLN02992 455 VAHESLCRVTKECQR 469 (481)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999999865
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.9e-58 Score=455.76 Aligned_cols=431 Identities=26% Similarity=0.434 Sum_probs=314.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEecCcchhhhhh-ccCCCCCccC--CCCCeEEEEcCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAG--IKITFLNTEYYYDRVIR-HSSDGFSRYM--QIPGLQLKTVTDGLPKDHP 80 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~f~~i~~~~~~~~~ 80 (463)
++||+++|++++||++|++.||+.|+.+| ..|||++++.+..++.. ... ..... ..++++|..+|+..+...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~lp~~~~~~~- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAY--IASLSASSEDRLRYEVISAGDQPTT- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhh--hhhcccCCCCCeEEEEcCCCCCCcc-
Confidence 68999999999999999999999999998 88999999876543211 000 00001 123599999997653221
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcC---CCCc-eEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDS---NSPV-NYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII 156 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~p-DlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (463)
. ...+...+..+.....+.+++++... ..+| ++||+|.+.+|+..+|+.+|||++.+++++++.+..+.+.+...
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 79 E-DPTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred c-chHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 1 11222233333333344445544332 1133 89999999999999999999999999999999887777665421
Q ss_pred hcCCCCCCCCCcccccccccCCCC-CCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccC-------
Q 037374 157 IAGELPIKGTEDMDRLITNVTGME-GFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEG------- 228 (463)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~------- 228 (463)
.....+.... .-......+|++. . +...+++..+.. ......+.+....+..++.+++|++.+||.
T Consensus 158 ~~~~~~~~~~-~~~~~~v~iPgl~~p-l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 158 DEKKYDVSEL-EDSEVELDVPSLTRP-YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cccccCcccc-CCCCceeECCCCCCC-CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 1100111100 0000112366653 3 555666654422 122344445555667788999999999885
Q ss_pred ------Cce--eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCC
Q 037374 229 ------PIF--IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKN 300 (463)
Q Consensus 229 ------~~~--vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~ 300 (463)
+.. |||+........ ......++++.+|++++++++||||||||....+.+++.+++.+|+..++
T Consensus 232 ~~~~~~~~v~~vGpl~~~~~~~~-------~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~ 304 (481)
T PLN02554 232 GSSGDLPPVYPVGPVLHLENSGD-------DSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGH 304 (481)
T ss_pred hcccCCCCEEEeCCCcccccccc-------ccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCC
Confidence 111 999943211110 00012345799999988788999999999998999999999999999999
Q ss_pred cEEEEEcCCCCC----CC----CCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccc
Q 037374 301 GFLWVIRPDLIS----GK----DGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMI 372 (463)
Q Consensus 301 ~~i~~~~~~~~~----~~----~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v 372 (463)
+|||+++.+... .. .....+|++|.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 305 ~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 305 RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred CeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 999999752110 00 0011358899888889999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHhhhcceecc------------CccCHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhhcC
Q 037374 373 CWPSFADQQINSRFVDEVWKLGLDIK------------DLFDRNIVEKAVNDLMV-KRKEEFMESADQMANLAKKSVNEG 439 (463)
Q Consensus 373 ~~P~~~DQ~~na~rv~~~~G~g~~l~------------~~~~~~~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~~g 439 (463)
++|++.||+.||+++.+++|+|+.++ +.++.++|+++|+++|+ | ++||+||+++++++++++++|
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~g 462 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDG 462 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999966546799999984 35899999999999997 6 899999999999999999999
Q ss_pred CchHHHHHHHHHHHHh
Q 037374 440 GSLYCNLDRLVKDIKM 455 (463)
Q Consensus 440 g~~~~~~~~~i~~~~~ 455 (463)
|++.+++++||++++.
T Consensus 463 Gss~~~l~~lv~~~~~ 478 (481)
T PLN02554 463 GSSHTALKKFIQDVTK 478 (481)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 9999999999999875
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.5e-57 Score=450.42 Aligned_cols=436 Identities=29% Similarity=0.470 Sum_probs=325.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCC----CeEEEEecCcchh----hhhhccCCCCCccCCCCCeEEEEcCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAG----IKITFLNTEYYYD----RVIRHSSDGFSRYMQIPGLQLKTVTDGLP 76 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~V~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~f~~i~~~~~ 76 (463)
.+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. .+..... .. ....+.++|..+|+...
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~lp~~~~ 78 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVR--RE-AASGLDIRFHHLPAVEP 78 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHh--hc-ccCCCCEEEEECCCCCC
Confidence 366999999999999999999999999997 7899999865422 2222100 00 00111499999997542
Q ss_pred CCCCCCCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 037374 77 KDHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII 156 (463)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (463)
+.. ......++..+...+.+.+++++..+..++++||+|.+.+|+..+|+++|||++.+++++++.+..+.+.+...
T Consensus 79 p~~---~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 79 PTD---AAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred CCc---cccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 211 12334455545556777888888875224699999999999999999999999999999999887766654321
Q ss_pred hcCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC-------
Q 037374 157 IAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP------- 229 (463)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~------- 229 (463)
.....+... .. ....+|++.. +...+++..+.... ......+........+++.+++||+.+||+.
T Consensus 156 ~~~~~~~~~---~~-~~~~iPGlp~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 228 (480)
T PLN00164 156 EEVAVEFEE---ME-GAVDVPGLPP-VPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIAD 228 (480)
T ss_pred ccccCcccc---cC-cceecCCCCC-CChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHh
Confidence 110001111 00 1123677665 66777776543322 1222333334455677889999999998841
Q ss_pred ----------ce--eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhh
Q 037374 230 ----------IF--IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVN 297 (463)
Q Consensus 230 ----------~~--vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~ 297 (463)
.. |||+....... .....++++.+||+.+++++||||||||....+.+++.+++.+|+.
T Consensus 229 ~~~~~~~~~~~v~~vGPl~~~~~~~---------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 229 GRCTPGRPAPTVYPIGPVISLAFTP---------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred ccccccCCCCceEEeCCCccccccC---------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 11 89987432111 1113567899999988889999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCC------CCCCCCCchhHHHHhcCCceEE-eccChHhhhcccCcceeeeccChhhHHHHHHhCCc
Q 037374 298 SKNGFLWVIRPDLISG------KDGESQIPEEVVEATKERGYIA-GWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMP 370 (463)
Q Consensus 298 ~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~nv~~~-~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP 370 (463)
.+.+|||++..+...+ .+....+|+++.++..+...++ +|+||.+||+|+++++|||||||||+.||+++|||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP 379 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 379 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCC
Confidence 9999999997532110 0011137788877766555554 99999999999999999999999999999999999
Q ss_pred cccccccchhhhHHHHHHHhhhcceecc-C-----ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHhhhcCCc
Q 037374 371 MICWPSFADQQINSRFVDEVWKLGLDIK-D-----LFDRNIVEKAVNDLMVK---RKEEFMESADQMANLAKKSVNEGGS 441 (463)
Q Consensus 371 ~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~-----~~~~~~l~~~i~~vl~~---~~~~~~~~a~~l~~~~~~~~~~gg~ 441 (463)
||++|+++||+.||+++++++|+|+.+. . ..+.++|.++|+++|.+ ++..+|++|+++++++++++.+||+
T Consensus 380 ~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGS 459 (480)
T PLN00164 380 MAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGS 459 (480)
T ss_pred EEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999998877799999985 2 36899999999999974 3688999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCCC
Q 037374 442 LYCNLDRLVKDIKMMSLRPQN 462 (463)
Q Consensus 442 ~~~~~~~~i~~~~~~~~~~~~ 462 (463)
+.+++++||++++....-|.|
T Consensus 460 S~~~l~~~v~~~~~~~~~~~~ 480 (480)
T PLN00164 460 SYAALQRLAREIRHGAVAPTR 480 (480)
T ss_pred HHHHHHHHHHHHHhccCCCCC
Confidence 999999999999988776643
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2e-57 Score=446.93 Aligned_cols=438 Identities=29% Similarity=0.450 Sum_probs=312.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcC-----CCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVT-----DGLPKDH 79 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~-----~~~~~~~ 79 (463)
+..||+++|++++||++|++.||+.|+.+|+.|||++++.+..++..... ....... .++|..+| ++++++.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~--~~~~~~~-~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTID--RARESGL-PIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhh--hccccCC-CeEEEEcCCCCccCCCCCCc
Confidence 34799999999999999999999999999999999999887665544311 0000111 38888888 5666542
Q ss_pred CCCC--C--CHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 037374 80 PRTP--D--KFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNI 155 (463)
Q Consensus 80 ~~~~--~--~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (463)
.... . .+...+........+.+.+++.....+|++||+|.+.+|+..+|+.+|||.+.+++++++.......+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 1111 1 12222222223456777777775323689999999999999999999999999999999876553332111
Q ss_pred hhcCCCCCCCCCcccccccccCCCCC--CcCCCCCCCccccCCcccHHHHHHHHHHhh-hhccceEEecCcccccCCc--
Q 037374 156 IIAGELPIKGTEDMDRLITNVTGMEG--FLRCRDLPSFCRVNNPMDLQLLLFARETRL-SVRAGGLILNTFEDLEGPI-- 230 (463)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~-- 230 (463)
.+ ..+.... . ....+|++.. .+...+++..+.... ....+...... ...++.+++||+.+||+..
T Consensus 164 ~~--~~~~~~~-~---~~~~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 164 NA--HLSVSSD-S---EPFVVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred cc--cccCCCC-C---ceeecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHH
Confidence 11 1111111 0 1122344331 134444544322111 12222222221 2346689999999999421
Q ss_pred -----------eeccccccccccCCCCCCCCCCCcc-cchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhC
Q 037374 231 -----------FIGPLNAHLKVRIPEKTHSSSGLWK-VDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS 298 (463)
Q Consensus 231 -----------~vGpl~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~ 298 (463)
+|||+........... .. ..... .++++.+||+.+++++||||||||.....++++.++..+|+..
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~-~~-~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~ 311 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKF-ER-GNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEAS 311 (491)
T ss_pred HHHhhcCCcEEEECccccccccccccc-cc-CCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Confidence 1999974221100000 00 00011 2356999999888899999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCcccccccc
Q 037374 299 KNGFLWVIRPDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF 377 (463)
Q Consensus 299 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~ 377 (463)
+.+|||++..+..........+|++|.++. +.++++.+|+||.+||+|+++++||||||+||+.||+++|||||++|++
T Consensus 312 ~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~ 391 (491)
T PLN02534 312 KKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLF 391 (491)
T ss_pred CCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccc
Confidence 999999997421110001113578888664 5677778999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhhhcceecc-C-------------ccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHhhhcCC
Q 037374 378 ADQQINSRFVDEVWKLGLDIK-D-------------LFDRNIVEKAVNDLMV---KRKEEFMESADQMANLAKKSVNEGG 440 (463)
Q Consensus 378 ~DQ~~na~rv~~~~G~g~~l~-~-------------~~~~~~l~~~i~~vl~---~~~~~~~~~a~~l~~~~~~~~~~gg 440 (463)
.||+.||+++++.||+|+++. . ..+.++|.++|+++|. +++.++|+||+++++++++++.+||
T Consensus 392 ~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GG 471 (491)
T PLN02534 392 AEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGG 471 (491)
T ss_pred ccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999998999999873 0 2789999999999995 5678999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcc
Q 037374 441 SLYCNLDRLVKDIKMMS 457 (463)
Q Consensus 441 ~~~~~~~~~i~~~~~~~ 457 (463)
++.+++++||++++..+
T Consensus 472 SS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 472 SSHINLSILIQDVLKQQ 488 (491)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999998643
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4e-57 Score=449.89 Aligned_cols=433 Identities=28% Similarity=0.468 Sum_probs=301.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCc---cCCC-CCeEEEEcC---CCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSR---YMQI-PGLQLKTVT---DGLPKD 78 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~f~~i~---~~~~~~ 78 (463)
+.||+++|+|++||++|++.||+.|+.||++|||++++.+...+.+. + ... .... ..+.+..+| ++++++
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~-~--a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKP-I--EAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhh-h--hhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 57999999999999999999999999999999999998887666542 2 111 0111 135555565 345443
Q ss_pred CCCC-------CCCHHHHHHHHH---hhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHH
Q 037374 79 HPRT-------PDKFTELIDSLN---LAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWS 148 (463)
Q Consensus 79 ~~~~-------~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 148 (463)
.... ......++..+. ....+.+.++++.. +||+||+|.+++|+..+|+.+|||++.+++++++....
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~ 159 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCA 159 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHH
Confidence 2111 011112222222 23445556666654 89999999999999999999999999999999876554
Q ss_pred HhhhhhhhhcCCCCCCCCCcccccccccCCCCC--CcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccc
Q 037374 149 FHCIPNIIIAGELPIKGTEDMDRLITNVTGMEG--FLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDL 226 (463)
Q Consensus 149 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 226 (463)
........+....+ .. . ....+|++.. .+...+++.. ..................+++.+++|++.+|
T Consensus 160 ~~~~~~~~~~~~~~--~~-~---~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 160 SYCIRVHKPQKKVA--SS-S---EPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred HHHHHhcccccccC--CC-C---ceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 33322111101111 00 0 0011333321 0222222211 1111122333333345677889999999888
Q ss_pred cCCce-------------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHH
Q 037374 227 EGPIF-------------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYY 293 (463)
Q Consensus 227 e~~~~-------------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~ 293 (463)
|.... |||+............++ ...+..++++.+|++.++++++|||||||....+.+.+.+++.
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~-~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERG-KKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHhccCCCEEEEccccccccccccccccC-CccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 75411 999754321100000000 1111234679999998888999999999999888999999999
Q ss_pred HHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccc
Q 037374 294 GLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMI 372 (463)
Q Consensus 294 al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v 372 (463)
+|+..+++|||+++.+.... .....+|++|.++. +.|+++.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 309 ~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 99999999999997531100 00114788887764 56888889999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHhhhcceec--------c-CccCHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHhhhcCCch
Q 037374 373 CWPSFADQQINSRFVDEVWKLGLDI--------K-DLFDRNIVEKAVNDLMVK-RKEEFMESADQMANLAKKSVNEGGSL 442 (463)
Q Consensus 373 ~~P~~~DQ~~na~rv~~~~G~g~~l--------~-~~~~~~~l~~~i~~vl~~-~~~~~~~~a~~l~~~~~~~~~~gg~~ 442 (463)
++|++.||+.||+++++.+++|+.+ + ..++.++|+++|+++|.+ ++.+||+||+++++.+++++.+||++
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS 467 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSS 467 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999987655666554 3 458999999999999985 34599999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 037374 443 YCNLDRLVKDIKM 455 (463)
Q Consensus 443 ~~~~~~~i~~~~~ 455 (463)
++++++||+++++
T Consensus 468 ~~~l~~~v~~~~~ 480 (482)
T PLN03007 468 FNDLNKFMEELNS 480 (482)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
No 16
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-56 Score=436.68 Aligned_cols=428 Identities=23% Similarity=0.401 Sum_probs=316.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHA-GIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
+..||+++|+|++||++|++.||+.|+.+ |..|||++++.....+.+... .......++++|..+|....++-....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~--~~~~~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEA--IHAAAARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccc--cccccCCCceEEEECCCCccccCCCCC
Confidence 35699999999999999999999999977 999999998765544321111 110101124899999853221100000
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCc-eEEEecchhHHHHHHhhhhhhhhcCCCC
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGIS-IIYFCTVSACAFWSFHCIPNIIIAGELP 162 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (463)
.+....+..+.....+.++++++.+..+|++||+|.+.+|+..+|+++||| .+.++++.++....+.+.+.... ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~~ 157 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VVE 157 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--ccc
Confidence 133333334444577888999887634689999999999999999999999 58887888776655555543211 000
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccC--------------
Q 037374 163 IKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEG-------------- 228 (463)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~-------------- 228 (463)
.... .... ...+|++.. +...+++..+.... ...+..+.........++.+++||+.+||+
T Consensus 158 ~~~~-~~~~-~~~vPg~p~-l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 158 GEYV-DIKE-PLKIPGCKP-VGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred cccC-CCCC-eeeCCCCCC-CChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 0000 1111 124677766 77777775443221 122333334445577899999999999884
Q ss_pred -----CceeccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEE
Q 037374 229 -----PIFIGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFL 303 (463)
Q Consensus 229 -----~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i 303 (463)
.++|||+..... .. ..++++.+||+.+++++||||||||...++.+++.++..+|+..+++||
T Consensus 233 ~~~~~v~~VGPl~~~~~----------~~--~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNV----------HV--EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred ccCCceEEecCCCCCcc----------cc--cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 112899863211 00 1234799999988889999999999999999999999999999999999
Q ss_pred EEEcCCCCC------CCC-CCCCCchhHHHHhcCCce-EEeccChHhhhcccCcceeeeccChhhHHHHHHhCCcccccc
Q 037374 304 WVIRPDLIS------GKD-GESQIPEEVVEATKERGY-IAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWP 375 (463)
Q Consensus 304 ~~~~~~~~~------~~~-~~~~~~~~~~~~~~~nv~-~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P 375 (463)
|++..+... +.. ....+|++|.++..+... +.+|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 999632110 000 112478888887766554 459999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhhhcceecc-----CccCHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHhhhcCCchHHHHH
Q 037374 376 SFADQQINSRFVDEVWKLGLDIK-----DLFDRNIVEKAVNDLMV---KRKEEFMESADQMANLAKKSVNEGGSLYCNLD 447 (463)
Q Consensus 376 ~~~DQ~~na~rv~~~~G~g~~l~-----~~~~~~~l~~~i~~vl~---~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 447 (463)
++.||+.||+++++++|+|+++. +.++.++|+++|+++|. +++.++|+||++++++.++++++||++.++++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999999987899999994 35899999999999994 56799999999999999999999999999999
Q ss_pred HHHHHH
Q 037374 448 RLVKDI 453 (463)
Q Consensus 448 ~~i~~~ 453 (463)
+||+++
T Consensus 461 ~~~~~~ 466 (470)
T PLN03015 461 EWAKRC 466 (470)
T ss_pred HHHHhc
Confidence 999876
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-57 Score=441.22 Aligned_cols=419 Identities=27% Similarity=0.469 Sum_probs=306.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEe--cCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCC-
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAG--IKITFLN--TEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHP- 80 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~- 80 (463)
.-||+++|++++||++|++.||+.|+.+| +.||+.. ++.+...+... . .......++++|..+|+..+....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~-~--~~~~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATY-I--SSVSSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhh-h--ccccCCCCCeEEEEcCCCCCCCCcc
Confidence 45999999999999999999999999998 5566644 43322222110 0 000011235999999976532211
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcC-C-CCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhc
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDS-N-SPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIA 158 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~-~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 158 (463)
.........+..+...+.+.+.+++..+ . .++++||+|.+.+|+..+|+.+|||++.+++++++.++.+.+.+.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 1122233333333444667778888775 2 2459999999999999999999999999999999988777665432100
Q ss_pred CCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC---------
Q 037374 159 GELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP--------- 229 (463)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~--------- 229 (463)
.+.... . ......+|++.. +...+++.++... .+.....+.........++.+++||+.+||..
T Consensus 160 --~~~~~~-~-~~~~v~iPg~p~-l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 160 --TPGKNL-K-DIPTVHIPGVPP-MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred --cccccc-c-cCCeecCCCCCC-CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 011000 0 001224667665 6777777655432 22233444455555677889999999999862
Q ss_pred --ce---eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEE
Q 037374 230 --IF---IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLW 304 (463)
Q Consensus 230 --~~---vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~ 304 (463)
.+ |||+....... . ... ..++++.+||+.+++++||||||||...++.+++.++..+|+..+++|||
T Consensus 233 ~~~~v~~vGPl~~~~~~~--~-----~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE--D-----RND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCEEEEeeeccCcccc--c-----ccc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 11 99997422100 0 011 12456999999888899999999999999999999999999999999999
Q ss_pred EEcCCCCCCCC--C-CCCCchhHHHHhcC-CceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchh
Q 037374 305 VIRPDLISGKD--G-ESQIPEEVVEATKE-RGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQ 380 (463)
Q Consensus 305 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~-nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 380 (463)
++..+...... . +..+|++|.++..+ |+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||
T Consensus 305 ~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 305 VVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred EEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 99743110000 0 11378889887754 67778999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceecc-C---ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHH
Q 037374 381 QINSRFVDEVWKLGLDIK-D---LFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYC 444 (463)
Q Consensus 381 ~~na~rv~~~~G~g~~l~-~---~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 444 (463)
+.||+++++++|+|+.++ + .++.++|+++|+++|++ ++|+++++++++..+.++++||++.+
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~--~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGE--CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999976789999996 3 47999999999999998 99999999999999999999999764
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.8e-56 Score=435.74 Aligned_cols=405 Identities=21% Similarity=0.346 Sum_probs=295.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEc--C--CCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTV--T--DGLPKDHP 80 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i--~--~~~~~~~~ 80 (463)
++.||+++|++++||++|++.||+.|+.+||+|||++++.+...+.+. + . ....+++..+ + ++++++..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~-~--a----~~~~i~~~~l~~p~~dgLp~g~~ 75 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH-N--L----FPDSIVFHPLTIPPVNGLPAGAE 75 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc-c--C----CCCceEEEEeCCCCccCCCCCcc
Confidence 357999999999999999999999999999999999998766665442 2 1 1113555544 3 44554421
Q ss_pred CCCCCH----HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 037374 81 RTPDKF----TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII 156 (463)
Q Consensus 81 ~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (463)
....+ ..++........+.++++++.+ ++|+||+| +..|+..+|..+|||++.+++++++... +.+.+..
T Consensus 76 -~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~- 149 (442)
T PLN02208 76 -TTSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGG- 149 (442)
T ss_pred -cccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcc-
Confidence 11112 1222233334666788888877 89999999 5789999999999999999999997643 3332210
Q ss_pred hcCCCCCCCCCcccccccccCCCCC---CcCCCCCCCccccCCcccHHHHHHHH-HHhhhhccceEEecCcccccCCce-
Q 037374 157 IAGELPIKGTEDMDRLITNVTGMEG---FLRCRDLPSFCRVNNPMDLQLLLFAR-ETRLSVRAGGLILNTFEDLEGPIF- 231 (463)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~~~- 231 (463)
..+. . +|++.. .+...+++.+. ........+.. .......++.+++||+.+||....
T Consensus 150 ---~~~~--------~---~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~ 211 (442)
T PLN02208 150 ---KLGV--------P---PPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCD 211 (442)
T ss_pred ---ccCC--------C---CCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHH
Confidence 0000 0 122221 02333343320 11112222222 223456788999999999985222
Q ss_pred ------------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCC
Q 037374 232 ------------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSK 299 (463)
Q Consensus 232 ------------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~ 299 (463)
|||+....... ...++++.+||+.+++++||||||||...++.+++.+++.+++..+
T Consensus 212 ~~~~~~~~~v~~vGpl~~~~~~~-----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~ 280 (442)
T PLN02208 212 YISRQYHKKVLLTGPMFPEPDTS-----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTG 280 (442)
T ss_pred HHHhhcCCCEEEEeecccCcCCC-----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCC
Confidence 99997542200 0245689999998888899999999999989999999988888788
Q ss_pred CcEEEEEcCCCCCCCCCCCCCchhHHHHhc-CCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccc
Q 037374 300 NGFLWVIRPDLISGKDGESQIPEEVVEATK-ERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFA 378 (463)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 378 (463)
.+++|++..+.... .....+|++|.++.. .|+.+.+|+||.+||+|+++++|||||||||+.||+++|||||++|++.
T Consensus 281 ~pf~wv~r~~~~~~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~ 359 (442)
T PLN02208 281 LPFLIAVKPPRGSS-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLS 359 (442)
T ss_pred CcEEEEEeCCCccc-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcch
Confidence 88888886431100 011257888887764 4677779999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhcceecc-Cc---cCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 037374 379 DQQINSRFVDEVWKLGLDIK-DL---FDRNIVEKAVNDLMVK---RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVK 451 (463)
Q Consensus 379 DQ~~na~rv~~~~G~g~~l~-~~---~~~~~l~~~i~~vl~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~ 451 (463)
||+.||+++++.+|+|+.++ .+ ++.++|+++|+++|++ +++++|++++++++.+.+ +|++.+++++||+
T Consensus 360 DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~ 435 (442)
T PLN02208 360 DQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVE 435 (442)
T ss_pred hhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 99999999877799999997 33 8999999999999964 357799999999999854 7889999999999
Q ss_pred HHHhc
Q 037374 452 DIKMM 456 (463)
Q Consensus 452 ~~~~~ 456 (463)
++++.
T Consensus 436 ~l~~~ 440 (442)
T PLN02208 436 ELQEY 440 (442)
T ss_pred HHHHh
Confidence 99653
No 19
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.9e-56 Score=441.50 Aligned_cols=433 Identities=24% Similarity=0.399 Sum_probs=306.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCC---eEEEEecCcchh-hhhhccCCCCCccCCCCCeEEEEcCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGI---KITFLNTEYYYD-RVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHP 80 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~ 80 (463)
+..||+++|+|++||++|++.||+.|+.+|. .||++.++.... ....... ......++++|..+|+...+...
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~---~~~~~~~~i~~~~lp~~~~p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLK---SLIASEPRIRLVTLPEVQDPPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHh---hcccCCCCeEEEECCCCCCCccc
Confidence 3569999999999999999999999999983 567777543221 1110000 00011235999999965421110
Q ss_pred C-CCCCHHHHHHHHHhhChHHHHHHHHcC-----C--C-CceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhh
Q 037374 81 R-TPDKFTELIDSLNLAIPPLLKEMVTDS-----N--S-PVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHC 151 (463)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~--~-~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 151 (463)
+ ........+..+...+.+.+++.++.+ . . ++++||+|.+.+|+..+|+++|||++.+++++++.+..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 0 011111222223333444555555443 0 1 35999999999999999999999999999999988776665
Q ss_pred hhhhhhcCCCCCCCCCcccccccccCCC-CCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCC-
Q 037374 152 IPNIIIAGELPIKGTEDMDRLITNVTGM-EGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGP- 229 (463)
Q Consensus 152 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~- 229 (463)
.+............. ... ....+|++ .. +...+++..+.... ....+.+.......++.+++||+.+||+.
T Consensus 159 ~~~~~~~~~~~~~~~-~~~-~~~~iPgl~~~-l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 159 LPERHRKTASEFDLS-SGE-EELPIPGFVNS-VPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHhccccccccccC-CCC-CeeECCCCCCC-CChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 543211000000000 000 11235665 23 55555554332211 12333344455677889999999998852
Q ss_pred ----------ce----eccccccccccCCCCCCCCCCCc-ccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHH
Q 037374 230 ----------IF----IGPLNAHLKVRIPEKTHSSSGLW-KVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYG 294 (463)
Q Consensus 230 ----------~~----vGpl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~a 294 (463)
.+ |||+.+...... ...+ ..++++.+|++.++.++||||||||....+.+++.+++.+
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~-------~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~ 304 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTS-------PNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQA 304 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccC-------CCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 11 999975432110 0111 2235799999988888999999999998999999999999
Q ss_pred HhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 295 LVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 295 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
|+..+.+|||+++.+..........+|++|.++..+++++++|+||.+||+|+++++||||||+||+.||+++|||||++
T Consensus 305 l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 305 LELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384 (475)
T ss_pred HHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEec
Confidence 99999999999974311000011247888988887888889999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHhhhcceecc-C-------ccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHH
Q 037374 375 PSFADQQINSRFVDEVWKLGLDIK-D-------LFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNL 446 (463)
Q Consensus 375 P~~~DQ~~na~rv~~~~G~g~~l~-~-------~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 446 (463)
|+++||+.||+++.+++|+|+.+. . .++.++|+++|+++|.++ ++||+||+++++.+++++.+||++.+++
T Consensus 385 P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~-~~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 385 PMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE-DVPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred cccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999987556799999885 2 469999999999999752 5899999999999999999999999999
Q ss_pred HHHHHHHHh
Q 037374 447 DRLVKDIKM 455 (463)
Q Consensus 447 ~~~i~~~~~ 455 (463)
++||++++.
T Consensus 464 ~~~v~~i~~ 472 (475)
T PLN02167 464 KRFIDDLLG 472 (475)
T ss_pred HHHHHHHHh
Confidence 999999875
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-55 Score=428.23 Aligned_cols=415 Identities=24% Similarity=0.401 Sum_probs=303.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcC--CCCCCC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVT--DGLPKD 78 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~--~~~~~~ 78 (463)
|+.. ++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+... ......+.+..+| ++++++
T Consensus 1 ~~~~-~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~-----~~~~~~v~~~~~p~~~glp~g 74 (453)
T PLN02764 1 MGGL-KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNL-----FPHNIVFRSVTVPHVDGLPVG 74 (453)
T ss_pred CCCC-CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccccc-----CCCCceEEEEECCCcCCCCCc
Confidence 5444 5899999999999999999999999999999999999876554433100 0001127777777 566554
Q ss_pred CCCC---CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 037374 79 HPRT---PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNI 155 (463)
Q Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (463)
.... .......+........+.+.++++.+ +||+||+|. ..|+..+|+.+|||.+.+++++++.+..+.. +.
T Consensus 75 ~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~- 149 (453)
T PLN02764 75 TETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG- 149 (453)
T ss_pred ccccccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc-
Confidence 2110 10111222222334667888888886 899999995 7899999999999999999999987765542 11
Q ss_pred hhcCCCCCCCCCcccccccccCCCCC---CcCCCCCCCccc--cCCcccHHHHHHHHHHhhhhccceEEecCcccccCCc
Q 037374 156 IIAGELPIKGTEDMDRLITNVTGMEG---FLRCRDLPSFCR--VNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPI 230 (463)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 230 (463)
...+. . .|++.. .+...+++.+.. .....+.......+.......++.+++||+.+||...
T Consensus 150 ---~~~~~--------~---~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~ 215 (453)
T PLN02764 150 ---GELGV--------P---PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNF 215 (453)
T ss_pred ---ccCCC--------C---CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHH
Confidence 00000 0 122210 022233332211 1011111222333333445678899999999998542
Q ss_pred e-------------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhh
Q 037374 231 F-------------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVN 297 (463)
Q Consensus 231 ~-------------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~ 297 (463)
. |||+...... . ...++++.+|||.+++++||||||||....+.+++.++..+|+.
T Consensus 216 ~~~~~~~~~~~v~~VGPL~~~~~~---------~--~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~ 284 (453)
T PLN02764 216 CDYIEKHCRKKVLLTGPVFPEPDK---------T--RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMEL 284 (453)
T ss_pred HHHHHhhcCCcEEEeccCccCccc---------c--ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 1 9999653210 0 01346799999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceE-EeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccc
Q 037374 298 SKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYI-AGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS 376 (463)
Q Consensus 298 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~-~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 376 (463)
.+.+++|++..+.... .....+|++|.++..++..+ .+|+||.+||+|+++++||||||+||+.||+++|||||++|+
T Consensus 285 s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~ 363 (453)
T PLN02764 285 TGSPFLVAVKPPRGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQ 363 (453)
T ss_pred CCCCeEEEEeCCCCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 9999999997431110 01125889998887665554 499999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHHhhhcceecc-C---ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHH
Q 037374 377 FADQQINSRFVDEVWKLGLDIK-D---LFDRNIVEKAVNDLMVK---RKEEFMESADQMANLAKKSVNEGGSLYCNLDRL 449 (463)
Q Consensus 377 ~~DQ~~na~rv~~~~G~g~~l~-~---~~~~~~l~~~i~~vl~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 449 (463)
+.||+.||+++++.+|+|+.+. + .++.++|+++|+++|++ ++.++|++++++++++++ ||++.+++++|
T Consensus 364 ~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~l 439 (453)
T PLN02764 364 LGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNF 439 (453)
T ss_pred ccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHH
Confidence 9999999999976789999875 2 58999999999999964 356799999999999865 89999999999
Q ss_pred HHHHHhc
Q 037374 450 VKDIKMM 456 (463)
Q Consensus 450 i~~~~~~ 456 (463)
|+++++.
T Consensus 440 v~~~~~~ 446 (453)
T PLN02764 440 IESLQDL 446 (453)
T ss_pred HHHHHHh
Confidence 9999874
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.3e-55 Score=425.88 Aligned_cols=407 Identities=23% Similarity=0.351 Sum_probs=295.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcC----CCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVT----DGLPKDHP 80 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~----~~~~~~~~ 80 (463)
++.||+++|+|++||++|++.||+.|+.+|++|||++++.+...+... + . ..+.++|..++ ++++++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~-~--~----~~~~i~~~~i~lP~~dGLP~g~e 75 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPL-N--L----FPDSIVFEPLTLPPVDGLPFGAE 75 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccc-c--c----CCCceEEEEecCCCcCCCCCccc
Confidence 457999999999999999999999999999999999998776655432 1 1 11236775543 45555421
Q ss_pred CCCCCH----HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 037374 81 RTPDKF----TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII 156 (463)
Q Consensus 81 ~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (463)
...++ ...+........+.+++++... +||+||+|. .+|+..+|+.+|||++.+++++++....+.+ +..
T Consensus 76 -~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~- 149 (446)
T PLN00414 76 -TASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRA- 149 (446)
T ss_pred -ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHh-
Confidence 11111 2222222333556667777665 899999995 7899999999999999999999987766554 110
Q ss_pred hcCCCCCCCCCcccccccccCCCCCCcCCCC--CCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCce---
Q 037374 157 IAGELPIKGTEDMDRLITNVTGMEGFLRCRD--LPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF--- 231 (463)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~--- 231 (463)
... .+.+ .++...-.+...+ ++.++.. ....+.+......+++.+++||+.+||....
T Consensus 150 ~~~-~~~p----------g~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 212 (446)
T PLN00414 150 ELG-FPPP----------DYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFI 212 (446)
T ss_pred hcC-CCCC----------CCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHH
Confidence 000 0000 0111000011111 1111110 0122333344556788999999999884322
Q ss_pred ----------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCc
Q 037374 232 ----------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG 301 (463)
Q Consensus 232 ----------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~ 301 (463)
|||+....... .. ...++.+.+|||.+++++||||||||....+.+++.++..+|+..+.+
T Consensus 213 ~~~~~~~v~~VGPl~~~~~~~--------~~-~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~ 283 (446)
T PLN00414 213 ERQCQRKVLLTGPMLPEPQNK--------SG-KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLP 283 (446)
T ss_pred HHhcCCCeEEEcccCCCcccc--------cC-cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCC
Confidence 99996432110 00 012356889999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEE-eccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchh
Q 037374 302 FLWVIRPDLISGKDGESQIPEEVVEATKERGYIA-GWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQ 380 (463)
Q Consensus 302 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~-~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ 380 (463)
|+|++..+...+ .....+|++|.++..++..++ +|+||.+||+|+++++||||||+||+.||+++|||||++|++.||
T Consensus 284 Flwvvr~~~~~~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ 362 (446)
T PLN00414 284 FLIAVMPPKGSS-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQ 362 (446)
T ss_pred eEEEEecCCCcc-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccch
Confidence 999997531110 011258999999887777666 999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceecc-C---ccCHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 381 QINSRFVDEVWKLGLDIK-D---LFDRNIVEKAVNDLMVK---RKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 381 ~~na~rv~~~~G~g~~l~-~---~~~~~~l~~~i~~vl~~---~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
+.||+++++++|+|+.+. . .++.++|+++|+++|.+ ++.++|++++++++.+.+. ||++ .++++||+++
T Consensus 363 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~s-s~l~~~v~~~ 438 (446)
T PLN00414 363 VLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLLS-GYADKFVEAL 438 (446)
T ss_pred HHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCcH-HHHHHHHHHH
Confidence 999999986799999995 2 48999999999999963 3467999999999998554 7743 5599999999
Q ss_pred Hh
Q 037374 454 KM 455 (463)
Q Consensus 454 ~~ 455 (463)
++
T Consensus 439 ~~ 440 (446)
T PLN00414 439 EN 440 (446)
T ss_pred HH
Confidence 65
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.3e-50 Score=400.74 Aligned_cols=408 Identities=15% Similarity=0.130 Sum_probs=289.0
Q ss_pred CCEEEEe-cCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCC---CCC----C
Q 037374 6 PAHVVIF-PLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTD---GLP----K 77 (463)
Q Consensus 6 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~---~~~----~ 77 (463)
..||+.+ |.++.+|+.-+.+|+++|++|||+||++++..... ... ....+++.+.++. .+. .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~---------~~~~~~~~i~~~~~~~~~~~~~~~ 89 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS---------HLCGNITEIDASLSVEYFKKLVKS 89 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc---------CCCCCEEEEEcCCChHHHHHHHhh
Confidence 4678866 77899999999999999999999999998743110 000 0112355555531 100 0
Q ss_pred C-CCC---CCCCHHH----HHHHHHhh-----ChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHh-CCceEEEecchh
Q 037374 78 D-HPR---TPDKFTE----LIDSLNLA-----IPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREV-GISIIYFCTVSA 143 (463)
Q Consensus 78 ~-~~~---~~~~~~~----~~~~~~~~-----~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~l-giP~v~~~~~~~ 143 (463)
. ... ...+... ....+... ..+.+.++++.-..++|+||+|.+..|+..+|+.+ ++|.|.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 90 SAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 0 000 0000000 11111111 24455667761023799999999888999999999 999988887655
Q ss_pred HHHHHHhhhh-hhhhcCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccC--CcccHHHHHH-H----HHHhhhhcc
Q 037374 144 CAFWSFHCIP-NIIIAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVN--NPMDLQLLLF-A----RETRLSVRA 215 (463)
Q Consensus 144 ~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~----~~~~~~~~~ 215 (463)
..... .... .+.++++.|.... ...++|.++.++.| +.......+.... ...+...+.. . ...+...+.
T Consensus 170 ~~~~~-~~~gg~p~~~syvP~~~~-~~~~~Msf~~R~~N-~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~ 246 (507)
T PHA03392 170 LAENF-ETMGAVSRHPVYYPNLWR-SKFGNLNVWETINE-IYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRV 246 (507)
T ss_pred chhHH-HhhccCCCCCeeeCCccc-CCCCCCCHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCC
Confidence 43322 2233 5566778887666 66778888888777 3211110000000 0111111111 1 112333567
Q ss_pred ceEEecCcccccCCce-------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCccc---CCH
Q 037374 216 GGLILNTFEDLEGPIF-------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAV---MSR 285 (463)
Q Consensus 216 ~~~l~~s~~~le~~~~-------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~---~~~ 285 (463)
+++|+|+++.++++++ |||+..+.... .+.++++.+|++.. ++++|||||||... .+.
T Consensus 247 ~l~lvns~~~~d~~rp~~p~v~~vGgi~~~~~~~-----------~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~ 314 (507)
T PHA03392 247 QLLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPP-----------QPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDN 314 (507)
T ss_pred cEEEEecCccccCCCCCCCCeeeecccccCCCCC-----------CCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCH
Confidence 8999999999999888 99987643211 14577899999854 56899999999863 567
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHH
Q 037374 286 DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESI 365 (463)
Q Consensus 286 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal 365 (463)
+.+..+++++++.+.++||+++.. ..+ ...|+|+++++|+||.+||+|+++++||||||+||++||+
T Consensus 315 ~~~~~~l~a~~~l~~~viw~~~~~---------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal 381 (507)
T PHA03392 315 EFLQMLLRTFKKLPYNVLWKYDGE---------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAI 381 (507)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCC---------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHH
Confidence 889999999999999999999632 111 1157899999999999999998888899999999999999
Q ss_pred HhCCccccccccchhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHH
Q 037374 366 MAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYC 444 (463)
Q Consensus 366 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 444 (463)
++|||+|++|++.||+.||+|++ ++|+|+.++ +++++++|.++|+++|+| ++|++||+++++.+++. .-+..+
T Consensus 382 ~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~~~t~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~---p~~~~~ 455 (507)
T PHA03392 382 DALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTVTVSAAQLVLAIVDVIEN--PKYRKNLKELRHLIRHQ---PMTPLH 455 (507)
T ss_pred HcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccCCcCHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC---CCCHHH
Confidence 99999999999999999999996 589999999 789999999999999999 99999999999999985 334567
Q ss_pred HHHHHHHHHHhcc
Q 037374 445 NLDRLVKDIKMMS 457 (463)
Q Consensus 445 ~~~~~i~~~~~~~ 457 (463)
.+...+|.+...+
T Consensus 456 ~av~~iE~v~r~~ 468 (507)
T PHA03392 456 KAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHHhCC
Confidence 7778888887754
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-51 Score=418.35 Aligned_cols=400 Identities=21% Similarity=0.278 Sum_probs=234.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC-CCCH
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT-PDKF 86 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~-~~~~ 86 (463)
||+++|. +.||+.++..|+++|++|||+||++++... ..+... ...++++..++...+...... ....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNPS---------KPSNIRFETYPDPYPEEEFEEIFPEF 70 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT---------------S-CCEEEE-----TT------TTH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-cccccc---------cccceeeEEEcCCcchHHHhhhhHHH
Confidence 7888885 779999999999999999999999987432 222210 111366666665443322111 1110
Q ss_pred --------------HHHHHHH---HhhCh---------HHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 87 --------------TELIDSL---NLAIP---------PLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 87 --------------~~~~~~~---~~~~~---------~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
...+..+ ..... ..+.+.++. .++|++|+|.+.+|+..+|+.+++|.+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s 148 (500)
T PF00201_consen 71 ISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISS 148 (500)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHH
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEec
Confidence 0111110 00001 111122333 2799999999998999999999999988755
Q ss_pred chhHHHHHHhhhhhhhhcCCCCCCCCCcccccccccCCCCCCcCCCCCCCc----cccC---CcccHHHHHHHHHHhhhh
Q 037374 141 VSACAFWSFHCIPNIIIAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSF----CRVN---NPMDLQLLLFARETRLSV 213 (463)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~ 213 (463)
..+...........+.++++.|.... +..+.+.++.++.| +........ +... ...... .......+.+.
T Consensus 149 ~~~~~~~~~~~~g~p~~psyvP~~~s-~~~~~msf~~Ri~N-~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 225 (500)
T PF00201_consen 149 STPMYDLSSFSGGVPSPPSYVPSMFS-DFSDRMSFWQRIKN-FLFYLYFRFIFRYFFSPQDKLYKKYF-GFPFSFRELLS 225 (500)
T ss_dssp CCSCSCCTCCTSCCCTSTTSTTCBCC-CSGTTSSSST--TT-SHHHHHHHHHHHHGGGS-TTS-EEES-S-GGGCHHHHH
T ss_pred ccccchhhhhccCCCCChHHhccccc-cCCCccchhhhhhh-hhhhhhhccccccchhhHHHHHhhhc-ccccccHHHHH
Confidence 44332111111123345677776655 66677777777777 221100000 0000 000000 00001122235
Q ss_pred ccceEEecCcccccCCce-------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCH-
Q 037374 214 RAGGLILNTFEDLEGPIF-------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSR- 285 (463)
Q Consensus 214 ~~~~~l~~s~~~le~~~~-------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~- 285 (463)
+.+++++|+.+.+++|++ ||++...+.. +.++++.+|++...++++|||||||.....+
T Consensus 226 ~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~-------------~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~ 292 (500)
T PF00201_consen 226 NASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAK-------------PLPEELWNFLDSSGKKGVVYVSFGSIVSSMPE 292 (500)
T ss_dssp HHHHCCSSTEEE----HHHHCTSTTGCGC-S-----------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HH
T ss_pred HHHHHhhhccccCcCCcchhhcccccCcccccccc-------------ccccccchhhhccCCCCEEEEecCcccchhHH
Confidence 567889999999998887 8998765431 3456788899865688999999999985444
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHH
Q 037374 286 DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESI 365 (463)
Q Consensus 286 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal 365 (463)
+..+.++++|++++.++||++.+. .+.. +++|+++++|+||.+||+|+++++||||||+||+.||+
T Consensus 293 ~~~~~~~~~~~~~~~~~iW~~~~~----------~~~~----l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~ 358 (500)
T PF00201_consen 293 EKLKEIAEAFENLPQRFIWKYEGE----------PPEN----LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEAL 358 (500)
T ss_dssp HHHHHHHHHHHCSTTEEEEEETCS----------HGCH----HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHH
T ss_pred HHHHHHHHHHhhCCCccccccccc----------cccc----ccceEEEeccccchhhhhcccceeeeeccccchhhhhh
Confidence 458889999999999999999631 1111 56899999999999999999999999999999999999
Q ss_pred HhCCccccccccchhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHH
Q 037374 366 MAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYC 444 (463)
Q Consensus 366 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 444 (463)
++|||||++|+++||+.||+++++ .|+|+.++ +++|+++|.++|+++|+| ++|++||+++++.+++.. -+..+
T Consensus 359 ~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~~~~~~l~~ai~~vl~~--~~y~~~a~~ls~~~~~~p---~~p~~ 432 (500)
T PF00201_consen 359 YHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKNDLTEEELRAAIREVLEN--PSYKENAKRLSSLFRDRP---ISPLE 432 (500)
T ss_dssp HCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC-SHHHHHHHHHHHHHS--HHHHHHHHHHHHTTT-----------
T ss_pred hccCCccCCCCcccCCccceEEEE-EeeEEEEEecCCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcCC---CCHHH
Confidence 999999999999999999999965 79999999 899999999999999999 999999999999999863 35567
Q ss_pred HHHHHHHHHHhc
Q 037374 445 NLDRLVKDIKMM 456 (463)
Q Consensus 445 ~~~~~i~~~~~~ 456 (463)
.+...||.+.+.
T Consensus 433 ~~~~~ie~v~~~ 444 (500)
T PF00201_consen 433 RAVWWIEYVARH 444 (500)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhc
Confidence 778888888773
No 24
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=9.1e-43 Score=344.26 Aligned_cols=372 Identities=15% Similarity=0.154 Sum_probs=240.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCC------
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHP------ 80 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~------ 80 (463)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+.. .| ++|..+++.......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G-----------~~~~~~~~~~~~~~~~~~~~~ 68 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AG-----------LEFVPVGGDPDELLASPERNA 68 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cC-----------CceeeCCCCHHHHHhhhhhcc
Confidence 699999999999999999999999999999999999776665554 55 777777753221100
Q ss_pred ----CCCCCHHHHHHHHHhhChHHHHHHHHcC-CCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhh
Q 037374 81 ----RTPDKFTELIDSLNLAIPPLLKEMVTDS-NSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNI 155 (463)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 155 (463)
............+.......++++++.+ ..+||+||+|.+.+++..+|+.+|||++.+++++...... .+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~---~~~- 144 (401)
T cd03784 69 GLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA---FPP- 144 (401)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc---CCC-
Confidence 0011111222223333333444444432 3599999999988899999999999999998876542110 000
Q ss_pred hhcCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHh--h----hhccceEEecCcccccCC
Q 037374 156 IIAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETR--L----SVRAGGLILNTFEDLEGP 229 (463)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~s~~~le~~ 229 (463)
|. . ......... .... .+ ............+... . .......+....+.+.++
T Consensus 145 ------~~--~-~~~~~~~~~------~~~~---~~---~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 145 ------PL--G-RANLRLYAL------LEAE---LW---QDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred ------cc--c-hHHHHHHHH------HHHH---HH---HHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 00 0 000000000 0000 00 0000000000000000 0 000111222222221111
Q ss_pred ---ce-----ec-cccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCC-HHHHHHHHHHHhhCC
Q 037374 230 ---IF-----IG-PLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMS-RDQLIVFYYGLVNSK 299 (463)
Q Consensus 230 ---~~-----vG-pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~-~~~~~~~~~al~~~~ 299 (463)
++ +| ++...+. ....++++..|++. ++++|||++||..... ...+..+++++...+
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~ 269 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPY------------NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLG 269 (401)
T ss_pred CCCccccCcEeCCCCCCCCC------------CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcC
Confidence 11 33 3221111 01345567778864 6789999999998644 467788999999999
Q ss_pred CcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccch
Q 037374 300 NGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFAD 379 (463)
Q Consensus 300 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~D 379 (463)
.+++|+.+..... . ...++|+++.+|+||.++|++|++ ||||||+||++||+++|||+|++|+..|
T Consensus 270 ~~~i~~~g~~~~~------~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~d 335 (401)
T cd03784 270 QRAILSLGWGGLG------A------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGD 335 (401)
T ss_pred CeEEEEccCcccc------c------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCC
Confidence 9999998643111 1 115689999999999999999999 9999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Q 037374 380 QQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452 (463)
Q Consensus 380 Q~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 452 (463)
|+.||+++. ++|+|+.++ ..++.++|.++|.++|++ + ++++++++++.+++. +| ...+.++|+.
T Consensus 336 Q~~~a~~~~-~~G~g~~l~~~~~~~~~l~~al~~~l~~--~-~~~~~~~~~~~~~~~---~g--~~~~~~~ie~ 400 (401)
T cd03784 336 QPFWAARVA-ELGAGPALDPRELTAERLAAALRRLLDP--P-SRRRAAALLRRIREE---DG--VPSAADVIER 400 (401)
T ss_pred cHHHHHHHH-HCCCCCCCCcccCCHHHHHHHHHHHhCH--H-HHHHHHHHHHHHHhc---cC--HHHHHHHHhh
Confidence 999999995 589999998 678999999999999995 4 666777888887765 44 5666777664
No 25
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-41 Score=335.08 Aligned_cols=376 Identities=18% Similarity=0.230 Sum_probs=245.3
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC-C--CCCHHH
Q 037374 12 FPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR-T--PDKFTE 88 (463)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~-~--~~~~~~ 88 (463)
+++|+.||++|+++||++|++|||+|+|++++.+.+.+.+ .| ++|..++......... . ..+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AG-----------AEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cC-----------CEEEecCCcCccccccccccCcchHH
Confidence 4689999999999999999999999999999887777766 45 7788877543321100 0 022333
Q ss_pred HHHHHHhhChHHHHHHHHcC-CCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCCCCCCC
Q 037374 89 LIDSLNLAIPPLLKEMVTDS-NSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPIKGTE 167 (463)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~-~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 167 (463)
.+..+.......+..+.+.+ ..+||+||+|.+++++..+|+.+|||+|.+++.+... ..++... .|....
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~~~~- 139 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPAGEG- 139 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cccchh-
Confidence 33333332233333333222 3499999999998899999999999999986543211 1111100 111100
Q ss_pred cccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCc--------eeccccccc
Q 037374 168 DMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPI--------FIGPLNAHL 239 (463)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~--------~vGpl~~~~ 239 (463)
+.......+...+ -....+..+........ ....... .......+..+.+.|+++. ++||+....
T Consensus 140 -~~~~~~~~~~~~~-~~~~~~~~~r~~~gl~~---~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~ 212 (392)
T TIGR01426 140 -SAEEGAIAERGLA-EYVARLSALLEEHGITT---PPVEFLA--APRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDR 212 (392)
T ss_pred -hhhhhccccchhH-HHHHHHHHHHHHhCCCC---CCHHHHh--cCCcCcEEEeCChHhCCCccccCCCeEEECCCCCCc
Confidence 0000000000000 00000000000000000 0000000 0122234455555454322 188876432
Q ss_pred cccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCC
Q 037374 240 KVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQ 319 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 319 (463)
.. ...|.....++++||||+||........+..+++++.+.+.+++|..+...
T Consensus 213 ~~------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~--------- 265 (392)
T TIGR01426 213 KE------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGV--------- 265 (392)
T ss_pred cc------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCC---------
Confidence 11 112665566789999999998766777888999999999999999885321
Q ss_pred CchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-
Q 037374 320 IPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK- 398 (463)
Q Consensus 320 ~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~- 398 (463)
....+ +..++|+.+.+|+||.++|+++++ ||||||+||+.||+++|+|+|++|...||+.||+++. ++|+|..+.
T Consensus 266 ~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~-~~g~g~~l~~ 341 (392)
T TIGR01426 266 DPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIA-ELGLGRHLPP 341 (392)
T ss_pred ChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHH-HCCCEEEecc
Confidence 01111 125689999999999999999999 9999999999999999999999999999999999995 589999998
Q ss_pred CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 399 DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 399 ~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
..+++++|.++|.++|+| ++|+++++++++.+++. +| ...+.++|+.+
T Consensus 342 ~~~~~~~l~~ai~~~l~~--~~~~~~~~~l~~~~~~~---~~--~~~aa~~i~~~ 389 (392)
T TIGR01426 342 EEVTAEKLREAVLAVLSD--PRYAERLRKMRAEIREA---GG--ARRAADEIEGF 389 (392)
T ss_pred ccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHc---CC--HHHHHHHHHHh
Confidence 789999999999999999 99999999999999986 54 35555555554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-42 Score=334.54 Aligned_cols=383 Identities=21% Similarity=0.283 Sum_probs=245.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCC----CCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKD----HPR 81 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~----~~~ 81 (463)
+|||+++..|+.||++|+++|+++|.++||+|+|++++.+.+.++++ | +.|..++...... ...
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a-g-----------~~f~~~~~~~~~~~~~~~~~ 68 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA-G-----------LAFVAYPIRDSELATEDGKF 68 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh-C-----------cceeeccccCChhhhhhhhh
Confidence 58999999999999999999999999999999999998888888775 3 4455544321111 111
Q ss_pred C-CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHh-hhhhhhhcC
Q 037374 82 T-PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFH-CIPNIIIAG 159 (463)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~ 159 (463)
. ...+...+..+.. ....+.+++.+. .||+|+.|...+.+ .+++..++|++.............. ..+.....+
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 69 AGVKSFRRLLQQFKK-LIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred hccchhHHHhhhhhh-hhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 1 1112212222222 333444555655 99999999766655 8999999999886554433211100 000000000
Q ss_pred CCCCCCCCcccccccccCCCCCCcCCCCCCCccccCC--cccHHHHHHHH-HHhhhhccceEEecCcccccCC---ce--
Q 037374 160 ELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNN--PMDLQLLLFAR-ETRLSVRAGGLILNTFEDLEGP---IF-- 231 (463)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~le~~---~~-- 231 (463)
..+.. ...++ ................. +....+....+ ....+...........+....+ .+
T Consensus 145 ~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 214 (406)
T COG1819 145 KLPIP--------LYPLP--PRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFI 214 (406)
T ss_pred ccccc--------ccccC--hhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCC
Confidence 00000 00000 00000000000000000 00000000000 0000111111111111111111 11
Q ss_pred ---eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcC
Q 037374 232 ---IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRP 308 (463)
Q Consensus 232 ---vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 308 (463)
+||+.... ..++..|. ..++++||+|+||.... .+++..+++++..++.+++....+
T Consensus 215 ~~~~~~~~~~~-----------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~ 274 (406)
T COG1819 215 GPYIGPLLGEA-----------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG 274 (406)
T ss_pred cCccccccccc-----------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc
Confidence 44443221 22222342 45789999999999977 899999999999999999999853
Q ss_pred CCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHH
Q 037374 309 DLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVD 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 388 (463)
. .. ...+ .|+|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+
T Consensus 275 -~-----~~-~~~~-----~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv- 339 (406)
T COG1819 275 -A-----RD-TLVN-----VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV- 339 (406)
T ss_pred -c-----cc-cccc-----CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-
Confidence 1 00 1122 6789999999999999999999 999999999999999999999999999999999999
Q ss_pred Hhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHhc
Q 037374 389 EVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKMM 456 (463)
Q Consensus 389 ~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~~ 456 (463)
+++|+|..+. ..++++.|+++|+++|+| +.|+++++++++.++++ +| .+.+.++++++...
T Consensus 340 e~~G~G~~l~~~~l~~~~l~~av~~vL~~--~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 340 EELGAGIALPFEELTEERLRAAVNEVLAD--DSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred HHcCCceecCcccCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 4689999998 799999999999999999 99999999999999998 55 67777888876553
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.1e-39 Score=329.11 Aligned_cols=418 Identities=27% Similarity=0.383 Sum_probs=254.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCcc-CCCCCeEEEEcCCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRY-MQIPGLQLKTVTDGLPKDHPRTPD 84 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~i~~~~~~~~~~~~~ 84 (463)
..+++++++|+.||++|+..||+.|+++||+||++.+.......... ....... .....+.+...++.++........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 45788888899999999999999999999999999986554433221 1000000 000011111111222222110000
Q ss_pred CHHHHHHHHHhhChHHHHHHHHcC----CCCceEEEEcCccchHHHHHHHhC-CceEEEecchhHHHHHHhhhhhhhhcC
Q 037374 85 KFTELIDSLNLAIPPLLKEMVTDS----NSPVNYIIADGYMSHAIDVAREVG-ISIIYFCTVSACAFWSFHCIPNIIIAG 159 (463)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~----~~~pDlIi~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (463)
........+...+...+++....+ ..++|++|+|.+..+...++.... ++...+.+..+.........+ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~ 159 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP----LS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc----cc
Confidence 111112233333333443322222 234999999998667777776665 888888777776543222111 12
Q ss_pred CCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcc---cHHHHHH--------HHHHhhhhccceEEecCcccccC
Q 037374 160 ELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPM---DLQLLLF--------ARETRLSVRAGGLILNTFEDLEG 228 (463)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~l~~s~~~le~ 228 (463)
+.|..........+....+..+ +....++......... ....... ......+.+.+..++|+...++.
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPN-LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred ccCcccCccccccCcHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 3332221000012222222222 1111111111000000 0000000 00112234556888888877665
Q ss_pred -Cce-------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCC--CeEEEEeccCcc---cCCHHHHHHHHHHH
Q 037374 229 -PIF-------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPK--QSVIYVSFGSVA---VMSRDQLIVFYYGL 295 (463)
Q Consensus 229 -~~~-------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~v~vslGs~~---~~~~~~~~~~~~al 295 (463)
+.+ |||+....... ......+|++..+. +++|||||||.. .++.++...++.++
T Consensus 239 ~~~~~~~~v~~IG~l~~~~~~~-------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l 305 (496)
T KOG1192|consen 239 EPRPLLPKVIPIGPLHVKDSKQ-------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKAL 305 (496)
T ss_pred CCCCCCCCceEECcEEecCccc-------------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHH
Confidence 432 99998763211 01134457665544 499999999998 78999999999999
Q ss_pred hhC-CCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhh-hcccCcceeeeccChhhHHHHHHhCCcccc
Q 037374 296 VNS-KNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEV-LAHKAVGGFLIHCGWNSTLESIMAGMPMIC 373 (463)
Q Consensus 296 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~i-L~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 373 (463)
++. +..|+|++...... .+++++.++.+.||.+.+|+||.++ |.|.++++||||||+||++|++++|||||+
T Consensus 306 ~~~~~~~FiW~~~~~~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 306 ESLQGVTFLWKYRPDDSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVC 379 (496)
T ss_pred HhCCCceEEEEecCCcch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceec
Confidence 999 88899999743110 1223322111358888999999998 599999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Q 037374 374 WPSFADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452 (463)
Q Consensus 374 ~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 452 (463)
+|+++||+.||++++++ |.+..+. .+++.+.+..++.+++++ ++|+++++++++.+++. ..+. +.+...+|.
T Consensus 380 ~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~--~~y~~~~~~l~~~~~~~---p~~~-~~~~~~~e~ 452 (496)
T KOG1192|consen 380 VPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN--EEYKEAAKRLSEILRDQ---PISP-ELAVKWVEF 452 (496)
T ss_pred CCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC--hHHHHHHHHHHHHHHcC---CCCH-HHHHHHHHH
Confidence 99999999999999875 5555555 667666699999999999 99999999999999975 4444 455544454
Q ss_pred HHh
Q 037374 453 IKM 455 (463)
Q Consensus 453 ~~~ 455 (463)
...
T Consensus 453 ~~~ 455 (496)
T KOG1192|consen 453 VAR 455 (496)
T ss_pred HHh
Confidence 444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.2e-25 Score=215.81 Aligned_cols=314 Identities=15% Similarity=0.154 Sum_probs=191.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh-hhhhccCCCCCccCCCCCeEEEEcCCC-CCCCCCCCCC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD-RVIRHSSDGFSRYMQIPGLQLKTVTDG-LPKDHPRTPD 84 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~i~~~-~~~~~~~~~~ 84 (463)
-||++.+.||.||++|.++||++|.++||+|+|++.+.-.+ ++.+.. ++.++.++.. +.. ..
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~-----------g~~~~~~~~~~l~~-----~~ 65 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKE-----------NIPYYSISSGKLRR-----YF 65 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCccc-----------CCcEEEEeccCcCC-----Cc
Confidence 37899999999999999999999999999999999754322 222222 2666666531 111 10
Q ss_pred CHHHHHHHHHhh--ChHHHHHHHHcCCCCceEEEEcCccc--hHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCC
Q 037374 85 KFTELIDSLNLA--IPPLLKEMVTDSNSPVNYIIADGYMS--HAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGE 160 (463)
Q Consensus 85 ~~~~~~~~~~~~--~~~~l~~~l~~~~~~pDlIi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
. ...+...... ..-....++++. +||+|++...+. .+..+|..+++|+++......
T Consensus 66 ~-~~~~~~~~~~~~~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~----------------- 125 (352)
T PRK12446 66 D-LKNIKDPFLVMKGVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT----------------- 125 (352)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC-----------------
Confidence 1 1112221111 222344567776 999999877555 468899999999988533211
Q ss_pred CCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCc---ccccCC--ceeccc
Q 037374 161 LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTF---EDLEGP--IFIGPL 235 (463)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~---~~le~~--~~vGpl 235 (463)
+++.|++..+ .++.++.... ..++.. ..+|+.
T Consensus 126 ----------------~g~~nr~~~~---------------------------~a~~v~~~f~~~~~~~~~~k~~~tG~P 162 (352)
T PRK12446 126 ----------------PGLANKIALR---------------------------FASKIFVTFEEAAKHLPKEKVIYTGSP 162 (352)
T ss_pred ----------------ccHHHHHHHH---------------------------hhCEEEEEccchhhhCCCCCeEEECCc
Confidence 1111100000 0011111000 001111 125633
Q ss_pred cccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCH-HHHHHHHHHHhhCCCcEEEEEcCCCCCCC
Q 037374 236 NAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSR-DQLIVFYYGLVNSKNGFLWVIRPDLISGK 314 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 314 (463)
..+.-.. ...+...+.+.-..++++|+|..||...... +.+..++..+.. +.+++|+++.+.
T Consensus 163 vr~~~~~------------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---- 225 (352)
T PRK12446 163 VREEVLK------------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---- 225 (352)
T ss_pred CCccccc------------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch----
Confidence 2111000 0011111112213467899999999986444 334444444432 478888886421
Q ss_pred CCCCCCchhHHHHhcCCceEEecc-C-hHhhhcccCcceeeeccChhhHHHHHHhCCcccccccc-----chhhhHHHHH
Q 037374 315 DGESQIPEEVVEATKERGYIAGWV-P-QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF-----ADQQINSRFV 387 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~nv~~~~~v-p-q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~rv 387 (463)
+.. ..+. ..++.+.+|+ + ..++++.+++ +|||||.+|+.|++++|+|+|++|+. .||..||+++
T Consensus 226 -----~~~-~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 226 -----LDD-SLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred -----HHH-HHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 111 1111 1356667888 5 4569999999 99999999999999999999999974 4899999999
Q ss_pred HHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 037374 388 DEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQ 427 (463)
Q Consensus 388 ~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~ 427 (463)
.+ .|+|..+. ++++++.|.+++.++++|. +.+++++++
T Consensus 297 ~~-~g~~~~l~~~~~~~~~l~~~l~~ll~~~-~~~~~~~~~ 335 (352)
T PRK12446 297 ER-QGYASVLYEEDVTVNSLIKHVEELSHNN-EKYKTALKK 335 (352)
T ss_pred HH-CCCEEEcchhcCCHHHHHHHHHHHHcCH-HHHHHHHHH
Confidence 65 79999998 8899999999999999861 355544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.2e-24 Score=208.14 Aligned_cols=298 Identities=17% Similarity=0.184 Sum_probs=182.2
Q ss_pred CEEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 7 AHVVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 7 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
|||+|...+ |.||+..+++||++| |||+|+|++.....+.+.+. +....+++.......... +
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-------------FPVREIPGLGPIQENGRL-D 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-------------cCEEEccCceEeccCCcc-c
Confidence 799998877 889999999999999 69999999986554443222 233333321111111111 1
Q ss_pred HHHHHHHHH------hhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcC
Q 037374 86 FTELIDSLN------LAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAG 159 (463)
Q Consensus 86 ~~~~~~~~~------~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 159 (463)
......... ......+.++++.. +||+||+| +.+.+..+|+..|+|++.+......... ....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~~-~~~~------- 133 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREF--RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLHP-NFWL------- 133 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcccc-cCCc-------
Confidence 111111111 11222334445554 99999999 4555788999999999998766543200 0000
Q ss_pred CCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHh--hhhccceEEecCccc-c--cC-Cceec
Q 037374 160 ELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETR--LSVRAGGLILNTFED-L--EG-PIFIG 233 (463)
Q Consensus 160 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~s~~~-l--e~-~~~vG 233 (463)
+... . ......+... ....++..+.-++.. . .. ...+|
T Consensus 134 --~~~~--~--------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 177 (318)
T PF13528_consen 134 --PWDQ--D--------------------------------FGRLIERYIDRYHFPPADRRLALSFYPPLPPFFRVPFVG 177 (318)
T ss_pred --chhh--h--------------------------------HHHHHHHhhhhccCCcccceecCCccccccccccccccC
Confidence 0000 0 0000000000 012222222222220 0 00 11166
Q ss_pred cccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCC
Q 037374 234 PLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSK-NGFLWVIRPDLIS 312 (463)
Q Consensus 234 pl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~ 312 (463)
|+....... .. ..+++.|+|++|..... .++++++..+ +.+++. +...
T Consensus 178 p~~~~~~~~--------------------~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-- 226 (318)
T PF13528_consen 178 PIIRPEIRE--------------------LP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-- 226 (318)
T ss_pred chhcccccc--------------------cC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--
Confidence 654322110 10 12566799999977633 6667777766 555555 3221
Q ss_pred CCCCCCCCchhHHHHhcCCceEEecc-C-hHhhhcccCcceeeeccChhhHHHHHHhCCccccccc--cchhhhHHHHHH
Q 037374 313 GKDGESQIPEEVVEATKERGYIAGWV-P-QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS--FADQQINSRFVD 388 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~nv~~~~~v-p-q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~ 388 (463)
.+ ..++|+.+.+|. + ..++|+.|++ +|+|||.||++|++++|+|+|++|. ..||..||+++.
T Consensus 227 --------~~----~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~ 292 (318)
T PF13528_consen 227 --------AD----PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLE 292 (318)
T ss_pred --------cc----ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHH
Confidence 00 025799999987 3 5669999999 9999999999999999999999999 789999999995
Q ss_pred Hhhhcceecc-CccCHHHHHHHHHHH
Q 037374 389 EVWKLGLDIK-DLFDRNIVEKAVNDL 413 (463)
Q Consensus 389 ~~~G~g~~l~-~~~~~~~l~~~i~~v 413 (463)
++|+|+.++ ++++++.|+++|.++
T Consensus 293 -~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 293 -ELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred -HCCCeEEcccccCCHHHHHHHHhcC
Confidence 689999998 899999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.5e-23 Score=194.95 Aligned_cols=304 Identities=17% Similarity=0.204 Sum_probs=188.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCC-eEEEEecCcchh-hhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGI-KITFLNTEYYYD-RVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPD 84 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~ 84 (463)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+ .+.+.. ++.++.++......... ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~-----------~~~~~~I~~~~~~~~~~-~~ 68 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY-----------GIEFELIPSGGLRRKGS-LK 68 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecccc-----------CceEEEEecccccccCc-HH
Confidence 47899999999999999999999999999 588886644322 332222 37777776432222110 11
Q ss_pred CHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc--hHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCC
Q 037374 85 KFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS--HAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELP 162 (463)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (463)
.....+..+. ...+.+.++++. +||+||.-..++ .+..+|..+|||+++.-.
T Consensus 69 ~~~~~~~~~~--~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq---------------------- 122 (357)
T COG0707 69 LLKAPFKLLK--GVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ---------------------- 122 (357)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEec----------------------
Confidence 1111222222 345667888887 999999865555 667899999999998522
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCccccc---C---Cceec-cc
Q 037374 163 IKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLE---G---PIFIG-PL 235 (463)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le---~---~~~vG-pl 235 (463)
+..+++.|++..+. ++.+ ..+++..+ . ...+| |+
T Consensus 123 -----------n~~~G~ank~~~~~---------------------------a~~V-~~~f~~~~~~~~~~~~~~tG~Pv 163 (357)
T COG0707 123 -----------NAVPGLANKILSKF---------------------------AKKV-ASAFPKLEAGVKPENVVVTGIPV 163 (357)
T ss_pred -----------CCCcchhHHHhHHh---------------------------hcee-eeccccccccCCCCceEEecCcc
Confidence 12222222111110 0000 11111000 0 01133 33
Q ss_pred cccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCH-HHHHHHHHHHhhCCCcEEEEEcCCCCCCC
Q 037374 236 NAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSR-DQLIVFYYGLVNSKNGFLWVIRPDLISGK 314 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 314 (463)
...-. ..+..-..+.. ..++++|+|+-||.....- +.+..++..+.+ +..+++..+.+.
T Consensus 164 r~~~~--------------~~~~~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~---- 223 (357)
T COG0707 164 RPEFE--------------ELPAAEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND---- 223 (357)
T ss_pred cHHhh--------------ccchhhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch----
Confidence 22111 00000111111 2268899999999985332 223333434333 467777775321
Q ss_pred CCCCCCchhHHHHhc-CC-ceEEeccCh-HhhhcccCcceeeeccChhhHHHHHHhCCcccccccc----chhhhHHHHH
Q 037374 315 DGESQIPEEVVEATK-ER-GYIAGWVPQ-EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF----ADQQINSRFV 387 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~-~n-v~~~~~vpq-~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~----~DQ~~na~rv 387 (463)
.+....... .+ +.+.+|.++ ..+++.+|+ +||++|.+|+.|+++.|+|+|.+|+. .||..||..+
T Consensus 224 ------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 224 ------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred ------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 122222121 23 777799986 559999999 99999999999999999999999973 4899999999
Q ss_pred HHhhhcceecc-CccCHHHHHHHHHHHHhH
Q 037374 388 DEVWKLGLDIK-DLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 388 ~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~ 416 (463)
. +.|.|..++ .++|.+.|.+.|.+++++
T Consensus 296 ~-~~gaa~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 296 E-KAGAALVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred H-hCCCEEEeccccCCHHHHHHHHHHHhcC
Confidence 5 579999999 789999999999999984
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.2e-22 Score=193.83 Aligned_cols=305 Identities=13% Similarity=0.143 Sum_probs=170.0
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeE-EEEcCCCCCCCCCCCCCC
Q 037374 8 HVVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQ-LKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~i~~~~~~~~~~~~~~ 85 (463)
||++...+ +.||+.|.++|+++|.+ ||+|+|+++.. ...+.+..+ +. +..+|........... +
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~-~~~~~~~~~-----------~~~~~~~p~~~~~~~~~~~-~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR-SKNYISKYG-----------FKVFETFPGIKLKGEDGKV-N 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC-HHHhhhhhc-----------CcceeccCCceEeecCCcC-c
Confidence 57776666 45999999999999999 99999998866 444433323 21 2222210000000001 1
Q ss_pred HHHHHH---HHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCC
Q 037374 86 FTELID---SLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELP 162 (463)
Q Consensus 86 ~~~~~~---~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 162 (463)
....+. .+.........+++++. +||+||+| +.+.+..+|+.+|||++.+..+.... .+..
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------~~~~------- 130 (321)
T TIGR00661 67 IVKTLRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------YPLK------- 130 (321)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------CCcc-------
Confidence 122221 11011222345666666 99999999 67777999999999999876532110 0000
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCccccc--CCceecccccccc
Q 037374 163 IKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLE--GPIFIGPLNAHLK 240 (463)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le--~~~~vGpl~~~~~ 240 (463)
. + . ..+........+ ...++.++...++... .|..++.+ .
T Consensus 131 --------------------~--~----~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~----~ 172 (321)
T TIGR00661 131 --------------------T--D----L------IVYPTMAALRIF--NERCERFIVPDYPFPYTICPKIIKNM----E 172 (321)
T ss_pred --------------------c--c----h------hHHHHHHHHHHh--ccccceEeeecCCCCCCCCccccccC----C
Confidence 0 0 0 000000000110 0111122222111100 00000000 0
Q ss_pred ccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCC-cEEEEEcCCCCCCCCCCCC
Q 037374 241 VRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKN-GFLWVIRPDLISGKDGESQ 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~ 319 (463)
. + .....+.+|. ...++.|+|.+|+.. ...+++++.+.+. .+++ ...+ .
T Consensus 173 ~---~---------~~~~~~~~~~--~~~~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i~-~~~~---------~ 222 (321)
T TIGR00661 173 G---P---------LIRYDVDDVD--NYGEDYILVYIGFEY------RYKILELLGKIANVKFVC-YSYE---------V 222 (321)
T ss_pred C---c---------ccchhhhccc--cCCCCcEEEECCcCC------HHHHHHHHHhCCCeEEEE-eCCC---------C
Confidence 0 0 0001111222 223566778888754 2455677776653 3332 2111 1
Q ss_pred CchhHHHHhcCCceEEeccC--hHhhhcccCcceeeeccChhhHHHHHHhCCcccccccc--chhhhHHHHHHHhhhcce
Q 037374 320 IPEEVVEATKERGYIAGWVP--QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF--ADQQINSRFVDEVWKLGL 395 (463)
Q Consensus 320 ~~~~~~~~~~~nv~~~~~vp--q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~~G~g~ 395 (463)
... ..++|+.+.+|.| ..++|+.|++ +|||||.+|++||+++|+|++++|.. .||..||+.++ ++|+|+
T Consensus 223 ~~~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~ 295 (321)
T TIGR00661 223 AKN----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGI 295 (321)
T ss_pred Ccc----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEE
Confidence 111 1357999999997 4668899999 99999999999999999999999985 49999999996 589999
Q ss_pred ecc-CccCHHHHHHHHHHHHhHhHHHHH
Q 037374 396 DIK-DLFDRNIVEKAVNDLMVKRKEEFM 422 (463)
Q Consensus 396 ~l~-~~~~~~~l~~~i~~vl~~~~~~~~ 422 (463)
.++ .++ ++.+++.++++| +.|+
T Consensus 296 ~l~~~~~---~~~~~~~~~~~~--~~~~ 318 (321)
T TIGR00661 296 ALEYKEL---RLLEAILDIRNM--KRYK 318 (321)
T ss_pred EcChhhH---HHHHHHHhcccc--cccc
Confidence 997 444 566666677776 5553
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.83 E-value=3.4e-18 Score=166.29 Aligned_cols=318 Identities=15% Similarity=0.127 Sum_probs=182.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh-hhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD-RVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPD 84 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~ 84 (463)
||||++++.+..||...++.|+++|.++||+|++++.+.... ...+. .+++++.++..-.. ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-----------~g~~~~~~~~~~~~-----~~ 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-----------AGIEFHFIPSGGLR-----RK 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-----------CCCcEEEEeccCcC-----CC
Confidence 589999999888999999999999999999999998854211 11010 12555555421000 11
Q ss_pred CHHHHHHHHHh--hChHHHHHHHHcCCCCceEEEEcCcc--chHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCC
Q 037374 85 KFTELIDSLNL--AIPPLLKEMVTDSNSPVNYIIADGYM--SHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGE 160 (463)
Q Consensus 85 ~~~~~~~~~~~--~~~~~l~~~l~~~~~~pDlIi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
.....+..... .....+..++++. +||+|++.... +.+..++...++|++....... +
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---------~------- 126 (357)
T PRK00726 65 GSLANLKAPFKLLKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV---------P------- 126 (357)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC---------c-------
Confidence 11111111111 1233456667776 99999998633 3456678888999986421100 0
Q ss_pred CCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccc-----cCCceeccc
Q 037374 161 LPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDL-----EGPIFIGPL 235 (463)
Q Consensus 161 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l-----e~~~~vGpl 235 (463)
....++ . .. .++.++..+...+ +....+|.-
T Consensus 127 -------~~~~r~--~--------~~---------------------------~~d~ii~~~~~~~~~~~~~~i~vi~n~ 162 (357)
T PRK00726 127 -------GLANKL--L--------AR---------------------------FAKKVATAFPGAFPEFFKPKAVVTGNP 162 (357)
T ss_pred -------cHHHHH--H--------HH---------------------------HhchheECchhhhhccCCCCEEEECCC
Confidence 000000 0 00 0000000000000 000003321
Q ss_pred cccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCC--cEEEEEcCCCCCC
Q 037374 236 NAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKN--GFLWVIRPDLISG 313 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~ 313 (463)
...... ..+..-.++ ....++++|++..|+... ......+.+++.+... ..++.++..
T Consensus 163 v~~~~~-------------~~~~~~~~~-~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g---- 222 (357)
T PRK00726 163 VREEIL-------------ALAAPPARL-AGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG---- 222 (357)
T ss_pred CChHhh-------------cccchhhhc-cCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC----
Confidence 110000 000000011 112345667666565331 1222333366655433 344555432
Q ss_pred CCCCCCCchhHHHH--hcCCceEEeccC-hHhhhcccCcceeeeccChhhHHHHHHhCCccccccc----cchhhhHHHH
Q 037374 314 KDGESQIPEEVVEA--TKERGYIAGWVP-QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS----FADQQINSRF 386 (463)
Q Consensus 314 ~~~~~~~~~~~~~~--~~~nv~~~~~vp-q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r 386 (463)
.. +...+. ..-++.+.+|+. ..++|+.+++ +|+|+|.+++.||+++|+|+|++|. ..||..|+..
T Consensus 223 --~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 223 --DL----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred --cH----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 11 222111 222477889994 5789999999 9999999999999999999999997 3689999999
Q ss_pred HHHhhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 037374 387 VDEVWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESADQMANLA 432 (463)
Q Consensus 387 v~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~ 432 (463)
+.+ .|.|..+. ++++++.|.++|.++++| ++.+++..+-+.+.
T Consensus 295 i~~-~~~g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~ 338 (357)
T PRK00726 295 LVD-AGAALLIPQSDLTPEKLAEKLLELLSD--PERLEAMAEAARAL 338 (357)
T ss_pred HHH-CCCEEEEEcccCCHHHHHHHHHHHHcC--HHHHHHHHHHHHhc
Confidence 965 79999998 678899999999999998 77776655555444
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=4.6e-17 Score=158.03 Aligned_cols=313 Identities=17% Similarity=0.146 Sum_probs=177.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHH
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFT 87 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~ 87 (463)
+|++.+.++.||....+.|++.|.++||+|++++...... ... ....+++++.++-.-.. .....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~-----~~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARL---------VPKAGIPLHTIPVGGLR-----RKGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhc---------ccccCCceEEEEecCcC-----CCChH
Confidence 5888999999999999999999999999999998743211 100 00113555555421101 11111
Q ss_pred HHHHHHH--hhChHHHHHHHHcCCCCceEEEEcCcc--chHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCCC
Q 037374 88 ELIDSLN--LAIPPLLKEMVTDSNSPVNYIIADGYM--SHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPI 163 (463)
Q Consensus 88 ~~~~~~~--~~~~~~l~~~l~~~~~~pDlIi~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 163 (463)
..+..+. ......+..++++. +||+|++.... ..+..+|...++|++....... +
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~-~------------------ 124 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV-P------------------ 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC-c------------------
Confidence 1111111 11233456667776 99999986533 3567788999999986321100 0
Q ss_pred CCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccC---C--ceecccccc
Q 037374 164 KGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEG---P--IFIGPLNAH 238 (463)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~---~--~~vGpl~~~ 238 (463)
+..+ +.. ...++.+++.+....+. . ..+|.-...
T Consensus 125 --------------~~~~-------------------------~~~--~~~~~~vi~~s~~~~~~~~~~~~~~i~n~v~~ 163 (350)
T cd03785 125 --------------GLAN-------------------------RLL--ARFADRVALSFPETAKYFPKDKAVVTGNPVRE 163 (350)
T ss_pred --------------cHHH-------------------------HHH--HHhhCEEEEcchhhhhcCCCCcEEEECCCCch
Confidence 0000 000 01122222222221110 0 003321110
Q ss_pred ccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCH-HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCC
Q 037374 239 LKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSR-DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGE 317 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 317 (463)
.. ....+. .+.+....++++|++..|+...... +.+..++..+...+..+++.++.. .
T Consensus 164 ~~-------------~~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g------~- 222 (350)
T cd03785 164 EI-------------LALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG------D- 222 (350)
T ss_pred HH-------------hhhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc------c-
Confidence 00 000000 1122213355667666666542211 122233334432334455565431 1
Q ss_pred CCCchhHHHH---hcCCceEEecc-ChHhhhcccCcceeeeccChhhHHHHHHhCCccccccc----cchhhhHHHHHHH
Q 037374 318 SQIPEEVVEA---TKERGYIAGWV-PQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS----FADQQINSRFVDE 389 (463)
Q Consensus 318 ~~~~~~~~~~---~~~nv~~~~~v-pq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~ 389 (463)
.+.+.+. ..+|+.+.+|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+
T Consensus 223 ---~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~ 297 (350)
T cd03785 223 ---LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK 297 (350)
T ss_pred ---HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh
Confidence 1222221 23689999998 45779999999 9999999999999999999999986 3678999999965
Q ss_pred hhhcceecc-CccCHHHHHHHHHHHHhHhHHHHHHHHH
Q 037374 390 VWKLGLDIK-DLFDRNIVEKAVNDLMVKRKEEFMESAD 426 (463)
Q Consensus 390 ~~G~g~~l~-~~~~~~~l~~~i~~vl~~~~~~~~~~a~ 426 (463)
.|.|..++ .+.+.++|.++|.++++| ++.+++..
T Consensus 298 -~g~g~~v~~~~~~~~~l~~~i~~ll~~--~~~~~~~~ 332 (350)
T cd03785 298 -AGAAVLIPQEELTPERLAAALLELLSD--PERLKAMA 332 (350)
T ss_pred -CCCEEEEecCCCCHHHHHHHHHHHhcC--HHHHHHHH
Confidence 69999987 457999999999999987 65554333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=1.3e-15 Score=147.67 Aligned_cols=88 Identities=25% Similarity=0.337 Sum_probs=72.6
Q ss_pred ChHhhhcccCcceeeeccChhhHHHHHHhCCcccccccc---chhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHH
Q 037374 339 PQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF---ADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLM 414 (463)
Q Consensus 339 pq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl 414 (463)
+..++|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++ ++.+.+.|.++|.+++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~~~~~~l~~~i~~ll 319 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKELLPEKLLEALLKLL 319 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEecccCCHHHHHHHHHHHH
Confidence 56779999999 99999988999999999999998863 468889999965 79999887 6678999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 037374 415 VKRKEEFMESADQMANLAKK 434 (463)
Q Consensus 415 ~~~~~~~~~~a~~l~~~~~~ 434 (463)
+| ++.+++ +++..++
T Consensus 320 ~~--~~~~~~---~~~~~~~ 334 (348)
T TIGR01133 320 LD--PANLEA---MAEAARK 334 (348)
T ss_pred cC--HHHHHH---HHHHHHh
Confidence 97 666543 4444444
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=3.2e-16 Score=152.85 Aligned_cols=171 Identities=9% Similarity=-0.029 Sum_probs=110.4
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEecc-ChH
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS-----KNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWV-PQE 341 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v-pq~ 341 (463)
.++++|.+.-||....-......+++++..+ +.++++...... +. ...+.+.+....+..+.-+. +..
T Consensus 189 ~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~----~~--~~~~~~~~~~~~~~~v~~~~~~~~ 262 (385)
T TIGR00215 189 HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK----RR--LQFEQIKAEYGPDLQLHLIDGDAR 262 (385)
T ss_pred CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch----hH--HHHHHHHHHhCCCCcEEEECchHH
Confidence 4567888877877643233455566555442 234545442210 00 00111111121233332222 345
Q ss_pred hhhcccCcceeeeccChhhHHHHHHhCCccccc----cccc---------hhhhHHHHHHHhhhcceecc-CccCHHHHH
Q 037374 342 EVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW----PSFA---------DQQINSRFVDEVWKLGLDIK-DLFDRNIVE 407 (463)
Q Consensus 342 ~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~----P~~~---------DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~ 407 (463)
.++..+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+.+ .++...+. ++.|++.|.
T Consensus 263 ~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~-~~~~pel~q~~~~~~~l~ 338 (385)
T TIGR00215 263 KAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILAN-RLLVPELLQEECTPHPLA 338 (385)
T ss_pred HHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcC-CccchhhcCCCCCHHHHH
Confidence 69999999 9999999988 999999999999 8642 27889999975 59999988 889999999
Q ss_pred HHHHHHHhHhHH----HHHHHHHHHHHHHHHhhhcCCchHHHHHHHH
Q 037374 408 KAVNDLMVKRKE----EFMESADQMANLAKKSVNEGGSLYCNLDRLV 450 (463)
Q Consensus 408 ~~i~~vl~~~~~----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i 450 (463)
+.+.++|+| + +++++..+--+++++...++|.+.++++.+.
T Consensus 339 ~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 339 IALLLLLEN--GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred HHHHHHhcC--CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 999999998 6 6666555555555555555666666665544
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.73 E-value=1e-15 Score=138.48 Aligned_cols=325 Identities=16% Similarity=0.155 Sum_probs=192.1
Q ss_pred CCCCCEEEEecCC--CCCCHHHHHHHHHHHHhC--CCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCC
Q 037374 3 KQDPAHVVIFPLP--GVGHVNSMLKLAELLSHA--GIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKD 78 (463)
Q Consensus 3 ~~~~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~ 78 (463)
.++++||+|++.- +.||+..++.||++|++. |.+|++++..+....+.- ..+++|+.+|.-....
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~-----------~~gVd~V~LPsl~k~~ 74 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG-----------PAGVDFVKLPSLIKGD 74 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC-----------cccCceEecCceEecC
Confidence 3457799999977 556999999999999998 999999998654332222 2358999998533221
Q ss_pred --CCCCCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhh
Q 037374 79 --HPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNII 156 (463)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 156 (463)
.... .+...-...+.......+...++.+ +||++|+|.+-.+. .-+.+ | +. .++-
T Consensus 75 ~G~~~~-~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Gl--r~EL~--p------tL-------~yl~--- 131 (400)
T COG4671 75 NGEYGL-VDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGL--RFELL--P------TL-------EYLK--- 131 (400)
T ss_pred CCceee-eecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccch--hhhhh--H------HH-------HHHh---
Confidence 1111 1111113333333344556666776 99999999655431 11110 0 00 0000
Q ss_pred hcCCCCCCCCCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEEecCcccccCCce-----
Q 037374 157 IAGELPIKGTEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLILNTFEDLEGPIF----- 231 (463)
Q Consensus 157 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~----- 231 (463)
...+ +. ..++.. .++.+.... .++..+...+... +..+.+++-..+.+-.+.-
T Consensus 132 ------~~~t-----~~--vL~lr~---i~D~p~~~~----~~w~~~~~~~~I~--r~yD~V~v~GdP~f~d~~~~~~~~ 189 (400)
T COG4671 132 ------TTGT-----RL--VLGLRS---IRDIPQELE----ADWRRAETVRLIN--RFYDLVLVYGDPDFYDPLTEFPFA 189 (400)
T ss_pred ------hcCC-----cc--eeehHh---hhhchhhhc----cchhhhHHHHHHH--HhheEEEEecCccccChhhcCCcc
Confidence 0000 00 000000 111111111 1111111222222 3345566666555432221
Q ss_pred ---------eccccccccccCCCCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhC-CCc
Q 037374 232 ---------IGPLNAHLKVRIPEKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS-KNG 301 (463)
Q Consensus 232 ---------vGpl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~-~~~ 301 (463)
+|.+ -.+-+. .+ . + |.+ ..++..|+||-|-.. ...+++...++|-... +.+
T Consensus 190 ~~i~~k~~ytG~v-q~~~~~-~~-------~-p-------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~ 250 (400)
T COG4671 190 PAIRAKMRYTGFV-QRSLPH-LP-------L-P-------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLN 250 (400)
T ss_pred HhhhhheeEeEEe-eccCcC-CC-------C-C-------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCC
Confidence 6666 111100 00 0 0 111 245566889988554 4567777777776652 333
Q ss_pred --EEEEEcCCCCCCCCCCCCCchhHHH----Hhc--CCceEEeccCh-HhhhcccCcceeeeccChhhHHHHHHhCCccc
Q 037374 302 --FLWVIRPDLISGKDGESQIPEEVVE----ATK--ERGYIAGWVPQ-EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMI 372 (463)
Q Consensus 302 --~i~~~~~~~~~~~~~~~~~~~~~~~----~~~--~nv~~~~~vpq-~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v 372 (463)
.++.++. ..|....+ ..+ +++.|..|-.+ ..++..++. +|+-||.||++|-|.+|+|.+
T Consensus 251 ~~~~ivtGP----------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aL 318 (400)
T COG4671 251 HKWLIVTGP----------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPAL 318 (400)
T ss_pred cceEEEeCC----------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceE
Confidence 4444432 23333222 234 68999999876 559999999 999999999999999999999
Q ss_pred ccccc---chhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHh
Q 037374 373 CWPSF---ADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 373 ~~P~~---~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~ 415 (463)
++|.. -+|-.-|.|+. ++|+.-.+. +++++..|+++|...++
T Consensus 319 ivPr~~p~eEQliRA~Rl~-~LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 319 IVPRAAPREEQLIRAQRLE-ELGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred EeccCCCcHHHHHHHHHHH-hcCcceeeCcccCChHHHHHHHHhccc
Confidence 99985 48999999994 699999998 89999999999999988
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.67 E-value=3.6e-15 Score=146.28 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=98.4
Q ss_pred CCeEEEEeccCcccCCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchhHH---HHhcCCceEEeccCh-Hhh
Q 037374 269 KQSVIYVSFGSVAVMSRDQLIVFYYGLVNS-KNGFLWVIRPDLISGKDGESQIPEEVV---EATKERGYIAGWVPQ-EEV 343 (463)
Q Consensus 269 ~~~~v~vslGs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~vpq-~~i 343 (463)
++++|++..|+.... +.+..+++++.+. +.++++..+.+. .+-+.+. +..++|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 456787777876532 2345666676554 456666654210 1111221 123458999999987 469
Q ss_pred hcccCcceeeeccChhhHHHHHHhCCccccc-cccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHHHH
Q 037374 344 LAHKAVGGFLIHCGWNSTLESIMAGMPMICW-PSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEEFM 422 (463)
Q Consensus 344 L~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~ 422 (463)
+..+++ +|+.+|..|+.||+++|+|+|+. |....|..|+..+. +.|+|... .+.++|.++|.++++| ++.+
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~-~~G~~~~~---~~~~~l~~~i~~ll~~--~~~~ 342 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE-RKGAAVVI---RDDEEVFAKTEALLQD--DMKL 342 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH-hCCcEEEE---CCHHHHHHHHHHHHCC--HHHH
Confidence 999999 99999988999999999999985 66677788998885 46888755 3679999999999987 6655
Q ss_pred HHH
Q 037374 423 ESA 425 (463)
Q Consensus 423 ~~a 425 (463)
++.
T Consensus 343 ~~m 345 (380)
T PRK13609 343 LQM 345 (380)
T ss_pred HHH
Confidence 443
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=3.2e-14 Score=132.43 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=76.8
Q ss_pred CeEEEEeccCcccCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchhHHHH--hcCCceEEeccChH-hhh
Q 037374 270 QSVIYVSFGSVAVMSRDQLIVFYYGLVNS--KNGFLWVIRPDLISGKDGESQIPEEVVEA--TKERGYIAGWVPQE-EVL 344 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~iL 344 (463)
.+.|+|++|.... ......+++++.+. +.++.++++.. . ...+.+.+. ...|+.+..|+++. +++
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~------~--~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSS------N--PNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCC------C--cCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3568999995543 23455666777654 45677777532 1 112222221 24589999999975 699
Q ss_pred cccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHH
Q 037374 345 AHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRF 386 (463)
Q Consensus 345 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 386 (463)
+.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=1.2e-13 Score=135.56 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=67.8
Q ss_pred hHhhhcccCcceeeeccChhhHHHHHHhCCcccccccc------c--hhhhH-----HHHHHHhhhcceecc-CccCHHH
Q 037374 340 QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSF------A--DQQIN-----SRFVDEVWKLGLDIK-DLFDRNI 405 (463)
Q Consensus 340 q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~------~--DQ~~n-----a~rv~~~~G~g~~l~-~~~~~~~ 405 (463)
-..+++.+++ +|+.+|.+++ |++++|+|+|++|.. . .|..| +..+.+ .+++..+. ...+++.
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 330 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEEATPEK 330 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCCCCHHH
Confidence 4668999999 9999999888 999999999998532 1 23222 233322 24444444 6789999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHH
Q 037374 406 VEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVK 451 (463)
Q Consensus 406 l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~ 451 (463)
|.++|.++++| ++.+++..+-.+.+++.. ..|...+.++.+.+
T Consensus 331 l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 331 LARALLPLLAD--GARRQALLEGFTELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred HHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 99999999998 766654444443333332 23443444444433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.56 E-value=1.4e-13 Score=135.14 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=107.1
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhh-C-CCcEEEEEcCCCCCCCCCCCCCchhHHHH--hcCCceEEeccCh-Hh
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVN-S-KNGFLWVIRPDLISGKDGESQIPEEVVEA--TKERGYIAGWVPQ-EE 342 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~-~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq-~~ 342 (463)
+++++|+++.|+... .+.+..+++++.+ . +.++++..+.+. .+-+.+.+. ..+++.+.+|+++ .+
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 356788888888762 2344555555432 2 345655554220 111222221 2357888899976 46
Q ss_pred hhcccCcceeeeccChhhHHHHHHhCCccccc-cccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHHH
Q 037374 343 VLAHKAVGGFLIHCGWNSTLESIMAGMPMICW-PSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEEF 421 (463)
Q Consensus 343 iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~ 421 (463)
+++.+|+ +|+.+|..|+.||+++|+|+|++ |...+|..|+..+.+ .|+|.... +.+++.++|.++++| ++.
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~---~~~~l~~~i~~ll~~--~~~ 341 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD---TPEEAIKIVASLTNG--NEQ 341 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC---CHHHHHHHHHHHhcC--HHH
Confidence 9999999 99998889999999999999998 666667789999954 79998763 788999999999986 543
Q ss_pred HHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 422 MESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 422 ~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
+ +++++..++..+ .-+..+.++.+++.+
T Consensus 342 ~---~~m~~~~~~~~~-~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 342 L---TNMISTMEQDKI-KYATQTICRDLLDLI 369 (391)
T ss_pred H---HHHHHHHHHhcC-CCCHHHHHHHHHHHh
Confidence 3 344444444322 223234444444433
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=5.1e-16 Score=133.65 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=94.4
Q ss_pred EEEEeccCcccCCH-HHHHHHHHHHhh--CCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccC-hHhhhccc
Q 037374 272 VIYVSFGSVAVMSR-DQLIVFYYGLVN--SKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVP-QEEVLAHK 347 (463)
Q Consensus 272 ~v~vslGs~~~~~~-~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q~~iL~~~ 347 (463)
+|+|+.||.....- +.+..++..+.. ...++++..+..... .....+ +....|+.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~------~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYE------ELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECH------HHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHH------HHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 48999998874211 112223333332 246788888643111 000000 00125899999999 78899999
Q ss_pred CcceeeeccChhhHHHHHHhCCccccccccc----hhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHHHhH
Q 037374 348 AVGGFLIHCGWNSTLESIMAGMPMICWPSFA----DQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 348 ~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~vl~~ 416 (463)
++ +|||||.||++|++++|+|+|++|... +|..||..+++ .|.|..+. ...+.+.|.++|.+++++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 99999999965 79999998 778899999999999986
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=2.4e-13 Score=113.30 Aligned_cols=121 Identities=19% Similarity=0.155 Sum_probs=80.7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHH
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTE 88 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~ 88 (463)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+.+ .| ++|..++.. .... .......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-~G-----------l~~~~~~~~-~~~~--~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-AG-----------LEFVPIPGD-SRLP--RSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-TT------------EEEESSSC-GGGG--HHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc-cC-----------ceEEEecCC-cCcC--cccchhh
Confidence 7899999999999999999999999999999999887777744 56 999988754 0000 0000111
Q ss_pred HHHHHH------hhChHHHHHHHHcC------CCCceEEEEcCccchHHHHHHHhCCceEEEecchhH
Q 037374 89 LIDSLN------LAIPPLLKEMVTDS------NSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 89 ~~~~~~------~~~~~~l~~~l~~~------~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
.+.... ......+.+...+. ...+|+++.+.....+..+|+.+|||++.....+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 111111 11222233332222 236888888988889999999999999998776654
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.38 E-value=1.9e-10 Score=112.43 Aligned_cols=141 Identities=18% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCeEEEEeccCcccCCHHHHHHHHHHHhhC----CCcEEEEEcCCCCCCCCCCCCCchhHHHHh----------------
Q 037374 269 KQSVIYVSFGSVAVMSRDQLIVFYYGLVNS----KNGFLWVIRPDLISGKDGESQIPEEVVEAT---------------- 328 (463)
Q Consensus 269 ~~~~v~vslGs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 328 (463)
++++|.+--||-.......+..++++++.+ +..+++.+.++. ..+.+.+..
T Consensus 204 ~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~~~~~~l~~~g~~~~~~~~~~~~ 274 (396)
T TIGR03492 204 GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLEKLQAILEDLGWQLEGSSEDQTS 274 (396)
T ss_pred CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHHHHHHHHHhcCceecCCccccch
Confidence 456788888887644444455666666654 456777773321 011111111
Q ss_pred ---cCCceEEeccC-hHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhh----hcceeccCc
Q 037374 329 ---KERGYIAGWVP-QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVW----KLGLDIKDL 400 (463)
Q Consensus 329 ---~~nv~~~~~vp-q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~----G~g~~l~~~ 400 (463)
.+++.+..+.. ..++++.+++ +|+-+|..| .|+...|+|+|++|.-..|. ||... ++. |.+..+. +
T Consensus 275 ~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~-~ 348 (396)
T TIGR03492 275 LFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA-S 348 (396)
T ss_pred hhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC-C
Confidence 12355655554 4669999999 999999776 99999999999999877787 88766 332 6666663 4
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESAD 426 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a~ 426 (463)
.+.+.|.+++.++++| ++..++..
T Consensus 349 ~~~~~l~~~l~~ll~d--~~~~~~~~ 372 (396)
T TIGR03492 349 KNPEQAAQVVRQLLAD--PELLERCR 372 (396)
T ss_pred CCHHHHHHHHHHHHcC--HHHHHHHH
Confidence 5569999999999997 66554443
No 44
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=3e-10 Score=100.33 Aligned_cols=146 Identities=8% Similarity=0.063 Sum_probs=107.5
Q ss_pred CCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHH--hcCCceEEeccC-hHhhhc
Q 037374 269 KQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEA--TKERGYIAGWVP-QEEVLA 345 (463)
Q Consensus 269 ~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vp-q~~iL~ 345 (463)
++.-|+|++| .+.+....-+++..+.+.++.+-+++++ .+ .......++ ..+|+.+..... ...++.
T Consensus 157 ~~r~ilI~lG--GsDpk~lt~kvl~~L~~~~~nl~iV~gs------~~--p~l~~l~k~~~~~~~i~~~~~~~dma~LMk 226 (318)
T COG3980 157 PKRDILITLG--GSDPKNLTLKVLAELEQKNVNLHIVVGS------SN--PTLKNLRKRAEKYPNINLYIDTNDMAELMK 226 (318)
T ss_pred chheEEEEcc--CCChhhhHHHHHHHhhccCeeEEEEecC------CC--cchhHHHHHHhhCCCeeeEecchhHHHHHH
Confidence 3445899999 3334456778888998888777777752 11 222333332 245777776665 566999
Q ss_pred ccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHHHHHHH
Q 037374 346 HKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEEFMESA 425 (463)
Q Consensus 346 ~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~~~a 425 (463)
.|++ .|+-||+ |+.|++.-|+|.+++|+...|.--|... +.+|+-..+.-.++.+.+...+.++.+| ...+++.
T Consensus 227 e~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~l~~~~~~~~~~~i~~d--~~~rk~l 300 (318)
T COG3980 227 EADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYHLKDLAKDYEILQIQKD--YARRKNL 300 (318)
T ss_pred hcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCCCchHHHHHHHHHhhhC--HHHhhhh
Confidence 9999 9999887 8999999999999999999999999999 4578888876347778888888888887 6666655
Q ss_pred HHHHH
Q 037374 426 DQMAN 430 (463)
Q Consensus 426 ~~l~~ 430 (463)
-..++
T Consensus 301 ~~~~~ 305 (318)
T COG3980 301 SFGSK 305 (318)
T ss_pred hhccc
Confidence 44443
No 45
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.34 E-value=2.6e-10 Score=111.86 Aligned_cols=96 Identities=18% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCceEEeccCh-HhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhh-hHHHHHHHhhhcceeccCccCHHHHH
Q 037374 330 ERGYIAGWVPQ-EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQ-INSRFVDEVWKLGLDIKDLFDRNIVE 407 (463)
Q Consensus 330 ~nv~~~~~vpq-~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~g~~l~~~~~~~~l~ 407 (463)
.++++.+|+++ .+++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|... -+++.|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec---CCHHHHH
Confidence 46888899986 559999999 999999999999999999999998766675 68988865 6999765 4889999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHh
Q 037374 408 KAVNDLMVKRKEEFMESADQMANLAKKS 435 (463)
Q Consensus 408 ~~i~~vl~~~~~~~~~~a~~l~~~~~~~ 435 (463)
++|.++++|+ + +..+++++..++.
T Consensus 339 ~~i~~ll~~~-~---~~~~~m~~~~~~~ 362 (382)
T PLN02605 339 RIVAEWFGDK-S---DELEAMSENALKL 362 (382)
T ss_pred HHHHHHHcCC-H---HHHHHHHHHHHHh
Confidence 9999999751 2 3344555555554
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=3.3e-09 Score=102.95 Aligned_cols=111 Identities=20% Similarity=0.188 Sum_probs=77.1
Q ss_pred hcCCceEEeccChHh---hhcccCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 328 TKERGYIAGWVPQEE---VLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 328 ~~~nv~~~~~vpq~~---iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
..+|+.+.+|+++.+ ++..+++ +|..+. .+++.||+++|+|+|+.+.. .+...+. ..+.|... ..
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~-~~~~g~~~-~~ 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVT-DGENGLLV-EP 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhhc-CCcceEEc-CC
Confidence 457899999998655 8999998 887654 47899999999999987754 3555563 35788777 45
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 452 (463)
.+.+++.++|.++++| ++.+++..+-+....+ .-+..+.++++++.
T Consensus 317 ~~~~~l~~~i~~l~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 GDAEAFAAALAALLAD--PELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred CCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 6788899999999997 6655544443333322 22334444555543
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.20 E-value=3.6e-08 Score=99.37 Aligned_cols=130 Identities=16% Similarity=0.147 Sum_probs=81.6
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHh---hhcc
Q 037374 272 VIYVSFGSVAVMSRDQLIVFYYGLVNSK-NGFLWVIRPDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEE---VLAH 346 (463)
Q Consensus 272 ~v~vslGs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~---iL~~ 346 (463)
.+++..|+.. ..+.+..++++++..+ .+++++-. |. ..+.+.+.. ..|+.+.+++|+.+ +|..
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~-------G~---~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~ 331 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGD-------GP---YREELEKMFAGTPTVFTGMLQGDELSQAYAS 331 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeC-------Ch---HHHHHHHHhccCCeEEeccCCHHHHHHHHHH
Confidence 3445667765 3345666777777654 45444332 11 112222211 24788889998544 8889
Q ss_pred cCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHh---hhcceeccCccCHHHHHHHHHHHHhHhHH
Q 037374 347 KAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEV---WKLGLDIKDLFDRNIVEKAVNDLMVKRKE 419 (463)
Q Consensus 347 ~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~---~G~g~~l~~~~~~~~l~~~i~~vl~~~~~ 419 (463)
+++ +|.-.. ..++.||+++|+|+|+.... .....+ +. -+.|...+ .-+.+++.++|.++++| +
T Consensus 332 aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~-~~d~~~la~~i~~ll~~--~ 401 (465)
T PLN02871 332 GDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYT-PGDVDDCVEKLETLLAD--P 401 (465)
T ss_pred CCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeC-CCCHHHHHHHHHHHHhC--H
Confidence 998 885432 45789999999999986542 233333 32 36676663 45789999999999986 5
Q ss_pred HHHH
Q 037374 420 EFME 423 (463)
Q Consensus 420 ~~~~ 423 (463)
+.++
T Consensus 402 ~~~~ 405 (465)
T PLN02871 402 ELRE 405 (465)
T ss_pred HHHH
Confidence 5443
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.19 E-value=1.5e-08 Score=98.08 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=63.2
Q ss_pred cCCceEEeccChHh---hhcccCcceeee-----ccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLI-----HCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~-----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
.+++.+.+++++.+ ++..+++ +|. -|...++.||+++|+|+|+.+. ..+...+ +..+.|... ..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~-~~ 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLF-PP 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEE-CC
Confidence 46899999997544 6889998 773 2334489999999999998654 3456666 333467766 44
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESA 425 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a 425 (463)
-+.+++.++|.++++| ++.+++.
T Consensus 314 ~d~~~l~~~i~~l~~~--~~~~~~~ 336 (359)
T cd03823 314 GDAEDLAAALERLIDD--PDLLERL 336 (359)
T ss_pred CCHHHHHHHHHHHHhC--hHHHHHH
Confidence 5689999999999986 5544443
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.10 E-value=9e-08 Score=92.22 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=62.2
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+++.+.++..+ ..++..+++ +|.-+. .+++.||+++|+|+|+.+.. .+...+. ..+.|... ..-+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~-~~~~g~~~-~~~~~ 316 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVI-DGVNGFLV-PPGDA 316 (359)
T ss_pred cceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhh-cCcceEEE-CCCCH
Confidence 357888887654 559999998 775443 67999999999999986543 3445553 34667666 44578
Q ss_pred HHHHHHHHHHHhHhHHHHHHHH
Q 037374 404 NIVEKAVNDLMVKRKEEFMESA 425 (463)
Q Consensus 404 ~~l~~~i~~vl~~~~~~~~~~a 425 (463)
+++.++|.+++.| ++..++.
T Consensus 317 ~~~~~~i~~l~~~--~~~~~~~ 336 (359)
T cd03808 317 EALADAIERLIED--PELRARM 336 (359)
T ss_pred HHHHHHHHHHHhC--HHHHHHH
Confidence 9999999999886 5544433
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.10 E-value=4e-08 Score=95.94 Aligned_cols=138 Identities=21% Similarity=0.193 Sum_probs=82.3
Q ss_pred CCeEEEEeccCccc-CCHHHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchhHH----HHhcCCceEEeccChHh
Q 037374 269 KQSVIYVSFGSVAV-MSRDQLIVFYYGLVNS-KNGFLWVIRPDLISGKDGESQIPEEVV----EATKERGYIAGWVPQEE 342 (463)
Q Consensus 269 ~~~~v~vslGs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~nv~~~~~vpq~~ 342 (463)
.++.+++..|+... ...+.+...+..+.+. +.++++ ++. +. ..+.+. ....+|+.+.+++|+.+
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~------~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~ 287 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGD------GP---EKEELKELAKALGLDNVTFLGRVPKEE 287 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCC------cc---cHHHHHHHHHHcCCCcEEEeCCCChHH
Confidence 44566677787653 2333344444444333 344433 322 11 111221 12346899999998654
Q ss_pred ---hhcccCcceeeeccC---------hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHH
Q 037374 343 ---VLAHKAVGGFLIHCG---------WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAV 410 (463)
Q Consensus 343 ---iL~~~~~~~~I~HgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i 410 (463)
++..+++ +|.... .+++.||+++|+|+|+.+....+. .+.+ .+.|...+ .-+.+++.++|
T Consensus 288 ~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~~~~-~~~~~~l~~~i 359 (394)
T cd03794 288 LPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGLVVP-PGDPEALAAAI 359 (394)
T ss_pred HHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcceEeC-CCCHHHHHHHH
Confidence 7888998 664322 334799999999999987654332 3322 35666663 34889999999
Q ss_pred HHHHhHhHHHHHHHHH
Q 037374 411 NDLMVKRKEEFMESAD 426 (463)
Q Consensus 411 ~~vl~~~~~~~~~~a~ 426 (463)
.++++| ++.+++..
T Consensus 360 ~~~~~~--~~~~~~~~ 373 (394)
T cd03794 360 LELLDD--PEERAEMG 373 (394)
T ss_pred HHHHhC--hHHHHHHH
Confidence 999976 55544433
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=3e-07 Score=91.30 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCceEEeccChHh---hhcccCcceeeeccCh------hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 330 ERGYIAGWVPQEE---VLAHKAVGGFLIHCGW------NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 330 ~nv~~~~~vpq~~---iL~~~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
+|+.+.+|+|+.+ ++..+++-.+.+..+. +.+.|++++|+|+|+...... .....+ + +.|... ..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~-~~ 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCV-EP 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEe-CC
Confidence 4788899998644 7888998444444332 246899999999999764321 112233 3 667766 34
Q ss_pred cCHHHHHHHHHHHHhH
Q 037374 401 FDRNIVEKAVNDLMVK 416 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~ 416 (463)
-+.++++++|.++++|
T Consensus 358 ~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 358 ESVEALVAAIAALARQ 373 (412)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 5789999999999986
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.03 E-value=2.5e-07 Score=90.37 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=60.8
Q ss_pred cCCceEEeccCh-HhhhcccCcceeee----ccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLI----HCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+++.+.++.++ ..++..+++ +|. -|...++.||+++|+|+|+.. ....+..+. +-..|... ..-+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~-~~~~G~~~-~~~~~ 323 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVK-HGETGFLV-DVGDV 323 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhc-CCCceEEc-CCCCH
Confidence 457888888875 558999998 773 244569999999999999854 344556663 33466555 34578
Q ss_pred HHHHHHHHHHHhHhHHHHH
Q 037374 404 NIVEKAVNDLMVKRKEEFM 422 (463)
Q Consensus 404 ~~l~~~i~~vl~~~~~~~~ 422 (463)
+++.++|.++++| ++.+
T Consensus 324 ~~l~~~i~~l~~~--~~~~ 340 (371)
T cd04962 324 EAMAEYALSLLED--DELW 340 (371)
T ss_pred HHHHHHHHHHHhC--HHHH
Confidence 9999999999986 5443
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.03 E-value=9e-07 Score=87.41 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=60.4
Q ss_pred CCceEEeccChHh---hhcccCcceeee---ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccC
Q 037374 330 ERGYIAGWVPQEE---VLAHKAVGGFLI---HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 330 ~nv~~~~~vpq~~---iL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
++|.+.+++|+.+ +|..+++ +|. +.| ..++.||+++|+|+|+. |.......+. .-..|... ..-+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~-~~~~G~lv-~~~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVIT-DGENGLLV-DFFD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhcc-cCCceEEc-CCCC
Confidence 5788999999755 6778888 653 223 34899999999999986 3345556663 32456655 4457
Q ss_pred HHHHHHHHHHHHhHhHHHHHH
Q 037374 403 RNIVEKAVNDLMVKRKEEFME 423 (463)
Q Consensus 403 ~~~l~~~i~~vl~~~~~~~~~ 423 (463)
.++++++|.++++| ++.++
T Consensus 353 ~~~la~~i~~ll~~--~~~~~ 371 (396)
T cd03818 353 PDALAAAVIELLDD--PARRA 371 (396)
T ss_pred HHHHHHHHHHHHhC--HHHHH
Confidence 99999999999997 54433
No 54
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.02 E-value=2.2e-07 Score=87.75 Aligned_cols=301 Identities=15% Similarity=0.079 Sum_probs=161.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch-hhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY-DRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
|||.+-- ...-|+.=+-.+.++|.++||+|.+.+-+... ..+.+..+ +++..+...- .+
T Consensus 1 MkIwiDi-~~p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg-----------~~y~~iG~~g--------~~ 60 (335)
T PF04007_consen 1 MKIWIDI-THPAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG-----------IDYIVIGKHG--------DS 60 (335)
T ss_pred CeEEEEC-CCchHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC-----------CCeEEEcCCC--------CC
Confidence 5665543 34449999999999999999999999875433 35555444 7777766421 12
Q ss_pred HHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchhHHHHHHhhhhhhhhcCCCCCCC
Q 037374 86 FTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSACAFWSFHCIPNIIIAGELPIKG 165 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 165 (463)
....+..... ....+-.+++.. +||++|+- ..+.+..+|..+|+|+|.+.-+....... ....|+..
T Consensus 61 ~~~Kl~~~~~-R~~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------~Lt~Pla~ 127 (335)
T PF04007_consen 61 LYGKLLESIE-RQYKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN---------RLTLPLAD 127 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc---------eeehhcCC
Confidence 2222222222 233445555655 99999975 45678889999999999986543321100 00011110
Q ss_pred CCcccccccccCCCCCCcCCCCCCCccccCCcccHHHHHHHHHHhhhhccceEE-ecCcccccCCceeccccccccccCC
Q 037374 166 TEDMDRLITNVTGMEGFLRCRDLPSFCRVNNPMDLQLLLFARETRLSVRAGGLI-LNTFEDLEGPIFIGPLNAHLKVRIP 244 (463)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~vGpl~~~~~~~~~ 244 (463)
. +. .|..+. . ..+.++. .+ ..+. .+.+.++-+ +-|
T Consensus 128 ~----------------i~---~P~~~~-----~---~~~~~~G---~~-~~i~~y~G~~E~ay---l~~---------- 163 (335)
T PF04007_consen 128 V----------------II---TPEAIP-----K---EFLKRFG---AK-NQIRTYNGYKELAY---LHP---------- 163 (335)
T ss_pred e----------------eE---CCcccC-----H---HHHHhcC---Cc-CCEEEECCeeeEEe---ecC----------
Confidence 0 00 000000 0 0000000 00 0111 233332221 111
Q ss_pred CCCCCCCCCcccchhhhHhhhcCCCCeEEEEeccCccc----CCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCC
Q 037374 245 EKTHSSSGLWKVDRSCIAWLDKQPKQSVIYVSFGSVAV----MSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQI 320 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vslGs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~ 320 (463)
+..|+++.+-+. -.+++.|++-+-+... .....+..+++.+++.+..+ +.++.. ++ .
T Consensus 164 ---------F~Pd~~vl~~lg-~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~v-V~ipr~-----~~---~ 224 (335)
T PF04007_consen 164 ---------FKPDPEVLKELG-LDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNV-VIIPRY-----ED---Q 224 (335)
T ss_pred ---------CCCChhHHHHcC-CCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceE-EEecCC-----cc---h
Confidence 122333333333 2356778777766432 23345677888898887764 444321 11 1
Q ss_pred chhHHHHhcCCceEE-eccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccC
Q 037374 321 PEEVVEATKERGYIA-GWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKD 399 (463)
Q Consensus 321 ~~~~~~~~~~nv~~~-~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 399 (463)
.+.+. .-++.+. .-++-.++|.++++ +|+=|| +...||...|+|.|-+ +..+-...-+.+.+ .|+ .. .
T Consensus 225 ~~~~~---~~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl--l~-~ 293 (335)
T PF04007_consen 225 RELFE---KYGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGL--LY-H 293 (335)
T ss_pred hhHHh---ccCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC--eE-e
Confidence 11111 1134444 55666689999999 999877 7889999999999974 11222222344545 465 22 4
Q ss_pred ccCHHHHHHHHHHHH
Q 037374 400 LFDRNIVEKAVNDLM 414 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl 414 (463)
..+.+++.+.|.+.+
T Consensus 294 ~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 294 STDPDEIVEYVRKNL 308 (335)
T ss_pred cCCHHHHHHHHHHhh
Confidence 457777776554443
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.00 E-value=6.4e-07 Score=86.45 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=65.2
Q ss_pred hcCCceEEeccCh---HhhhcccCcceeee----ccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 328 TKERGYIAGWVPQ---EEVLAHKAVGGFLI----HCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 328 ~~~nv~~~~~vpq---~~iL~~~~~~~~I~----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
.++++.+.+++++ ..+|..+++ +|. -|..+++.||+++|+|+|+.+. ...+..+. ..+.|... ..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~-~~~~g~~~-~~ 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVE-DGETGLLV-PP 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhc-CCcceEEe-CC
Confidence 4578999999974 348889998 773 3567799999999999998765 44556663 34667666 44
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESA 425 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a 425 (463)
.+.+++.++|.++++| ++..++.
T Consensus 326 ~~~~~l~~~i~~~~~~--~~~~~~~ 348 (374)
T cd03801 326 GDPEALAEAILRLLDD--PELRRRL 348 (374)
T ss_pred CCHHHHHHHHHHHHcC--hHHHHHH
Confidence 5689999999999987 5544433
No 56
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.93 E-value=7.2e-07 Score=87.97 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=60.7
Q ss_pred cCCceEEeccChHh---hhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+|+.+.+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+.... .....+ +..+.|...+ .-
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~-~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVD-PR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeC-CC
Confidence 36899999999765 5889998 7744 3246899999999999876543 355556 3446787764 45
Q ss_pred CHHHHHHHHHHHHhH
Q 037374 402 DRNIVEKAVNDLMVK 416 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~ 416 (463)
+.+++.++|.+++++
T Consensus 354 ~~~~l~~~i~~l~~~ 368 (398)
T cd03800 354 DPEALAAALRRLLTD 368 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 799999999999986
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.93 E-value=5.5e-07 Score=89.36 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=55.6
Q ss_pred CCceEE-eccChHh---hhcccCcceeee-c------cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc
Q 037374 330 ERGYIA-GWVPQEE---VLAHKAVGGFLI-H------CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK 398 (463)
Q Consensus 330 ~nv~~~-~~vpq~~---iL~~~~~~~~I~-H------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 398 (463)
+|+.+. +|+|..+ +|..+++ +|. + |--+++.||+++|+|+|+... ......+ ++-+.|...
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE-
Confidence 466655 6888544 6889998 763 1 124479999999999998543 3455556 444678776
Q ss_pred CccCHHHHHHHHHHHHhH
Q 037374 399 DLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 399 ~~~~~~~l~~~i~~vl~~ 416 (463)
. +.++|+++|.++++|
T Consensus 366 ~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 366 G--DSEELAEQLIDLLSN 381 (415)
T ss_pred C--CHHHHHHHHHHHHhc
Confidence 3 799999999999886
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.92 E-value=1.6e-06 Score=84.24 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=58.5
Q ss_pred cCCceEEeccChHh---hhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+|+.+.+++|+.+ ++..+++ +|.- |...++.||+++|+|+|+... ...+..+. ..+.|...+ ..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~-~~~~g~~~~-~~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVA-DGENGFLFP-PG 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhee-cCceeEEeC-CC
Confidence 56899999998754 7889998 7733 345789999999999998653 34555663 346777775 22
Q ss_pred CHHHHHHHHHHHHhH
Q 037374 402 DRNIVEKAVNDLMVK 416 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~ 416 (463)
+. ++.+++.+++++
T Consensus 330 ~~-~~~~~i~~l~~~ 343 (374)
T cd03817 330 DE-ALAEALLRLLQD 343 (374)
T ss_pred CH-HHHHHHHHHHhC
Confidence 22 899999999986
No 59
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.92 E-value=1.9e-07 Score=91.13 Aligned_cols=136 Identities=11% Similarity=0.110 Sum_probs=84.5
Q ss_pred CeEEEEeccCcccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchhHHHH--hcCCceEEeccCh--
Q 037374 270 QSVIYVSFGSVAVMSRDQLIVFYYGLVNS-----KNGFLWVIRPDLISGKDGESQIPEEVVEA--TKERGYIAGWVPQ-- 340 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq-- 340 (463)
+++|+++.+-.... .+.+..+++++..+ +.++++....+ . .....+.+. ..+|+.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~-------~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN-------P-VVREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC-------h-HHHHHHHHHhCCCCCEEEECCCChHH
Confidence 45666665432211 13466677776653 34555543321 0 111112221 2357888877765
Q ss_pred -HhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHH
Q 037374 341 -EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKE 419 (463)
Q Consensus 341 -~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~ 419 (463)
..++..+++ +|+-.|.. +.||+++|+|+|+++...+++. +.+ .|.+..+ ..++++|.+++.++++| +
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv--~~d~~~i~~ai~~ll~~--~ 335 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLV--GTDKENITKAAKRLLTD--P 335 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEe--CCCHHHHHHHHHHHHhC--h
Confidence 456788888 99987754 7999999999999875555442 223 4666555 25889999999999987 7
Q ss_pred HHHHHHH
Q 037374 420 EFMESAD 426 (463)
Q Consensus 420 ~~~~~a~ 426 (463)
+.+++..
T Consensus 336 ~~~~~~~ 342 (365)
T TIGR00236 336 DEYKKMS 342 (365)
T ss_pred HHHHHhh
Confidence 6665544
No 60
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.90 E-value=2.3e-07 Score=88.38 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=92.2
Q ss_pred CeEEEEeccCcccCCHHHHHHHHHHHhhCCCc-EEEEEcCCCCCCCCCCCCCchhHHHHhc--CCceEEeccChHhhhcc
Q 037374 270 QSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNG-FLWVIRPDLISGKDGESQIPEEVVEATK--ERGYIAGWVPQEEVLAH 346 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vpq~~iL~~ 346 (463)
+++|.+--||-...-...+..++++...+..+ ..+.+... . .. +.+.+... ..+.+.+ .-.+++..
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~--~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------F--KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------C--cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 36888989988754445555555665544221 23333211 0 11 22222221 1233332 33568999
Q ss_pred cCcceeeeccChhhHHHHHHhCCccccccc--cchhhhHHHHHHH--hhhcceec-------------c-CccCHHHHHH
Q 037374 347 KAVGGFLIHCGWNSTLESIMAGMPMICWPS--FADQQINSRFVDE--VWKLGLDI-------------K-DLFDRNIVEK 408 (463)
Q Consensus 347 ~~~~~~I~HgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~--~~G~g~~l-------------~-~~~~~~~l~~ 408 (463)
+++ +|+-+|..|+ |+..+|+|||+ ++ ..-|..||+++.+ ..|+...+ . ++.|++.|.+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 999 9999999999 99999999998 54 4578889999951 35655555 3 5789999999
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHH
Q 037374 409 AVNDLMVKRKEEFMESADQMANLA 432 (463)
Q Consensus 409 ~i~~vl~~~~~~~~~~a~~l~~~~ 432 (463)
++.+ +.. +.+++...++.+.+
T Consensus 312 ~i~~-~~~--~~~~~~~~~l~~~l 332 (347)
T PRK14089 312 AYKE-MDR--EKFFKKSKELREYL 332 (347)
T ss_pred HHHH-HHH--HHHHHHHHHHHHHh
Confidence 9987 333 56666666666655
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.85 E-value=4.8e-06 Score=80.92 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=58.6
Q ss_pred hcCCceEEeccC-hH---hhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccC
Q 037374 328 TKERGYIAGWVP-QE---EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKD 399 (463)
Q Consensus 328 ~~~nv~~~~~vp-q~---~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 399 (463)
...++.+.+|++ +. .++..+++ +|.- |..+++.||+++|+|+|+... ......+. ..+.|..+ .
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~-~~~~g~~~-~ 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVD-HGVTGYLA-K 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhee-CCCceEEe-C
Confidence 345788889998 43 47889998 8774 335799999999999987643 23334443 22456555 3
Q ss_pred ccCHHHHHHHHHHHHhH
Q 037374 400 LFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl~~ 416 (463)
..+.+++.+++.++++|
T Consensus 314 ~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 314 PGDPEDLAEGIEWLLAD 330 (365)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 45789999999999986
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.85 E-value=1.4e-06 Score=84.47 Aligned_cols=132 Identities=19% Similarity=0.162 Sum_probs=82.9
Q ss_pred eEEEEeccCcccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCCCCCCCCCCchhHHH-----HhcCCceEEeccChH---
Q 037374 271 SVIYVSFGSVAVMSRDQLIVFYYGLVNSK-NGFLWVIRPDLISGKDGESQIPEEVVE-----ATKERGYIAGWVPQE--- 341 (463)
Q Consensus 271 ~~v~vslGs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~--- 341 (463)
..+++..|+.. ..+....+++++.+.. ..+++.-. |. ..+.+.+ ...+||.+.+|+|+.
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~-------g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGE-------GP---LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeC-------Ch---hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 44567777765 3344666777777766 44444432 11 1111211 134689999999974
Q ss_pred hhhcccCcceee--e---ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHh
Q 037374 342 EVLAHKAVGGFL--I---HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 342 ~iL~~~~~~~~I--~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
.++..+++ +| + +.| ..++.||+++|+|+|+....... ..+.+.-+.|... ..-+.+++.++|.++++
T Consensus 259 ~~~~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~~~-~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 259 ALLAACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGLVV-PPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceEEe-CCCCHHHHHHHHHHHHH
Confidence 48888898 55 3 234 34799999999999986544333 3332113566655 34589999999999999
Q ss_pred HhHHHHHH
Q 037374 416 KRKEEFME 423 (463)
Q Consensus 416 ~~~~~~~~ 423 (463)
| ++.++
T Consensus 332 ~--~~~~~ 337 (357)
T cd03795 332 D--PELRE 337 (357)
T ss_pred C--HHHHH
Confidence 7 54443
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.84 E-value=3.5e-06 Score=80.70 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=66.1
Q ss_pred cCCceEEeccC-hHhhhcccCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHhhh-cceeccCccC
Q 037374 329 KERGYIAGWVP-QEEVLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWK-LGLDIKDLFD 402 (463)
Q Consensus 329 ~~nv~~~~~vp-q~~iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~ 402 (463)
..++.+.++.. -..++..+++ +|.-.. .+++.||+++|+|+|+.+....+ ..+.+. | .|... +..+
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~-~~~~ 305 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLV-PNGD 305 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEe-CCCC
Confidence 35677777744 3569999998 776542 57899999999999986543322 233343 4 67666 4567
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 037374 403 RNIVEKAVNDLMVKRKEEFMESADQMANLAKK 434 (463)
Q Consensus 403 ~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~ 434 (463)
.+++.++|.++++| ++.+++..+-+..+.+
T Consensus 306 ~~~~~~~i~~ll~~--~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 306 VEALAEALLRLMED--EELRKRMGANARESAE 335 (348)
T ss_pred HHHHHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 89999999999998 7766655554444333
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.84 E-value=2.6e-06 Score=84.38 Aligned_cols=86 Identities=16% Similarity=0.030 Sum_probs=61.9
Q ss_pred cCCceEEeccChH---hhhcccCcceeee---c-cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLI---H-CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~---H-gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+++.+.+++|+. ++|..+++ +|. + |...++.||+++|+|+|+... ......+ ++-+.|...+ .-
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~-~~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVD-GH 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECC-CC
Confidence 4679999999864 47999998 773 2 334589999999999998654 3344455 3335676663 45
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHH
Q 037374 402 DRNIVEKAVNDLMVKRKEEFMES 424 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~~~~~~~~~ 424 (463)
+.++++++|.+++++ ++.+++
T Consensus 354 d~~~la~~i~~~l~~--~~~~~~ 374 (405)
T TIGR03449 354 DPADWADALARLLDD--PRTRIR 374 (405)
T ss_pred CHHHHHHHHHHHHhC--HHHHHH
Confidence 889999999999986 544433
No 65
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.83 E-value=1.5e-07 Score=91.83 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCeEEEEeccCcccC-CHHHHHHHHHHHhhCCC-cEEEEEcCCCCCCCCCCCCCchhHHHHh---cCCceEEeccChH--
Q 037374 269 KQSVIYVSFGSVAVM-SRDQLIVFYYGLVNSKN-GFLWVIRPDLISGKDGESQIPEEVVEAT---KERGYIAGWVPQE-- 341 (463)
Q Consensus 269 ~~~~v~vslGs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~nv~~~~~vpq~-- 341 (463)
+++.|++++|..... ..+.+..++++++.... ++.+....+.. +. ..+.. ..+.. .+|+.+.++.++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~---~~-~~l~~-~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR---TR-PRIRE-AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC---hH-HHHHH-HHHhhccCCCCEEEECCcCHHHH
Confidence 456777888766533 35667778888876533 24444432210 00 01111 11112 3578887766543
Q ss_pred -hhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHH
Q 037374 342 -EVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEE 420 (463)
Q Consensus 342 -~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~ 420 (463)
.++..+++ ||+-+| |.+.||++.|+|+|+++.. |. +..+.+ .|++..+. -+.++|.++|.+++++ +.
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~--~~~~~i~~~i~~ll~~--~~ 339 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG--TDPEAILAAIEKLLSD--EF 339 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC--CCHHHHHHHHHHHhcC--ch
Confidence 46778998 999999 7888999999999998743 22 333434 57776553 2589999999999997 54
Q ss_pred HH
Q 037374 421 FM 422 (463)
Q Consensus 421 ~~ 422 (463)
.+
T Consensus 340 ~~ 341 (363)
T cd03786 340 AY 341 (363)
T ss_pred hh
Confidence 44
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.83 E-value=1.2e-06 Score=86.69 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=55.2
Q ss_pred cCCceEEeccChH---hhhcccCcceeeec---cCh-hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIH---CGW-NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+++.+.+|+|+. .+|+.+++ +|.- -|. .++.||+++|+|+|+.+... ....+ +. |.+... ..
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~--~~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA--EP 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec--CC
Confidence 4578889999854 48888998 7642 243 39999999999999876542 33344 32 433222 23
Q ss_pred CHHHHHHHHHHHHhH
Q 037374 402 DRNIVEKAVNDLMVK 416 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~ 416 (463)
+.+++.+++.+++++
T Consensus 319 ~~~~l~~~l~~~l~~ 333 (398)
T cd03796 319 DVESIVRKLEEAISI 333 (398)
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999999884
No 67
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.83 E-value=2.4e-06 Score=82.66 Aligned_cols=80 Identities=21% Similarity=0.190 Sum_probs=60.7
Q ss_pred cCCceEEeccChH---hhhcccCcceee----eccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFL----IHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I----~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+|+.+.+++|+. .++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+ +..+.|... ..-
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~-~~~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLV-PPG 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEE-CCC
Confidence 4689999999864 47888888 66 335677899999999999876543 344555 334556655 456
Q ss_pred CHHHHHHHHHHHHhH
Q 037374 402 DRNIVEKAVNDLMVK 416 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~ 416 (463)
+.+++.++|.+++++
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 899999999999997
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.81 E-value=6.6e-06 Score=79.77 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=61.4
Q ss_pred cCCceEEeccChHh---hhcccCcceeeecc----ChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLIHC----GWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+. ......+ .. +.|...+ .
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~--~ 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD--D 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC--C
Confidence 46899999999544 6888888 65432 25689999999999998653 3345555 33 6666554 3
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHH
Q 037374 402 DRNIVEKAVNDLMVKRKEEFMESADQ 427 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~~~~~~~~~a~~ 427 (463)
+.+++.++|.+++++ ++.+++..+
T Consensus 331 ~~~~~~~~i~~l~~~--~~~~~~~~~ 354 (375)
T cd03821 331 DVDALAAALRRALEL--PQRLKAMGE 354 (375)
T ss_pred ChHHHHHHHHHHHhC--HHHHHHHHH
Confidence 449999999999997 544443333
No 69
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=5.5e-06 Score=80.75 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=63.0
Q ss_pred cCCceEEeccChHh---hhcccCcceeeec----------cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcce
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLIH----------CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGL 395 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~H----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~ 395 (463)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+ .+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeE
Confidence 56888889998654 6888898 6642 3367999999999999987653 35666643 46777
Q ss_pred eccCccCHHHHHHHHHHHHhHhHHHHH
Q 037374 396 DIKDLFDRNIVEKAVNDLMVKRKEEFM 422 (463)
Q Consensus 396 ~l~~~~~~~~l~~~i~~vl~~~~~~~~ 422 (463)
.. ..-+.+++.++|.++++| ++.+
T Consensus 317 ~~-~~~d~~~l~~~i~~l~~~--~~~~ 340 (367)
T cd05844 317 LV-PEGDVAALAAALGRLLAD--PDLR 340 (367)
T ss_pred EE-CCCCHHHHHHHHHHHHcC--HHHH
Confidence 66 455889999999999987 5533
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.75 E-value=1.8e-06 Score=86.13 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=62.4
Q ss_pred CceEEeccCh-HhhhcccCcceeeec-----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 331 RGYIAGWVPQ-EEVLAHKAVGGFLIH-----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 331 nv~~~~~vpq-~~iL~~~~~~~~I~H-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
++.+.+...+ ..+++.+++ ++.. +|..++.||+++|+|+|+.|...++.+....+.+ .|++... -+.+
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~---~d~~ 376 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV---EDAE 376 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE---CCHH
Confidence 3444454443 458888987 5442 3444699999999999999998888888777743 4766554 3789
Q ss_pred HHHHHHHHHHhHhHHHHHHH
Q 037374 405 IVEKAVNDLMVKRKEEFMES 424 (463)
Q Consensus 405 ~l~~~i~~vl~~~~~~~~~~ 424 (463)
+|.++|.++++| ++.+++
T Consensus 377 ~La~~l~~ll~~--~~~~~~ 394 (425)
T PRK05749 377 DLAKAVTYLLTD--PDARQA 394 (425)
T ss_pred HHHHHHHHHhcC--HHHHHH
Confidence 999999999997 555443
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.73 E-value=2e-06 Score=82.59 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=77.3
Q ss_pred EEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhH-HHH--hcCCceEEeccChH---hhhcc
Q 037374 273 IYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEV-VEA--TKERGYIAGWVPQE---EVLAH 346 (463)
Q Consensus 273 v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~--~~~nv~~~~~vpq~---~iL~~ 346 (463)
+.+..|... ..+....++++++..+.++++.-... ........ .+. ..+++.+.+++++. .+++.
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~-------~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS-------DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC-------CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 334556664 33445567778877777766554321 10111111 111 24789999999975 46888
Q ss_pred cCcceeee----ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 347 KAVGGFLI----HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 347 ~~~~~~I~----HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
+++ ++. +-| ..++.||+++|+|+|+... ..+...+ +.-..|...+. .+++.++|.+++..
T Consensus 244 ~d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 244 ARA--LLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVDS---VEELAAAVARADRL 308 (335)
T ss_pred CcE--EEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeCC---HHHHHHHHHHHhcc
Confidence 888 553 234 4589999999999997654 3344455 43225665532 89999999988764
No 72
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.70 E-value=1.8e-06 Score=84.09 Aligned_cols=164 Identities=12% Similarity=0.101 Sum_probs=92.5
Q ss_pred eEEEEeccCcccCCHHHHHHHHHHHhhCC--CcEEEEEcCCCCCCCCCCCCCchhHHH--HhcCCceEEeccCh-----H
Q 037374 271 SVIYVSFGSVAVMSRDQLIVFYYGLVNSK--NGFLWVIRPDLISGKDGESQIPEEVVE--ATKERGYIAGWVPQ-----E 341 (463)
Q Consensus 271 ~~v~vslGs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~~~~~vpq-----~ 341 (463)
+.+++..|.......+.+..+++++.... .++++ ++. |.....-....+ .+++||.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~------g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGD------GSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeC------CccHHHHHHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 34556777664323344566777776653 34333 322 211011111111 13568999999853 2
Q ss_pred hhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHh
Q 037374 342 EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKR 417 (463)
Q Consensus 342 ~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~ 417 (463)
+.++.+++ +|.- |-..++.||+++|+|+|+.-. .......+ +.-..|..+ ..-+.+++.++|.++++|
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv-~~~d~~~la~~i~~l~~~- 324 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELY-TPGNIDEFVGKLNKVISG- 324 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEE-CCCCHHHHHHHHHHHHhC-
Confidence 34556777 6643 336799999999999998641 12222344 433456665 456999999999999997
Q ss_pred HHH--HHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 418 KEE--FMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 418 ~~~--~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
++ ...+..+....+.++ ..++.+.++++.+++
T Consensus 325 -~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 358 (359)
T PRK09922 325 -EVKYQHDAIPNSIERFYEV-----LYFKNLNNALFSKLQ 358 (359)
T ss_pred -cccCCHHHHHHHHHHhhHH-----HHHHHHHHHHHHHhc
Confidence 54 233333333333333 335566666665554
No 73
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.68 E-value=6.1e-06 Score=81.31 Aligned_cols=79 Identities=16% Similarity=0.096 Sum_probs=57.4
Q ss_pred cCCceEEeccChH---hhhcccCcceeeec---cC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCcc
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIH---CG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 401 (463)
.+|+.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-. ......+.+ .+.|... . .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~-~~~g~~~-~-~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVD-GETGFLC-E-P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhcc-CCceEEe-C-C
Confidence 4689999999975 47888888 6642 12 3578999999999998643 233444533 3556555 3 3
Q ss_pred CHHHHHHHHHHHHhH
Q 037374 402 DRNIVEKAVNDLMVK 416 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~ 416 (463)
+.++++++|.+++++
T Consensus 350 ~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 TPEEFAEAMLKLAND 364 (392)
T ss_pred CHHHHHHHHHHHHhC
Confidence 889999999999987
No 74
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.66 E-value=9.3e-05 Score=79.16 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=60.1
Q ss_pred cCCceEEeccChHh---hhccc----Ccceeeec---cC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceec
Q 037374 329 KERGYIAGWVPQEE---VLAHK----AVGGFLIH---CG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~----~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l 397 (463)
.++|.+.+++++.+ ++..+ ++ ||.- =| ..++.||+++|+|+|+.... .....+ +.-..|..+
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII-~~g~nGlLV 619 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIH-RVLDNGLLV 619 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHh-ccCCcEEEE
Confidence 46788889988755 56555 35 7764 23 45899999999999997543 233344 322456655
Q ss_pred cCccCHHHHHHHHHHHHhHhHHHHHHHHH
Q 037374 398 KDLFDRNIVEKAVNDLMVKRKEEFMESAD 426 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~~~~~~~~~~a~ 426 (463)
..-+.+.|+++|.++++| +..+++..
T Consensus 620 -dP~D~eaLA~AL~~LL~D--pelr~~m~ 645 (1050)
T TIGR02468 620 -DPHDQQAIADALLKLVAD--KQLWAECR 645 (1050)
T ss_pred -CCCCHHHHHHHHHHHhhC--HHHHHHHH
Confidence 456899999999999997 55444433
No 75
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.63 E-value=1.9e-05 Score=76.63 Aligned_cols=94 Identities=12% Similarity=0.101 Sum_probs=63.5
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeecc----ChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIHC----GWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~Hg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+|+.+.++..+ ..+|..+++ +|.-. ..+++.||+++|+|+|+. |...+...+. +.|.. . ..-+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~-~~g~~--~-~~~~~ 313 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVG-DSGLI--V-PISDP 313 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEec-CCceE--e-CCCCH
Confidence 457888888765 568999998 66543 257899999999999874 4555666663 33443 3 34688
Q ss_pred HHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHH
Q 037374 404 NIVEKAVNDLMV-KRKEEFMESADQMANLAKK 434 (463)
Q Consensus 404 ~~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~ 434 (463)
+++.++|.++++ + +.+++...+-.+.+.+
T Consensus 314 ~~~~~~i~~ll~~~--~~~~~~~~~~~~~~~~ 343 (360)
T cd04951 314 EALANKIDEILKMS--GEERDIIGARRERIVK 343 (360)
T ss_pred HHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 999999999985 4 4555444433333333
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.62 E-value=1.6e-05 Score=76.85 Aligned_cols=80 Identities=23% Similarity=0.232 Sum_probs=59.3
Q ss_pred cCCceEEeccChH---hhhcccCcceeee----------ccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcce
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLI----------HCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGL 395 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~----------HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~ 395 (463)
++|+.+.+++|+. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceE
Confidence 5689999999854 47788888 666 34457999999999999986543 233344 4323776
Q ss_pred eccCccCHHHHHHHHHHHHhH
Q 037374 396 DIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 396 ~l~~~~~~~~l~~~i~~vl~~ 416 (463)
.. ..-+.+++.++|.++++|
T Consensus 308 ~~-~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LV-PPGDPEALADAIERLLDD 327 (355)
T ss_pred Ee-CCCCHHHHHHHHHHHHhC
Confidence 66 344899999999999986
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.61 E-value=6.9e-05 Score=72.54 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=56.1
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec----cC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccC
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH----CG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
.+++.+.+|.+. ..+|..+++ +|.= -| .+++.||+++|+|+|+... ......+ ..-+.|... ..-+
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~-~~~~ 316 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLV-PPGD 316 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEe-CCCC
Confidence 467888888653 558999998 5532 23 4599999999999987643 3345555 333467666 4568
Q ss_pred HHHHHHHHHHHHh
Q 037374 403 RNIVEKAVNDLMV 415 (463)
Q Consensus 403 ~~~l~~~i~~vl~ 415 (463)
.+++.++|..++.
T Consensus 317 ~~~l~~~i~~~~~ 329 (355)
T cd03819 317 AEALAQALDQILS 329 (355)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999976665
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.60 E-value=7.4e-05 Score=72.06 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=56.8
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+++.+.++.++ ..++..+++ +|..+. .+++.||+++|+|+|+. |...+...+ .. .|... ..-+.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~-~~~~~ 319 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLV-PPGDP 319 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEe-CCCCH
Confidence 356777766554 569999998 886544 47999999999999985 344555555 32 45544 33478
Q ss_pred HHHHHHHHHHHhH
Q 037374 404 NIVEKAVNDLMVK 416 (463)
Q Consensus 404 ~~l~~~i~~vl~~ 416 (463)
+++.++|.+++++
T Consensus 320 ~~l~~~i~~l~~~ 332 (365)
T cd03807 320 EALAEAIEALLAD 332 (365)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.57 E-value=1e-05 Score=77.47 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=55.8
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+++.+.++.+. .+++..+++ +|.- |..+++.||+++|+|+|+.... .....+. ..+.|... ..-+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~-~~~~g~~~-~~~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILE-DGENGLLV-PVGDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhc-CCCceEEE-CCCCH
Confidence 467888888875 569999998 6632 3466899999999999986443 5556664 34677766 44577
Q ss_pred HHH---HHHHHHHHhH
Q 037374 404 NIV---EKAVNDLMVK 416 (463)
Q Consensus 404 ~~l---~~~i~~vl~~ 416 (463)
+.+ .+++.+++++
T Consensus 317 ~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 317 AALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHHhccCC
Confidence 777 4555555555
No 80
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.53 E-value=7.6e-07 Score=71.15 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=78.8
Q ss_pred CeEEEEeccCcccCCH---HHHHHHHHHHhhCCC-cEEEEEcCCCCCCCCCCCCCchhHHHH-hcCCceE--EeccCh-H
Q 037374 270 QSVIYVSFGSVAVMSR---DQLIVFYYGLVNSKN-GFLWVIRPDLISGKDGESQIPEEVVEA-TKERGYI--AGWVPQ-E 341 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~---~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~~--~~~vpq-~ 341 (463)
...+|||-||-....- -....+...+.+.++ +.++.++..+. ..++..... ......+ .+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-------~~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-------FFGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-------CCCCHHHhhcccCCeEEEEEecCccHH
Confidence 3569999998873211 113346677777775 77888865421 122222110 1123333 477885 6
Q ss_pred hhhcccCcceeeeccChhhHHHHHHhCCccccccc----cchhhhHHHHHHHhhhcce
Q 037374 342 EVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS----FADQQINSRFVDEVWKLGL 395 (463)
Q Consensus 342 ~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~~G~g~ 395 (463)
+..+.+++ +|+|+|+||+.|.|..|+|.|+++- -..|-.-|..+++ .|.=.
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~ 130 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLY 130 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEE
Confidence 67778888 9999999999999999999999993 5789999999975 46543
No 81
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.52 E-value=0.00045 Score=69.19 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=59.2
Q ss_pred cCCceEEeccChHh---hhccc----Ccceeeecc---C-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceec
Q 037374 329 KERGYIAGWVPQEE---VLAHK----AVGGFLIHC---G-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~----~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l 397 (463)
.++|.+.+++++.+ +++.+ ++ ||.-. | ..++.||+++|+|+|+... ..+...+ +.-..|...
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 46788888888655 46655 56 87643 3 4599999999999998754 3344555 332456665
Q ss_pred cCccCHHHHHHHHHHHHhHhHHHHH
Q 037374 398 KDLFDRNIVEKAVNDLMVKRKEEFM 422 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~~~~~~~~ 422 (463)
..-+.++++++|.++++| +..+
T Consensus 389 -~~~d~~~la~~i~~ll~~--~~~~ 410 (439)
T TIGR02472 389 -DVLDLEAIASALEDALSD--SSQW 410 (439)
T ss_pred -CCCCHHHHHHHHHHHHhC--HHHH
Confidence 445889999999999997 5543
No 82
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.48 E-value=5.9e-05 Score=73.24 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=69.7
Q ss_pred EEeccCcccCCHHHHHHHHHHHhhCC--CcEEEEEcCCCCCCCCCCCCCchhHH--HHhcCCceEEeccChHh---hhcc
Q 037374 274 YVSFGSVAVMSRDQLIVFYYGLVNSK--NGFLWVIRPDLISGKDGESQIPEEVV--EATKERGYIAGWVPQEE---VLAH 346 (463)
Q Consensus 274 ~vslGs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~vpq~~---iL~~ 346 (463)
++..|+.. ..+.+..+++++.... .++++.-... .......... ....++|.+.+++|+.+ ++..
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~ivG~~~------~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLVIVGNAD------HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEEEEcCCC------CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 34567765 2334556667776654 4444333211 0001111111 12346899999999864 6667
Q ss_pred cCcceeeeccCh-----hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 347 KAVGGFLIHCGW-----NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 347 ~~~~~~I~HgG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
+++ ++-++-. +++.||+++|+|+|+..... +...+ +. .|...+ . .+.+.++|.++++|
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~-~--~~~l~~~i~~l~~~ 330 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFK-V--GDDLASLLEELEAD 330 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEec-C--chHHHHHHHHHHhC
Confidence 777 6655433 47999999999999865432 22222 22 233332 1 11299999999987
No 83
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.47 E-value=0.00038 Score=72.84 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=51.4
Q ss_pred cCCceEEecc-Ch---Hhhhcc----cCcceeee---ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhccee
Q 037374 329 KERGYIAGWV-PQ---EEVLAH----KAVGGFLI---HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLD 396 (463)
Q Consensus 329 ~~nv~~~~~v-pq---~~iL~~----~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~ 396 (463)
.++|.+.++. +. .+++.. +++ ||. .=| ..++.||+++|+|+|+.-. ...+..+.+ -..|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~d-g~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQD-GVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcC-CCcEEE
Confidence 4678877764 32 335542 345 764 223 4499999999999988643 345566643 245766
Q ss_pred ccCccCHHHHHHHHHHHH
Q 037374 397 IKDLFDRNIVEKAVNDLM 414 (463)
Q Consensus 397 l~~~~~~~~l~~~i~~vl 414 (463)
+ ..-+.++++++|.+++
T Consensus 691 V-dp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 691 I-DPYHGEEAAEKIVDFF 707 (784)
T ss_pred e-CCCCHHHHHHHHHHHH
Confidence 6 4457899999999886
No 84
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.47 E-value=1.9e-05 Score=76.75 Aligned_cols=131 Identities=14% Similarity=0.083 Sum_probs=81.1
Q ss_pred CCeEEEEeccCcc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHh--cCCceEEeccC---h
Q 037374 269 KQSVIYVSFGSVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEAT--KERGYIAGWVP---Q 340 (463)
Q Consensus 269 ~~~~v~vslGs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~vp---q 340 (463)
+++.|+|++=... ....+.+..+++++...+.++++.++.+. . +.. .+.+...+.. .+|+.+.+.++ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p--~~~-~i~~~i~~~~~~~~~v~l~~~l~~~~~ 275 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A--GSR-IINEAIEEYVNEHPNFRLFKSLGQERY 275 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C--Cch-HHHHHHHHHhcCCCCEEEECCCChHHH
Confidence 3468778775432 34457788999999887766666654321 0 100 1111122111 36888887665 4
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHh
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
..++.++++ +|+-++.|- .||.+.|+|.|.+- +.+ .-+ + .|..+.+ =..++++|.+++.++++
T Consensus 276 l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~-vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 276 LSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVID-VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEE-eCCCHHHHHHHHHHHhC
Confidence 558889999 999886655 99999999999774 211 111 2 2332221 24678999999999654
No 85
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.45 E-value=8.2e-05 Score=72.08 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=57.8
Q ss_pred hcCCceEEe-ccCh---HhhhcccCcceeee----c--cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceec
Q 037374 328 TKERGYIAG-WVPQ---EEVLAHKAVGGFLI----H--CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 328 ~~~nv~~~~-~vpq---~~iL~~~~~~~~I~----H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l 397 (463)
..+|+.+.+ |+|+ ..++..+++ +|. - |..+++.||+++|+|+|+.+... ...+.+ .+.|...
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEE
Confidence 346888884 5885 458888888 663 2 44568999999999999876543 233433 3667666
Q ss_pred cCccCHHHHHHHHHHHHhH
Q 037374 398 KDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~~ 416 (463)
+ .-+.+++.+++.++++|
T Consensus 317 ~-~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 317 P-PGDPAALAEAIRRLLAD 334 (366)
T ss_pred c-CCCHHHHHHHHHHHHcC
Confidence 3 44689999999999986
No 86
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.45 E-value=9.7e-05 Score=74.26 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=85.4
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHh--hC--CCcEEEEEcCCCCCCCCCCCCCchhHHHHh-cC---CceEEeccC
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLV--NS--KNGFLWVIRPDLISGKDGESQIPEEVVEAT-KE---RGYIAGWVP 339 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~---nv~~~~~vp 339 (463)
+++++|-+--||-.+.-...+..++++.+ .. +.++++..... ...+.+.+.. .. ++.++.--.
T Consensus 411 ~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~---------~~~~~i~~~~~~~~~~~~~ii~~~~ 481 (608)
T PRK01021 411 SDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP---------KYDHLILEVLQQEGCLHSHIVPSQF 481 (608)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch---------hhHHHHHHHHhhcCCCCeEEecCcc
Confidence 46688989899776544455666777776 33 34554443211 0011122211 11 223332101
Q ss_pred hHhhhcccCcceeeeccChhhHHHHHHhCCcccccc-ccchhhhHHHHHHH-----------hh--hcceecc---CccC
Q 037374 340 QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWP-SFADQQINSRFVDE-----------VW--KLGLDIK---DLFD 402 (463)
Q Consensus 340 q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~-----------~~--G~g~~l~---~~~~ 402 (463)
..++++.|++ .+.-+|. .+.|+...|+|||++= ...=-...|+++.+ -+ .+=.++- ++.|
T Consensus 482 ~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~t 558 (608)
T PRK01021 482 RYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQ 558 (608)
T ss_pred hHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCC
Confidence 2579999999 9988886 5679999999998853 22222334566543 01 1112222 3678
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhh
Q 037374 403 RNIVEKAVNDLMVKRKEEFMESADQMANLAKKSV 436 (463)
Q Consensus 403 ~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~ 436 (463)
++.|.+++ ++|+| ++.+++.++==+++++.+
T Consensus 559 pe~La~~l-~lL~d--~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 559 PEEVAAAL-DILKT--SQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHH-HHhcC--HHHHHHHHHHHHHHHHHh
Confidence 99999997 78876 554444444333334433
No 87
>PLN00142 sucrose synthase
Probab=98.45 E-value=7.5e-05 Score=78.07 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=54.1
Q ss_pred cCCceEEec----cChHhhhc----ccCcceeeec---cChh-hHHHHHHhCCccccccccchhhhHHHHHHHhhhccee
Q 037374 329 KERGYIAGW----VPQEEVLA----HKAVGGFLIH---CGWN-STLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLD 396 (463)
Q Consensus 329 ~~nv~~~~~----vpq~~iL~----~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~ 396 (463)
.++|.+.++ ++..+++. .+++ ||.= -|.| ++.||+++|+|+|+... ......+ +.-..|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 356666543 34445554 3455 7653 4544 89999999999988643 4455566 33235666
Q ss_pred ccCccCHHHHHHHHHHHH----hHhHHHHHHHHH
Q 037374 397 IKDLFDRNIVEKAVNDLM----VKRKEEFMESAD 426 (463)
Q Consensus 397 l~~~~~~~~l~~~i~~vl----~~~~~~~~~~a~ 426 (463)
+ ..-+.++++++|.+++ +| ++.+++..
T Consensus 714 V-~P~D~eaLA~aI~~lLekLl~D--p~lr~~mg 744 (815)
T PLN00142 714 I-DPYHGDEAANKIADFFEKCKED--PSYWNKIS 744 (815)
T ss_pred e-CCCCHHHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 6 3457888888887654 45 55554433
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.38 E-value=0.0007 Score=64.58 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCceEEeccC-hHhhhcccCc----ceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 330 ERGYIAGWVP-QEEVLAHKAV----GGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 330 ~nv~~~~~vp-q~~iL~~~~~----~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
.+|.+.|-+- ...++.-+++ +=++-+||+| ..|++++|+|++.=|+...|.+-++++. ..|.|+.++ +.+
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~-~~ga~~~v~---~~~ 374 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLL-QAGAGLQVE---DAD 374 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHH-hcCCeEEEC---CHH
Confidence 4677777664 4556666665 2345699997 6799999999999999999999999995 479999984 378
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 037374 405 IVEKAVNDLMVKRKEEFMESADQMANLAK 433 (463)
Q Consensus 405 ~l~~~i~~vl~~~~~~~~~~a~~l~~~~~ 433 (463)
.|.+++..+++| +..+++..+-+..+-
T Consensus 375 ~l~~~v~~l~~~--~~~r~~~~~~~~~~v 401 (419)
T COG1519 375 LLAKAVELLLAD--EDKREAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 888888888876 555444433333333
No 89
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.38 E-value=9.8e-05 Score=70.95 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=95.3
Q ss_pred CCCCeEEEEeccCcccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEec-cCh
Q 037374 267 QPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS-----KNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGW-VPQ 340 (463)
Q Consensus 267 ~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~-vpq 340 (463)
..++++|-+--||-..--...+..++++.+.+ +.++++........ .......+....++.+.-. -.-
T Consensus 181 ~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~------~~i~~~~~~~~~~~~~~~~~~~~ 254 (373)
T PF02684_consen 181 DPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHE------ELIEEILAEYPPDVSIVIIEGES 254 (373)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHH------HHHHHHHHhhCCCCeEEEcCCch
Confidence 35778999999977643334445556665542 34555544321000 0001111112233443322 234
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCcccccc-ccchhhhHHHHHHH--hh---------hcceecc-CccCHHHHH
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWP-SFADQQINSRFVDE--VW---------KLGLDIK-DLFDRNIVE 407 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P-~~~DQ~~na~rv~~--~~---------G~g~~l~-~~~~~~~l~ 407 (463)
.+++..+++ .+.-+|- .+.|+...|+|||++= ...=-+..|+++.+ .. .+-..+- ++.|++.|.
T Consensus 255 ~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~ 331 (373)
T PF02684_consen 255 YDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIA 331 (373)
T ss_pred HHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHH
Confidence 568889998 8887776 6789999999998853 33333445565532 11 1112222 488999999
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCch
Q 037374 408 KAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSL 442 (463)
Q Consensus 408 ~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 442 (463)
+++.++|+| ++.++......+.+++..+.|.++
T Consensus 332 ~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 332 AELLELLEN--PEKRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHHHHhhhhccCC
Confidence 999999998 666666666666666665555554
No 90
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.32 E-value=0.00011 Score=71.21 Aligned_cols=87 Identities=15% Similarity=0.075 Sum_probs=62.1
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.+++.+.++..+ .+++..+++ +|.- |-..++.||+++|+|+|+..... ....+ +. +.+... ..-+.
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~-~~~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLS-LDESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEe-CCCCH
Confidence 467888888654 569999998 6653 45679999999999999865432 33444 33 555444 33468
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHH
Q 037374 404 NIVEKAVNDLMVKRKEEFMESAD 426 (463)
Q Consensus 404 ~~l~~~i~~vl~~~~~~~~~~a~ 426 (463)
++++++|.++++| ++.+++..
T Consensus 319 ~~~a~~i~~l~~~--~~~~~~~~ 339 (358)
T cd03812 319 EIWAEEILKLKSE--DRRERSSE 339 (358)
T ss_pred HHHHHHHHHHHhC--cchhhhhh
Confidence 9999999999998 66655443
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.32 E-value=0.0001 Score=71.32 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred hcCCceEEeccChH---hhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 328 TKERGYIAGWVPQE---EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 328 ~~~nv~~~~~vpq~---~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
..+|+.+.+++|+. ++|..+++ +|.- |..+++.||+++|+|+|+.... .....+ .. .|..+ ..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~-~~ 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYF-DP 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeee-CC
Confidence 45789999999875 47888888 5533 3456899999999999985442 222223 22 23333 23
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESADQMANL 431 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~ 431 (463)
-+.+++.++|.++++| ++.+.+..+-+..
T Consensus 321 ~~~~~~~~~i~~l~~~--~~~~~~~~~~~~~ 349 (365)
T cd03809 321 LDPEALAAAIERLLED--PALREELRERGLA 349 (365)
T ss_pred CCHHHHHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 4889999999999987 6666655554443
No 92
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.30 E-value=0.00049 Score=69.44 Aligned_cols=132 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred eEEEEeccCcccCCHHHHHHHHHHHhh---CCCcEEEEEcCCCCCCCCCCC--CCchhHHHHhcCCceE-EeccCh--Hh
Q 037374 271 SVIYVSFGSVAVMSRDQLIVFYYGLVN---SKNGFLWVIRPDLISGKDGES--QIPEEVVEATKERGYI-AGWVPQ--EE 342 (463)
Q Consensus 271 ~~v~vslGs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~nv~~-~~~vpq--~~ 342 (463)
..+++..|... ..+-+..+++++.. .+.++++.-. |... .....+.+..+.++.+ .+|-.. ..
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lvivG~-------g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~ 352 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLLGT-------GDPELEEAFRALAARYPGKVGVQIGYDEALAHR 352 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEEec-------CcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHH
Confidence 34556667665 22334445555443 3566655532 2110 0011222334556654 366333 25
Q ss_pred hhcccCcceeee---ccChh-hHHHHHHhCCcccccccc--chhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHh
Q 037374 343 VLAHKAVGGFLI---HCGWN-STLESIMAGMPMICWPSF--ADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 343 iL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
+++.+++ +|. +-|.| +..||+++|+|.|+.... .|.-.+...-.+ -+.|... ..-++++|.++|.++++
T Consensus 353 ~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv-~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 353 IYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVF-DDFNAEDLLRALRRALE 427 (466)
T ss_pred HHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEe-CCCCHHHHHHHHHHHHH
Confidence 7899998 774 33544 888999999999886432 221111100012 2667766 45688999999999886
No 93
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=0.00015 Score=68.51 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=93.0
Q ss_pred CCCCeEEEEeccCcccCCHHHHHHHHHHHhhC---CCcEEEEEcCCCCCCCCCCCCCchhHH-HHhc--CCceEE---ec
Q 037374 267 QPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS---KNGFLWVIRPDLISGKDGESQIPEEVV-EATK--ERGYIA---GW 337 (463)
Q Consensus 267 ~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~--~nv~~~---~~ 337 (463)
.+.+..|.+|+=-..+.. +.+..+.+++.+. ...+.+.++.+... ....+. +.+. +|+.+. +|
T Consensus 201 ~~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~-------~v~e~~~~~L~~~~~v~li~pl~~ 272 (383)
T COG0381 201 DKDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP-------RVRELVLKRLKNVERVKLIDPLGY 272 (383)
T ss_pred cccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh-------hhhHHHHHHhCCCCcEEEeCCcch
Confidence 345678888864444333 3455555554432 13455555544211 111222 2333 357776 67
Q ss_pred cChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHh
Q 037374 338 VPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKR 417 (463)
Q Consensus 338 vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~ 417 (463)
.+...++.++.+ ++|-+|. -.-||-..|+|.+++=..-++++ ++ + .|.-+.+ ..+.+.|.+++..++++
T Consensus 273 ~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lv--g~~~~~i~~~~~~ll~~- 341 (383)
T COG0381 273 LDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILV--GTDEENILDAATELLED- 341 (383)
T ss_pred HHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEe--CccHHHHHHHHHHHhhC-
Confidence 788889999998 9999875 56899999999999999999986 44 4 4655555 46779999999999998
Q ss_pred HHHHHHHHHHH
Q 037374 418 KEEFMESADQM 428 (463)
Q Consensus 418 ~~~~~~~a~~l 428 (463)
+++.++.+..
T Consensus 342 -~~~~~~m~~~ 351 (383)
T COG0381 342 -EEFYERMSNA 351 (383)
T ss_pred -hHHHHHHhcc
Confidence 6776544433
No 94
>PLN02275 transferase, transferring glycosyl groups
Probab=98.29 E-value=0.00045 Score=67.53 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCceEEe-ccChHh---hhcccCcceeee-c-----cC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc
Q 037374 330 ERGYIAG-WVPQEE---VLAHKAVGGFLI-H-----CG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK 398 (463)
Q Consensus 330 ~nv~~~~-~vpq~~---iL~~~~~~~~I~-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 398 (463)
+|+.+.. |+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...+ ++-+.|...+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 4666654 788755 5999999 773 1 12 3579999999999998643 3355666 4445787774
Q ss_pred CccCHHHHHHHHHHHH
Q 037374 399 DLFDRNIVEKAVNDLM 414 (463)
Q Consensus 399 ~~~~~~~l~~~i~~vl 414 (463)
+.++++++|.++|
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 5888999988764
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.29 E-value=0.001 Score=65.93 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=51.9
Q ss_pred EEeccChHhhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHH
Q 037374 334 IAGWVPQEEVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKA 409 (463)
Q Consensus 334 ~~~~vpq~~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~ 409 (463)
+.++.+..+++..+++ ||.= +=..++.||+++|+|+|+.-... + ..+.+ -+.|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec---CCHHHHHHH
Confidence 3466677779999998 9877 44678999999999999975432 2 33322 2444333 368899999
Q ss_pred HHHHHhH
Q 037374 410 VNDLMVK 416 (463)
Q Consensus 410 i~~vl~~ 416 (463)
+.++|++
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999984
No 96
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.23 E-value=0.00043 Score=67.73 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=56.9
Q ss_pred CCceEEeccCh-HhhhcccCcceee--ec--cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 330 ERGYIAGWVPQ-EEVLAHKAVGGFL--IH--CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 330 ~nv~~~~~vpq-~~iL~~~~~~~~I--~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
+++.+.++..+ .++|..+++ +| ++ |-..++.||+++|+|+|+... ..+...+ +.-..|..+ ..-+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~-~~~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALV-PPGDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEe-CCCCHH
Confidence 45666676553 568999999 77 33 446699999999999999654 3345555 332456555 446889
Q ss_pred HHHHHHHHHHhH
Q 037374 405 IVEKAVNDLMVK 416 (463)
Q Consensus 405 ~l~~~i~~vl~~ 416 (463)
+++++|.+++++
T Consensus 327 ~la~~i~~l~~~ 338 (374)
T TIGR03088 327 ALARALQPYVSD 338 (374)
T ss_pred HHHHHHHHHHhC
Confidence 999999999986
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.19 E-value=0.00012 Score=72.34 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=60.0
Q ss_pred cCCceEEeccCh-HhhhcccCcceee--ec--cChh-hHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccC
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFL--IH--CGWN-STLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I--~H--gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
.++|.+.+++++ ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. +....|.|..+. -+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~--~~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVA--AD 348 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEeC--CC
Confidence 468999999986 458999999 76 32 3543 699999999999998754322 111235666553 58
Q ss_pred HHHHHHHHHHHHhHhHHHHHH
Q 037374 403 RNIVEKAVNDLMVKRKEEFME 423 (463)
Q Consensus 403 ~~~l~~~i~~vl~~~~~~~~~ 423 (463)
.++++++|.++++| ++.++
T Consensus 349 ~~~la~ai~~ll~~--~~~~~ 367 (397)
T TIGR03087 349 PADFAAAILALLAN--PAERE 367 (397)
T ss_pred HHHHHHHHHHHHcC--HHHHH
Confidence 99999999999987 55443
No 98
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.19 E-value=0.0018 Score=63.56 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=75.2
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHhhC--CCcEEEEEcCCCCCCCCCCCCCchhHHHH---h---cCCceEE-eccChH-
Q 037374 272 VIYVSFGSVAVMSRDQLIVFYYGLVNS--KNGFLWVIRPDLISGKDGESQIPEEVVEA---T---KERGYIA-GWVPQE- 341 (463)
Q Consensus 272 ~v~vslGs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~---~~nv~~~-~~vpq~- 341 (463)
.+++..|... ..+.+..++++++.. +.++++..++.. ...+.+.+.+. . ..++.+. +++++.
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD------TPEVAEEVRQAVALLDRNRTGIIWINKMLPKEE 273 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC------cHHHHHHHHHHHHHhccccCceEEecCCCCHHH
Confidence 3455667655 224455666666654 455555543211 00111222111 1 1245544 678753
Q ss_pred --hhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-CccC----HHHHHHHH
Q 037374 342 --EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFD----RNIVEKAV 410 (463)
Q Consensus 342 --~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~----~~~l~~~i 410 (463)
.++..+++ +|.= |...++.||+++|+|+|+... ......+. .-+.|..++ .+.+ .+++.++|
T Consensus 274 ~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~-~~~~G~~~~~~~~~~~~~~~~l~~~i 346 (388)
T TIGR02149 274 LVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVV-DGETGFLVPPDNSDADGFQAELAKAI 346 (388)
T ss_pred HHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhh-CCCceEEcCCCCCcccchHHHHHHHH
Confidence 47889998 7752 334577999999999998653 34555563 335677775 2221 28899999
Q ss_pred HHHHhH
Q 037374 411 NDLMVK 416 (463)
Q Consensus 411 ~~vl~~ 416 (463)
.++++|
T Consensus 347 ~~l~~~ 352 (388)
T TIGR02149 347 NILLAD 352 (388)
T ss_pred HHHHhC
Confidence 999986
No 99
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.11 E-value=7.1e-06 Score=78.85 Aligned_cols=139 Identities=10% Similarity=0.119 Sum_probs=81.6
Q ss_pred CCCeEEEEeccCcccCC-H---HHHHHHHHHHhhC-CCcEEEEEcCCCCCCCCCCCCCchhHHHHhc--CCceEEeccC-
Q 037374 268 PKQSVIYVSFGSVAVMS-R---DQLIVFYYGLVNS-KNGFLWVIRPDLISGKDGESQIPEEVVEATK--ERGYIAGWVP- 339 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~vp- 339 (463)
..++.|+|++=...... + ..+..++.++.+. +.+++|.+.+.. .......+.+. +|++++..++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--------~~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--------RGSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H--------HHHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc--------hHHHHHHHHhcccCCEEEECCCCH
Confidence 57889999985444444 3 4455667777766 678889886321 01111112121 4899986665
Q ss_pred --hHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHH-HhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 340 --QEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVD-EVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 340 --q~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~-~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
...+|.++++ +|+..| |-.-||.+.|+|.|.+ .++..|-. ...|-.+.+ ..+.++|.+++.+++++
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nvlv--~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNVLV--GTDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEEEE--TSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceEEe--CCCHHHHHHHHHHHHhC
Confidence 4568889999 999999 5555999999999999 22333321 112444443 37899999999999986
Q ss_pred hHHHHHHHHHH
Q 037374 417 RKEEFMESADQ 427 (463)
Q Consensus 417 ~~~~~~~~a~~ 427 (463)
..+.++.+.
T Consensus 319 --~~~~~~~~~ 327 (346)
T PF02350_consen 319 --KDFYRKLKN 327 (346)
T ss_dssp --HHHHHHHHC
T ss_pred --hHHHHhhcc
Confidence 455554443
No 100
>PLN02949 transferase, transferring glycosyl groups
Probab=98.07 E-value=0.004 Score=62.44 Aligned_cols=95 Identities=17% Similarity=0.092 Sum_probs=58.8
Q ss_pred cCCceEEeccChHh---hhcccCcceeee---ccChh-hHHHHHHhCCccccccccchhhhHHHHHHHh-hh-cceeccC
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLI---HCGWN-STLESIMAGMPMICWPSFADQQINSRFVDEV-WK-LGLDIKD 399 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~G-~g~~l~~ 399 (463)
.++|.+.+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|+|+.....-- ...+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 57899999998654 7888888 773 23333 799999999999997543200 0011110 01 23222
Q ss_pred ccCHHHHHHHHHHHHh-H--hHHHHHHHHHHHHHH
Q 037374 400 LFDRNIVEKAVNDLMV-K--RKEEFMESADQMANL 431 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl~-~--~~~~~~~~a~~l~~~ 431 (463)
-+.++++++|.++++ + ...++.+++++-.++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 288999999999997 3 112455555544443
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.05 E-value=0.0036 Score=63.42 Aligned_cols=82 Identities=11% Similarity=-0.027 Sum_probs=54.8
Q ss_pred HhcCCceEEeccChH---hhhcccCcceeeec---cChh-hHHHHHHhCCccccccccchhhhHHHHHHH-----hhhcc
Q 037374 327 ATKERGYIAGWVPQE---EVLAHKAVGGFLIH---CGWN-STLESIMAGMPMICWPSFADQQINSRFVDE-----VWKLG 394 (463)
Q Consensus 327 ~~~~nv~~~~~vpq~---~iL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-----~~G~g 394 (463)
+.+.++.+....+.. .+++.+++ +|.= -|.| +..||+++|+|.|+.... .....+.+ .-+.|
T Consensus 343 ~~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~g----g~~e~v~~~~~~~~~~~G 416 (473)
T TIGR02095 343 RYPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTG----GLADTVVDGDPEAESGTG 416 (473)
T ss_pred HCCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCC----CccceEecCCCCCCCCce
Confidence 345677776555543 48889998 7743 2444 788999999999886542 12222211 11667
Q ss_pred eeccCccCHHHHHHHHHHHHh
Q 037374 395 LDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 395 ~~l~~~~~~~~l~~~i~~vl~ 415 (463)
... ..-+++++.++|.+++.
T Consensus 417 ~l~-~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 417 FLF-EEYDPGALLAALSRALR 436 (473)
T ss_pred EEe-CCCCHHHHHHHHHHHHH
Confidence 666 45688999999999887
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.97 E-value=0.011 Score=61.99 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=64.3
Q ss_pred cCCceEEeccCh-HhhhcccCcceeee---ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-CccC
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLI---HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFD 402 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~ 402 (463)
.++|.+.+|.++ ..+|..+++ ||. +.| .+++.||+++|+|+|+... ......+ +.-..|..++ .+.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV-~dg~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAV-QEGVTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECC----CChHHHc-cCCCCEEEeCCCCCC
Confidence 467888899875 458999998 765 455 5689999999999998754 2345556 3323577776 5666
Q ss_pred HHHHHHHHHHHHh----HhHHHHHHHHHHHH
Q 037374 403 RNIVEKAVNDLMV----KRKEEFMESADQMA 429 (463)
Q Consensus 403 ~~~l~~~i~~vl~----~~~~~~~~~a~~l~ 429 (463)
.+++.+++.+++. + +.+++++++..
T Consensus 646 ~~~La~aL~~ll~~l~~~--~~l~~~ar~~a 674 (694)
T PRK15179 646 APDVAEALARIHDMCAAD--PGIARKAADWA 674 (694)
T ss_pred hHHHHHHHHHHHhChhcc--HHHHHHHHHHH
Confidence 6677777766654 4 66776665544
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.96 E-value=0.0049 Score=62.44 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=52.9
Q ss_pred cCCceEEeccChH---hhhcccCcceeeec---cCh-hhHHHHHHhCCcccccccc--chhhhHHHHHHHhhhcceeccC
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIH---CGW-NSTLESIMAGMPMICWPSF--ADQQINSRFVDEVWKLGLDIKD 399 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~H---gG~-gs~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~~G~g~~l~~ 399 (463)
++|+.+....++. .++..+++ ++.- -|. .+..||+++|+|+|+.... .|--.+...-.+ -|.|... .
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~-~ 425 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVF-E 425 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEe-C
Confidence 5678765333432 47888898 7743 122 4788999999999876542 221111111102 2578777 4
Q ss_pred ccCHHHHHHHHHHHHhH
Q 037374 400 LFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl~~ 416 (463)
.-+.+++.++|.++++.
T Consensus 426 ~~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 426 GYNADALLAALRRALAL 442 (476)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55789999999999863
No 104
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.95 E-value=0.0094 Score=58.24 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=55.9
Q ss_pred cCCceEEecc--Ch---HhhhcccCcceeeecc---C-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccC
Q 037374 329 KERGYIAGWV--PQ---EEVLAHKAVGGFLIHC---G-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKD 399 (463)
Q Consensus 329 ~~nv~~~~~v--pq---~~iL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 399 (463)
.+++.+.++. ++ ..+++.+++ |+.-+ | ..++.||+++|+|+|+.... .....+ ..-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4578888776 43 347888888 88543 2 44999999999999986532 233344 3334565442
Q ss_pred ccCHHHHHHHHHHHHhHhHHHHHHH
Q 037374 400 LFDRNIVEKAVNDLMVKRKEEFMES 424 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl~~~~~~~~~~ 424 (463)
+.+.++.+|.+++++ ++.+++
T Consensus 323 --~~~~~a~~i~~ll~~--~~~~~~ 343 (372)
T cd03792 323 --TVEEAAVRILYLLRD--PELRRK 343 (372)
T ss_pred --CcHHHHHHHHHHHcC--HHHHHH
Confidence 467788899999986 554433
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.0052 Score=58.15 Aligned_cols=170 Identities=15% Similarity=0.123 Sum_probs=94.5
Q ss_pred CCCCeEEEEeccCcccCCHHHHHHHHHHHhhC-----CCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCc-eEEecc-C
Q 037374 267 QPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNS-----KNGFLWVIRPDLISGKDGESQIPEEVVEATKERG-YIAGWV-P 339 (463)
Q Consensus 267 ~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv-~~~~~v-p 339 (463)
..+++++.+-.||-.+.-...+..+.++...+ +.+++.-+...... ...... ...+. ...-++ +
T Consensus 185 ~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~------~~~~~~---~~~~~~~~~~~~~~ 255 (381)
T COG0763 185 DADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYR------RIIEEA---LKWEVAGLSLILID 255 (381)
T ss_pred CCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHH------HHHHHH---hhccccCceEEecC
Confidence 45778999999987743333444455555543 35666666432100 111111 11222 122233 2
Q ss_pred h--HhhhcccCcceeeeccChhhHHHHHHhCCccccccc-cchhhhHHHHHHHhhh------------cceecc-CccCH
Q 037374 340 Q--EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS-FADQQINSRFVDEVWK------------LGLDIK-DLFDR 403 (463)
Q Consensus 340 q--~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~-~~DQ~~na~rv~~~~G------------~g~~l~-~~~~~ 403 (463)
+ .+.+..||+ .+.-+|- -+.|+..+|+|||+.=- ..=-+..|+++.. .. +...+- +..++
T Consensus 256 ~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~p 331 (381)
T COG0763 256 GEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTP 331 (381)
T ss_pred chHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCH
Confidence 2 337888888 8888886 45799999999988531 1112223444332 11 222222 47889
Q ss_pred HHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 404 NIVEKAVNDLMVKR--KEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 404 ~~l~~~i~~vl~~~--~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
+.|.+++..++.|. ...+++...++.+. +++++.++.+++.+++.+
T Consensus 332 e~la~~l~~ll~~~~~~~~~~~~~~~l~~~----l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 332 ENLARALEELLLNGDRREALKEKFRELHQY----LREDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHHhcChHhHHHHHHHHHHHHHH----HcCCcHHHHHHHHHHHHh
Confidence 99999999999871 12444444445444 444666666666666654
No 106
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.91 E-value=0.00063 Score=66.86 Aligned_cols=143 Identities=19% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHH------hcCCceEEeccChH
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEA------TKERGYIAGWVPQE 341 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~nv~~~~~vpq~ 341 (463)
++..++|.+|......+++.+..-.+-+++.+.-.+|...... .....+.+. .++.+.+.++.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~--------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA--------SGEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST--------THHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH--------HHHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 4567999999999999999999999999999998898875321 111222211 14567778888866
Q ss_pred hhh---cccCcceee---eccChhhHHHHHHhCCccccccccc-hhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHH
Q 037374 342 EVL---AHKAVGGFL---IHCGWNSTLESIMAGMPMICWPSFA-DQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLM 414 (463)
Q Consensus 342 ~iL---~~~~~~~~I---~HgG~gs~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl 414 (463)
+.| ..+|+ ++ ..+|.+|++|||+.|||+|.+|--. =...-|..+ ..+|+...+- .|.++-.+.-.++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElIA--~s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELIA--DSEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---SSHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhcC--CCHHHHHHHHHHHh
Confidence 544 44565 54 5789999999999999999999532 233345555 4578886653 34555444444665
Q ss_pred hHhHHHHHHHH
Q 037374 415 VKRKEEFMESA 425 (463)
Q Consensus 415 ~~~~~~~~~~a 425 (463)
+| ++++++.
T Consensus 429 ~D--~~~l~~l 437 (468)
T PF13844_consen 429 TD--PERLRAL 437 (468)
T ss_dssp H---HHHHHHH
T ss_pred CC--HHHHHHH
Confidence 66 5555433
No 107
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0003 Score=55.47 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=71.2
Q ss_pred EEEeccCcccCCHHHHHH--HHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCC-ceEEecc--C-hHhhhcc
Q 037374 273 IYVSFGSVAVMSRDQLIV--FYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKER-GYIAGWV--P-QEEVLAH 346 (463)
Q Consensus 273 v~vslGs~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~~~~~v--p-q~~iL~~ 346 (463)
||||-||....=...+.. +..-.+....++|+.+++. + . .|-| .++.+|. + .+.+-..
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d--~--------kpvagl~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------D--I--------KPVAGLRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------C--c--------ccccccEEEeechHHHHHHHhhc
Confidence 789999885211111111 2222223456889999642 1 1 1223 3565554 4 4567778
Q ss_pred cCcceeeeccChhhHHHHHHhCCcccccccc--------chhhhHHHHHHHhhhcceecc
Q 037374 347 KAVGGFLIHCGWNSTLESIMAGMPMICWPSF--------ADQQINSRFVDEVWKLGLDIK 398 (463)
Q Consensus 347 ~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~--------~DQ~~na~rv~~~~G~g~~l~ 398 (463)
+++ +|+|+|.||+..++..++|.+++|-. ..|-.-|..+++ ++.=....
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~s 122 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACS 122 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEc
Confidence 887 99999999999999999999999953 368888888865 67766664
No 108
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.75 E-value=0.00033 Score=60.21 Aligned_cols=90 Identities=22% Similarity=0.261 Sum_probs=65.9
Q ss_pred hcCCceEEeccCh---HhhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 328 TKERGYIAGWVPQ---EEVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 328 ~~~nv~~~~~vpq---~~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
..+++.+.+++++ ..++..+++ +|+. |...++.||+++|+|+|+. |...+...+ ...+.|..++ .
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~-~ 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFD-P 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEES-T
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeC-C
Confidence 3568999999983 458889998 8877 6778999999999999874 455556666 4446688775 3
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHH
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESADQ 427 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a~~ 427 (463)
.+.+++.++|.+++++ ++.+++..+
T Consensus 143 ~~~~~l~~~i~~~l~~--~~~~~~l~~ 167 (172)
T PF00534_consen 143 NDIEELADAIEKLLND--PELRQKLGK 167 (172)
T ss_dssp TSHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC--HHHHHHHHH
Confidence 3999999999999998 655544433
No 109
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.75 E-value=0.017 Score=52.78 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=75.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEecC-cchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHH
Q 037374 14 LPGVGHVNSMLKLAELLSHAGIKITFLNTE-YYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDS 92 (463)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~ 92 (463)
++-.-|+.-+-.|.++|.++||+|.+.+-+ ....++.+..| +.+..+...- ..++.+.+-.
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg-----------f~~~~Igk~g-------~~tl~~Kl~~ 68 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG-----------FPYKSIGKHG-------GVTLKEKLLE 68 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC-----------CCeEeecccC-------CccHHHHHHH
Confidence 345568888899999999999999998865 33346666556 7777666421 1233322222
Q ss_pred HHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecchh
Q 037374 93 LNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~ 143 (463)
+.. ..-.+.++..+. +||+.+. -..+.+.-+|.-+|+|++.+.-+.-
T Consensus 69 ~~e-R~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 69 SAE-RVYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHH-HHHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 221 344566777776 9999999 5688899999999999999865544
No 110
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.74 E-value=0.0068 Score=60.25 Aligned_cols=79 Identities=14% Similarity=0.009 Sum_probs=54.2
Q ss_pred cCCceEEeccChH---hhhcccCcceeeecc---C-hhhHHHHHHhCCccccccccchhhhHHHHHHH---hhhcceecc
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIHC---G-WNSTLESIMAGMPMICWPSFADQQINSRFVDE---VWKLGLDIK 398 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~Hg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~~G~g~~l~ 398 (463)
.++|.+.+++|+. .+|..+++ +|+-. | .-++.||+++|+|+|+.-.... ..-+.+ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe-
Confidence 5689999999865 47888888 66421 2 3488999999999987643221 111112 22456554
Q ss_pred CccCHHHHHHHHHHHHhH
Q 037374 399 DLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 399 ~~~~~~~l~~~i~~vl~~ 416 (463)
.+.++++++|.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999984
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.72 E-value=0.032 Score=54.57 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=51.9
Q ss_pred CCceEEeccChHh---hhcccCcceeee--------ccCh-hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceec
Q 037374 330 ERGYIAGWVPQEE---VLAHKAVGGFLI--------HCGW-NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 330 ~nv~~~~~vpq~~---iL~~~~~~~~I~--------HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l 397 (463)
+||.+.+++|+.+ +|.++++ +|. .++. +.+.|++++|+|+|..+. ...+ +..+ +..+
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv--~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~ 322 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDV--AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVL 322 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCE--EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEE
Confidence 6999999999655 6788888 442 2332 358999999999998753 1222 2223 3333
Q ss_pred cCccCHHHHHHHHHHHHhH
Q 037374 398 KDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~~ 416 (463)
. .-|.+++.++|.+++.+
T Consensus 323 ~-~~d~~~~~~ai~~~l~~ 340 (373)
T cd04950 323 I-ADDPEEFVAAIEKALLE 340 (373)
T ss_pred e-CCCHHHHHHHHHHHHhc
Confidence 2 23899999999998764
No 112
>PLN02316 synthase/transferase
Probab=97.63 E-value=0.1 Score=56.80 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=53.5
Q ss_pred cCCceEEeccChH---hhhcccCcceeeec----cChhhHHHHHHhCCcccccccc--chhhhH-------HHHHHHhhh
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSF--ADQQIN-------SRFVDEVWK 392 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~--~DQ~~n-------a~rv~~~~G 392 (463)
++++.+....+.. .+++.+++ |+.- +=..+.+||+++|+|.|+.... .|.-.. +... ..-+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~-g~~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQ-GLEP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccc-ccCC
Confidence 4567776555543 58999998 8843 2234899999999988875432 222111 1100 0014
Q ss_pred cceeccCccCHHHHHHHHHHHHhH
Q 037374 393 LGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 393 ~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
.|... ...+++.|..+|.++|.+
T Consensus 976 tGflf-~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSF-DGADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEe-CCCCHHHHHHHHHHHHhh
Confidence 56655 566899999999999874
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.62 E-value=0.0027 Score=62.33 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=61.6
Q ss_pred hcCCceEEeccChHh---hhcccCcceeeec----cCh-hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccC
Q 037374 328 TKERGYIAGWVPQEE---VLAHKAVGGFLIH----CGW-NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKD 399 (463)
Q Consensus 328 ~~~nv~~~~~vpq~~---iL~~~~~~~~I~H----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 399 (463)
...++.+.+++|+.+ +|+.+++ +|.- .|. .++.||+++|+|+|+... ..+...+ +.-..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv-~~~~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFV-LEGITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhc-ccCCceEEEeC
Confidence 456888889998644 6889998 7753 333 578899999999998754 2344555 33345654434
Q ss_pred ccCHHHHHHHHHHHHhHhHHHH
Q 037374 400 LFDRNIVEKAVNDLMVKRKEEF 421 (463)
Q Consensus 400 ~~~~~~l~~~i~~vl~~~~~~~ 421 (463)
..+.++++++|.++++| ++.
T Consensus 328 ~~d~~~la~~I~~ll~d--~~~ 347 (380)
T PRK15484 328 PMTSDSIISDINRTLAD--PEL 347 (380)
T ss_pred CCCHHHHHHHHHHHHcC--HHH
Confidence 56899999999999997 654
No 114
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.60 E-value=0.0021 Score=63.66 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=60.5
Q ss_pred cCCceEEeccChHh---hhcccCcceeeec---------cCh-hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcce
Q 037374 329 KERGYIAGWVPQEE---VLAHKAVGGFLIH---------CGW-NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGL 395 (463)
Q Consensus 329 ~~nv~~~~~vpq~~---iL~~~~~~~~I~H---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~ 395 (463)
.+++.+.+|+|+.+ +|..+++ +|.- -|. .++.||+++|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46789999999754 7889998 7752 244 5789999999999987442 344455 3324566
Q ss_pred eccCccCHHHHHHHHHHHHh-HhHHHH
Q 037374 396 DIKDLFDRNIVEKAVNDLMV-KRKEEF 421 (463)
Q Consensus 396 ~l~~~~~~~~l~~~i~~vl~-~~~~~~ 421 (463)
.. ..-+.++++++|.++++ | ++.
T Consensus 351 lv-~~~d~~~la~ai~~l~~~d--~~~ 374 (406)
T PRK15427 351 LV-PENDAQALAQRLAAFSQLD--TDE 374 (406)
T ss_pred Ee-CCCCHHHHHHHHHHHHhCC--HHH
Confidence 65 44589999999999998 7 553
No 115
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.57 E-value=0.00033 Score=67.92 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=82.6
Q ss_pred EEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChH---hhhcccCcc
Q 037374 274 YVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQE---EVLAHKAVG 350 (463)
Q Consensus 274 ~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~iL~~~~~~ 350 (463)
++..|+.. ..+....++++++..+.++++.-.+. ..+.+.+...+||.+.+++|+. .++..+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 45566665 33456777888888777765554321 1123333456899999999974 47888998
Q ss_pred eeee--ccCh-hhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 351 GFLI--HCGW-NSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 351 ~~I~--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
+|. .-|. .++.||+++|+|+|+.... .....+.+ -+.|..++ .-+.+.++++|.++++|
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~----~~~e~i~~-~~~G~~~~-~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKG----GALETVID-GVTGILFE-EQTVESLAAAVERFEKN 326 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCC----CCcceeeC-CCCEEEeC-CCCHHHHHHHHHHHHhC
Confidence 663 3333 4678999999999997543 23344533 35677663 45788899999999987
No 116
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.57 E-value=0.00049 Score=66.17 Aligned_cols=112 Identities=18% Similarity=0.316 Sum_probs=82.1
Q ss_pred hcCCceEEeccChHhh---hcccCcceeeecc-------Ch------hhHHHHHHhCCccccccccchhhhHHHHHHHhh
Q 037374 328 TKERGYIAGWVPQEEV---LAHKAVGGFLIHC-------GW------NSTLESIMAGMPMICWPSFADQQINSRFVDEVW 391 (463)
Q Consensus 328 ~~~nv~~~~~vpq~~i---L~~~~~~~~I~Hg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~ 391 (463)
..+||.+.+|+|+.++ |.. +++++...- .. +-+.+.+++|+|+|+. ++...+..+. +.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~-~~ 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIV-EN 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHH-hC
Confidence 3469999999998765 443 332222211 11 1267789999999985 5567778884 57
Q ss_pred hcceeccCccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Q 037374 392 KLGLDIKDLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKD 452 (463)
Q Consensus 392 G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~ 452 (463)
++|..++ +.+++.+++.++..++...+++|++++++++++ |-...+++++++..
T Consensus 279 ~~G~~v~---~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 279 GLGFVVD---SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred CceEEeC---CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 9999985 667899999887665557899999999999998 77777777777653
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.54 E-value=0.0023 Score=63.43 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCceEEeccChHh---hhcccCcceeeeccC----hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccC
Q 037374 330 ERGYIAGWVPQEE---VLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 330 ~nv~~~~~vpq~~---iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
+++.+.+|+++.+ ++..+++.+||...- ..++.||+++|+|+|+.. -......+ +..+.|..+...-+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeCCCCC
Confidence 4688889999764 555444333775543 568999999999998854 33455666 44347877755568
Q ss_pred HHHHHHHHHHHHhH
Q 037374 403 RNIVEKAVNDLMVK 416 (463)
Q Consensus 403 ~~~l~~~i~~vl~~ 416 (463)
.++++++|.++++|
T Consensus 364 ~~~la~~I~~ll~~ 377 (407)
T cd04946 364 PNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999986
No 118
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.36 E-value=0.19 Score=49.76 Aligned_cols=103 Identities=11% Similarity=-0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhCCCcE-EEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccC-h---HhhhcccCcceeeec----c
Q 037374 286 DQLIVFYYGLVNSKNGF-LWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVP-Q---EEVLAHKAVGGFLIH----C 356 (463)
Q Consensus 286 ~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q---~~iL~~~~~~~~I~H----g 356 (463)
+.+..+++|+...+.++ ++.++. +.. . ...++...++.. + .++++.+++ ||.- |
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~------g~~----~-----~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Eg 318 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGK------FSP----F-----TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDN 318 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcC------CCc----c-----cccceEEecCcCCHHHHHHHHHhCCE--EEECCcccc
Confidence 44567888888765443 344432 111 1 124666667763 3 346777888 7763 3
Q ss_pred ChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHH
Q 037374 357 GWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVND 412 (463)
Q Consensus 357 G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~ 412 (463)
-..++.||+++|+|+|+..... ....+ +. +.|..++ .-+.++|+++++.
T Consensus 319 fp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~-~~d~~~La~~~~~ 367 (405)
T PRK10125 319 YPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVS-EEEVLQLAQLSKP 367 (405)
T ss_pred CcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEEC-CCCHHHHHhccCH
Confidence 4568999999999999987653 33334 43 5677774 4477888876543
No 119
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.97 E-value=0.00096 Score=50.78 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=48.8
Q ss_pred hhhHhhhcCCCCeEEEEeccCcccC---CH--HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCce
Q 037374 259 SCIAWLDKQPKQSVIYVSFGSVAVM---SR--DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGY 333 (463)
Q Consensus 259 ~l~~~l~~~~~~~~v~vslGs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~ 333 (463)
.+..|+.+..+++.|+||+||.... .. ..+..++++++.++..++.++...+.. .+.. +|+||+
T Consensus 29 ~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~------~lg~-----lP~nVR 97 (97)
T PF06722_consen 29 VVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRA------ELGE-----LPDNVR 97 (97)
T ss_dssp EEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCG------GCCS------TTTEE
T ss_pred CCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHH------hhCC-----CCCCCC
Confidence 3446998888999999999999854 22 478899999999999999999764333 3333 677875
No 120
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.94 E-value=0.3 Score=47.24 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=61.0
Q ss_pred CCeEEEEeccCcc----cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcC----Cc-eEEecc-
Q 037374 269 KQSVIYVSFGSVA----VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKE----RG-YIAGWV- 338 (463)
Q Consensus 269 ~~~~v~vslGs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----nv-~~~~~v- 338 (463)
+++.|.+..|+.. ..+.+.+.++++.+...+.++++.-+.+ +........+..+. ++ -+.+-.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~-------e~~~~~~i~~~~~~~~~~~~~~l~g~~s 251 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK-------DHEAGNEILAALNTEQQAWCRNLAGETQ 251 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH-------hHHHHHHHHHhcccccccceeeccCCCC
Confidence 5678888888742 4677888899888876677766553211 11112222222221 12 233433
Q ss_pred -Ch-HhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 339 -PQ-EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 339 -pq-~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
.+ ..++.+|++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 252 L~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 252 LEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 34 448999998 8886 788999999999999874
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.92 E-value=0.0038 Score=51.04 Aligned_cols=80 Identities=25% Similarity=0.240 Sum_probs=49.9
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec---cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH---CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H---gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
.+|+++.+|++. .+++..+++....+. |-.+++.|++++|+|+|+.+.. ....+ +..+.|..+ .-+++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--ANDPE 123 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---TT-HH
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--CCCHH
Confidence 469999999974 458999999554432 2358999999999999997661 12222 224677666 45999
Q ss_pred HHHHHHHHHHhH
Q 037374 405 IVEKAVNDLMVK 416 (463)
Q Consensus 405 ~l~~~i~~vl~~ 416 (463)
++.++|.++++|
T Consensus 124 ~l~~~i~~l~~d 135 (135)
T PF13692_consen 124 ELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 122
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.90 E-value=0.013 Score=48.25 Aligned_cols=103 Identities=12% Similarity=0.176 Sum_probs=65.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHH
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFT 87 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~ 87 (463)
||++++.....| ...+++.|.++||+|++++.....+..... .++.++.++.. .....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~-----------~~i~~~~~~~~--------~k~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII-----------EGIKVIRLPSP--------RKSPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh-----------CCeEEEEecCC--------CCccH
Confidence 577777655555 557899999999999999995443333222 23777766422 11112
Q ss_pred HHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc---hHHHHHHHhC-CceEEEec
Q 037374 88 ELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS---HAIDVAREVG-ISIIYFCT 140 (463)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~---~~~~~A~~lg-iP~v~~~~ 140 (463)
..+. .. .+..++++. +||+|.+..... .+..++...+ +|++....
T Consensus 59 ~~~~-----~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYIK-----YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-----HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 2221 12 556777876 999998766543 3445677888 99987544
No 123
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.88 E-value=0.16 Score=49.12 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=62.3
Q ss_pred CCeEEEEeccCcc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhc-CC-ceEEecc--Ch-
Q 037374 269 KQSVIYVSFGSVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATK-ER-GYIAGWV--PQ- 340 (463)
Q Consensus 269 ~~~~v~vslGs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~v--pq- 340 (463)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+.+. .+........+... .+ +-+.+.. .+
T Consensus 182 ~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e-----~e~~~~~~i~~~~~~~~~~~l~g~~sL~el 256 (352)
T PRK10422 182 TQNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDK-----DDLACVNEIAQGCQTPPVTALAGKTTFPEL 256 (352)
T ss_pred CCCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCCh-----HHHHHHHHHHHhcCCCccccccCCCCHHHH
Confidence 4567878888764 46778888999888777788776653210 00011112221111 12 2234443 34
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
..++.+|++ ||+. -.|-++=|.+.|+|+|++
T Consensus 257 ~ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 257 GALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 448999998 9987 788999999999999874
No 124
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.82 E-value=0.017 Score=58.66 Aligned_cols=98 Identities=21% Similarity=0.190 Sum_probs=64.2
Q ss_pred cCCceEEeccChHhhhcccCcceeee---ccC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-C--cc
Q 037374 329 KERGYIAGWVPQEEVLAHKAVGGFLI---HCG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-D--LF 401 (463)
Q Consensus 329 ~~nv~~~~~vpq~~iL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~--~~ 401 (463)
.++|.+.++.+..+++..+++ +|. .-| ..++.||+++|+|+|+.-.. ..+...+ +.-..|..++ . .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCcccc
Confidence 456888899988899999999 775 233 45899999999999986432 1233444 3223455543 1 12
Q ss_pred C----HHHHHHHHHHHHhH-hHHHHHHHHHHHHHHH
Q 037374 402 D----RNIVEKAVNDLMVK-RKEEFMESADQMANLA 432 (463)
Q Consensus 402 ~----~~~l~~~i~~vl~~-~~~~~~~~a~~l~~~~ 432 (463)
+ .+.|+++|.+++++ ....+.+++.+.++.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 3 78899999999963 2234555555554443
No 125
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.74 E-value=0.063 Score=54.37 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=62.4
Q ss_pred cCCceEEeccChHhhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhh-----h-cceecc
Q 037374 329 KERGYIAGWVPQEEVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVW-----K-LGLDIK 398 (463)
Q Consensus 329 ~~nv~~~~~vpq~~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~-----G-~g~~l~ 398 (463)
.+||.+.+.....++++.+++ +|.- |-..++.||+++|+|+|+. |.......+ +.. | .|...
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEE-
Confidence 468888886667789999998 6644 3456899999999999985 334444444 321 2 56555
Q ss_pred CccCHHHHHHHHHHHHhHhHHHHHHHH
Q 037374 399 DLFDRNIVEKAVNDLMVKRKEEFMESA 425 (463)
Q Consensus 399 ~~~~~~~l~~~i~~vl~~~~~~~~~~a 425 (463)
...+.++++++|.++++| ++.+++.
T Consensus 425 ~~~d~~~la~ai~~ll~~--~~~~~~~ 449 (475)
T cd03813 425 PPADPEALARAILRLLKD--PELRRAM 449 (475)
T ss_pred CCCCHHHHHHHHHHHhcC--HHHHHHH
Confidence 456899999999999997 5544433
No 126
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.70 E-value=0.17 Score=48.66 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=63.8
Q ss_pred CeEEEEecc-Ccc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccC--h-Hh
Q 037374 270 QSVIYVSFG-SVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVP--Q-EE 342 (463)
Q Consensus 270 ~~~v~vslG-s~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vp--q-~~ 342 (463)
++.|.+..| +.. ..+.+.+.++++.+.+.+.++++..+++ +........+..+..+.+.+-.+ + ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~-------e~e~~~~i~~~~~~~~~l~~k~sL~e~~~ 247 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD-------EEERAEEIAKGLPNAVILAGKTSLEELAA 247 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH-------HHHHHHHHHHhcCCccccCCCCCHHHHHH
Confidence 678889999 442 5688899999999999887766665421 11222223222333333554443 4 44
Q ss_pred hhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 343 VLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 343 iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
++.++++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 248 li~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 248 LIAGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred HHhcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 7788987 7775 788999999999999884
No 127
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.67 E-value=0.18 Score=48.64 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=61.9
Q ss_pred CCeEEEEeccCcc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcC-Cce-EEecc--Ch-
Q 037374 269 KQSVIYVSFGSVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKE-RGY-IAGWV--PQ- 340 (463)
Q Consensus 269 ~~~~v~vslGs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-nv~-~~~~v--pq- 340 (463)
+++.|.+..|+.. ..+.+.+.++++.+...++++++..+.++ .+........+..+. ++. +.+-. .+
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~-----~e~~~~~~i~~~~~~~~~~~l~g~~sL~el 254 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDK-----DELAMVNEIAQGCQTPRVTSLAGKLTLPQL 254 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCH-----HHHHHHHHHHhhCCCCcccccCCCCCHHHH
Confidence 4567777777654 35777888888888776777766643210 000111222222221 222 33433 34
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
..++.++++ ||+. -.|.++=|.+.|+|+|++
T Consensus 255 ~ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 255 AALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 448999998 9998 899999999999999975
No 128
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.63 E-value=0.025 Score=55.12 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=58.5
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec--cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH--CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNI 405 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 405 (463)
++++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+ ..-+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv-~~~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLV-PKGDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEe-CCCcHHH
Confidence 467888888775 458999999334444 34568999999999999864321 133444 333566655 4568999
Q ss_pred HHHHHHHHHhH
Q 037374 406 VEKAVNDLMVK 416 (463)
Q Consensus 406 l~~~i~~vl~~ 416 (463)
++++|.++++|
T Consensus 335 la~~i~~ll~~ 345 (372)
T cd04949 335 LAEAIIELLND 345 (372)
T ss_pred HHHHHHHHHcC
Confidence 99999999987
No 129
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.60 E-value=0.075 Score=52.58 Aligned_cols=180 Identities=10% Similarity=0.101 Sum_probs=105.1
Q ss_pred HhhhcCCCCeEEEEeccCcccC------C-H---HHHHHHHHHHhhCCCcEEEEEcCCCCCC-CCCCCCCchhHHHHhc-
Q 037374 262 AWLDKQPKQSVIYVSFGSVAVM------S-R---DQLIVFYYGLVNSKNGFLWVIRPDLISG-KDGESQIPEEVVEATK- 329 (463)
Q Consensus 262 ~~l~~~~~~~~v~vslGs~~~~------~-~---~~~~~~~~al~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~- 329 (463)
.|+....++++|-|+....... . . +.+..+++.+.+.++++++.---..... ..+.......+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4554334556787776543311 1 1 2333455555556888765542110000 0000011122223332
Q ss_pred -CCceEE--eccCh--HhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhccee-cc-CccC
Q 037374 330 -ERGYIA--GWVPQ--EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLD-IK-DLFD 402 (463)
Q Consensus 330 -~nv~~~--~~vpq--~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~-l~-~~~~ 402 (463)
.++.++ ++-|. ..++++|++ +|..==+ ++.-|+..|||.+.+++ |. -....+ +.+|.... .+ ++++
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~-K~~~~~-~~lg~~~~~~~~~~l~ 378 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EH-KSAGIM-QQLGLPEMAIDIRHLL 378 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hH-HHHHHH-HHcCCccEEechhhCC
Confidence 334443 33343 368999998 8864322 46668899999999998 32 233333 34788766 45 7899
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 403 RNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 403 ~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
.++|.+.+.++++|+ ++++++.++-.+++++. +.+.+.++++.+.+
T Consensus 379 ~~~Li~~v~~~~~~r-~~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~~ 424 (426)
T PRK10017 379 DGSLQAMVADTLGQL-PALNARLAEAVSRERQT------GMQMVQSVLERIGE 424 (426)
T ss_pred HHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcc
Confidence 999999999999964 78888877777777774 25667777776543
No 130
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.53 E-value=0.5 Score=41.77 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=37.1
Q ss_pred cCCceEEeccCh----HhhhcccCcceeeeccC----hhhHHHHHHhCCccccccccc
Q 037374 329 KERGYIAGWVPQ----EEVLAHKAVGGFLIHCG----WNSTLESIMAGMPMICWPSFA 378 (463)
Q Consensus 329 ~~nv~~~~~vpq----~~iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~P~~~ 378 (463)
..|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 468999988732 225555888 888776 789999999999999987644
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.53 E-value=0.036 Score=52.85 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=57.3
Q ss_pred hcCCceEE---eccChH---hhhcccCcceeeec---cC-hhhHHHHHHhCCccccccc------cchh------hhHHH
Q 037374 328 TKERGYIA---GWVPQE---EVLAHKAVGGFLIH---CG-WNSTLESIMAGMPMICWPS------FADQ------QINSR 385 (463)
Q Consensus 328 ~~~nv~~~---~~vpq~---~iL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~------~~DQ------~~na~ 385 (463)
+++++.+. +++++. ++++.+++ ||.- =| ..++.||+++|+|+|+.-. ..|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45688887 455643 57888998 8863 24 4578999999999988522 2232 33333
Q ss_pred HHHH-hhhcceeccCccCHHHHHHHHHHHHh
Q 037374 386 FVDE-VWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 386 rv~~-~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
...+ ..|.|... ...++++++++|.+++.
T Consensus 277 ~~~~~~~g~g~~~-~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKI-HKFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeee-cCCCHHHHHHHHHHHHh
Confidence 3322 23666555 56899999999999965
No 132
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.20 E-value=0.081 Score=52.91 Aligned_cols=122 Identities=18% Similarity=0.310 Sum_probs=81.9
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHH---H---hcCCceEEeccChH
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVE---A---TKERGYIAGWVPQE 341 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~~~nv~~~~~vpq~ 341 (463)
++..+||++|--....+|+.+..-.+-++..+..++|....+.. |+ ..|.. . .|+.+.+.+-++-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---ge-----~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---GE-----QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---ch-----HHHHHHHHHhCCCccceeeccccchH
Confidence 45679999999888999999999999999999999999864321 11 11211 1 14566666655543
Q ss_pred hhhc-----ccCcceeeeccChhhHHHHHHhCCccccccccchhhhH-HHHHHHhhhcceeccC
Q 037374 342 EVLA-----HKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQIN-SRFVDEVWKLGLDIKD 399 (463)
Q Consensus 342 ~iL~-----~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~n-a~rv~~~~G~g~~l~~ 399 (463)
+..+ .-.++-+.+. |..|.++.|+.|||||.+|.-.--... +..+ -.+|+|..+.+
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hliak 889 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLIAK 889 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHHhh
Confidence 3333 2223334554 788999999999999999975433333 3444 35899986633
No 133
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.20 E-value=0.94 Score=47.08 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=52.6
Q ss_pred CceEEeccChH-hhhcccCcceeeec----cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHH
Q 037374 331 RGYIAGWVPQE-EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNI 405 (463)
Q Consensus 331 nv~~~~~vpq~-~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 405 (463)
++.+.++.++. ++++.+++ ||.= |=..++.||+++|+|+|+.-...... + .. |.+..+. -+.++
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~--~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY--KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--CCHHH
Confidence 46666777765 49999998 8763 33568999999999999976643221 3 22 3222221 46899
Q ss_pred HHHHHHHHHhH
Q 037374 406 VEKAVNDLMVK 416 (463)
Q Consensus 406 l~~~i~~vl~~ 416 (463)
+.++|.++|++
T Consensus 671 fAeAI~~LLsd 681 (794)
T PLN02501 671 FVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 134
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.19 E-value=0.61 Score=44.74 Aligned_cols=96 Identities=8% Similarity=0.079 Sum_probs=61.9
Q ss_pred CCeEEEEeccCcc----cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCce-EEec--cCh-
Q 037374 269 KQSVIYVSFGSVA----VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGY-IAGW--VPQ- 340 (463)
Q Consensus 269 ~~~~v~vslGs~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~--vpq- 340 (463)
+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++.-+.. +........+..++++. +.+- +.+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~-------e~~~~~~i~~~~~~~~~~l~g~~sL~el 245 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK-------DHPAGNEIEALLPGELRNLAGETSLDEA 245 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh-------hHHHHHHHHHhCCcccccCCCCCCHHHH
Confidence 4678888887742 4677888888888876677766554321 11112222222333332 3333 334
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
..+++++++ +|+. -.|-++=|.+.|+|+|++
T Consensus 246 ~ali~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 246 VDLIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 448999998 9887 788999999999999864
No 135
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.12 E-value=0.54 Score=44.78 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=77.1
Q ss_pred CCeEEEEeccCcc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEec--cCh-Hh
Q 037374 269 KQSVIYVSFGSVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGW--VPQ-EE 342 (463)
Q Consensus 269 ~~~~v~vslGs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vpq-~~ 342 (463)
+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+++ ++........+..+ +..+.+- +++ ..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~------~e~~~~~~i~~~~~-~~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND------AEKQRAERIAEALP-GAVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHhhCC-CCeecCCCCHHHHHH
Confidence 4556666666543 4677888889888876677776665421 11011122222222 3334443 344 45
Q ss_pred hhcccCcceeeeccChhhHHHHHHhCCccccc--cccchhh--h--HHHHHHHhhhcceeccCccCHHHHHHHHHHHH
Q 037374 343 VLAHKAVGGFLIHCGWNSTLESIMAGMPMICW--PSFADQQ--I--NSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLM 414 (463)
Q Consensus 343 iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~--P~~~DQ~--~--na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl 414 (463)
++++|++ +|+. -.|.++=|.+.|+|+|++ |....++ . +...+ . +..+ ..++.+++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~-~----~~~~-~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVAL-L----GESG-ANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEE-c----cCcc-CCCCHHHHHHHHHhhC
Confidence 8999998 8887 788999999999999875 2111111 0 01111 0 0011 6899999999998764
No 136
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.91 E-value=0.019 Score=47.93 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH
Q 037374 22 SMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL 101 (463)
Q Consensus 22 p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (463)
-+..|+++|.++||+|+++++......... ...++.+..++-..... .......+ ..+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~--------~~~ 63 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE----------EEDGVRVHRLPLPRRPW----PLRLLRFL--------RRL 63 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE----------EETTEEEEEE--S-SSS----GGGHCCHH--------HHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc----------ccCCceEEeccCCccch----hhhhHHHH--------HHH
Confidence 367899999999999999997544332111 11237776665221110 00000111 223
Q ss_pred HHHHHcCCCCceEEEEcCccc-hHHHHHH-HhCCceEEEec
Q 037374 102 KEMVTDSNSPVNYIIADGYMS-HAIDVAR-EVGISIIYFCT 140 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~-~~~~~A~-~lgiP~v~~~~ 140 (463)
..++.....+||+|.+..... ....++. ..++|++....
T Consensus 64 ~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 64 RRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 344411134999999776433 2233444 78999998644
No 137
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.89 E-value=0.29 Score=49.64 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=50.7
Q ss_pred cCCceEEeccCh-HhhhcccCcceeeec---cC-hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 329 KERGYIAGWVPQ-EEVLAHKAVGGFLIH---CG-WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 329 ~~nv~~~~~vpq-~~iL~~~~~~~~I~H---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
.++|.+.+|.++ ..+|..+++ ||.- -| .+++.||+++|+|+|+... ..+...+.+ -..|..++ .-+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp-~~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILD-DAQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEEC-CCCh
Confidence 468888888764 458999999 8853 44 5699999999999997654 345566633 35666664 2344
Q ss_pred HHHHHHH
Q 037374 404 NIVEKAV 410 (463)
Q Consensus 404 ~~l~~~i 410 (463)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 5555544
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.79 E-value=1.1 Score=41.61 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=37.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEecCcchhhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAG--IKITFLNTEYYYDRVI 50 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~~~~~~~~ 50 (463)
||+++-..+.|++.-+.++.++|+++. -+|++++.+.+.+-+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 689999999999999999999999974 8999999976555443
No 139
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.35 Score=48.33 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=87.4
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHH---H---hcCCceEEeccCh-
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVE---A---TKERGYIAGWVPQ- 340 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~---~~~nv~~~~~vpq- 340 (463)
++..+||+|++-.....++.+..=+.-++..+.-++|..++. +...+...+++ + .++..++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~------~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG------DDAEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC------CcHHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 467899999999999999998888888888999999999752 11123333322 1 1346666676664
Q ss_pred --HhhhcccCcceeee---ccChhhHHHHHHhCCccccccccchhhh--HHHHHHHhhhcceeccCccCHHHHHHHH
Q 037374 341 --EEVLAHKAVGGFLI---HCGWNSTLESIMAGMPMICWPSFADQQI--NSRFVDEVWKLGLDIKDLFDRNIVEKAV 410 (463)
Q Consensus 341 --~~iL~~~~~~~~I~---HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~g~~l~~~~~~~~l~~~i 410 (463)
.+-+..+|+ |+- -||..|..|+|..|||+|..+ .+||. |+.-+...+|+-..+ -.-.++=+..+|
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v-A~s~~dYV~~av 572 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV-ADSRADYVEKAV 572 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh-cCCHHHHHHHHH
Confidence 445556666 764 699999999999999998864 56654 333343334444333 223334455555
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.46 E-value=2 Score=40.95 Aligned_cols=132 Identities=12% Similarity=0.001 Sum_probs=75.8
Q ss_pred CeEEEEecc-Ccc--cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEec--cCh-Hhh
Q 037374 270 QSVIYVSFG-SVA--VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGW--VPQ-EEV 343 (463)
Q Consensus 270 ~~~v~vslG-s~~--~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--vpq-~~i 343 (463)
++.|.+..| |.. ..+.+.+.++++.+.+.+.++++..++. ++....+...+. ..++.+.+- +.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~------~e~~~~~~i~~~-~~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE------HEEQRAKRLAEG-FPYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH------HHHHHHHHHHcc-CCcceecCCCCHHHHHHH
Confidence 445544444 433 4677888899988877677766554321 111112222221 123444443 344 448
Q ss_pred hcccCcceeeeccChhhHHHHHHhCCccccc--cccchh----hhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHh
Q 037374 344 LAHKAVGGFLIHCGWNSTLESIMAGMPMICW--PSFADQ----QINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 344 L~~~~~~~~I~HgG~gs~~eal~~GvP~v~~--P~~~DQ----~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
+.+|++ ||+. ..|.++=|.+.|+|+|++ |..... ..|...+ . -....+ +.++.+++.+++.++|.
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~--~~~~cm-~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-R--SPGKSM-ADLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-c--CCCccc-ccCCHHHHHHHHHHHhh
Confidence 999998 9987 688999999999999885 221110 0111111 1 001111 58899999998887764
No 141
>PRK14098 glycogen synthase; Provisional
Probab=95.36 E-value=0.25 Score=50.16 Aligned_cols=83 Identities=7% Similarity=0.026 Sum_probs=55.7
Q ss_pred HhcCCceEEeccChH---hhhcccCcceeeecc---Ch-hhHHHHHHhCCcccccccc--chhhhHHHHHHHhhhcceec
Q 037374 327 ATKERGYIAGWVPQE---EVLAHKAVGGFLIHC---GW-NSTLESIMAGMPMICWPSF--ADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 327 ~~~~nv~~~~~vpq~---~iL~~~~~~~~I~Hg---G~-gs~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~~G~g~~l 397 (463)
+.++++.+.++++.. .+++.+++ |+.-+ |. .+..||+++|+|.|+.... .|...+ .. +.-+.|...
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEe
Confidence 456788888888864 58899999 77533 32 3778999999988876542 221110 01 112566666
Q ss_pred cCccCHHHHHHHHHHHHh
Q 037374 398 KDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~ 415 (463)
...+++.+.++|.++++
T Consensus 434 -~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 434 -HDYTPEALVAKLGEALA 450 (489)
T ss_pred -CCCCHHHHHHHHHHHHH
Confidence 45689999999998764
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.71 E-value=0.21 Score=43.67 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+..=-+. +---+..|+++|.+.||+|+++.|...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~ 38 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSE 38 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 67888774444 455678999999888899999999654
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.64 E-value=0.28 Score=36.90 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=49.7
Q ss_pred ccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhh-cceeccCccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 037374 355 HCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWK-LGLDIKDLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAK 433 (463)
Q Consensus 355 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~ 433 (463)
+|-..-+.|++++|+|+|.-+. ......+ +. | -++.. + +.+++.++|..+++| ++.+++..+-+...-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~--~-~~~el~~~i~~ll~~--~~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY--N-DPEELAEKIEYLLEN--PEERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE--C-CHHHHHHHHHHHHCC--HHHHHHHHHHHHHHH
Confidence 4556689999999999998755 3333333 22 4 33333 2 999999999999997 655444433332222
Q ss_pred HhhhcCCchHHHHHHHH
Q 037374 434 KSVNEGGSLYCNLDRLV 450 (463)
Q Consensus 434 ~~~~~gg~~~~~~~~~i 450 (463)
. +.=+....+++++
T Consensus 78 ~---~~~t~~~~~~~il 91 (92)
T PF13524_consen 78 L---KRHTWEHRAEQIL 91 (92)
T ss_pred H---HhCCHHHHHHHHH
Confidence 2 1334344445544
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.09 E-value=0.25 Score=41.81 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHh
Q 037374 16 GVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNL 95 (463)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (463)
..|=-.-+..|+++|+++||+|+++++... +.... . ........... ........+ .
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~-~~~~~-------------~-~~~~~~~~~~~----~~~~~~~~~---~- 67 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK-DPIEE-------------E-LVKIFVKIPYP----IRKRFLRSF---F- 67 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T-TS-SS-------------T-EEEE---TT-S----STSS--HHH---H-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC-ccchh-------------h-ccceeeeeecc----cccccchhH---H-
Confidence 334556688999999999999999987432 11100 0 00111100000 011111111 1
Q ss_pred hChHHHHHHHHcCCCCceEEEEcCccc-hHHHHHHHhCCceEEEecchh
Q 037374 96 AIPPLLKEMVTDSNSPVNYIIADGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 96 ~~~~~l~~~l~~~~~~pDlIi~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
....+..+++.. +||+|-+..... +....+.. ++|.+.......
T Consensus 68 -~~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 68 -FMRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp -HHHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred -HHHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 124556677776 999995444333 33333434 999999866555
No 145
>PHA01630 putative group 1 glycosyl transferase
Probab=93.93 E-value=1.6 Score=41.81 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=59.3
Q ss_pred eccChHh---hhcccCcceeee--c-cC-hhhHHHHHHhCCccccccccc--hhhh---HHHHHHHh-----------hh
Q 037374 336 GWVPQEE---VLAHKAVGGFLI--H-CG-WNSTLESIMAGMPMICWPSFA--DQQI---NSRFVDEV-----------WK 392 (463)
Q Consensus 336 ~~vpq~~---iL~~~~~~~~I~--H-gG-~gs~~eal~~GvP~v~~P~~~--DQ~~---na~rv~~~-----------~G 392 (463)
.++|+.+ +++.+++ +|. + .| ..++.||+++|+|+|+.-... |.-. |+--+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 4476544 7889998 763 2 32 558999999999999975432 3211 11111 10 13
Q ss_pred cceeccCccCHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHHhhhcCCchHHHH-HHHHHHH
Q 037374 393 LGLDIKDLFDRNIVEKAVNDLMVKR-KEEFMESADQMANLAKKSVNEGGSLYCNL-DRLVKDI 453 (463)
Q Consensus 393 ~g~~l~~~~~~~~l~~~i~~vl~~~-~~~~~~~a~~l~~~~~~~~~~gg~~~~~~-~~~i~~~ 453 (463)
+|..++ .+.+++.+++.++|.|. .++.+++.+.-+....+. .+++.+ +++.+.+
T Consensus 273 ~G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~-----fs~~~ia~k~~~l~ 328 (331)
T PHA01630 273 VGYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYREN-----YSYNAIAKMWEKIL 328 (331)
T ss_pred cccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHH
Confidence 454442 36788888888888741 124444444433333332 334444 4555444
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.75 E-value=0.37 Score=41.12 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=58.5
Q ss_pred ecCCCCCCHHHHHHHHHHH-HhC-CCeEEEEecCcch-h-hh---hhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCC
Q 037374 12 FPLPGVGHVNSMLKLAELL-SHA-GIKITFLNTEYYY-D-RV---IRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPD 84 (463)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L-~~r-Gh~V~~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~ 84 (463)
+..++.||..-++.|.+.+ .++ .++..+++..... . ++ ++... ....+..+|......+ .
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~---------~~~~~~~~~r~r~v~q----~ 69 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS---------KRHKILEIPRAREVGQ----S 69 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc---------ccceeeccceEEEech----h
Confidence 3447889999999999999 334 4555555543221 1 11 11111 0013334432211111 0
Q ss_pred CHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc--hHHHHHHHh------CCceEEE
Q 037374 85 KFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS--HAIDVAREV------GISIIYF 138 (463)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~--~~~~~A~~l------giP~v~~ 138 (463)
.....+..+.. ....+.-+.+. +||+||+..-.. ..+.+|..+ |.++|.+
T Consensus 70 ~~~~~~~~l~~-~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 70 YLTSIFTTLRA-FLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred hHhhHHHHHHH-HHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 11112222221 23334444444 999999887766 456688888 9998886
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.84 E-value=0.88 Score=38.68 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCceEEEEcCccchHHHHHHHh-CCceEEEec
Q 037374 101 LKEMVTDSNSPVNYIIADGYMSHAIDVAREV-GISIIYFCT 140 (463)
Q Consensus 101 l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~l-giP~v~~~~ 140 (463)
+.++-++ ...||+||.....-.+..+-+.+ ++|.+.+.-
T Consensus 57 ~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 57 ARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 3344333 56899999997666778888888 899888643
No 148
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.59 E-value=0.83 Score=45.83 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=69.3
Q ss_pred eccChHh---hhcccCcceeee---ccChh-hHHHHHHhCCc----cccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 336 GWVPQEE---VLAHKAVGGFLI---HCGWN-STLESIMAGMP----MICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 336 ~~vpq~~---iL~~~~~~~~I~---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
+.+|+.+ +++.+++ ++. +=|+| ++.||+++|+| +|+--.. ..+..+ +-|..+ ..-+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~----G~~~~l----~~gllV-nP~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFA----GAAQEL----NGALLV-NPYDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCC----CChHHh----CCcEEE-CCCCHH
Confidence 5667654 5788888 875 44655 78899999999 5544332 222223 235555 456899
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHH
Q 037374 405 IVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIK 454 (463)
Q Consensus 405 ~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~ 454 (463)
.++++|.++|+...++-+++.+++.+.+.+. +...-+++++++|.
T Consensus 411 ~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~-----~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 411 GMADAIARALTMPLEEREERHRAMMDKLRKN-----DVQRWREDFLSDLN 455 (456)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhh
Confidence 9999999999832256666677777776654 55677788887775
No 149
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.66 E-value=0.65 Score=38.04 Aligned_cols=48 Identities=19% Similarity=0.132 Sum_probs=41.0
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 4 QDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
|++.||++.+.++-+|-.-..-++..|.++|++|++++..--.+.+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 457899999999999999999999999999999999997544444444
No 150
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=90.35 E-value=2.4 Score=38.87 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=53.3
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCH
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKF 86 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~ 86 (463)
|||+++. +.|. ...|++.|.++||+|+..+............+ ..... ...+
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g----------~~~v~--~g~l----------- 52 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ----------ALTVH--TGAL----------- 52 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC----------CceEE--ECCC-----------
Confidence 4676664 3332 67899999999999998887554322211111 01110 0000
Q ss_pred HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc------hHHHHHHHhCCceEEE
Q 037374 87 TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS------HAIDVAREVGISIIYF 138 (463)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~------~~~~~A~~lgiP~v~~ 138 (463)
-...+.+++.+. ++|+||--.+-+ -+..+|+.+|||++.+
T Consensus 53 ----------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ----------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 112255666765 899776433332 2355789999999996
No 151
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.07 E-value=2.2 Score=35.57 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=61.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCC----CCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGL----PKDHPR 81 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~----~~~~~~ 81 (463)
+|||++.-.|+.|-..-++.|++.|.++|+.|-=+.++.-.+. -+..| |+.+.+..+- .....+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g-GkR~G-----------F~Ivdl~tg~~~~la~~~~~ 72 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG-GKRIG-----------FKIVDLATGEEGILARVGFS 72 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC-CeEee-----------eEEEEccCCceEEEEEcCCC
Confidence 6899999999999999999999999999999976666553321 11122 6666665321 111100
Q ss_pred --CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 82 --TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
......-..+.+.....+.++..++ ..|+||.|..-+
T Consensus 73 ~~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEIGp 111 (179)
T COG1618 73 RPRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEIGP 111 (179)
T ss_pred CcccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEecccc
Confidence 1111112233333334455555544 479999997554
No 152
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=90.03 E-value=1.1 Score=39.22 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH
Q 037374 22 SMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL 101 (463)
Q Consensus 22 p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (463)
-...+.+.+.++|-+|.|+++......+.+... . . .....+...|..+..+........+..+.......+
T Consensus 44 ~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a--~--~-----~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~ 114 (193)
T cd01425 44 LALNFIANIAAKGGKILFVGTKPQAQRAVKKFA--E--R-----TGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKL 114 (193)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH--H--H-----cCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556777788999999999766655544322 0 0 111112223333322221122222222221111223
Q ss_pred HHHHHcC---CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchh
Q 037374 102 KEMVTDS---NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 102 ~~~l~~~---~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
...+..+ ...||+|| .|+..- .+..=|..+|||+|.+.-+..
T Consensus 115 ~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 115 EKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 3333333 56899987 454333 667789999999999866553
No 153
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=89.10 E-value=7.9 Score=35.35 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
.+||||+..=-+. |---+.+|+++|.+.| +|+++.|...
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 42 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEP 42 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCC
Confidence 3689887763222 3345778999998888 7998888553
No 154
>PRK14099 glycogen synthase; Provisional
Probab=88.91 E-value=5.8 Score=40.27 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=50.5
Q ss_pred hcCCc-eEEeccChHh-hh-cccCcceeee---ccChh-hHHHHHHhCCcccccccc--chhhhHHHHHHHh--hhccee
Q 037374 328 TKERG-YIAGWVPQEE-VL-AHKAVGGFLI---HCGWN-STLESIMAGMPMICWPSF--ADQQINSRFVDEV--WKLGLD 396 (463)
Q Consensus 328 ~~~nv-~~~~~vpq~~-iL-~~~~~~~~I~---HgG~g-s~~eal~~GvP~v~~P~~--~DQ~~na~rv~~~--~G~g~~ 396 (463)
.+.++ .+.+|-.... ++ +.+++ ||. +=|.| +..||+++|+|.|+.... .|--.......+. -+.|..
T Consensus 348 ~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 348 YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 34555 4557744322 33 45787 775 34444 678999999877665321 1211111010010 145766
Q ss_pred ccCccCHHHHHHHHHH---HHhHhHHHHHH
Q 037374 397 IKDLFDRNIVEKAVND---LMVKRKEEFME 423 (463)
Q Consensus 397 l~~~~~~~~l~~~i~~---vl~~~~~~~~~ 423 (463)
. ..-+.++|.++|.+ +++| ++.++
T Consensus 426 ~-~~~d~~~La~ai~~a~~l~~d--~~~~~ 452 (485)
T PRK14099 426 F-SPVTADALAAALRKTAALFAD--PVAWR 452 (485)
T ss_pred e-CCCCHHHHHHHHHHHHHHhcC--HHHHH
Confidence 6 45689999999997 4555 44443
No 155
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.85 E-value=8.6 Score=35.07 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=24.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+..=-+. |---+..|+++|++ +|+|+++.|...
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQ 37 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCC
Confidence 57777663222 22337788999965 689999988553
No 156
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.73 E-value=1.3 Score=44.70 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=60.6
Q ss_pred EeccChHh---hhcccCcceeee---ccChh-hHHHHHHhCCc---cccccccchhhhHHHHHHHhhhcceeccCccCHH
Q 037374 335 AGWVPQEE---VLAHKAVGGFLI---HCGWN-STLESIMAGMP---MICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN 404 (463)
Q Consensus 335 ~~~vpq~~---iL~~~~~~~~I~---HgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 404 (463)
.+++++.+ +++.+++ ||. +-|+| ++.||+++|+| +|++.-.. ..+... .-|..+ ..-+.+
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~---G~~~~~----~~g~lv-~p~d~~ 415 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA---GAAEEL----SGALLV-NPYDID 415 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc---cchhhc----CCCEEE-CCCCHH
Confidence 36777655 6888888 774 44554 67899999999 33332111 111111 224444 456889
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 405 IVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 405 ~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
+++++|.++|++..++-+++.++..+.+++. +...-+++++.+|
T Consensus 416 ~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~-----~~~~w~~~~l~~l 459 (460)
T cd03788 416 EVADAIHRALTMPLEERRERHRKLREYVRTH-----DVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhh
Confidence 9999999999842123333333344444332 4456667766654
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=88.16 E-value=6 Score=37.42 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=66.8
Q ss_pred CCeEEEEeccCcc---cCCHHHHHH----HHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHH----hc--CCceEE
Q 037374 269 KQSVIYVSFGSVA---VMSRDQLIV----FYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEA----TK--ERGYIA 335 (463)
Q Consensus 269 ~~~~v~vslGs~~---~~~~~~~~~----~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~--~nv~~~ 335 (463)
.++.+-|-.|--. ..+.+.... +...++..+..+.++.+. ..|....+. .. ..+.+.
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSR----------RTp~~~~~~L~~~~~~~~~~~~~ 214 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSR----------RTPPEAEAALRELLKDNPGVYIW 214 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCC----------CCcHHHHHHHHHhhcCCCceEEe
Confidence 3555656556332 355554333 333333445566666543 344444432 22 233333
Q ss_pred e---ccChHhhhcccCcceeeeccCh-hhHHHHHHhCCccccccccc--hhhh-HHHHHHHhhhcceecc
Q 037374 336 G---WVPQEEVLAHKAVGGFLIHCGW-NSTLESIMAGMPMICWPSFA--DQQI-NSRFVDEVWKLGLDIK 398 (463)
Q Consensus 336 ~---~vpq~~iL~~~~~~~~I~HgG~-gs~~eal~~GvP~v~~P~~~--DQ~~-na~rv~~~~G~g~~l~ 398 (463)
+ .=|+..+|+.++. ++.-+.+ +=+.||+..|+|+.++|.-. +.+. ..+.+.+ .|+-..++
T Consensus 215 ~~~~~nPy~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 215 DGTGENPYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred cCCCCCcHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHH-CCCEEECC
Confidence 2 2368889999998 6666664 55789999999999999865 1111 2344433 57766665
No 158
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=88.13 E-value=2.6 Score=37.69 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=27.8
Q ss_pred CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchhHH
Q 037374 109 NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSACA 145 (463)
Q Consensus 109 ~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~~ 145 (463)
..-||+++ +|+..- -|..=|.++|||+|.+.-+-+.+
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 34499975 776665 67778999999999987665543
No 159
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=87.93 E-value=26 Score=33.50 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=35.9
Q ss_pred hcCCceEEeccChHh---hhcccCcceeeeccC----hhhHHHHHHhCCccccc
Q 037374 328 TKERGYIAGWVPQEE---VLAHKAVGGFLIHCG----WNSTLESIMAGMPMICW 374 (463)
Q Consensus 328 ~~~nv~~~~~vpq~~---iL~~~~~~~~I~HgG----~gs~~eal~~GvP~v~~ 374 (463)
+.+.+.+.+-+|+++ +|.+.++ |++-.= .-++.||..+|.|+|..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 467899999999754 7888898 887653 34678999999999864
No 160
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.69 E-value=1.7 Score=39.95 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=63.2
Q ss_pred CCceEE-eccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhh--HHHHHHHhhhcceeccCccCHHHH
Q 037374 330 ERGYIA-GWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQI--NSRFVDEVWKLGLDIKDLFDRNIV 406 (463)
Q Consensus 330 ~nv~~~-~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~g~~l~~~~~~~~l 406 (463)
+|-.+. .|-...++|.++++ .|--.|- .+-+++=-|+|+|.+|-..-|+. .|.|-.+-+|+...+-+ -.+..-
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a 369 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAA 369 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhH
Confidence 566654 77778889998888 7655553 23346778999999999988875 57776555677776642 222222
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHH
Q 037374 407 EKAVNDLMVKRKEEFMESADQMA 429 (463)
Q Consensus 407 ~~~i~~vl~~~~~~~~~~a~~l~ 429 (463)
..+..++|.| +.+..++++=+
T Consensus 370 ~~~~q~ll~d--p~r~~air~nG 390 (412)
T COG4370 370 AQAVQELLGD--PQRLTAIRHNG 390 (412)
T ss_pred HHHHHHHhcC--hHHHHHHHhcc
Confidence 3333448998 88887776443
No 161
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.50 E-value=0.94 Score=35.93 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=27.7
Q ss_pred CEEEEecCCCCC---CHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVG---HVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|||+|+.-|-.+ .-.-.++|+.+-.+|||+|.++.+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 689999877555 44678999999999999999998754
No 162
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=87.08 E-value=1.7 Score=38.21 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCEEEEecCC--CCCCHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 037374 6 PAHVVIFPLP--GVGHVNSMLKLAELLSHAGIKITFLNTEYYYD 47 (463)
Q Consensus 6 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 47 (463)
|.+|.+++.| +.|-..-.-.|+-.|+++|+.|.++=..--..
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLR 44 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLR 44 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCch
Confidence 4578888876 77899999999999999999999998754333
No 163
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=87.06 E-value=10 Score=34.29 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=59.1
Q ss_pred CEEEEecCCCCC-CHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVG-HVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 7 ~~il~~~~~~~G-H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
|||++.. --| |---+.+|+++|+ .+++|+++.|....--.... ......++...+... ..-....
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~s-------lTl~~Plr~~~~~~~----~~av~GT 66 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGASHS-------LTLHEPLRVRQVDNG----AYAVNGT 66 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccc-------cccccCceeeEeccc----eEEecCC
Confidence 4666654 234 4455778899998 99999999996542221111 111112333333320 0000001
Q ss_pred HHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcC----------ccc---hHHHHHHHhCCceEEEecc
Q 037374 86 FTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADG----------YMS---HAIDVAREVGISIIYFCTV 141 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~----------~~~---~~~~~A~~lgiP~v~~~~~ 141 (463)
.. -+ ..-.+..++++- .||+||+.. .+. +|++=|..+|||.|.+|..
T Consensus 67 Pa-DC------V~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 67 PA-DC------VILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred hH-HH------HHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 10 00 111244555553 699998643 222 4555678899999998654
No 164
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=86.16 E-value=2.3 Score=40.14 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchhH
Q 037374 109 NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 109 ~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
...||+|| .|...- .+..=|..+|||+|.+.-+.+.
T Consensus 150 ~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 150 GGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 34799986 565544 6777899999999998666553
No 165
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.08 E-value=15 Score=33.40 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=25.3
Q ss_pred CEEEEecCCCCC-CHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVG-HVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~G-H~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+.- --| |---+.+|+++|++.| +|+++.+...
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~ 37 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQ 37 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCC
Confidence 4677654 233 3344778999999888 8999988553
No 166
>PLN02939 transferase, transferring glycosyl groups
Probab=86.03 E-value=17 Score=39.62 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=54.6
Q ss_pred cCCceEEeccChH---hhhcccCcceeeec----cChhhHHHHHHhCCccccccccc--hhhhH--HHHHHHhhhcceec
Q 037374 329 KERGYIAGWVPQE---EVLAHKAVGGFLIH----CGWNSTLESIMAGMPMICWPSFA--DQQIN--SRFVDEVWKLGLDI 397 (463)
Q Consensus 329 ~~nv~~~~~vpq~---~iL~~~~~~~~I~H----gG~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv~~~~G~g~~l 397 (463)
.++|.+..+.+.. .+++.+++ ||.- +-..+..||+++|+|.|+..... |--.+ ...+.+.-+.|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888764 48999999 8853 22348999999999998865432 22111 11111112456555
Q ss_pred cCccCHHHHHHHHHHHHh
Q 037374 398 KDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 398 ~~~~~~~~l~~~i~~vl~ 415 (463)
...+++.|..+|.++++
T Consensus 914 -~~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 -LTPDEQGLNSALERAFN 930 (977)
T ss_pred -cCCCHHHHHHHHHHHHH
Confidence 34688999999988875
No 167
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=85.99 E-value=3.4 Score=42.24 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=55.2
Q ss_pred CCceEEeccC--h-HhhhcccCcceeeecc---ChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCH
Q 037374 330 ERGYIAGWVP--Q-EEVLAHKAVGGFLIHC---GWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDR 403 (463)
Q Consensus 330 ~nv~~~~~vp--q-~~iL~~~~~~~~I~Hg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 403 (463)
..|.+.++.+ + ...+..+++ +|.=+ |.++..||+.+|+|+| .......|. ...-|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~-d~~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVE-HNKNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeE-cCCCcEEe---CCH
Confidence 4677778887 4 347778887 88776 7789999999999999 333445553 33555555 478
Q ss_pred HHHHHHHHHHHhH
Q 037374 404 NIVEKAVNDLMVK 416 (463)
Q Consensus 404 ~~l~~~i~~vl~~ 416 (463)
.+|.++|..+|++
T Consensus 476 ~~l~~al~~~L~~ 488 (519)
T TIGR03713 476 SELLKALDYYLDN 488 (519)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 168
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.75 E-value=1.5 Score=34.89 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
||++.+.++-.|.....-++..|.++|++|++....--.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l 42 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEI 42 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 589999999999999999999999999999998764333333
No 169
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=85.41 E-value=3.6 Score=38.05 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=35.0
Q ss_pred Cce-EEeccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccc
Q 037374 331 RGY-IAGWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPS 376 (463)
Q Consensus 331 nv~-~~~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~ 376 (463)
++. +.+-++-.++|.+++. +||-.+ ++-.||+.+|+|++++..
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 444 3477888899999998 888854 488999999999999874
No 170
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.11 E-value=16 Score=36.44 Aligned_cols=126 Identities=8% Similarity=0.069 Sum_probs=78.0
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhCC-CcEEEEEcCCCCCCCCCCCCCchhHH--HHhcCCceEE-eccC-h-H
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSK-NGFLWVIRPDLISGKDGESQIPEEVV--EATKERGYIA-GWVP-Q-E 341 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~-~~vp-q-~ 341 (463)
....++++| +...+..+....++++ ..+-+.... ...+.+. ++. +|+.+. ++.+ + .
T Consensus 281 ~~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t----------e~s~kL~~L~~y-~nvvly~~~~~~~l~ 342 (438)
T TIGR02919 281 YRKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT----------EMSSKLMSLDKY-DNVKLYPNITTQKIQ 342 (438)
T ss_pred CcccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC----------cccHHHHHHHhc-CCcEEECCcChHHHH
Confidence 345667676 2455666666655554 444443321 1112221 223 677776 7777 3 5
Q ss_pred hhhcccCcceeeeccC--hhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHH
Q 037374 342 EVLAHKAVGGFLIHCG--WNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKE 419 (463)
Q Consensus 342 ~iL~~~~~~~~I~HgG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~ 419 (463)
+++..|++=+-|+||. ..++.||+.+|+|++..=..... ...+ .. |-.. ..-+.+++.++|.++|++ +
T Consensus 343 ~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i-~~---g~l~-~~~~~~~m~~~i~~lL~d--~ 412 (438)
T TIGR02919 343 ELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFI-AS---ENIF-EHNEVDQLISKLKDLLND--P 412 (438)
T ss_pred HHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccc-cC---Ccee-cCCCHHHHHHHHHHHhcC--H
Confidence 6999999978888876 66999999999999886433221 1222 21 3333 345789999999999997 6
Q ss_pred HH
Q 037374 420 EF 421 (463)
Q Consensus 420 ~~ 421 (463)
+-
T Consensus 413 ~~ 414 (438)
T TIGR02919 413 NQ 414 (438)
T ss_pred HH
Confidence 43
No 171
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=84.68 E-value=19 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=24.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+..=-+. |---+.+|+++|++ +|+|+++.|...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~ 37 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKE 37 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCC
Confidence 46777653332 33447788999964 689999988553
No 172
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=84.50 E-value=1.3 Score=35.87 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=34.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
|||++...|+.+=+. ...+.++|.++|++|.++.++...+-+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 588888888877666 99999999999999999999665444443
No 173
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.32 E-value=1.4 Score=42.83 Aligned_cols=108 Identities=11% Similarity=0.173 Sum_probs=66.7
Q ss_pred cCCceEE-eccChHhhhcccCcceeeeccChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc------Ccc
Q 037374 329 KERGYIA-GWVPQEEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK------DLF 401 (463)
Q Consensus 329 ~~nv~~~-~~vpq~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~------~~~ 401 (463)
.+++..+ +..+..++|..+++ +||=- +..+.|.+..++|++....-.|+.... .|.-.... .--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeC
Confidence 3577665 55568899999999 99987 558999999999999887776666322 23333221 145
Q ss_pred CHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHH
Q 037374 402 DRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLD 447 (463)
Q Consensus 402 ~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 447 (463)
+.++|.++|..++++. ..++++.++..+++-.. ++|.++.+.++
T Consensus 322 ~~~eL~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-~Dg~s~eri~~ 365 (369)
T PF04464_consen 322 NFEELIEAIENIIENP-DEYKEKREKFRDKFFKY-NDGNSSERIVN 365 (369)
T ss_dssp SHHHHHHHHTTHHHHH-HHTHHHHHHHHHHHSTT---S-HHHHHHH
T ss_pred CHHHHHHHHHhhhhCC-HHHHHHHHHHHHHhCCC-CCchHHHHHHH
Confidence 7899999999998851 45667777777777663 33444333333
No 174
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=83.96 E-value=4.5 Score=37.09 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.4
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhc
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRH 52 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~ 52 (463)
+++..-|+.|...-...+|..++++|++|.++..+.. ..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 3445577889999999999999999999999998664 455443
No 175
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=83.92 E-value=11 Score=33.11 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=23.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC--CeEEEEecC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAG--IKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~V~~~~~~ 43 (463)
||||+++..|.. +. +.+|.+.+.+.+ ++|.++.+.
T Consensus 1 m~ki~vl~sg~g-s~--~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNG-SN--LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCC-hh--HHHHHHHHHcCCCCcEEEEEEec
Confidence 589999997763 33 336666776654 778876554
No 176
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.54 E-value=6 Score=42.80 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=66.4
Q ss_pred ccCh---HhhhcccCcceeeec---cChh-hHHHHHHhCCc---cccccccchhhhHHHHHHHhhh-cceeccCccCHHH
Q 037374 337 WVPQ---EEVLAHKAVGGFLIH---CGWN-STLESIMAGMP---MICWPSFADQQINSRFVDEVWK-LGLDIKDLFDRNI 405 (463)
Q Consensus 337 ~vpq---~~iL~~~~~~~~I~H---gG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~~ 405 (463)
++|. .++++.+++ |+.- -|+| ++.|++++|+| +++++- --..+.. +| -|+.+ ...+.++
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe---~~G~~~~----l~~~allV-nP~D~~~ 432 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSE---FAGAGQS----LGAGALLV-NPWNITE 432 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeC---CcCchhh----hcCCeEEE-CCCCHHH
Confidence 4554 357888888 8754 4877 66799999999 444432 2222222 23 35555 5678999
Q ss_pred HHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 406 VEKAVNDLMV-KRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 406 l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
++++|.++|+ + .++-+++.+++.+..++. +..+-++.|++.+.+
T Consensus 433 lA~AI~~aL~m~-~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 433 VSSAIKEALNMS-DEERETRHRHNFQYVKTH-----SAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHHH
Confidence 9999999998 3 144555556666666554 445667777777655
No 177
>PRK06849 hypothetical protein; Provisional
Probab=82.89 E-value=6.5 Score=38.60 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 4 QDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+++|+|++.... ....+.+++.|.++||+|+++...+
T Consensus 2 ~~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 2 NTKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457888887533 2368999999999999999998754
No 178
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.48 E-value=27 Score=31.86 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=25.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+..=-+. |---+..|+++|.+. |+|+++.|...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~ 37 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRE 37 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCC
Confidence 46776653222 344477899999988 79999988553
No 179
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.05 E-value=25 Score=33.01 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCceEE-eccC---hHhhhcccCcceeeec--cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-CccC
Q 037374 330 ERGYIA-GWVP---QEEVLAHKAVGGFLIH--CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFD 402 (463)
Q Consensus 330 ~nv~~~-~~vp---q~~iL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~ 402 (463)
+++.+. +++| +.++|+.|+++.|+|+ =|.||+.-.++.|+|+++-- +=+.|.. +.+ .|+-+-.+ +.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCCccc
Confidence 688875 7776 6779999999888876 48999999999999998742 1122222 234 58777556 7888
Q ss_pred HHHHHHHHHHHH
Q 037374 403 RNIVEKAVNDLM 414 (463)
Q Consensus 403 ~~~l~~~i~~vl 414 (463)
...+.++=+++.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 888877655443
No 180
>PRK12342 hypothetical protein; Provisional
Probab=81.97 E-value=15 Score=33.65 Aligned_cols=40 Identities=5% Similarity=0.054 Sum_probs=30.5
Q ss_pred HHHHHHHcCCCCceEEEEcCccc-h-----HHHHHHHhCCceEEEecc
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMS-H-----AIDVAREVGISIIYFCTV 141 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~-~-----~~~~A~~lgiP~v~~~~~ 141 (463)
.+...++.. .||+|++...+. . +..+|+.+|+|++.+...
T Consensus 100 ~La~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 344566666 799999866555 3 788999999999997554
No 181
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=81.89 E-value=16 Score=36.88 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=71.0
Q ss_pred ceEEeccChHh---hhcccCcceeee---ccChhhH-HHHHHhCC----ccccccccchhhhHHHHHHHhhhcceeccCc
Q 037374 332 GYIAGWVPQEE---VLAHKAVGGFLI---HCGWNST-LESIMAGM----PMICWPSFADQQINSRFVDEVWKLGLDIKDL 400 (463)
Q Consensus 332 v~~~~~vpq~~---iL~~~~~~~~I~---HgG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 400 (463)
+++.+.+|+.+ +++.+++ ++. .-|+|-+ .|.++++. |+|+- .+.-|+ +.+.-++.+ ..
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILS-----efaGaa---~~l~~AllV-NP 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLS-----EFAGAA---VELKGALLT-NP 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEe-----ccccch---hhcCCCEEE-CC
Confidence 34558888765 6667777 654 4589855 49999877 33332 222222 123335555 57
Q ss_pred cCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 401 FDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 401 ~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
.+.++++++|.++|+....+=+++.+++.+.+++. +...=++.++..|..
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSP 482 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhh
Confidence 79999999999999842255667777777777765 556667888887765
No 182
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=81.88 E-value=6.4 Score=34.14 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=48.4
Q ss_pred CCCCCCHHHHHHHHHHHHhC--CCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHH
Q 037374 14 LPGVGHVNSMLKLAELLSHA--GIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELID 91 (463)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~ 91 (463)
-.+.|-++...+|+++|.++ |+.|.+-++........+... . +.+....+|- +
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~--~~v~~~~~P~----D------------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------P--DRVDVQYLPL----D------------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------G--GG-SEEE-------S-------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------C--CCeEEEEeCc----c-------------
Confidence 35678999999999999987 899988887444333322211 0 0122222221 0
Q ss_pred HHHhhChHHHHHHHHcCCCCceEEEEcCccchH--HHHHHHhCCceEEEec
Q 037374 92 SLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHA--IDVAREVGISIIYFCT 140 (463)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~--~~~A~~lgiP~v~~~~ 140 (463)
....++.+++.+ +||++|.-....|. ...|+..|||++.++.
T Consensus 83 -----~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -----FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 234456777888 99999866566654 4467888999999744
No 183
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.46 E-value=19 Score=31.29 Aligned_cols=105 Identities=11% Similarity=0.049 Sum_probs=61.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
.-.|.+++..+.|-....+.+|-..+.+|++|.++-.=.... . +| -.......+++.+......+.... ..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~---~-~G-E~~~l~~l~~v~~~~~g~~~~~~~----~~ 92 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW---S-TG-ERNLLEFGGGVEFHVMGTGFTWET----QD 92 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC---c-cC-HHHHHhcCCCcEEEECCCCCcccC----CC
Confidence 457999999999999999999999999999999986422110 0 00 001112223588877765432211 11
Q ss_pred HHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 86 FTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
........ ...-...++.+.+ .++|+||-|....
T Consensus 93 ~~e~~~~~-~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 93 RERDIAAA-REGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred cHHHHHHH-HHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11222111 1122333444443 5999999997554
No 184
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=80.77 E-value=27 Score=32.05 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=25.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||||+..=-+. |---+..|+++|...| +|+++.|...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCC
Confidence 46766653322 4455788999998887 7998888553
No 185
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.49 E-value=15 Score=34.92 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=32.9
Q ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 6 PAHVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
++||+|++ =||.|-..-.-++|-.|++.|.+|.++++++.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 36777777 46889988888899999999999999987654
No 186
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=79.83 E-value=16 Score=36.61 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=61.1
Q ss_pred EEEEecC-CCCCCHHHHHHHHHHHHhCCCeEEEEecCcch-h--hhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 8 HVVIFPL-PGVGHVNSMLKLAELLSHAGIKITFLNTEYYY-D--RVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 8 ~il~~~~-~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
++++... .+.|-..-...|++.|+++|++|..+=+.+.. + ......+ .+..+.+ .
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~~g--------------------~~~~~ld-~ 63 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAATG--------------------RPSRNLD-S 63 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHHhC--------------------CCcccCC-c
Confidence 4555543 45689999999999999999999988663211 0 0000011 0101000 0
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCc------------cchHHHHHHHhCCceEEEecch
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGY------------MSHAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~------------~~~~~~~A~~lgiP~v~~~~~~ 142 (463)
. ......+++.++.+..+.|++|++.. ......+|+.++.|++.+....
T Consensus 64 ~----------~~~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 64 W----------MMGEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred e----------eCCHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0 00123444444444447899997443 1246789999999999998644
No 187
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=79.64 E-value=23 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=30.2
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.+|++.++ -++.|-..-...||..|+++|++|.++=...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 36666555 3466788889999999999999999885543
No 188
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.52 E-value=52 Score=30.46 Aligned_cols=79 Identities=28% Similarity=0.364 Sum_probs=52.5
Q ss_pred CCceEEeccC---hHhhhcccCcceeeec---cChh-hHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccC
Q 037374 330 ERGYIAGWVP---QEEVLAHKAVGGFLIH---CGWN-STLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 330 ~nv~~~~~vp---q~~iL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
.++.+.++++ ...++..+++ ++.- .|.| ++.||+++|+|+|.... ......+ ...+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCCCC
Confidence 5788889988 2346777777 6665 3544 46999999999865533 3333344 3222365 332237
Q ss_pred HHHHHHHHHHHHhH
Q 037374 403 RNIVEKAVNDLMVK 416 (463)
Q Consensus 403 ~~~l~~~i~~vl~~ 416 (463)
.+.+.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999987
No 189
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.99 E-value=5.7 Score=31.40 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=36.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
.|+++.+.+..-|-....-|+..|.++||+|.++......+.+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 378999999999999999999999999999999966443344433
No 190
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=78.85 E-value=3.7 Score=29.88 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=31.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
-.++++..|...|...+..+|+.|.++|+.|...=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 468888888888999999999999999999986644
No 191
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=78.26 E-value=44 Score=31.89 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=60.6
Q ss_pred CCceEE-eccC---hHhhhcccCcceeeec--cChhhHHHHHHhCCccccccccchhhhHHHHHHHhhhcceecc-CccC
Q 037374 330 ERGYIA-GWVP---QEEVLAHKAVGGFLIH--CGWNSTLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIK-DLFD 402 (463)
Q Consensus 330 ~nv~~~-~~vp---q~~iL~~~~~~~~I~H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~ 402 (463)
+|+.+. +++| +.++|..|++..|.|. =|+|++.-.|+.|+|+++-- +=+ .-.-+.+ .|+-+... ++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np-~~~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNP-FWQDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CCh-HHHHHHh-CCCeEEeccccCC
Confidence 578764 7887 6779999999777664 59999999999999997642 112 2233435 48777666 8999
Q ss_pred HHHHHHHHHHHHh
Q 037374 403 RNIVEKAVNDLMV 415 (463)
Q Consensus 403 ~~~l~~~i~~vl~ 415 (463)
...|+++=+++..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887765
No 192
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=77.06 E-value=16 Score=31.54 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=23.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCe--EEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIK--ITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--V~~~~~ 42 (463)
|||+|+..++. .-+..+.++|.+++|+ +..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 68999976655 4466678899999997 554444
No 193
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=76.98 E-value=53 Score=30.15 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=22.1
Q ss_pred CCceEEEEc----------Cccc---hHHHHHHHhCCceEEEec
Q 037374 110 SPVNYIIAD----------GYMS---HAIDVAREVGISIIYFCT 140 (463)
Q Consensus 110 ~~pDlIi~D----------~~~~---~~~~~A~~lgiP~v~~~~ 140 (463)
.+||+||+. .+++ +|+.-|..+|||.+.+|.
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 389999863 3333 445566788999999875
No 194
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.54 E-value=45 Score=28.05 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=58.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEe---cC--cchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLN---TE--YYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT 82 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~ 82 (463)
-|.+++.++.|-....+++|-..+.+|++|.|+- .. .-+..+ ....+++.+...........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~----------l~~l~~v~~~~~g~~~~~~~--- 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKA----------LERLPNIEIHRMGRGFFWTT--- 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHH----------HHhCCCcEEEECCCCCccCC---
Confidence 4778888999999999999999999999999953 21 111111 12223577777665332111
Q ss_pred CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 83 PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
.......... ...-...++.+.. .++|+||-|-...
T Consensus 71 -~~~~~~~~~a-~~~~~~a~~~~~~--~~~dLlVLDEi~~ 106 (159)
T cd00561 71 -ENDEEDIAAA-AEGWAFAKEAIAS--GEYDLVILDEINY 106 (159)
T ss_pred -CChHHHHHHH-HHHHHHHHHHHhc--CCCCEEEEechHh
Confidence 1111212111 1123334455554 4999999997654
No 195
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=75.42 E-value=7.5 Score=39.83 Aligned_cols=73 Identities=12% Similarity=-0.063 Sum_probs=46.5
Q ss_pred ChHhhhcccCcceeee---ccC-hhhHHHHHHhCCcccccccc-chhhhHHHHHHHhh-hcceecc-C-----ccCHHHH
Q 037374 339 PQEEVLAHKAVGGFLI---HCG-WNSTLESIMAGMPMICWPSF-ADQQINSRFVDEVW-KLGLDIK-D-----LFDRNIV 406 (463)
Q Consensus 339 pq~~iL~~~~~~~~I~---HgG-~gs~~eal~~GvP~v~~P~~-~DQ~~na~rv~~~~-G~g~~l~-~-----~~~~~~l 406 (463)
++.++++.|++ +|. +=| .-++.||+++|+|+|+.... ..... ..+...- ..|+.+. . ..+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHH
Confidence 47788899999 665 445 44999999999999997653 22221 1221111 1455554 1 3355778
Q ss_pred HHHHHHHHh
Q 037374 407 EKAVNDLMV 415 (463)
Q Consensus 407 ~~~i~~vl~ 415 (463)
++++.++++
T Consensus 543 a~~m~~~~~ 551 (590)
T cd03793 543 TQYMYEFCQ 551 (590)
T ss_pred HHHHHHHhC
Confidence 888888875
No 196
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=74.85 E-value=3.1 Score=37.46 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=29.3
Q ss_pred CEEEEecCCCCCCHHH------------HHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNS------------MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~ 42 (463)
|||++.+.|+.=.+.| ..+||++|.++||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEEC
Confidence 5788888888777755 35889999999999999975
No 197
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=74.12 E-value=5.8 Score=35.98 Aligned_cols=99 Identities=10% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCCeEEEEeccCcc---cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCce-EEeccC--h-
Q 037374 268 PKQSVIYVSFGSVA---VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGY-IAGWVP--Q- 340 (463)
Q Consensus 268 ~~~~~v~vslGs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~vp--q- 340 (463)
.+++.|.+..|+.. ..+.+.+.++++.+.+.++++++..+... ......+...+..+.++. +.+-.+ +
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-----QEKEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-----HHHHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-----HHHHHHHHHHHhcccceEeecCCCCHHHH
Confidence 35677888888765 45778899999999888767655553210 000001111111122233 333333 3
Q ss_pred HhhhcccCcceeeeccChhhHHHHHHhCCccccc
Q 037374 341 EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 341 ~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
..++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 458889998 8886 678999999999999987
No 198
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=73.53 E-value=10 Score=40.79 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=67.7
Q ss_pred EEeccChHh---hhcccCcceeeec---cChh-hHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHH
Q 037374 334 IAGWVPQEE---VLAHKAVGGFLIH---CGWN-STLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIV 406 (463)
Q Consensus 334 ~~~~vpq~~---iL~~~~~~~~I~H---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l 406 (463)
+.+++++.+ +++.+++ |+.- -|+| ++.|++++|+|-..+|...+--.-+..+ .-|+.+ ..-+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv-~P~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLV-NPNDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEE-CCCCHHHH
Confidence 447788654 7778888 7764 3544 7889999987633333333222222222 225555 45689999
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 407 EKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 407 ~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
+++|.++|+...++.+++.+++.+.+++. +..+-++++++.+.+
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~~~-----~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLRRY-----DVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHH
Confidence 99999999831145555555555555443 446667777777766
No 199
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=73.43 E-value=5.7 Score=34.61 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=32.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
.+||++.-.|+.|=+.-...++++|.++||+|.++.++...
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 45888877776665555799999999999999999996543
No 200
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=73.27 E-value=58 Score=27.81 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=57.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec---C--cchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT---E--YYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~ 81 (463)
--|.+++..+.|-....+.+|-..+.+|++|.++-. . .-...+.+.. +++|.....++....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~-----------~~~~~~~g~g~~~~~-- 72 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH-----------GVEFQVMGTGFTWET-- 72 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc-----------CcEEEECCCCCeecC--
Confidence 457888889999999999999999999999977632 1 0111111111 377777765443211
Q ss_pred CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 82 TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
.+....... ....-...++.+.. .++|+||-|....
T Consensus 73 --~~~~~~~~~-~~~~~~~a~~~l~~--~~~DlvVLDEi~~ 108 (173)
T TIGR00708 73 --QNREADTAI-AKAAWQHAKEMLAD--PELDLVLLDELTY 108 (173)
T ss_pred --CCcHHHHHH-HHHHHHHHHHHHhc--CCCCEEEehhhHH
Confidence 111111111 11122334444444 4999999997553
No 201
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=72.82 E-value=26 Score=30.83 Aligned_cols=145 Identities=8% Similarity=0.012 Sum_probs=81.4
Q ss_pred CCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhc-CCceEEeccChHhhhc
Q 037374 267 QPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATK-ERGYIAGWVPQEEVLA 345 (463)
Q Consensus 267 ~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~iL~ 345 (463)
-..++++.|..|.++ ...+..|.+.+..+.+... .....+.+..+ ..+.......+..-+.
T Consensus 8 l~~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-----------~~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-----------ELTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred cCCCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-----------CCCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 346788888888665 3344455556766554432 12222222222 2355544444556677
Q ss_pred ccCcceeeeccChhhHHHHHH----hCCccccccccchhhhH-----HHHHHH-hhhcceecc--CccCHHHHHHHHHHH
Q 037374 346 HKAVGGFLIHCGWNSTLESIM----AGMPMICWPSFADQQIN-----SRFVDE-VWKLGLDIK--DLFDRNIVEKAVNDL 413 (463)
Q Consensus 346 ~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~n-----a~rv~~-~~G~g~~l~--~~~~~~~l~~~i~~v 413 (463)
.+++ +|.--+.-.+.+.++ .++++-+ .|.+.. -+.+.. .+-+|+.-. ...-+..|++.|.++
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHH
Confidence 8888 888888777777665 3444322 233222 222211 123333332 234446688888887
Q ss_pred HhHhHHHHHHHHHHHHHHHHHh
Q 037374 414 MVKRKEEFMESADQMANLAKKS 435 (463)
Q Consensus 414 l~~~~~~~~~~a~~l~~~~~~~ 435 (463)
+..+...+.+.+.++++.+++.
T Consensus 144 ~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 144 YDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHh
Confidence 7644467778888888888775
No 202
>PRK14098 glycogen synthase; Provisional
Probab=72.68 E-value=6.4 Score=40.01 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCCCEEEEecC--------CCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 4 QDPAHVVIFPL--------PGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 4 ~~~~~il~~~~--------~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.+||||++++. |+.|++ +-+|.++|+++||+|.++.|
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P 47 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMP 47 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcC
Confidence 45799999984 333343 56788999999999999998
No 203
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=72.68 E-value=10 Score=34.71 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchh
Q 037374 109 NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 109 ~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
...||+|| .|+..- .+..=|..+|||+|.+.-+-.
T Consensus 155 ~~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 155 GGLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred ccCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 35799986 565444 677789999999999866544
No 204
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=72.60 E-value=25 Score=29.50 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.6
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 037374 13 PLPGVGHVNSMLKLAELLSHAGIKITFL 40 (463)
Q Consensus 13 ~~~~~GH~~p~l~La~~L~~rGh~V~~~ 40 (463)
+.++.|-..=.+.|++.|.++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456788899999999999999999996
No 205
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=72.35 E-value=44 Score=30.86 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCEEEEecC--CCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPL--PGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
..|++.++. |+.|-..=...||..|++.|++|.++=.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 346655554 4667778889999999999999999854
No 206
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=71.86 E-value=26 Score=31.63 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=34.6
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHA-GIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~~~ 51 (463)
+++...|+.|-..-++.++..++.+ |+.|.|++.+...+.+.+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4566677889999999998888887 999999998766655544
No 207
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=71.29 E-value=41 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=30.5
Q ss_pred HHHHHHHHcCCCCceEEEEcCccc------hHHHHHHHhCCceEEEecc
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMS------HAIDVAREVGISIIYFCTV 141 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~------~~~~~A~~lgiP~v~~~~~ 141 (463)
..+...++.. .||+|++...+. -+..+|+.+|+|++.+...
T Consensus 102 ~~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3445666666 899999755443 5688999999999997554
No 208
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=70.54 E-value=57 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHh-CCCeEEEEecCcc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSH-AGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~ 45 (463)
++|++.++ -|+.|-..=...||..|++ .|++|.++=....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 46766665 4688888889999999996 6999999865443
No 209
>PRK14099 glycogen synthase; Provisional
Probab=70.39 E-value=7.4 Score=39.50 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCEEEEecC--------CCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPL--------PGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~--------~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+.|||++++. |+.|++ +-+|.++|+++||+|.++.|
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P 45 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVP 45 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeC
Confidence 5689999984 333344 55788999999999999998
No 210
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=70.34 E-value=13 Score=33.23 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=26.7
Q ss_pred CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchhH
Q 037374 109 NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 109 ~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
...||+|| .|+..- .+..=|..+|||+|.+.-+-..
T Consensus 153 ~~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~ 190 (225)
T TIGR01011 153 KKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCD 190 (225)
T ss_pred ccCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCC
Confidence 35799987 565544 6777899999999998665543
No 211
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=70.31 E-value=8.1 Score=33.10 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=25.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|||.++. +.|++- -.|+++...|||+||-++-.+
T Consensus 1 mKIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 6887775 444443 367899999999999998744
No 212
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=70.15 E-value=5.8 Score=34.23 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD 47 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 47 (463)
|+||++...|+.|=+. ...+.+.|+++|++|.++.++...+
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHH
Confidence 3588888877777665 7999999999999999999955433
No 213
>PRK06988 putative formyltransferase; Provisional
Probab=69.92 E-value=45 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||||+|+..+. -.+...++|.++||+|..+.+.+
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 58999996554 34566778888899998887743
No 214
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=69.15 E-value=4.1 Score=35.24 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=27.4
Q ss_pred CEEEEecCCCCCCHHH------------HHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNS------------MLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.||++.+.|+.=.+.| ...||+++..+|++|+++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4777777777766654 4689999999999999999853
No 215
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=69.11 E-value=35 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred EEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 037374 9 VVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLN 41 (463)
Q Consensus 9 il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~ 41 (463)
|++.+ ....|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 3457899999999999999999998875
No 216
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=68.72 E-value=8.3 Score=35.33 Aligned_cols=47 Identities=21% Similarity=0.421 Sum_probs=40.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRH 52 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~ 52 (463)
...++|+-.+|.|-..=..+||.+|.++|+.|+|++.+.....+..+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34689999999998888999999999889999999998876666553
No 217
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.60 E-value=40 Score=30.71 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
|++|+++..-+-| ..||+.|.++|++|++-+...... . +..+ .... .+.+ .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~-~~~~-----------~~v~-------~G~l---~- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-P-ADLP-----------GPVR-------VGGF---G- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-c-ccCC-----------ceEE-------ECCC---C-
Confidence 5678888755544 478999999999888877644211 0 0000 1110 0000 0
Q ss_pred HHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccch-------HHHHHHHhCCceEEE
Q 037374 86 FTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSH-------AIDVAREVGISIIYF 138 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~-------~~~~A~~lgiP~v~~ 138 (463)
..+.+.+++++- ++++|| |...+. +..+|+.+|||++.+
T Consensus 53 -----------~~~~l~~~l~~~--~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 -----------GAEGLAAYLREE--GIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred -----------CHHHHHHHHHHC--CCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 234455666665 888876 434443 355789999999996
No 218
>PRK11519 tyrosine kinase; Provisional
Probab=68.30 E-value=79 Score=33.98 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+.|+++++ .|+-|-..-...||..|++.|++|.++-.+.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45676666 4677888999999999999999999997643
No 219
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=68.15 E-value=11 Score=30.05 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=34.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||++.+.++-.|.....-++.-|..+|++|++....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 6899999999999999999999999999999999743
No 220
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=67.96 E-value=12 Score=32.78 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=38.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
..||++.+.++-.|-....-++..|.++|++|++++..--.+.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 4689999999999999999999999999999999886543444443
No 221
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=67.69 E-value=40 Score=30.53 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=55.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDK 85 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~ 85 (463)
+|+|+++. +.++ ...|++.|...++.+++.+...+.....+..+ .... .+
T Consensus 2 ~~~ilvlG--GT~D---ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~----------~~~~--------~G------- 51 (257)
T COG2099 2 MMRILLLG--GTSD---ARALAKKLAAAPVDIILSSLTGYGAKLAEQIG----------PVRV--------GG------- 51 (257)
T ss_pred CceEEEEe--ccHH---HHHHHHHhhccCccEEEEEcccccccchhccC----------Ceee--------cC-------
Confidence 46676664 3333 57899999999988888877554332222111 0000 00
Q ss_pred HHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchH-------HHHHHHhCCceEEE
Q 037374 86 FTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHA-------IDVAREVGISIIYF 138 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~-------~~~A~~lgiP~v~~ 138 (463)
....+.+.+++++. +.|++| |...+.+ ..+|+..|||++.+
T Consensus 52 ---------~l~~e~l~~~l~e~--~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 52 ---------FLGAEGLAAFLREE--GIDLLI-DATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ---------cCCHHHHHHHHHHc--CCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 01345677888886 999887 3333332 45789999999995
No 222
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=67.44 E-value=48 Score=33.27 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=61.9
Q ss_pred EEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHH
Q 037374 9 VVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFT 87 (463)
Q Consensus 9 il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~ 87 (463)
|++.. ....|-..-...|++.|+++|++|..+=+.+.. .+ ..+...-.+.+..+ ..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~----------~D-------~~~~~~~~g~~~~~---ld--- 58 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDY----------ID-------PMFHTQATGRPSRN---LD--- 58 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCC----------CC-------HHHHHHHhCCchhh---CC---
Confidence 44443 334688999999999999999999998652210 00 00000000011000 00
Q ss_pred HHHHHHHhhChHHHHHHHHcCCCCceEEEEcCc-------c-----chHHHHHHHhCCceEEEecchh
Q 037374 88 ELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGY-------M-----SHAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~-------~-----~~~~~~A~~lgiP~v~~~~~~~ 143 (463)
.+. .....+.+.+..+..+.|++|++.. . .....+|+.++.|++.+.....
T Consensus 59 ----~~~-~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 59 ----SFF-MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred ----ccc-CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 000 1234455555554457899996654 1 2367899999999999987653
No 223
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=67.36 E-value=1e+02 Score=28.26 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=48.4
Q ss_pred HHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCc-----eEE-----eccChHhhhcccCcceeeeccC
Q 037374 288 LIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERG-----YIA-----GWVPQEEVLAHKAVGGFLIHCG 357 (463)
Q Consensus 288 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv-----~~~-----~~vpq~~iL~~~~~~~~I~HgG 357 (463)
...+...+++-+..++.+++.. .|+.....+..|+ .+. ++=|+-++|+.++. +|.-..
T Consensus 186 ~~~l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaD 253 (329)
T COG3660 186 ASLLVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTAD 253 (329)
T ss_pred HHHHHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecc
Confidence 3345666666788888888642 3333332222222 221 44589999998887 666655
Q ss_pred -hhhHHHHHHhCCcccc
Q 037374 358 -WNSTLESIMAGMPMIC 373 (463)
Q Consensus 358 -~gs~~eal~~GvP~v~ 373 (463)
.+-..||++.|+|+.+
T Consensus 254 SinM~sEAasTgkPv~~ 270 (329)
T COG3660 254 SINMCSEAASTGKPVFI 270 (329)
T ss_pred hhhhhHHHhccCCCeEE
Confidence 5667899999999966
No 224
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=67.30 E-value=22 Score=35.39 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=27.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
++||||++-.+++-| +|++.|++-++-..+++.|.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 468999999998877 689999998865555555454
No 225
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=67.17 E-value=22 Score=34.85 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=60.1
Q ss_pred EEEe-cCCCCCCHHHHHHHHHHHHhCCCeEEEEec-CcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCH
Q 037374 9 VVIF-PLPGVGHVNSMLKLAELLSHAGIKITFLNT-EYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKF 86 (463)
Q Consensus 9 il~~-~~~~~GH~~p~l~La~~L~~rGh~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~ 86 (463)
|++. +..+.|-..-.+.|.++|++||++|-=+=. |.+.+ -.|+..-.+.+..+. +
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYID------------------P~~H~~atG~~srNL----D- 59 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYID------------------PGYHTAATGRPSRNL----D- 59 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccC------------------chhhhHhhCCccCCC----c-
Confidence 4443 355778999999999999999999964422 11111 112221111111111 1
Q ss_pred HHHHHHHHhhChHHHHHHHHcCCCCceEEE-------EcC-----ccchHHHHHHHhCCceEEEecchhHH
Q 037374 87 TELIDSLNLAIPPLLKEMVTDSNSPVNYII-------ADG-----YMSHAIDVAREVGISIIYFCTVSACA 145 (463)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi-------~D~-----~~~~~~~~A~~lgiP~v~~~~~~~~~ 145 (463)
.+. ...+.++.++..-....|+.| +|. -..+.+.+|+.+|+|+|.+.......
T Consensus 60 -----~~m-m~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s 124 (451)
T COG1797 60 -----SWM-MGEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLS 124 (451)
T ss_pred -----hhh-cCHHHHHHHHHHhcCCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchh
Confidence 111 123344444444334455544 333 13467999999999999997766544
No 226
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.05 E-value=9.3 Score=31.24 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.+.||++.+.+.-||-...--+++.|+..|.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 57899999999999999999999999999999998875
No 227
>CHL00175 minD septum-site determining protein; Validated
Probab=66.87 E-value=1e+02 Score=28.47 Aligned_cols=39 Identities=13% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|+||+.+. -|+.|-..=...||..|+++|++|.++=.+.
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 55666665 4677889999999999999999999986544
No 228
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=66.79 E-value=8.1 Score=33.42 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=34.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh-CCCeEEEEecCcchhhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSH-AGIKITFLNTEYYYDRVI 50 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~V~~~~~~~~~~~~~ 50 (463)
|+||++.-.|+.| .+=...|+++|.+ .||+|.++.++...+.+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 4688888888777 5558999999999 599999999965544443
No 229
>PRK10490 sensor protein KdpD; Provisional
Probab=66.17 E-value=9.4 Score=42.08 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
+.||.+=..|+.|-.+.|+.-|++|+++|+||++..-+..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCC
Confidence 6899999999999999999999999999999998877554
No 230
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=66.00 E-value=47 Score=33.05 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=52.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc----chhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY----YYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
|+.++..+.. .+.+++.|.+-|-+|+.+++.. +.+...+. + +.+...- ...
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~-------------~------~~~~~~v-~~~ 341 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRW-------------L------EMLGVEV-KYR 341 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHH-------------H------HhcCCCc-eec
Confidence 6666665555 7888899999999999987752 11111110 0 0000000 000
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEe
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFC 139 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~ 139 (463)
.++. ..+ +.++.. +||++|... .+..+|+++|||++.+.
T Consensus 342 ~dl~-----------~~~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLE-----------DDM-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHH-----------HHH-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 1111 111 334555 999999883 46678999999999963
No 231
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=65.93 E-value=24 Score=32.16 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=52.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCH
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKF 86 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~ 86 (463)
|||+++..-+-| ..|++.|.++|+ |++-+.-++...+.+... +..... .+.+ .
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~---------~~~~v~-------~G~l---g-- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPEL---------PGLEVR-------VGRL---G-- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhcccc---------CCceEE-------ECCC---C--
Confidence 578887654444 579999999999 665554343333221100 001110 0100 0
Q ss_pred HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccch-------HHHHHHHhCCceEEE
Q 037374 87 TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSH-------AIDVAREVGISIIYF 138 (463)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~-------~~~~A~~lgiP~v~~ 138 (463)
....+.+++++- ++|+|| |...+. +..+|+.+|||++.+
T Consensus 54 ----------~~~~l~~~l~~~--~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 ----------DEEGLAEFLREN--GIDAVI-DATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ----------CHHHHHHHHHhC--CCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 234455666765 888877 333332 355789999999996
No 232
>PRK05595 replicative DNA helicase; Provisional
Probab=65.90 E-value=27 Score=34.97 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=34.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLS-HAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~~ 51 (463)
+++...|+.|-..=.+.+|..++ ++|+.|.|++.+...+.+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 56677889999999999998776 56999999998765554444
No 233
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=65.82 E-value=17 Score=30.83 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=29.2
Q ss_pred HHhhChHHHHHHHHcCCCCceEEEEcCccchHH-HH----HHHh-CCceEEEec
Q 037374 93 LNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAI-DV----AREV-GISIIYFCT 140 (463)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~-~~----A~~l-giP~v~~~~ 140 (463)
+.....+.+.+++++. +||+||+........ .. ...+ ++|++.+.|
T Consensus 73 ~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 73 LSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3333455778888887 999999997765333 21 1223 577776644
No 234
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=65.53 E-value=16 Score=31.99 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
.-||++.+.++-.|-....-++..|..+|++|++++..--.+.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 4689999999999999999999999999999999997655455444
No 235
>PRK00784 cobyric acid synthase; Provisional
Probab=64.47 E-value=68 Score=32.62 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=27.2
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 9 VVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 9 il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+++.... ..|-..-...|++.|+++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 5555443 468999999999999999999987744
No 236
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.39 E-value=65 Score=28.36 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHh-cCCceEEeccChHhhhcc
Q 037374 268 PKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEAT-KERGYIAGWVPQEEVLAH 346 (463)
Q Consensus 268 ~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~vpq~~iL~~ 346 (463)
..++++.|..|... ..-+..|.+.+.++.+..+ .+.+.+.+-. ..++....--.+...|..
T Consensus 8 ~gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-----------~~~~~l~~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-----------ELESELTLLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-----------CCCHHHHHHHHcCCEEEEeCCCCHHHhCC
Confidence 35688888888655 2333455556777655542 1112222111 135655422223445777
Q ss_pred cCcceeeeccChhhHHH-----HHHhCCcccc--ccccchhhhHHHHHHH-hhhcceecc--CccCHHHHHHHHHHHHhH
Q 037374 347 KAVGGFLIHCGWNSTLE-----SIMAGMPMIC--WPSFADQQINSRFVDE-VWKLGLDIK--DLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 347 ~~~~~~I~HgG~gs~~e-----al~~GvP~v~--~P~~~DQ~~na~rv~~-~~G~g~~l~--~~~~~~~l~~~i~~vl~~ 416 (463)
+++ +|..-|...+.+ |-..|+|+-+ -|-..| +..-..+.. .+-+|+.-. ...-+..|++.|.+.+.+
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPP 146 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcch
Confidence 887 888888764444 3456777732 222222 122222211 122333322 234446788888888864
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 037374 417 RKEEFMESADQMANLAKKS 435 (463)
Q Consensus 417 ~~~~~~~~a~~l~~~~~~~ 435 (463)
....+.+.+.++++.+++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 147 SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 4466777777777777664
No 237
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=64.21 E-value=43 Score=28.13 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEEecCCCCCCHHH----HHHHHHHHHhC-CCeEEEEecCc---chhhhh---hccCCCCCccCCCCCeEEEEcCCCCCC
Q 037374 9 VVIFPLPGVGHVNS----MLKLAELLSHA-GIKITFLNTEY---YYDRVI---RHSSDGFSRYMQIPGLQLKTVTDGLPK 77 (463)
Q Consensus 9 il~~~~~~~GH~~p----~l~La~~L~~r-Gh~V~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~f~~i~~~~~~ 77 (463)
|+++.--..|.++| .+..|++|++. |.+|+.++... ..+.+. ...| . -+.+.+++....
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G--~--------d~v~~~~~~~~~ 71 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG--A--------DKVYHIDDPALA 71 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT--E--------SEEEEEE-GGGT
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC--C--------cEEEEecCcccc
Confidence 55555444566665 67889999975 77887777642 222211 1123 1 133333321100
Q ss_pred CCCCCCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc---hHHHHHHHhCCceEEEec
Q 037374 78 DHPRTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS---HAIDVAREVGISIIYFCT 140 (463)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~---~~~~~A~~lgiP~v~~~~ 140 (463)
. .+... ....+.+++++. +||+|+...... .+..+|..+|.|++.-..
T Consensus 72 ~-----~~~~~--------~a~~l~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 72 E-----YDPEA--------YADALAELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp T-----C-HHH--------HHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred c-----cCHHH--------HHHHHHHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0 01111 223445666666 999999886655 456789999999998544
No 238
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=64.09 E-value=58 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=24.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|||+|+..+.. .++..++|.++||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 68999865543 3667788888999998777643
No 239
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.77 E-value=10 Score=33.33 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=33.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVI 50 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 50 (463)
++||++.-.|+.+= .=...+.+.|.+.||+|.++.++...+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 46787776665554 578899999999999999999966544443
No 240
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=62.69 E-value=73 Score=24.93 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=55.3
Q ss_pred EecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHH
Q 037374 11 IFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELI 90 (463)
Q Consensus 11 ~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~ 90 (463)
|++.... +-.-++.+++.|.+.|++|. +++...+.+.+ .| +.+..+......+. .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~-~g-----------i~~~~v~~~~~~~~---~------- 58 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFLLE-NG-----------IPVTPVAWPSEEPQ---N------- 58 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHHHH-cC-----------CCceEeeeccCCCC---C-------
Confidence 4444433 44568899999999999883 45466666654 33 33222211000000 0
Q ss_pred HHHHhhChHHHHHHHHcCCCCceEEEEcCc---------cchHHHHHHHhCCceEE
Q 037374 91 DSLNLAIPPLLKEMVTDSNSPVNYIIADGY---------MSHAIDVAREVGISIIY 137 (463)
Q Consensus 91 ~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~---------~~~~~~~A~~lgiP~v~ 137 (463)
-.+.+.+++++- ++|+||.-+. .+...-.|-.+|||++.
T Consensus 59 ------~~~~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 59 ------DKPSLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ------CchhHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 014455666664 9999998432 23456688999999974
No 241
>PRK07236 hypothetical protein; Provisional
Probab=62.63 E-value=14 Score=36.12 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.+|.+++|+++-.| ..-+.+|..|+++|++|+++=-
T Consensus 1 ~~~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 1 MTHMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEec
Confidence 788889999999866 3458899999999999999964
No 242
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.52 E-value=9.5 Score=36.19 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=28.9
Q ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 4 QDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 4 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+++|||+++-.|+.|= .+|..|+++||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 3458999998887773 46788999999999998754
No 243
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=62.15 E-value=69 Score=26.61 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=69.4
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcce
Q 037374 272 VIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGG 351 (463)
Q Consensus 272 ~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~ 351 (463)
.|-|-+||.. +....+++...|++.+..+-..+.+ ....|+.+.+- +...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s--------aHR~p~~l~~~----------~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS--------AHRTPERLLEF----------VKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE----------TTTSHHHHHHH----------HHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe--------ccCCHHHHHHH----------HHHhcc-CCCEE--
Confidence 3556677655 6677888888888888665555432 11344433221 110000 23455
Q ss_pred eeeccChh----hHHHHHHhCCccccccccchhhh----HHHHHHHhhhcceecc---CccCHHHHHHHHHHHHhHhHHH
Q 037374 352 FLIHCGWN----STLESIMAGMPMICWPSFADQQI----NSRFVDEVWKLGLDIK---DLFDRNIVEKAVNDLMVKRKEE 420 (463)
Q Consensus 352 ~I~HgG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~g~~l~---~~~~~~~l~~~i~~vl~~~~~~ 420 (463)
||.=.|.. ++.-++ .-.|+|.+|....+.. ....++.=-|++...- +..++..++-.|..+ .| ++
T Consensus 59 iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d--~~ 134 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD--PE 134 (150)
T ss_dssp EEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T---HH
T ss_pred EEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC--HH
Confidence 88777754 333333 3789999998766443 2233322124544332 123333343333222 35 89
Q ss_pred HHHHHHHHHHHHHHh
Q 037374 421 FMESADQMANLAKKS 435 (463)
Q Consensus 421 ~~~~a~~l~~~~~~~ 435 (463)
++++.+..++++++.
T Consensus 135 l~~kl~~~~~~~~~~ 149 (150)
T PF00731_consen 135 LREKLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999888887764
No 244
>CHL00067 rps2 ribosomal protein S2
Probab=62.03 E-value=26 Score=31.54 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCceEEE-EcCccc-hHHHHHHHhCCceEEEecchhH
Q 037374 109 NSPVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 109 ~~~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
...||+|| .|+..- .+..=|..+|||+|.+.-+-..
T Consensus 159 ~~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 159 TKLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred ccCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 45799987 455444 6777899999999998766554
No 245
>PRK09739 hypothetical protein; Provisional
Probab=61.97 E-value=20 Score=31.33 Aligned_cols=39 Identities=5% Similarity=-0.023 Sum_probs=25.3
Q ss_pred CCCCEEEEecCCCCC--CHHH-HHHHHHHHHhCCCeEEEEec
Q 037374 4 QDPAHVVIFPLPGVG--HVNS-MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 4 ~~~~~il~~~~~~~G--H~~p-~l~La~~L~~rGh~V~~~~~ 42 (463)
|+||||+++...... ...- .-.+++.|.++||+|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 347899888644332 2222 44567778888999997754
No 246
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=61.95 E-value=24 Score=31.25 Aligned_cols=114 Identities=14% Similarity=0.152 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHH---HHHHHH---
Q 037374 21 NSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTE---LIDSLN--- 94 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~---~~~~~~--- 94 (463)
.-...+...++++|-+|.|+++......+.+... . .. +..+. ...|-.+..+....... .+..+.
T Consensus 43 ~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a--~--~~---~~~yi--~~rWi~G~LTN~~~i~~~i~~l~~l~~~~ 113 (211)
T PF00318_consen 43 RKALKFIKSIAKNGGKILFVGTKPQASKIVKKFA--K--RT---GSFYI--NERWIGGTLTNWKTIKKSIKKLKKLEKLF 113 (211)
T ss_dssp HHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHH--H--HH---TCEEE--ESS-STTTTTTTTHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHH--H--Hh---CCCcc--CceecCcccCcHHHHHHHHHHHHHHHHhh
Confidence 3455667777788999999999766554444322 0 00 02222 23343433222221111 121111
Q ss_pred h-------hChHHHHHHHHcC------CCCceEEEE-cCccc-hHHHHHHHhCCceEEEecchh
Q 037374 95 L-------AIPPLLKEMVTDS------NSPVNYIIA-DGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 95 ~-------~~~~~l~~~l~~~------~~~pDlIi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
. ........+-+.+ ...||+||+ |+..- .+..=|..+|||+|.+.-+..
T Consensus 114 ~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 114 KLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp TSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred hccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 0 0111222222222 456999875 44333 667778999999999866554
No 247
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.72 E-value=16 Score=32.70 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.++++++|++. |+.|++ -..|++.|.++||+|+.++.
T Consensus 1 ~~~~~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 1 MGSLMGRVALVT--GAARGL--GRAIALRLARAGADVVVHYR 38 (249)
T ss_pred CCCCCCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeC
Confidence 667766666653 455654 46788999999999977655
No 248
>PRK09620 hypothetical protein; Provisional
Probab=61.50 E-value=11 Score=33.97 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=29.2
Q ss_pred CCEEEEecCCCCCCHHH------------HHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNS------------MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~V~~~~~ 42 (463)
.+||++.+.|+.=.+.| -..||++|.++|++|+++..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 45788887777666544 35899999999999999976
No 249
>PRK13768 GTPase; Provisional
Probab=61.49 E-value=35 Score=31.18 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
++.+++...++.|-..=+..++..|.++|++|.++...+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 345666667788988889999999999999999997655
No 250
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=61.24 E-value=10 Score=32.78 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=32.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||++.-.|+.|=+.-.+.+.++|.+.|++|.++.++..
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 67887778888777778999999999999999998554
No 251
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=61.02 E-value=43 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=24.9
Q ss_pred HHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEe
Q 037374 103 EMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFC 139 (463)
Q Consensus 103 ~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~ 139 (463)
..++.. +||++|.. ..+..+|+++|||.+.+.
T Consensus 344 ~~~~~~--~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEY--RPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhc--CCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 334455 99999987 347789999999998863
No 252
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=60.92 E-value=16 Score=34.28 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=35.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
|||++..=|+.|-..-...||.+|+++|++|.++=..+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 689999999999999999999999999999999876553
No 253
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=60.40 E-value=1.1e+02 Score=29.91 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=33.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
+++...|+.|-..=++.++..++++|..|.|++.+...+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45566779999999999999999999999999886554444
No 254
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=60.25 E-value=77 Score=26.72 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=22.6
Q ss_pred ccCcceeeeccChh------hHHHHHHhCCcccccc
Q 037374 346 HKAVGGFLIHCGWN------STLESIMAGMPMICWP 375 (463)
Q Consensus 346 ~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P 375 (463)
...+ +++|+|-| .+.+|...++|+|++.
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3444 88888854 7889999999999996
No 255
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=60.14 E-value=18 Score=27.32 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHHH
Q 037374 23 MLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLLK 102 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (463)
++++|+.|.+.|+++ ++++.-.+.+.+ .| +....+-+...... ..+ ....+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-~G-----------i~~~~v~~~~~~~~---~~~-----------g~~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-HG-----------IEVTEVVNKIGEGE---SPD-----------GRVQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-TT-------------EEECCEEHSTG----GGT-----------HCHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-cC-----------CCceeeeeecccCc---cCC-----------chhHHH
Confidence 578999999999664 556566666664 45 55333322111110 000 001555
Q ss_pred HHHHcCCCCceEEEEcCccchH---------HHHHHHhCCceE
Q 037374 103 EMVTDSNSPVNYIIADGYMSHA---------IDVAREVGISII 136 (463)
Q Consensus 103 ~~l~~~~~~pDlIi~D~~~~~~---------~~~A~~lgiP~v 136 (463)
++++.- +.|+||........ ..+|..++||++
T Consensus 54 ~~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 667765 99999977554421 446788888876
No 256
>PRK07206 hypothetical protein; Provisional
Probab=59.85 E-value=47 Score=32.84 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=23.8
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.+++++-.... ...++++++++|++|+.+....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 45666664322 3568999999999999888743
No 257
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=59.52 E-value=22 Score=28.84 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=37.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
.+|++-+.++-+|-.----++..|.++|++|+.....--.+++.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 489999999999999999999999999999999987544444443
No 258
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=59.42 E-value=73 Score=31.09 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+++|+++- .|..|. .+|+.|+++||+|+++...
T Consensus 98 ~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 57899886 676664 6889999999999999763
No 259
>PRK06321 replicative DNA helicase; Provisional
Probab=58.78 E-value=68 Score=32.42 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=34.5
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLS-HAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~~ 51 (463)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+..
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 56777899999999999999887 45999999998765554444
No 260
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=57.92 E-value=1.1e+02 Score=32.65 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=28.3
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 8 HVVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.|++.+.. ..|-..=.+.|++.|.++|.+|-++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 45555444 468899999999999999999999854
No 261
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=57.72 E-value=1.3e+02 Score=26.10 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=26.2
Q ss_pred CEEEEecC---CC-CCCHHH-HHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPL---PG-VGHVNS-MLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~---~~-~GH~~p-~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
-||+++-. |+ +|=+-= .-.|+..|+++||+|++++....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~ 45 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDY 45 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCC
Confidence 47777752 22 444433 34677788889999999998554
No 262
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=57.64 E-value=1.3e+02 Score=26.13 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=57.8
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC----cch-hhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE----YYY-DRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
|.+++..+.|-....+.+|-.-.-+|.+|.++-.= .+. ....... ...+.|+..++++......
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~~-- 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQD-- 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCcC--
Confidence 77888889999988888877777778888877531 111 1111110 1248898888877655321
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
...-.... ...-...++++.+ .++|+||.|.+++
T Consensus 100 --~~~d~~aa-~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 100 --READIAAA-KAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred --cHHHHHHH-HHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11111111 1122233444444 5999999998765
No 263
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=56.93 E-value=19 Score=33.21 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=33.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|+|.+..=|+.|...-...||..|+++|++|.++=..+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 57888888899999999999999999999999886544
No 264
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=56.82 E-value=78 Score=23.40 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHHH
Q 037374 23 MLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLLK 102 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (463)
++.+++.|.+.|+++. + ++...+.+.+ .| +.....-.....+ .+.+.
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~-~G-----------i~~~~~~~ki~~~-------------------~~~i~ 48 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLRE-AG-----------LPVKTLHPKVHGG-------------------ILAIL 48 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHH-CC-----------CcceeccCCCCCC-------------------CHHHH
Confidence 4689999999999983 4 4355555554 34 3332111000000 01244
Q ss_pred HHHHcCCCCceEEEEcCcc---------chHHHHHHHhCCceE
Q 037374 103 EMVTDSNSPVNYIIADGYM---------SHAIDVAREVGISII 136 (463)
Q Consensus 103 ~~l~~~~~~pDlIi~D~~~---------~~~~~~A~~lgiP~v 136 (463)
++++.- ++|+||..... ..-.-+|...+||++
T Consensus 49 ~~i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 49 DLIKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHhcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 555554 99999975431 133557888899976
No 265
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=56.75 E-value=92 Score=24.22 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhCh
Q 037374 19 HVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIP 98 (463)
Q Consensus 19 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (463)
+=.-++.+|+.|.+.|+++. +++...+.+.+ .| +....+... +.+ ..
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~-~G-----------i~~~~v~~~-~~~------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLAD-AG-----------IPVRAVSKR-HED------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHH-cC-----------CceEEEEec-CCC------------------CC
Confidence 34557899999999999983 45465566655 34 443333211 010 23
Q ss_pred HHHHHHHHc-CCCCceEEEEcC--cc--------chHHHHHHHhCCceEEE
Q 037374 99 PLLKEMVTD-SNSPVNYIIADG--YM--------SHAIDVAREVGISIIYF 138 (463)
Q Consensus 99 ~~l~~~l~~-~~~~pDlIi~D~--~~--------~~~~~~A~~lgiP~v~~ 138 (463)
+.+.++++. - ++|+||.-. .. +..+-+|-.++||++.-
T Consensus 57 ~~i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 445566665 4 999999732 22 12345688889999874
No 266
>PRK10867 signal recognition particle protein; Provisional
Probab=56.61 E-value=69 Score=31.93 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=35.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEecCcchh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHA-GIKITFLNTEYYYD 47 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~ 47 (463)
+.-|+++..++.|-..-...||..|+++ |+.|.++..+.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 3446677777999999999999999999 99999999875544
No 267
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=56.45 E-value=27 Score=31.12 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=33.9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhc
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRH 52 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~ 52 (463)
+++...|+.|-..-++.++....++|+.|.|++.+...+.+.+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 45566678898888888888777789999999997766665543
No 268
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=56.03 E-value=20 Score=33.89 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=32.4
Q ss_pred CEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 7 AHVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 7 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
||++|+. -|+.|-..-..++|-.++++|++|.++++++..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4666666 568899999999999999999999999997653
No 269
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.85 E-value=1e+02 Score=33.22 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCEEEEecC--CCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPL--PGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
..|+++++. |+.|-..=...||..|+..|++|.++=.+.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~ 570 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 570 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 446666664 467788889999999999999999997643
No 270
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.81 E-value=97 Score=30.84 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=34.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
--|+++-.++.|-..=+..||..|+++|++|.+++.+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3467777789999999999999999999999999987654
No 271
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=55.80 E-value=17 Score=33.85 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRH 52 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~ 52 (463)
+++|+++-.|..|. .+|+.|+++||.|.++..+...+...++
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 57899988887775 4799999999999999987777666554
No 272
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=55.71 E-value=2.1e+02 Score=27.91 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=31.1
Q ss_pred ceEEeccCh---HhhhcccCcceeeeccChhhHHHHHHhCCcccc
Q 037374 332 GYIAGWVPQ---EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMIC 373 (463)
Q Consensus 332 v~~~~~vpq---~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 373 (463)
+.+.+|+|| +.+|-.|++ -+-. |==|..-|.-+|+|+|=
T Consensus 246 l~~lPF~~Q~~yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 246 LHVLPFVPQDDYDRLLWACDF--NFVR-GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred EEECCCCCHHHHHHHHHhCcc--ceEe-cchHHHHHHHhCCCceE
Confidence 444599997 559999998 5555 56799999999999974
No 273
>PRK13236 nitrogenase reductase; Reviewed
Probab=55.67 E-value=24 Score=33.12 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|.+.++-.|.|..=|+.|-..-.+.||..|+++|++|.++=...
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 56666533455555688999999999999999999999996644
No 274
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.59 E-value=29 Score=30.78 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+.-||++.+.++-.|-....=++..|..+|++|++++..--.+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 35699999999999999999999999999999999997543444433
No 275
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=55.55 E-value=13 Score=35.68 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||||.|+-.|..| ..+|..|.++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 5899999888777 457888999999999998644
No 276
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=55.12 E-value=6.8 Score=32.84 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=25.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||.++-.|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566666665554 78999999999999999864
No 277
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=55.07 E-value=21 Score=32.86 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=33.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|+|.+..=|+.|-..=+..||.+|+++|++|.++=-.+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~ 38 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDP 38 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 57888877899999999999999999999999985544
No 278
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.86 E-value=89 Score=33.85 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=31.6
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
..||+.++ .|+.|-..-...||..|++.|++|.++=.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34555555 56788999999999999999999999966443
No 279
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=54.58 E-value=26 Score=30.64 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
+.||.+-..|+.|-.+.|+.=|++|+++|.+|++..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 5789999999999999999999999999999999887544
No 280
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=54.48 E-value=56 Score=32.86 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=33.7
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
+++.--|+.|-..=++.++..+.++|+.|.|++.+...+.+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 45666779999999999999999999999999987655544
No 281
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.21 E-value=39 Score=32.06 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
+|||.++-.|+.| .+||..|+++||+|++....+.
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 4789999988887 5899999999999999987543
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.19 E-value=1.8e+02 Score=26.69 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=31.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+++.-.|+.|-..=++.++...+++|..|.|++.+.
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 456667799999999999998888999999999864
No 283
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=53.86 E-value=23 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
||+++++- .|++ -.+||+.|+..||+|++.+.
T Consensus 1 m~~~~i~G---tGni--G~alA~~~a~ag~eV~igs~ 32 (211)
T COG2085 1 MMIIAIIG---TGNI--GSALALRLAKAGHEVIIGSS 32 (211)
T ss_pred CcEEEEec---cChH--HHHHHHHHHhCCCeEEEecC
Confidence 45666654 4444 35789999999999999976
No 284
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=53.78 E-value=14 Score=37.01 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCCEEEEecCCCCCCHHHH------------HHHHHHHHhCCCeEEEEecCc
Q 037374 5 DPAHVVIFPLPGVGHVNSM------------LKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGh~V~~~~~~~ 44 (463)
+-.||++.+.|++=.+.|. .+||+++..+|++||+++.+-
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 3468999999999888774 589999999999999998743
No 285
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.74 E-value=8.8 Score=33.81 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHh
Q 037374 16 GVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNL 95 (463)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~ 95 (463)
+..|+...+.++..++.+|=.+.|+++....+.+.+... . ...-+.+...|..+-. .+....+..+..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA--~-------r~~gy~~~~~w~~G~l---TN~~~l~g~~~~ 157 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAA--R-------RAGGYSHNRKWLGGLL---TNARELFGALVR 157 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHH--H-------HhcCceeeeeecccee---ecchhhcccccc
Confidence 445667788889999999999999998655544443222 0 0111111222222210 011111111111
Q ss_pred --hChHHHHHHHHcCCCCceEEEE-cCccc-hHHHHHHHhCCceEEEecchhH
Q 037374 96 --AIPPLLKEMVTDSNSPVNYIIA-DGYMS-HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 96 --~~~~~l~~~l~~~~~~pDlIi~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
.+.+....++..+ .+|+||+ |.... .+..=|.+++||+|.+.-+-+.
T Consensus 158 ~~~~~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 158 KFLSLPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCN 208 (251)
T ss_pred cccCCCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCCC
Confidence 0122333344444 7899874 55555 7778899999999998666553
No 286
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=53.69 E-value=12 Score=31.49 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=24.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
||||.|+-.|..| .++|+.|.++||+|+.+-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 5799999887665 5789999999999988753
No 287
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=53.51 E-value=14 Score=31.77 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=30.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVI 50 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 50 (463)
||++.-.|+.|-+.. ..|.+.|+++|++|.++.++...+.+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555566665554 889999999999999999966544443
No 288
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.23 E-value=90 Score=31.21 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEe
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFC 139 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~ 139 (463)
.+.+.++.. +||++|... ....+|+++|||++.+.
T Consensus 368 e~~~~i~~~--~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 368 HLRSLLFTE--PVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHhhc--CCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 344556665 999999886 36788999999998753
No 289
>PRK11823 DNA repair protein RadA; Provisional
Probab=52.90 E-value=55 Score=32.86 Aligned_cols=41 Identities=29% Similarity=0.432 Sum_probs=34.1
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
+++.-.|+.|-..=++.++..++++|.+|.|++.+...+.+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45666779999999999999999899999999987655554
No 290
>PRK04328 hypothetical protein; Provisional
Probab=52.86 E-value=1.8e+02 Score=26.42 Aligned_cols=43 Identities=19% Similarity=0.033 Sum_probs=32.5
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+++.-.|+.|-..=.+.++.+-+++|+.+.|++.+...+.+.+
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 5666677889887777777666678999999998766655443
No 291
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=51.81 E-value=25 Score=34.62 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 3 KQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 3 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
.+++.||++.-.|+. ...=...+.++|.+.|++|.++.++...+.+
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 445678888877766 4446789999999999999999996544433
No 292
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.34 E-value=18 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=25.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|||+++-.|..| ..+|..|+++||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 578888777666 5678889999999999987
No 293
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=51.16 E-value=36 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEE
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
.+.+.++.. +||+||.+.. ...+|+++|+|++.+
T Consensus 362 el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 344566665 9999999963 467888899999875
No 294
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=50.89 E-value=18 Score=34.01 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
|||+++-.|+.| ..+|..|+++||+|+++..+...+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~ 38 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKAL 38 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHH
Confidence 589999877776 45788899999999999873333333
No 295
>PRK09165 replicative DNA helicase; Provisional
Probab=50.85 E-value=52 Score=33.51 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC---------------CCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHA---------------GIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~V~~~~~~~~~~~~~~ 51 (463)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5677788999999999998888753 889999998766655544
No 296
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=50.72 E-value=1.8e+02 Score=29.58 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=36.6
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+++.-.|+.|-..=.+.++.+.+++|..|.|++.+...+.+.+
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 5677778999999999999999999999999998877666555
No 297
>PLN02470 acetolactate synthase
Probab=50.61 E-value=78 Score=33.08 Aligned_cols=92 Identities=10% Similarity=0.063 Sum_probs=50.8
Q ss_pred eccCcccCCH--HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEec--------cChHhhhc
Q 037374 276 SFGSVAVMSR--DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGW--------VPQEEVLA 345 (463)
Q Consensus 276 slGs~~~~~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~--------vpq~~iL~ 345 (463)
+|||....+. ...+.+++.|++.+.+.++-+.+.... .+-+.+.+ .++++++.- .-.-.-..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~------~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM------EIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH------HHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 3555543222 335678888888888888887643211 12222211 123444321 11111111
Q ss_pred ccCcceeeeccChh------hHHHHHHhCCcccccc
Q 037374 346 HKAVGGFLIHCGWN------STLESIMAGMPMICWP 375 (463)
Q Consensus 346 ~~~~~~~I~HgG~g------s~~eal~~GvP~v~~P 375 (463)
+..++.+++|.|-| .+++|...++|||++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 22344488998854 7889999999999985
No 298
>PRK06756 flavodoxin; Provisional
Probab=50.20 E-value=32 Score=28.35 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=29.9
Q ss_pred CCEEEEecCCCCCCHHHH-HHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSM-LKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~-l~La~~L~~rGh~V~~~~~ 42 (463)
||||+++-...+||.--+ -.|++.|.++|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 478888888899999874 4678999889999987654
No 299
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=50.20 E-value=1.3e+02 Score=25.93 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhC
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHA 33 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~r 33 (463)
++++ -.|+.||..=|+.|-+.|.++
T Consensus 40 ~~lV-vlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLV-VLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEE-EEcCCCcHHHHHHHHHHHHhh
Confidence 4444 458999999999999999765
No 300
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=50.18 E-value=43 Score=34.57 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=50.6
Q ss_pred cChHhhhcccCcceeeecc-Ch-hhHHHHHHhCCcccccccc-chhhhH---HHHHHHhhhcceeccCccCHHHHHHHHH
Q 037374 338 VPQEEVLAHKAVGGFLIHC-GW-NSTLESIMAGMPMICWPSF-ADQQIN---SRFVDEVWKLGLDIKDLFDRNIVEKAVN 411 (463)
Q Consensus 338 vpq~~iL~~~~~~~~I~Hg-G~-gs~~eal~~GvP~v~~P~~-~DQ~~n---a~rv~~~~G~g~~l~~~~~~~~l~~~i~ 411 (463)
+|+.+++..|+++.|-+-= =| =|-+||+++|||.|..=+. +-++.+ .... + .|+-+.-+..-+.++..+.|.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~-~-~GV~VvdR~~~n~~e~v~~la 538 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPE-E-YGVYVVDRRDKNYDESVNQLA 538 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHG-G-GTEEEE-SSSS-HHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCc-C-CcEEEEeCCCCCHHHHHHHHH
Confidence 3788999999996665521 12 2899999999999987652 222222 1222 3 466655545566666666665
Q ss_pred HHHh-------HhHHHHHHHHHHHHHH
Q 037374 412 DLMV-------KRKEEFMESADQMANL 431 (463)
Q Consensus 412 ~vl~-------~~~~~~~~~a~~l~~~ 431 (463)
+.|. .+....|++++++++.
T Consensus 539 ~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 539 DFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5543 1224566777776654
No 301
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=50.09 E-value=1.4e+02 Score=24.46 Aligned_cols=101 Identities=7% Similarity=0.096 Sum_probs=62.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTP 83 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~ 83 (463)
+|+|++.. .-.+=.-++.+++.|.+. ||.+ ++++...+.+.+.+| +.+..+-.. +.
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~~G-----------i~v~~vi~~-~~------ 61 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEATG-----------LDVTRLLSG-PL------ 61 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhccC-----------CeeEEEEcC-CC------
Confidence 56777776 344567788999999999 9995 345476677766546 443333100 00
Q ss_pred CCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcC--ccc--------hHHHHHHHhCCceEEEecch
Q 037374 84 DKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADG--YMS--------HAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~--~~~--------~~~~~A~~lgiP~v~~~~~~ 142 (463)
...+.+.++++.- +.|+||.-. ... .-.-+|-.++||++....+.
T Consensus 62 ------------gg~~~i~~~I~~g--~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA 116 (142)
T PRK05234 62 ------------GGDQQIGALIAEG--KIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATA 116 (142)
T ss_pred ------------CCchhHHHHHHcC--ceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHH
Confidence 0224455666654 999999733 322 22446888999999854433
No 302
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=49.99 E-value=31 Score=30.16 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=29.8
Q ss_pred CCEEEEecCCCCCCHHHHHH-HHHHHHh-CCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLK-LAELLSH-AGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~V~~~~~ 42 (463)
||||+++-+..+||..-+.. +++.+.+ .|++|.++.-
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 46899999888999988765 5666766 8999988865
No 303
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=49.91 E-value=20 Score=28.91 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 16 GVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
..-.+--.+-++..|+++||+|++++++.. .++.+
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA-~kLl~ 43 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAA-LKLLE 43 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHH-HHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHH-HhHhh
Confidence 334555678899999999999999999554 44433
No 304
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=49.25 E-value=1.7e+02 Score=27.30 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=47.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--CCCeEEEEec-CcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSH--AGIKITFLNT-EYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~--rGh~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~ 81 (463)
++|||+++..+. |+-. .+|.++... -+++|.++.+ .+....+.+..+ +.+..++.. ..
T Consensus 88 ~~~ri~vl~Sg~-g~nl--~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----------Ip~~~~~~~--~~--- 148 (286)
T PRK13011 88 ARPKVLIMVSKF-DHCL--NDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHG-----------IPFHHFPIT--PD--- 148 (286)
T ss_pred cCceEEEEEcCC-cccH--HHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhC-----------CCEEEeCCC--cC---
Confidence 478999999885 4432 334444433 3688888765 334444444334 655555421 00
Q ss_pred CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc
Q 037374 82 TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS 122 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~ 122 (463)
+ .......+.+.++.. +||+||.-.+..
T Consensus 149 ---~--------~~~~~~~~~~~l~~~--~~Dlivlagy~~ 176 (286)
T PRK13011 149 ---T--------KPQQEAQVLDVVEES--GAELVVLARYMQ 176 (286)
T ss_pred ---c--------hhhhHHHHHHHHHHh--CcCEEEEeChhh
Confidence 0 000123345566776 999999775543
No 305
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=48.86 E-value=36 Score=28.54 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=27.8
Q ss_pred EEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEE
Q 037374 272 VIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVI 306 (463)
Q Consensus 272 ~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~ 306 (463)
.+|+++||........++..+.++.+.+.--++..
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999998888889999999988765334443
No 306
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=48.53 E-value=1.6e+02 Score=29.62 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEE
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
..+.++++.. +||++|... ....+|..+|||++.+
T Consensus 385 ~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3455666766 999999863 4567788999999875
No 307
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=48.51 E-value=1.5e+02 Score=24.35 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=31.8
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|.+...++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 677778899999999999999999999999988653
No 308
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.48 E-value=75 Score=27.11 Aligned_cols=111 Identities=12% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHH-HhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCC-------------CCCCC-----
Q 037374 18 GHVNSMLKLAELL-SHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTD-------------GLPKD----- 78 (463)
Q Consensus 18 GH~~p~l~La~~L-~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~-------------~~~~~----- 78 (463)
+.+.-.+..|+.| .+.|.+|.+.-. ...+.+.+... +....++- .....
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~~-----------iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~ 84 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHVS-----------IPVVEIPISGFDILRALAKAKKYGPKIAVVG 84 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-S-----------S-EEEE---HHHHHHHHHHCCCCTSEEEEEE
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhCC-----------CCEEEECCCHhHHHHHHHHHHhcCCcEEEEe
Confidence 5667788999999 789999988876 66667666543 44444431 00000
Q ss_pred CCCCCCCHHHHHHHHHhh--------ChHHHHHHHHcC-CCCceEEEEcCccchHHHHHHHhCCceEEEecchhH
Q 037374 79 HPRTPDKFTELIDSLNLA--------IPPLLKEMVTDS-NSPVNYIIADGYMSHAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~-~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
..........+. .+... ....+...++.+ ..+.|+||.+.. ...+|+.+|+|++.+.++...
T Consensus 85 ~~~~~~~~~~~~-~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 85 YPNIIPGLESIE-ELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp ESS-SCCHHHHH-HHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred cccccHHHHHHH-HHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 001122222222 22111 133444555544 458999999963 578899999999998665443
No 309
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=48.47 E-value=40 Score=31.98 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=28.7
Q ss_pred ecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 12 FPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 12 ~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
++.|+.|-+--.+.||++|.+||..|-+++-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 45789999999999999999999999999873
No 310
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=48.30 E-value=2e+02 Score=29.13 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 16 GVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
..|-..=+.+|++.|+++|++|..+=+
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 467888899999999999999998866
No 311
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.28 E-value=36 Score=28.28 Aligned_cols=44 Identities=7% Similarity=0.170 Sum_probs=31.4
Q ss_pred HHHHHHcC-----CCCceEEEEcCccc----------hHHHHHHHhCCceEEEecchhH
Q 037374 101 LKEMVTDS-----NSPVNYIIADGYMS----------HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 101 l~~~l~~~-----~~~pDlIi~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
++.++..+ +++||+|++..-+- -+..+|+.+|+|++-.+.....
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 35555555 88999999865432 4577899999999887655443
No 312
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=48.04 E-value=25 Score=34.89 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
++|||.|+-.|-.| +.+|..|+++||+|+.+-.
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 36899988666554 5789999999999998865
No 313
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=47.83 E-value=57 Score=31.54 Aligned_cols=99 Identities=8% Similarity=0.099 Sum_probs=53.9
Q ss_pred CeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCch-hHHH-HhcC-Cce-EEec--------
Q 037374 270 QSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPE-EVVE-ATKE-RGY-IAGW-------- 337 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-nv~-~~~~-------- 337 (463)
+.+++.+-||.....|. .++.+.+++.+++++|.......+ . ..++. ++.- .++. .+. ...|
T Consensus 2 ~~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e--~--~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIE--K--TIIEKENIPYYSISSGKLRRYFDLKNIKDPFL 75 (352)
T ss_pred CeEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccc--c--ccCcccCCcEEEEeccCcCCCchHHHHHHHHH
Confidence 35788888888865554 235566666789999997654222 0 01111 0000 0000 000 0000
Q ss_pred -c----ChHhhhcccCcceeeeccChhh---HHHHHHhCCccccc
Q 037374 338 -V----PQEEVLAHKAVGGFLIHCGWNS---TLESIMAGMPMICW 374 (463)
Q Consensus 338 -v----pq~~iL~~~~~~~~I~HgG~gs---~~eal~~GvP~v~~ 374 (463)
+ --..++..-+-+.+|++||.-| +..|...|+|+++.
T Consensus 76 ~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 76 VMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0 0112455333333999999997 88999999999763
No 314
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.76 E-value=2.6e+02 Score=26.85 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=76.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPD 84 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~ 84 (463)
++-++.++..|-.||--.+.-=|..|++.|.+|.+++.-.. .. .+.+.+.|+++++.+++- +-.+ ....
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s-~p--------~e~l~~hprI~ih~m~~l-~~~~-~~p~ 79 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVES-IP--------LEELLNHPRIRIHGMPNL-PFLQ-GGPR 79 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCC-CC--------hHHHhcCCceEEEeCCCC-cccC-CCch
Confidence 35688999999999999999999999999999999986321 01 111234567999998852 1111 0111
Q ss_pred CHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcC-ccchHHHHH----HHhCCceEEEecchhHH
Q 037374 85 KFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADG-YMSHAIDVA----REVGISIIYFCTVSACA 145 (463)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~ 145 (463)
.....+..++. ....+-.++-. .++|+|++-. -+.....++ ...|...++=|+...+.
T Consensus 80 ~~~l~lKvf~Q-fl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 VLFLPLKVFWQ-FLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhHHHHHHH-HHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 22223333333 11222233332 5899988653 222333343 44588888877776654
No 315
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.58 E-value=1.1e+02 Score=27.42 Aligned_cols=43 Identities=19% Similarity=0.029 Sum_probs=34.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+++...|+.|-..=.+.++.+-+++|..|.|++.+...+.+.+
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 5667788999888888877776688999999998776665544
No 316
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=47.47 E-value=37 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=30.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+|.|+.=|+.|-..-...||..|+++|++|.++-..+
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4455566788999999999999999999999996544
No 317
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=47.40 E-value=99 Score=31.42 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=25.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~ 42 (463)
||||++..|++.| +|+++|++. |++|..+..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6999998888877 577888776 899888854
No 318
>PRK12827 short chain dehydrogenase; Provisional
Probab=47.26 E-value=42 Score=30.07 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLN 41 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 41 (463)
|..++.++|++. |+.|.+- ..||++|.++||+|+++.
T Consensus 1 ~~~~~~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLDSRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcCCCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 555555665543 4445553 588999999999998865
No 319
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=47.18 E-value=1.9e+02 Score=27.35 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=23.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|||+|+..+. -.++..+.|.++||+|..+.+.
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~ 32 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQ 32 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEECC
Confidence 6899885443 3466778888889998877753
No 320
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.87 E-value=1.7e+02 Score=26.39 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=29.3
Q ss_pred hHHHHHHHHcCCCCceEEEEcCccc---hHHHHHHHhCCceEE
Q 037374 98 PPLLKEMVTDSNSPVNYIIADGYMS---HAIDVAREVGISIIY 137 (463)
Q Consensus 98 ~~~l~~~l~~~~~~pDlIi~D~~~~---~~~~~A~~lgiP~v~ 137 (463)
...++.+++.+ .+-++.+.|..++ -+..+|...|||++.
T Consensus 137 ~~aM~~~m~~L-k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEAL-KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH-HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 34456666665 5778999998887 346688999999887
No 321
>PLN02939 transferase, transferring glycosyl groups
Probab=46.74 E-value=39 Score=37.08 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCCEEEEecCC-----CCCCH-HHHHHHHHHHHhCCCeEEEEecC
Q 037374 5 DPAHVVIFPLP-----GVGHV-NSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 5 ~~~~il~~~~~-----~~GH~-~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+.|||+|++.- -.|-+ .-.-+|.++|+++||+|.++.|.
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 57999999832 12333 33557899999999999999983
No 322
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=46.34 E-value=2.6e+02 Score=30.99 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=61.5
Q ss_pred eccChH---hhhcccCcceeeec---cChhhH-HHHHHhCC---ccccccccchhhhHHHHHHHhhh-cceeccCccCHH
Q 037374 336 GWVPQE---EVLAHKAVGGFLIH---CGWNST-LESIMAGM---PMICWPSFADQQINSRFVDEVWK-LGLDIKDLFDRN 404 (463)
Q Consensus 336 ~~vpq~---~iL~~~~~~~~I~H---gG~gs~-~eal~~Gv---P~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~ 404 (463)
..+|+. +++..+++ ++.- -|+|.+ .|+++++. -+++++-+ -.-|. .+| -|+.+ ...+.+
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf---aGaa~----~L~~~AllV-NP~D~~ 515 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF---AGAAQ----SLGAGAILV-NPWNIT 515 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC---CchHH----HhCCceEEE-CCCCHH
Confidence 346654 46677777 6654 488854 59999965 22222222 11222 233 24444 567999
Q ss_pred HHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHh
Q 037374 405 IVEKAVNDLMV-KRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDIKM 455 (463)
Q Consensus 405 ~l~~~i~~vl~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~~~ 455 (463)
+++++|.++|+ +. ++-+++.+++.+.++.. +...-++.|+++|..
T Consensus 516 ~vA~AI~~AL~M~~-~Er~~r~~~~~~~V~~~-----d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 516 EVAASIAQALNMPE-EEREKRHRHNFMHVTTH-----TAQEWAETFVSELND 561 (934)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHHhhcccC-----CHHHHHHHHHHHHHH
Confidence 99999999988 31 44455555555555543 445556777777665
No 323
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.33 E-value=1.6e+02 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCC-CeEEEEecC-cchhhhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAG-IKITFLNTE-YYYDRVIR 51 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~V~~~~~~-~~~~~~~~ 51 (463)
||||+++-.|..|+ .+|+-|+++| ++|+++.-. ...+++..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh
Confidence 57899988776665 5789999999 999999864 33344444
No 324
>PRK07773 replicative DNA helicase; Validated
Probab=46.21 E-value=73 Score=35.20 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=35.1
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC-CCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHA-GIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r-Gh~V~~~~~~~~~~~~~~ 51 (463)
|++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 6777789999999999999988754 889999998766655544
No 325
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=46.19 E-value=49 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=33.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||++..-++.|-......|++.|+++|.+|.++-..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999988765
No 326
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.14 E-value=73 Score=31.46 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=35.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
+..|+++-.-+.|-..-+-.||..|.++|+.|.+++.+-+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 56678888889999999999999999999999999975443
No 327
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.02 E-value=23 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 15 PGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 15 ~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
-+.|--.-++.++--+...||+|++++++.-....
T Consensus 37 ~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ref 71 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREF 71 (235)
T ss_pred CCccHHHHHHHHHHHHHhCCceEEEEEechhHHHH
Confidence 36677888899999999999999999997655443
No 328
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=45.95 E-value=1.5e+02 Score=30.06 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEE
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIY 137 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~ 137 (463)
.+.+.++.. +||++|.. .....+|+++|||++-
T Consensus 384 e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 384 ELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 344555665 99999997 4567889999999984
No 329
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=45.93 E-value=24 Score=33.48 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=30.9
Q ss_pred CEEEEecCCCC---CCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 7 AHVVIFPLPGV---GHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 7 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
|||+|+.-|-. -+..-..+|.++..+|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 58888886532 2566789999999999999999998543
No 330
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=45.72 E-value=35 Score=29.27 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=34.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVI 50 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~ 50 (463)
..++++..++.|-..=..+++.++.++|+.|.|+..+...+.+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 46888888999988889999999999999999998866555554
No 331
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=45.61 E-value=42 Score=35.79 Aligned_cols=42 Identities=24% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD 47 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 47 (463)
+.||.|=.-|+.|-.+.|+.=|++|.+.|.||++..-+....
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEtHgR 63 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVETHGR 63 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEecCCCc
Confidence 589999999999999999999999999999999998765443
No 332
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.20 E-value=45 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=33.4
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
++..+.++..|.....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56777788899999999999999999999999764433333
No 333
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.15 E-value=1.7e+02 Score=28.96 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEE
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
.+.+.++.. +||++|... ....+|+++|+|++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s---~~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGG---KERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECC---cchhhHHhcCCCEEEc
Confidence 455666776 999999984 3467889999999854
No 334
>PRK12744 short chain dehydrogenase; Provisional
Probab=44.94 E-value=43 Score=30.38 Aligned_cols=39 Identities=18% Similarity=0.096 Sum_probs=26.6
Q ss_pred CCCCCC-CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDP-AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|+++.. -|.++++.++.| =-..+|+.|.++|++|.++..
T Consensus 1 ~~~~~l~~k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 1 MADHSLKGKVVLIAGGAKN---LGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCCCCCCCcEEEEECCCch---HHHHHHHHHHHCCCcEEEEec
Confidence 665542 256667655444 456789999999999777753
No 335
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=44.89 E-value=1.4e+02 Score=22.93 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhCh
Q 037374 19 HVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIP 98 (463)
Q Consensus 19 H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (463)
+-.-++++++.|.+.|+++. +++...+.+.+ .| +.+..+... . ...
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~-~g-----------i~~~~v~~~-~-------------------~~~ 56 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV--ATEGTAKYLQE-AG-----------IPVEVVNKV-S-------------------EGR 56 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE--EchHHHHHHHH-cC-----------CeEEEEeec-C-------------------CCc
Confidence 55678899999999999983 44465555555 34 443332211 0 023
Q ss_pred HHHHHHHHcCCCCceEEEEcCc-------cchHHHHHHHhCCceEE
Q 037374 99 PLLKEMVTDSNSPVNYIIADGY-------MSHAIDVAREVGISIIY 137 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~-------~~~~~~~A~~lgiP~v~ 137 (463)
+.+.+++++- ++|+||.... .+..+-.|-.+|||++.
T Consensus 57 ~~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 57 PNIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hhHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 4456666664 9999998432 23556689999999986
No 336
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=44.06 E-value=2.3e+02 Score=26.06 Aligned_cols=35 Identities=9% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+|||+++..++...-. .++++|.++|.+|.++...
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeec
Confidence 5799999998886443 5578898999999988763
No 337
>PRK13604 luxD acyl transferase; Provisional
Probab=44.01 E-value=50 Score=31.12 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLN 41 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 41 (463)
+.+++++++|..++-.-+..+|+.|.++|+.|.-+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 446788888888887779999999999999998773
No 338
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=43.42 E-value=2.8e+02 Score=27.74 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.4
Q ss_pred EEEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 8 HVVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 8 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
++++.... +.|-..-.+.|++.|.++|.+|..+=+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 45555544 568999999999999999999976654
No 339
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=42.82 E-value=2.1e+02 Score=24.33 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCceEEEEcCccc---hHHHHHHHhCCceEEEec
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMS---HAIDVAREVGISIIYFCT 140 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~---~~~~~A~~lgiP~v~~~~ 140 (463)
.+.+++++. +||+|++-.... .+..+|..+|.|++.=..
T Consensus 82 ~l~~~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 82 ALAALIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 344555665 899999876666 567789999999988433
No 340
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=42.81 E-value=43 Score=33.11 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=32.0
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|+|+.+. =||.|-..-.+.||..|+.+|++|.++=..+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 45665555 3788999999999999999999999986544
No 341
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.17 E-value=29 Score=29.81 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=28.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
||++.-.|+.| ..-...+.++|.++|++|.++.++..
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 56666666554 44556999999999999999999553
No 342
>PRK05636 replicative DNA helicase; Provisional
Probab=42.09 E-value=1.3e+02 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=32.8
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEecCcchhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLS-HAGIKITFLNTEYYYDRVI 50 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~~~~ 50 (463)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+...+.+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 56677889999998999998876 4589999999876554443
No 343
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=42.05 E-value=1.9e+02 Score=25.20 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=34.1
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc-chhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY-YYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~-~~~~~~~ 51 (463)
+.+.-.|+.|-..=++.++..+..+|..|.|+.++. ..+++.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHH
Confidence 456667799999999999999999999999999975 3344444
No 344
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=42.05 E-value=28 Score=33.07 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
||||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 4799999877666 45788899999999988764
No 345
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=41.91 E-value=35 Score=31.77 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=27.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+||.|+-.|..| .++|+.|.++||+|+++.-.+
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 478888888777 588999999999999998643
No 346
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.79 E-value=45 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEE
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFL 40 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~ 40 (463)
|+.|+--|+++++..+.|-+- -+||+++++.|+.|.-.
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG--~ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIG--YALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccCCCeEEEeecCCcchh--HHHHHHHHhCCeEEEEE
Confidence 566765566666655555442 37899999999998644
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.77 E-value=37 Score=29.87 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=63.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCH
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKF 86 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~ 86 (463)
+=|++..+|+.|-..-.-.||++|.+++|+|.-.+... .. + +.. ++. ....
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy-~~------~-----------i~~---DEs--------lpi~ 52 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY-LR------G-----------ILW---DES--------LPIL 52 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh-hh------h-----------eec---ccc--------cchH
Confidence 44666678999999999999999999999998876622 11 1 111 011 1111
Q ss_pred HHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccch------HHHHHHHhCCceEEEecchh
Q 037374 87 TELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSH------AIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~------~~~~A~~lgiP~v~~~~~~~ 143 (463)
.+.++.+.. ....+.+...+ +--+||+|...+. ....|..+..++.++....+
T Consensus 53 ke~yres~~--ks~~rlldSal--kn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~p 111 (261)
T COG4088 53 KEVYRESFL--KSVERLLDSAL--KNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTP 111 (261)
T ss_pred HHHHHHHHH--HHHHHHHHHHh--cceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccC
Confidence 233333332 22233333333 4558898887762 24467888899888755444
No 348
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=41.66 E-value=7.2 Score=20.87 Aligned_cols=17 Identities=24% Similarity=0.603 Sum_probs=13.8
Q ss_pred ChhhHHHHHHhCCcccc
Q 037374 357 GWNSTLESIMAGMPMIC 373 (463)
Q Consensus 357 G~gs~~eal~~GvP~v~ 373 (463)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 78899999999998865
No 349
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.60 E-value=2.2e+02 Score=24.15 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCeEEEEecCcch-hhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH
Q 037374 23 MLKLAELLSHAGIKITFLNTEYYY-DRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL 101 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (463)
+..|.+...++|.+|.+++..+.. +++.+... ...|++++....+..-. ....+.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~------~~yP~l~ivg~~~g~f~-----------------~~~~~~i 93 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR------RRYPGLRIVGYHHGYFD-----------------EEEEEAI 93 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH------HHCCCeEEEEecCCCCC-----------------hhhHHHH
Confidence 345566666789999999975432 22222211 33456777654433210 1122334
Q ss_pred HHHHHcCCCCceEEEEcCccc----hHHHHHHHhCCceEEEecchhHH
Q 037374 102 KEMVTDSNSPVNYIIADGYMS----HAIDVAREVGISIIYFCTVSACA 145 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~ 145 (463)
.+.++.. +||+|++-.-++ |.....+.++.+ +.+....++.
T Consensus 94 ~~~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d 138 (172)
T PF03808_consen 94 INRINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFD 138 (172)
T ss_pred HHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhh
Confidence 4455655 999999998887 566666777777 4544444443
No 350
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=41.56 E-value=23 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecC
Q 037374 21 NSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
.-+-.|+++|+++||+|++++|.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 34568999999999999999983
No 351
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=41.28 E-value=1.5e+02 Score=29.14 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=24.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
||||++-.|++-| +||+.|++-+.--.+++.+.
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apg 33 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPG 33 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCC
Confidence 6999999999999 58999988664444444433
No 352
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=41.21 E-value=1.2e+02 Score=26.16 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=46.2
Q ss_pred ccccccchhhhHHHHHHHhhhcceecc----C---------ccCHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 037374 372 ICWPSFADQQINSRFVDEVWKLGLDIK----D---------LFDRNIVE----KAVNDLMVKRKEEFMESADQMANLAKK 434 (463)
Q Consensus 372 v~~P~~~DQ~~na~rv~~~~G~g~~l~----~---------~~~~~~l~----~~i~~vl~~~~~~~~~~a~~l~~~~~~ 434 (463)
-.+|...||...-..+-|.+.+|+.+. | .++.+.++ +.|.++|+| +.+-+|-.++.+.+.+
T Consensus 21 WG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d--~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 21 WGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQD--AGIIRHRGKIQAIIGN 98 (187)
T ss_pred CCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC--chhHHhHHHHHHHHHH
Confidence 345667777777655556677777664 1 67777775 778888888 7776666666554443
Q ss_pred ------hhhcCCchHHHH
Q 037374 435 ------SVNEGGSLYCNL 446 (463)
Q Consensus 435 ------~~~~gg~~~~~~ 446 (463)
..+|+|+-.+++
T Consensus 99 A~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 99 ARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHHHHHhcCCHHHHH
Confidence 233466655555
No 353
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.68 E-value=36 Score=32.50 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
.+|||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 36899999877776 56888999999999999874
No 354
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=40.66 E-value=1.6e+02 Score=29.53 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=25.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|.|||++-.+.. .+.+++++++.|++|+.+.+..
T Consensus 2 ~k~iLi~g~g~~-----a~~i~~aa~~~G~~vv~~~~~~ 35 (451)
T PRK08591 2 FDKILIANRGEI-----ALRIIRACKELGIKTVAVHSTA 35 (451)
T ss_pred cceEEEECCCHH-----HHHHHHHHHHcCCeEEEEcChh
Confidence 568888843332 5888899999999999987644
No 355
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=40.51 E-value=44 Score=28.54 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=26.8
Q ss_pred EEEecCCCCCCHHH-HHHHHHHHHh-CCCeEEEEecCcch
Q 037374 9 VVIFPLPGVGHVNS-MLKLAELLSH-AGIKITFLNTEYYY 46 (463)
Q Consensus 9 il~~~~~~~GH~~p-~l~La~~L~~-rGh~V~~~~~~~~~ 46 (463)
|+..-.|+ ||... ...+.++|++ +||+|.++.++...
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 33333343 78766 8899999985 59999999995544
No 356
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=40.50 E-value=2.3e+02 Score=26.42 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEecCc-chhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNTEY-YYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~ 81 (463)
+++||+++..|..+.+. +|.+...+. +++|..+.+.. ....+.+..+ +.+..++... ..
T Consensus 88 ~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----------Ip~~~~~~~~-~~--- 149 (286)
T PRK06027 88 ERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVERFG-----------IPFHHVPVTK-ET--- 149 (286)
T ss_pred cCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhC-----------CCEEEeccCc-cc---
Confidence 57899999988844444 334444332 57888776643 3334444334 6555554320 00
Q ss_pred CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCcc
Q 037374 82 TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYM 121 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~ 121 (463)
.......+.+.++++ +||+||.-.+.
T Consensus 150 ------------~~~~~~~~~~~l~~~--~~Dlivlagy~ 175 (286)
T PRK06027 150 ------------KAEAEARLLELIDEY--QPDLVVLARYM 175 (286)
T ss_pred ------------cchhHHHHHHHHHHh--CCCEEEEecch
Confidence 001123345666776 99999977544
No 357
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=40.29 E-value=1.2e+02 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=25.7
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+||||++..|++.| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 58999988888776 578889888987777744
No 358
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=40.22 E-value=1.9e+02 Score=28.88 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEE
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
..+.++++.. +||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 3456677776 9999999964 578899999999875
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=40.15 E-value=2.3e+02 Score=28.30 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=33.7
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHH-hCCCeEEEEecCcchh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLS-HAGIKITFLNTEYYYD 47 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~-~rGh~V~~~~~~~~~~ 47 (463)
--|+++..++.|-..=...||..|. ++|.+|.++..+.+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3466777789999999999999997 5899999999875543
No 360
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=39.98 E-value=43 Score=30.20 Aligned_cols=37 Identities=3% Similarity=-0.088 Sum_probs=26.6
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEecCcc
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNTEYY 45 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~~ 45 (463)
|++.-.|+.+=+.=.+.|++.|+++ |++|.++.++..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a 40 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAG 40 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhH
Confidence 3433333333336899999999999 999999999553
No 361
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=39.96 E-value=42 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=22.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|||.++ +.||+ -+.+|-.|+++||+|+.+=..
T Consensus 1 M~I~Vi---GlGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVI---GLGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEE---CCCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 688888 45555 377889999999999988653
No 362
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=39.90 E-value=55 Score=27.94 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=47.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCH
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKF 86 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~ 86 (463)
-.|-+++..+.|-....+.+|=.-+-+|.+|.++-.=.....--+ .......+++.+......+.... ...
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE-----~~~l~~l~~~~~~~~g~~f~~~~----~~~ 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGE-----LKALKKLPNVEIERFGKGFVWRM----NEE 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HH-----HHHHGGGT--EEEE--TT----G----GGH
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCH-----HHHHHhCCeEEEEEcCCcccccC----CCc
Confidence 357889999999999888887776677888888864221000000 01122233477777665432221 011
Q ss_pred HHHHHHHHhhChHHHHHHHHcC-CCCceEEEEcCccc
Q 037374 87 TELIDSLNLAIPPLLKEMVTDS-NSPVNYIIADGYMS 122 (463)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~-~~~pDlIi~D~~~~ 122 (463)
..- .......++...+.+ +..+|+||-|-...
T Consensus 75 ~~~----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 75 EED----RAAAREGLEEAKEAISSGEYDLVILDEINY 107 (172)
T ss_dssp HHH----HHHHHHHHHHHHHHTT-TT-SEEEEETHHH
T ss_pred HHH----HHHHHHHHHHHHHHHhCCCCCEEEEcchHH
Confidence 111 111233333333333 46999999996554
No 363
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=39.75 E-value=1.5e+02 Score=28.49 Aligned_cols=88 Identities=9% Similarity=0.056 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH
Q 037374 22 SMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL 101 (463)
Q Consensus 22 p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (463)
-+..|++.|.++|++|++++.+...+...+-.. . .+........ ++ .-...-.++
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~-------------~--~~~~~~~~~~----~l------~g~~sL~el 255 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA-------------A--LNTEQQAWCR----NL------AGETQLEQA 255 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH-------------h--ccccccccee----ec------cCCCCHHHH
Confidence 478999999988999999988654443332110 0 0000000000 00 000011223
Q ss_pred HHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 102 KEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
..+++ +.|++|+. ..+...+|..+|+|++.+..
T Consensus 256 ~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 256 VILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 34444 66888865 44678899999999998754
No 364
>PRK06835 DNA replication protein DnaC; Validated
Probab=39.39 E-value=44 Score=31.92 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=35.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
-.++|+..+|.|-..=..++|.+|.++|+.|.|++.+.....+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4577887889998888889999999999999999886654444
No 365
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=39.38 E-value=27 Score=35.44 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=32.1
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|++.++++|.|+-.|..| .++|+.|.++||+|++.--
T Consensus 1 ~~~~~~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMG-----QNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEECC
Confidence 788889999999988777 5789999999999998854
No 366
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=39.37 E-value=34 Score=30.59 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 19 HVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 19 H~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|...|...|++|.++|++|.++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4567889999999999999999885
No 367
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=39.28 E-value=59 Score=28.67 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCCceEEEEcCccc-------hHHHHHHHhCCceEEEe
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMS-------HAIDVAREVGISIIYFC 139 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~-------~~~~~A~~lgiP~v~~~ 139 (463)
+.+.++++.+..+||+|++|.+.. .|..++-.+++|+|.+.
T Consensus 77 P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 77 PCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp HHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred HHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 455566677767899999998765 23456677789999973
No 368
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=39.26 E-value=91 Score=22.95 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEecCCCCC----CHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 1 MEKQDPAHVVIFPLPGVG----HVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~G----H~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|.+..-.+|-+=|+.+.| +...+-.|-..|++.||+|.+.-++.
T Consensus 1 Mp~~a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d 48 (88)
T PF15092_consen 1 MPKNAYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIED 48 (88)
T ss_pred CCCccEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 444443444555555656 56788899999999999999998744
No 369
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.17 E-value=53 Score=33.84 Aligned_cols=38 Identities=26% Similarity=0.481 Sum_probs=27.7
Q ss_pred CCEEEEec-C------CCCCCHHHHH---HHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFP-L------PGVGHVNSML---KLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~-~------~~~GH~~p~l---~La~~L~~rGh~V~~~~~~ 43 (463)
|.++++.+ + +-.||+.+++ .+||-++.+||+|.|+|..
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGt 51 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGT 51 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34565554 2 2458988755 6789999999999999963
No 370
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.16 E-value=47 Score=28.44 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCCceEEEEcCccch--HHHHHHHhCCceEEEe
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMSH--AIDVAREVGISIIYFC 139 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~~--~~~~A~~lgiP~v~~~ 139 (463)
-+..++. + +||+||....... ...--+..|||++.+.
T Consensus 61 n~E~ll~-l--~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 61 NVELIVA-L--KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CHHHHhc-c--CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 3444444 4 9999998654432 3344578899998874
No 371
>PRK06703 flavodoxin; Provisional
Probab=39.10 E-value=57 Score=26.91 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=28.6
Q ss_pred CCEEEEecCCCCCCHHHH-HHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSM-LKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~-l~La~~L~~rGh~V~~~~~ 42 (463)
||||+++-...+|+..-+ -.|++.|...|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 467777777788988764 4678889889999987754
No 372
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.97 E-value=36 Score=32.13 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+.|||.|+-.|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999777665 57899999999999988763
No 373
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.85 E-value=64 Score=29.40 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=28.6
Q ss_pred CCCCCC-CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDP-AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|..+.+ -|+++++.++.|. ---.++|+.|+++|++|++...
T Consensus 1 ~~~~~~~~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 1 MTTGLLQGKKGLITGIANNM-SISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred CCCcccCCcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEeC
Confidence 444432 3789999887631 1346788999999999988653
No 374
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=38.82 E-value=66 Score=30.17 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=29.6
Q ss_pred CCCEEEEecCCCCC-CH---HHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPLPGVG-HV---NSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~~~~G-H~---~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+++||+++..|... |- .....++++|.+.||+|+++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 37799999976555 43 4567899999999999988753
No 375
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=38.76 E-value=27 Score=31.31 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 037374 23 MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~ 42 (463)
..+||++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 45889999999999998753
No 376
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=38.66 E-value=70 Score=28.63 Aligned_cols=39 Identities=8% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|.++..++|+ ++ |+.|.+ -..|++.|.++|++|+.+...
T Consensus 1 ~~~~~~~~il-It-Gasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 1 TRDLEGRVAL-VT-GAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CCCCCCCEEE-Ec-CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3444444454 44 445665 578899999999999888753
No 377
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=38.59 E-value=34 Score=30.24 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCCCceEEEEcCccch---HHHHH----HHhCCceEEE
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMSH---AIDVA----REVGISIIYF 138 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~~---~~~~A----~~lgiP~v~~ 138 (463)
+.+.+.++.+...||+|++|.+... .+.+| ..+++|+|.+
T Consensus 81 p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 3355666666457999999988763 23333 4557888886
No 378
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=38.58 E-value=80 Score=29.55 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=35.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
+.-.|.+--.|+.|-=.-.-+|.++|.++||+|-++.-++.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 34467888899999999999999999999999999997654
No 379
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.56 E-value=1e+02 Score=25.63 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=53.0
Q ss_pred ccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHH
Q 037374 374 WPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVKRKEEFMESADQMANLAKKSVNEGGSLYCNLDRLVKDI 453 (463)
Q Consensus 374 ~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~i~~~ 453 (463)
+|-...+..+|+.+.++ .-++ ..-..+.|.+.+.+++.| +|.-+-++.+++..+.+. |......+.+++-++
T Consensus 78 yPWt~~~L~aa~el~ee-~eeL---s~deke~~~~sl~dL~~d-~PkT~vA~~rfKk~~~K~---g~~v~~~~~dIlVdv 149 (158)
T PF10083_consen 78 YPWTENALEAANELIEE-DEEL---SPDEKEQFKESLPDLTKD-TPKTKVAATRFKKILSKA---GSIVGDAIRDILVDV 149 (158)
T ss_pred CchHHHHHHHHHHHHHH-hhcC---CHHHHHHHHhhhHHHhhc-CCccHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence 35566777788877652 2111 233457789999999884 388888999999998887 767777788877777
Q ss_pred Hh
Q 037374 454 KM 455 (463)
Q Consensus 454 ~~ 455 (463)
.+
T Consensus 150 ~S 151 (158)
T PF10083_consen 150 AS 151 (158)
T ss_pred HH
Confidence 65
No 380
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=38.46 E-value=44 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=28.4
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHh--CCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSH--AGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGh~V~~~~~ 42 (463)
|++|+++||.++-.|..|. .+++.|.+ .|++|+.+..
T Consensus 1 ~~~m~~irIGIIG~G~IG~-----~~a~~L~~~~~~~el~aV~d 39 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGK-----AIAQALDRGLPGLTLSAVAV 39 (271)
T ss_pred CCCCCeeEEEEECccHHHH-----HHHHHHHhcCCCeEEEEEEC
Confidence 8889999999998876663 45677765 3788887766
No 381
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=38.38 E-value=79 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=24.1
Q ss_pred CEEEEec-CCCCCCH--HHHHHHHHHHHhCCCeE-EEEec
Q 037374 7 AHVVIFP-LPGVGHV--NSMLKLAELLSHAGIKI-TFLNT 42 (463)
Q Consensus 7 ~~il~~~-~~~~GH~--~p~l~La~~L~~rGh~V-~~~~~ 42 (463)
||++++- .+-+|+- .-.+.+|+++.++||+| .++..
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 4665544 3334544 45788899999999994 66655
No 382
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.23 E-value=77 Score=25.65 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=34.5
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+.||++...+.-+|-...-=++..|...|++|+.....
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 57999999999999999999999999999999998853
No 383
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=38.17 E-value=52 Score=32.22 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=32.9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
|++---|+.|--.=++.++..|+++| +|.|++.++...++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45555788899899999999999999 99999997655443
No 384
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=38.02 E-value=2.9e+02 Score=29.39 Aligned_cols=39 Identities=8% Similarity=0.003 Sum_probs=23.5
Q ss_pred HHHHHcCCCCceEEEEcCccc-hHHHHHHHhCCceEEEecch
Q 037374 102 KEMVTDSNSPVNYIIADGYMS-HAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~-~~~~~A~~lgiP~v~~~~~~ 142 (463)
.+.++.+ +||+||+-.+.. -...+-......++-++++.
T Consensus 68 ~~~l~~~--~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~sl 107 (660)
T PRK08125 68 VERIREL--APDVIFSFYYRNLLSDEILQLAPAGAFNLHGSL 107 (660)
T ss_pred HHHHHhc--CCCEEEEccccccCCHHHHhhcCCCEEEEeCCc
Confidence 3455666 999998765433 33334444555677777663
No 385
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=37.69 E-value=77 Score=23.01 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=28.3
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLN 41 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 41 (463)
+++...++.|-..-...|++.|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788899999999999999999998876
No 386
>PRK05993 short chain dehydrogenase; Provisional
Probab=37.60 E-value=64 Score=29.71 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=24.2
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|+|.++++.++ |-+ ...+|+.|+++|++|+...-
T Consensus 3 ~~k~vlItGas-ggi--G~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 3 MKRSILITGCS-SGI--GAYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCCEEEEeCCC-cHH--HHHHHHHHHHCCCEEEEEEC
Confidence 45677777543 322 35689999999999988865
No 387
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=37.42 E-value=1.5e+02 Score=25.08 Aligned_cols=66 Identities=9% Similarity=0.078 Sum_probs=38.4
Q ss_pred ccCcceeeeccCh------hhHHHHHHhCCccccccccc---------hh-hhHHHHHHHhhhcceeccCccCHHHHHHH
Q 037374 346 HKAVGGFLIHCGW------NSTLESIMAGMPMICWPSFA---------DQ-QINSRFVDEVWKLGLDIKDLFDRNIVEKA 409 (463)
Q Consensus 346 ~~~~~~~I~HgG~------gs~~eal~~GvP~v~~P~~~---------DQ-~~na~rv~~~~G~g~~l~~~~~~~~l~~~ 409 (463)
+..+ +++|.|- +++.+|...++|+|++.-.. -| ..+...+.+ .+.+....-.+++++...
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~--~~~k~~~~v~~~~~~~~~ 139 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEGRGAFQQEIDQQSLFR--PVTKWSYRVTSPDDLPEA 139 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTSSTHHHHHHG--GGSSEEEEECSGGGHHHH
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEecccchhhhcccccccchhhcchhc--cccchhcccCCHHHHHHH
Confidence 3445 8888874 47788999999999987431 12 333344422 444333233456666666
Q ss_pred HHHHHh
Q 037374 410 VNDLMV 415 (463)
Q Consensus 410 i~~vl~ 415 (463)
+.+.+.
T Consensus 140 ~~~A~~ 145 (172)
T PF02776_consen 140 LDRAFR 145 (172)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 388
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.39 E-value=29 Score=29.67 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=21.5
Q ss_pred cccCcceeeeccChhhHHHHHHhCCccccccccc
Q 037374 345 AHKAVGGFLIHCGWNSTLESIMAGMPMICWPSFA 378 (463)
Q Consensus 345 ~~~~~~~~I~HgG~gs~~eal~~GvP~v~~P~~~ 378 (463)
..+++ +|++||......... ++|+|-+|...
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 45666 999999999998877 99999999753
No 389
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=37.05 E-value=63 Score=29.91 Aligned_cols=38 Identities=16% Similarity=0.363 Sum_probs=32.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
-+|+|+.=||.|-..-...||..|+++|++|.++=-++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 36777777889999999999999999999999986544
No 390
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=36.86 E-value=2.4e+02 Score=25.18 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=50.2
Q ss_pred CEEEEecCCCCC--CH--HHHHHHHHHHHhCCCeEEEEecCcch-hhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVG--HV--NSMLKLAELLSHAGIKITFLNTEYYY-DRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 7 ~~il~~~~~~~G--H~--~p~l~La~~L~~rGh~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~ 81 (463)
-.|++.+..+.. .+ .-+..|++.|.++|.+|.+++++... +...+... . ....+.+.+ . .
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~---~-~~~~~~~~~---~----~---- 170 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA---A-GLQNPVINL---A----G---- 170 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH---T-THTTTTEEE---T----T----
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH---H-hcccceEee---c----C----
Confidence 356666554442 22 23689999999999999988886652 22221111 0 000000111 0 0
Q ss_pred CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecch
Q 037374 82 TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~ 142 (463)
..+ ..++-.++. +.|++|+- ..+...+|..+|+|++.+....
T Consensus 171 -~~~------------l~e~~ali~----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 -KTS------------LRELAALIS----RADLVIGN--DTGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -TS-------------HHHHHHHHH----TSSEEEEE--SSHHHHHHHHTT--EEEEESSS
T ss_pred -CCC------------HHHHHHHHh----cCCEEEec--CChHHHHHHHHhCCEEEEecCC
Confidence 001 112334444 67999865 3467889999999999986544
No 391
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=36.82 E-value=2.8e+02 Score=24.03 Aligned_cols=34 Identities=6% Similarity=0.164 Sum_probs=21.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCC--eEEEEecC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGI--KITFLNTE 43 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~V~~~~~~ 43 (463)
|||+++..+..+=. .+|.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEEC
Confidence 57888886654433 466667776655 67765554
No 392
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=36.77 E-value=2.6e+02 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=33.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
-|+++..++.|-..=+..||..|+.+|++|.++..+.+
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 46677777999999999999999999999999988654
No 393
>PRK03094 hypothetical protein; Provisional
Probab=36.61 E-value=32 Score=24.99 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 037374 23 MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~ 42 (463)
+-.|.++|+++||+|+=+-.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 45789999999999987755
No 394
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=36.51 E-value=56 Score=32.88 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=24.8
Q ss_pred HHHHHcCCCCceEEEEcCccc--hHHHHHHHhCCceEEEecch
Q 037374 102 KEMVTDSNSPVNYIIADGYMS--HAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~--~~~~~A~~lgiP~v~~~~~~ 142 (463)
+++++++..+||+|+.....- .|.++|+++|||.+.+.++.
T Consensus 392 ~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 392 REILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp HHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred HHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 333343345899999764433 67888999999998875543
No 395
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=36.48 E-value=2.4e+02 Score=23.71 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHHH
Q 037374 23 MLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLLK 102 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (463)
...+.+.|+++|+.+.+++.........+..+ ... .+.+....+... ..+.-... +.
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~--l~~-----~f~~~~~~~~~~-----~~kp~p~~-----------~~ 148 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEKLG--LID-----YFDAIVDPAEIK-----KGKPDPEI-----------FL 148 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHhcC--cHh-----hCcEEEehhhcC-----CCCCChHH-----------HH
Confidence 56778899999999999986544444444333 111 122221111110 01111111 12
Q ss_pred HHHHcCCCCc--eEEEEcCccchHHHHHHHhCCceEEE
Q 037374 103 EMVTDSNSPV--NYIIADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 103 ~~l~~~~~~p--DlIi~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
..++.+..+| -++|.|. .....+|+..|+++|.+
T Consensus 149 ~~~~~~~~~~~~~v~vgD~--~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 149 AAAEGLGVSPSECIGIEDA--QAGIEAIKAAGMFAVGV 184 (185)
T ss_pred HHHHHcCCCHHHeEEEecC--HHHHHHHHHcCCEEEec
Confidence 2223321122 4566775 57899999999999875
No 396
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=36.40 E-value=73 Score=29.77 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCC-CCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH-
Q 037374 24 LKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQ-IPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL- 101 (463)
Q Consensus 24 l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 101 (463)
+.+++.|.++|++|..+..+.-...+..... .+.... ..+....-+|-....+. ..+..........+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~p~~~~~~~--------~~i~~~~~~~~~~l~ 83 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFDQLEDGFTGAVK--CELLELDLTTLDVVILPVPGTSHD--------GKVATVFSNEKVVLT 83 (287)
T ss_pred HHHHHHHHHCCCEEEEEecccccccccccee--ecchhhhhccCCEEEECCccccCC--------ceEecccccCCcccc
Q ss_pred HHHHHcCCCCceEEEEcCccchHHH-HHHHhCCceE
Q 037374 102 KEMVTDSNSPVNYIIADGYMSHAID-VAREVGISII 136 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~~~~~-~A~~lgiP~v 136 (463)
+++++.+ ++..++.-.....-.. .|+..||+++
T Consensus 84 ~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 84 PELLEST--KGHCTIYVGISNPYLEQLAADAGVKLI 117 (287)
T ss_pred HHHHHhc--CCCCEEEEecCCHHHHHHHHHCCCeEE
No 397
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.29 E-value=56 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 16 GVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 16 ~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
..-.+...+-+...|.++|++|++.+++.
T Consensus 14 iP~qissaiYls~klkkkgf~v~VaateA 42 (148)
T COG4081 14 IPPQISSAIYLSHKLKKKGFDVTVAATEA 42 (148)
T ss_pred CCccchHHHHHHHHhhccCccEEEecCHh
Confidence 44567778889999999999999999965
No 398
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=36.27 E-value=2.6e+02 Score=23.47 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCCceEEEEcCccc---hHHHHHHHhCCceEEEecc
Q 037374 99 PLLKEMVTDSNSPVNYIIADGYMS---HAIDVAREVGISIIYFCTV 141 (463)
Q Consensus 99 ~~l~~~l~~~~~~pDlIi~D~~~~---~~~~~A~~lgiP~v~~~~~ 141 (463)
..+.+++++. +||+|++..... .+..+|..+|.|++.-...
T Consensus 73 ~al~~~i~~~--~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 73 PALVALAKKE--KPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHhc--CCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 3445666665 899999776655 5677899999999985443
No 399
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=36.13 E-value=1.6e+02 Score=23.24 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCeEEEEec
Q 037374 22 SMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 22 p~l~La~~L~~rGh~V~~~~~ 42 (463)
-+-++...|.++|++|++++-
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEEC
T ss_pred hhHHHHHHHHhcCCeEEEEEe
Confidence 455666778889999988874
No 400
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.02 E-value=66 Score=29.48 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=32.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|+|+.=||.|-..=...||..|+++|++|.++=..+
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4677777788999999999999999999999996644
No 401
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=36.01 E-value=2.6e+02 Score=23.47 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred EEecCCCCCCHHHHH-HHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCC--------CCCCCC
Q 037374 10 VIFPLPGVGHVNSML-KLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDG--------LPKDHP 80 (463)
Q Consensus 10 l~~~~~~~GH~~p~l-~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~--------~~~~~~ 80 (463)
+.+.+...+.+..++ .+|+.|.++|++|.=+........- ..........++++ +.+...
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~-----------~~~~~m~l~dl~~G~~~~IsQ~LG~gs~ 70 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD-----------GGRCDMDLRDLPSGRRIRISQDLGPGSR 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC-----------CCccceEEEECCCCCEEEEeeccCCCCc
Confidence 345556667777755 7899999999999888763311110 01112455555432 222221
Q ss_pred CCCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccc---------hHHHHHHHhCCceEEEecchhHHH
Q 037374 81 RTPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMS---------HAIDVAREVGISIIYFCTVSACAF 146 (463)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~---------~~~~~A~~lgiP~v~~~~~~~~~~ 146 (463)
...-+...+ .. ....++..+.. .+|++|..-|.- .....|-..|||+++..+......
T Consensus 71 gCrLD~~~L----a~-A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~ 137 (159)
T PF10649_consen 71 GCRLDPGAL----AE-ASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEA 137 (159)
T ss_pred ccccCHHHH----HH-HHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHH
Confidence 122222211 11 23445566665 899999876543 224456777999999877766543
No 402
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=35.90 E-value=44 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=25.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|+++++-.|-.| ..+|+.|.+.||+|+.+-..+
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 467776666544 578999999999999997643
No 403
>PRK06194 hypothetical protein; Provisional
Probab=35.67 E-value=77 Score=29.22 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=25.7
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.++++ |.++++.++ |-+ -..|+++|.++|++|+++..
T Consensus 1 m~~~~~-k~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 1 MKDFAG-KVAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CcCCCC-CEEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 665654 445566443 433 45689999999999988764
No 404
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=35.64 E-value=70 Score=25.53 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=28.6
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
++++.+|..+.-.-+..+++.|+++|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3567777777888899999999999999998855
No 405
>PLN02240 UDP-glucose 4-epimerase
Probab=35.60 E-value=61 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=23.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.++|++ + |+.|.+ -..|++.|.++||+|+.+..
T Consensus 5 ~~~vlI-t-GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILV-T-GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEE-E-CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 345554 3 566766 44678999999999998863
No 406
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=35.56 E-value=61 Score=32.37 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
..+||+++-.|..| ++.++.|.++|++|++.-..++.
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 47899999999998 89999999999999999764443
No 407
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=35.43 E-value=59 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.0
Q ss_pred EecCCCCC--CH--HHHHHHHHHHHhCCCeEE
Q 037374 11 IFPLPGVG--HV--NSMLKLAELLSHAGIKIT 38 (463)
Q Consensus 11 ~~~~~~~G--H~--~p~l~La~~L~~rGh~V~ 38 (463)
+++.|-.| +. ..+...++.|.++||.|+
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCCCEEe
Confidence 56666666 44 347789999999998876
No 408
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.17 E-value=48 Score=32.55 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
.+||++.-.|+.|= .-...+.+.|.+.|++|.++.++...+.+
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 45888877666554 55899999999999999999996544433
No 409
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=35.17 E-value=51 Score=32.67 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=25.2
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|||.++-.|..| +++|..|+++||+|+.+-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 578888766665 6889999999999988854
No 410
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=35.11 E-value=2e+02 Score=27.44 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=57.6
Q ss_pred CEEEEecCCCCC-----CHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCC
Q 037374 7 AHVVIFPLPGVG-----HVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPR 81 (463)
Q Consensus 7 ~~il~~~~~~~G-----H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~ 81 (463)
..|++.+..+.| -..-+..|++.|.++|.+|.+++++...+...+... .+.... .+..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~----------~~~~~~---~l~~---- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK----------GLPNAV---ILAG---- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH----------hcCCcc---ccCC----
Confidence 356666652432 234588999999999999999988643333333211 000000 0100
Q ss_pred CCCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEecch
Q 037374 82 TPDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCTVS 142 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~~ 142 (463)
.. ...++..++. ..|++|+. ..+...+|..+|.|+|.+....
T Consensus 239 -k~------------sL~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 239 -KT------------SLEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -CC------------CHHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECCC
Confidence 00 1122333433 67888855 3467889999999999985443
No 411
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=35.04 E-value=1.6e+02 Score=25.54 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.8
Q ss_pred CE-EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AH-VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~-il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.+ |+|+..++.-|-.-+..+++.|++.|.+|.+++-..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 46 677777777777677799999999999998888643
No 412
>PRK10818 cell division inhibitor MinD; Provisional
Probab=34.95 E-value=65 Score=29.60 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=31.0
Q ss_pred CEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+||+.+. -|+.|-..-...||..|+++|++|.++=...
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4654443 5688999999999999999999999987755
No 413
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.75 E-value=2.6e+02 Score=26.53 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=55.1
Q ss_pred EEEEecCCCCC-----CHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC
Q 037374 8 HVVIFPLPGVG-----HVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT 82 (463)
Q Consensus 8 ~il~~~~~~~G-----H~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~ 82 (463)
.|++.+..+.| ...-+..|++.|.++|++|++++++...+...+... ..++... +.
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~---------------~~~~~~~--~l-- 236 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA---------------LLPGELR--NL-- 236 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH---------------hCCcccc--cC--
Confidence 45555544333 233588999999989999999988654433322100 0000000 00
Q ss_pred CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 83 PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
. -......+..+++ +-|++|+. ..+...+|..+|+|+|.+..
T Consensus 237 ~----------g~~sL~el~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 237 A----------GETSLDEAVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred C----------CCCCHHHHHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 0 0001223334444 67899865 34678899999999998744
No 414
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=34.52 E-value=2.7e+02 Score=23.94 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=28.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
--|-+++..+.|-....+.+|=.-+-+|.+|.++-.
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 347888999999999888887776677888888863
No 415
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.44 E-value=53 Score=31.04 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=36.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
.+++...+|.|-..=+.+||.+|.++|+.|+|+..+.+...+..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 47777778999888889999999999999999988666555543
No 416
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=34.42 E-value=69 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=31.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|.|+.=||.|-..-.+.||.+|+++|++|.++=..+
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dp 39 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDP 39 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5666667788999999999999999999999996544
No 417
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=34.29 E-value=24 Score=35.42 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=39.6
Q ss_pred hHHHHHHhCCccccccccchhhhHHHHHHHhhhcceeccCccCHH---HHHHHHHHHHhHhHHHHHHHHHH
Q 037374 360 STLESIMAGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRN---IVEKAVNDLMVKRKEEFMESADQ 427 (463)
Q Consensus 360 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~---~l~~~i~~vl~~~~~~~~~~a~~ 427 (463)
++.||+++|+|+|+. ++-.=+..+ ...-.|...+. +++ .+++++.++.+| ++++.+..+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~--p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRD--PELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 788999999999987 333334444 22233444432 555 699999999998 888765544
No 418
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=34.12 E-value=1.5e+02 Score=27.10 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.4
Q ss_pred CCEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 6 PAHVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 6 ~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
..|-.|+- =|+.|...-.-.||-.|+.-+|.|.++++.+.+
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 34544544 457788888999999999999999999987654
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.09 E-value=2.2e+02 Score=28.30 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=31.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHH--hCCCeEEEEecCcc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLS--HAGIKITFLNTEYY 45 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~--~rGh~V~~~~~~~~ 45 (463)
.|+|+..+|.|-..=...||..++ +.|++|.+++.+.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 567777778899999999999987 56899999998765
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=33.65 E-value=81 Score=28.67 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=27.0
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.+++. |.++++.++.| --..+++.|+++|++|++..-
T Consensus 1 m~~~~~-k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 1 MIGLAG-KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCCCCC-CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 554433 56667755443 467889999999999988865
No 421
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=33.64 E-value=1.3e+02 Score=30.70 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 21 NSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
...-.++++|..+|++|.+++.....+.+
T Consensus 46 ~~~d~v~r~lr~~G~~v~~i~~~Dd~d~l 74 (510)
T PRK00750 46 ARTDMVRRALRDLGIKTRLIFFSDDMDGL 74 (510)
T ss_pred hhHHHHHHHHHHcCCcEEEEEEEecCCcc
Confidence 45668999999999999999986655433
No 422
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.41 E-value=4.1e+02 Score=24.84 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=31.3
Q ss_pred CceEEeccCh---HhhhcccCcceeeeccChhhHHHHHHhCCcccc
Q 037374 331 RGYIAGWVPQ---EEVLAHKAVGGFLIHCGWNSTLESIMAGMPMIC 373 (463)
Q Consensus 331 nv~~~~~vpq---~~iL~~~~~~~~I~HgG~gs~~eal~~GvP~v~ 373 (463)
.+.+++|+|| +.+|.-|++ -+-. |--|...|..+|+|.+=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW 281 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE
Confidence 4555699997 458999997 4444 67799999999999963
No 423
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=33.27 E-value=59 Score=27.29 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=25.5
Q ss_pred CCEEEEecCCCC--CCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 6 PAHVVIFPLPGV--GHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.+|.++..... -+..-...|+++|+++||.|+.-..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~ 39 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGR 39 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCc
Confidence 457877765532 2445577899999999997777443
No 424
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.17 E-value=63 Score=32.57 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=28.0
Q ss_pred CCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 037374 2 EKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLN 41 (463)
Q Consensus 2 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~ 41 (463)
...+.+||+|+-.|..| +-.+|+.|+++|++|+..=
T Consensus 3 ~~~~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D 38 (461)
T PRK00421 3 ELRRIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSD 38 (461)
T ss_pred CcCCCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEEC
Confidence 33455789999999876 3448999999999998754
No 425
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=33.08 E-value=43 Score=33.62 Aligned_cols=33 Identities=24% Similarity=0.145 Sum_probs=25.5
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
|||+++--|- ..++=|.+|+++||+||++-...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 4777766553 45788999999999999997643
No 426
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=33.01 E-value=83 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=30.8
Q ss_pred CEE-EEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 7 AHV-VIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 7 ~~i-l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|+| .++-+...|-..=+-+|++.|.+||++|..+=+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 455 4555668899999999999999999999999773
No 427
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.99 E-value=83 Score=25.34 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=35.2
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+|++-+.++-+|-.----++..|..+|++|+.....-..+.+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~ 44 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFID 44 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 47888899999999988889999999999999986433343333
No 428
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=32.97 E-value=1.2e+02 Score=29.08 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCEEEEecCCCC--CCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCC-
Q 037374 6 PAHVVIFPLPGV--GHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRT- 82 (463)
Q Consensus 6 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~- 82 (463)
+.||++++.|+. |=-+-..++.+.+..+|.+|.-+-. .+.--+... ...++.+.+.+....+....
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~-Gy~GL~~~~----------i~~l~~~~v~~~~~~GGT~lg 70 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYN-GYLGLLEGD----------IKPLTREDVDDLINRGGTFLG 70 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEec-chhhhcCCc----------ceeccccchhHHHhcCCeEEe
Confidence 578999998754 5666788999999999999988765 321111000 00122222221111111000
Q ss_pred CCCHHHHHHHHHhhChHHHHHHHHcCCCCceEEE---EcCccchHHHHHHHhCCceEEE
Q 037374 83 PDKFTELIDSLNLAIPPLLKEMVTDSNSPVNYII---ADGYMSHAIDVAREVGISIIYF 138 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pDlIi---~D~~~~~~~~~A~~lgiP~v~~ 138 (463)
+.....+ .. ........+-++++ +.|.+| .|...-.+..++++.++|+|.+
T Consensus 71 ssR~~~~-~~--~e~~~~~~~~l~~~--gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 71 SARFPEF-KT--EEGRKVAAENLKKL--GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred eCCCCCc-cc--HHHHHHHHHHHHHc--CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 0000000 00 00112333444555 888776 5666668899999999999985
No 429
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.81 E-value=93 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=28.6
Q ss_pred HHHHHHHcCCCCc--eEEEEcCccc-hHHHHHHHhCCceEEEecchhH
Q 037374 100 LLKEMVTDSNSPV--NYIIADGYMS-HAIDVAREVGISIIYFCTVSAC 144 (463)
Q Consensus 100 ~l~~~l~~~~~~p--DlIi~D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 144 (463)
.+.+++++. .+ .++|...+.- +|..+|+.+|+|.|.+.|....
T Consensus 48 ~l~~~i~~~--~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 48 QLEQLIEEL--KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHhC--CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 344566665 33 3555444433 7778999999999998776553
No 430
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=32.63 E-value=97 Score=27.57 Aligned_cols=38 Identities=8% Similarity=0.114 Sum_probs=26.4
Q ss_pred CEEEEecCC----CCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLP----GVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~----~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 478777641 11144456667788999999999999844
No 431
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.63 E-value=98 Score=24.11 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEe-------ccChHhhhc---ccCcceeeec
Q 037374 286 DQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAG-------WVPQEEVLA---HKAVGGFLIH 355 (463)
Q Consensus 286 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~-------~vpq~~iL~---~~~~~~~I~H 355 (463)
+...++++++++.+++++.....+. ...... +..+.++..+ |+....|+. ...+ ...|
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d--------~~s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~ 79 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPD--------TVSTHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIH 79 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGG--------TTGHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEE
T ss_pred HHHHHHHHHHHHhCCcceeccCchh--------cccccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--cccc
Confidence 4467899999999999988886431 111222 1445566554 666555443 4455 8899
Q ss_pred cChhhHHHHH
Q 037374 356 CGWNSTLESI 365 (463)
Q Consensus 356 gG~gs~~eal 365 (463)
+|+|-..|..
T Consensus 80 pGyg~lse~~ 89 (110)
T PF00289_consen 80 PGYGFLSENA 89 (110)
T ss_dssp STSSTTTTHH
T ss_pred cccchhHHHH
Confidence 9998777653
No 432
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=32.51 E-value=31 Score=30.08 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=25.8
Q ss_pred CceEEE-EcCccc-hHHHHHHHhCCceEEEecchh
Q 037374 111 PVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 111 ~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
.||+|| +|+..- -|..=|.++|||+|.+.-+-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 788876 666555 677789999999999866554
No 433
>PRK06180 short chain dehydrogenase; Provisional
Probab=32.50 E-value=85 Score=28.87 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=24.4
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+|.++++ |+.|.+ ...|++.|+++||+|+.+...
T Consensus 4 ~~~vlVt-Gasggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLIT-GVSSGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEe-cCCChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 3555665 444544 567889999999999988753
No 434
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.48 E-value=49 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
..||.++-.|..| ..+|..|+++||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 4689999777776 56788999999999999763
No 435
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.42 E-value=70 Score=29.41 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=26.0
Q ss_pred CeEEEEeccCcccCCHH-HHHHHHHHHhhC--CCcEEEEEcCC
Q 037374 270 QSVIYVSFGSVAVMSRD-QLIVFYYGLVNS--KNGFLWVIRPD 309 (463)
Q Consensus 270 ~~~v~vslGs~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~~ 309 (463)
|.+++|||||......+ .+..+.+.+++. ++.+.|.+.++
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 35899999998865444 777888888764 67899998653
No 436
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=32.39 E-value=96 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred CCEEEEecCCCCCCHHHHH-HHHHHHHhCCCeEEEEecCcch
Q 037374 6 PAHVVIFPLPGVGHVNSML-KLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l-~La~~L~~rGh~V~~~~~~~~~ 46 (463)
||||+++-....|+.--+- .|++.|...|++|.+...+...
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~ 42 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIK 42 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcc
Confidence 6799999999999987654 5677777889999666664443
No 437
>PRK05973 replicative DNA helicase; Provisional
Probab=32.26 E-value=97 Score=28.03 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=36.0
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 9 VVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 9 il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+++...|+.|-..=.+.++.+.+++|+.|.|++.+...+.+.+
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 5677788999999999999998889999999998766555544
No 438
>PRK05246 glutathione synthetase; Provisional
Probab=32.24 E-value=53 Score=31.18 Aligned_cols=39 Identities=10% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCEEEEecCCCC---CCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGV---GHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~---GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|||+|+.-|-. -.......|+++-.++||+|.++.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 378988886532 244667899999999999999999844
No 439
>PRK00170 azoreductase; Reviewed
Probab=32.24 E-value=95 Score=26.93 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCEEEEecCCCCC---CHHHHH-HHHHHHHhC--CCeEEEEec
Q 037374 6 PAHVVIFPLPGVG---HVNSML-KLAELLSHA--GIKITFLNT 42 (463)
Q Consensus 6 ~~~il~~~~~~~G---H~~p~l-~La~~L~~r--Gh~V~~~~~ 42 (463)
||||+++...-.. -..-++ .+.+.|.++ ||+|.++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5788777654333 233333 456677777 899988754
No 440
>PRK12829 short chain dehydrogenase; Provisional
Probab=32.18 E-value=89 Score=28.26 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
+..++++ + |+.|.+ ...+++.|.++||+|+.+.-.
T Consensus 10 ~~~~vlI-t-Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 10 DGLRVLV-T-GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CCCEEEE-e-CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3445444 4 444665 467899999999999887753
No 441
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=32.14 E-value=42 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=29.4
Q ss_pred EEeccChHhhhcccCc--ceeeeccChhhHHHHHHhCCccccc
Q 037374 334 IAGWVPQEEVLAHKAV--GGFLIHCGWNSTLESIMAGMPMICW 374 (463)
Q Consensus 334 ~~~~vpq~~iL~~~~~--~~~I~HgG~gs~~eal~~GvP~v~~ 374 (463)
+.+|-=++.+|..++- =..+||||.-++-.+++.|.-+|+=
T Consensus 467 vsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVaD 509 (561)
T COG2987 467 VSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVAD 509 (561)
T ss_pred hhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEec
Confidence 4477667877764431 1378999998999999888776653
No 442
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.07 E-value=74 Score=30.03 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=37.9
Q ss_pred hhcccCcceeeeccChhhHHHHHHh----CCccccccccchhhhHHHHHHHhhh-cceeccCccCHHHHHHHHHHHHhH
Q 037374 343 VLAHKAVGGFLIHCGWNSTLESIMA----GMPMICWPSFADQQINSRFVDEVWK-LGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 343 iL~~~~~~~~I~HgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
+...+++ +|+=||=||+..+... ++|++.+-. | +| .+ -+.+.+++.+++.+++++
T Consensus 65 ~~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~---------------G~lG-FL-t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 65 FDSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT---------------GHLG-FL-TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred cccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC---------------CCCc-cc-ccCCHHHHHHHHHHHHcC
Confidence 3345677 9999999999999774 778877721 1 11 11 345677788888888764
No 443
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=32.02 E-value=3.1e+02 Score=23.00 Aligned_cols=26 Identities=0% Similarity=-0.120 Sum_probs=14.0
Q ss_pred cCCHHHHHHHHHHHhhCCCcEEEEEc
Q 037374 282 VMSRDQLIVFYYGLVNSKNGFLWVIR 307 (463)
Q Consensus 282 ~~~~~~~~~~~~al~~~~~~~i~~~~ 307 (463)
...++.+.++++..+..+..+++...
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~A 61 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGA 61 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34555555555555555555555554
No 444
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=32.01 E-value=2.8e+02 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCeEEEEecCc
Q 037374 24 LKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 24 l~La~~L~~rGh~V~~~~~~~ 44 (463)
.+|...|.+.||+|++++-.+
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 467889999999999999543
No 445
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=31.94 E-value=1e+02 Score=28.56 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=29.5
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD 47 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 47 (463)
++++++.|+ =+.|++.++++|.++|++|+++......+
T Consensus 100 ~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 100 TVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred eEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 677777443 48999999999999999999887655443
No 446
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.70 E-value=58 Score=22.69 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 037374 23 MLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~ 42 (463)
-+..|..|+++|++|+++=.
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEec
Confidence 46788999999999999965
No 447
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.66 E-value=86 Score=23.08 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=27.5
Q ss_pred CEEEEecCCCC--CCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGV--GHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
-+|+++|.... .+..-...++..|.+.|.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46788886643 4566688999999999999988543
No 448
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.65 E-value=89 Score=28.27 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEecCCCC-CCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGV-GHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~-GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|+.+=..|+++++.++. +- =-.++|++|+++|++|++..-
T Consensus 1 ~~~~l~~k~~lItGas~~~g--IG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRS--IAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccCCCEEEEeCCCCCCc--hHHHHHHHHHHCCCEEEEecC
Confidence 44443357888887762 22 237899999999999988754
No 449
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=31.52 E-value=3.1e+02 Score=28.29 Aligned_cols=110 Identities=8% Similarity=0.068 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHH-HHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCC-------------CCCCC----
Q 037374 17 VGHVNSMLKLAEL-LSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTD-------------GLPKD---- 78 (463)
Q Consensus 17 ~GH~~p~l~La~~-L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~-------------~~~~~---- 78 (463)
.|++.=.+.+|+. +.+.|++|.+.-. ...+.+.+... +-.+.++- .....
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG-~ta~~i~~~~~-----------iPVv~i~~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGG-SNGAYLKSRLS-----------LPVIVIKPTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECc-hHHHHHHHhCC-----------CCEEEecCChhhHHHHHHHHHhcCCcEEEE
Confidence 4777778888844 6677898887766 66666666433 33444331 00000
Q ss_pred CCCCCCCHHHHHHHHHhh--------ChHHHHHHHHcC-CCCceEEEEcCccchHHHHHHHhCCceEEEecc
Q 037374 79 HPRTPDKFTELIDSLNLA--------IPPLLKEMVTDS-NSPVNYIIADGYMSHAIDVAREVGISIIYFCTV 141 (463)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~l~~~-~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~~ 141 (463)
.+...-.-...+..+... ........++.+ ..+.++||.|. -+...|+.+|++.|.+...
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 000111111222222211 133344444444 45999999996 3578999999999998664
No 450
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.44 E-value=75 Score=29.30 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=22.8
Q ss_pred ccCcceeeeccChhhHHHHHH------hCCcccccc
Q 037374 346 HKAVGGFLIHCGWNSTLESIM------AGMPMICWP 375 (463)
Q Consensus 346 ~~~~~~~I~HgG~gs~~eal~------~GvP~v~~P 375 (463)
.+++ +|+-||-||+..++. .++|++.+-
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 3566 999999999999986 478887763
No 451
>PRK10037 cell division protein; Provisional
Probab=31.42 E-value=86 Score=28.48 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=29.7
Q ss_pred EEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|.+.. =|+.|-..-...||.+|+++|++|.++=..+
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 444544 4678999999999999999999999995544
No 452
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.33 E-value=1.2e+02 Score=27.10 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
|...+ ||.++++. +.|.+ -..|++.|.++|++|+++.-.
T Consensus 1 ~~~~~-~k~vlItG-~sg~i--G~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 1 MSLNS-MPRALITG-ASSGI--GKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCC-CCEEEEeC-CCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 55544 56666664 34433 467899999999999998753
No 453
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=31.33 E-value=3.1e+02 Score=27.35 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=24.8
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
..||+++-.+-. .+.+++++.+.|++|+.+.+..
T Consensus 2 ~~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~~ 35 (450)
T PRK06111 2 FQKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSEA 35 (450)
T ss_pred cceEEEECCcHH-----HHHHHHHHHHcCCeEEEEechh
Confidence 357777765443 3778888888899999987643
No 454
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.29 E-value=95 Score=28.93 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEeccChHhhhcccCcceeeeccChhhH
Q 037374 282 VMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWVPQEEVLAHKAVGGFLIHCGWNST 361 (463)
Q Consensus 282 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~iL~~~~~~~~I~HgG~gs~ 361 (463)
..+.+....+.+|+.....+.||...+. . .-.++.++++...+-+++.. ||-+.-..++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG------~-------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL 103 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGG------Y-------------GANRLLPYLDYDLIRANPKI--FVGYSDITAL 103 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCc------C-------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHH
Confidence 3455667789999999999999999642 1 23455666777666677777 8888888888
Q ss_pred HHHHHh--CCcccccccc
Q 037374 362 LESIMA--GMPMICWPSF 377 (463)
Q Consensus 362 ~eal~~--GvP~v~~P~~ 377 (463)
+-+++. |++.+.=|..
T Consensus 104 ~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 104 HLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHhcCceEEECccc
Confidence 877754 6777666654
No 455
>PRK07806 short chain dehydrogenase; Provisional
Probab=31.16 E-value=84 Score=28.15 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.+++..++ +++ |+.|-+ -..+++.|.++||+|+.+.-
T Consensus 1 ~~~~~~k~v-lIt-Gasggi--G~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 1 MGDLPGKTA-LVT-GSSRGI--GADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCCCcEE-EEE-CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 555544444 444 333433 35678999999999988754
No 456
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.05 E-value=59 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEec
Q 037374 21 NSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.|.+.|+++|.++|.+|.+.=|
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 7999999999999999888755
No 457
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=30.97 E-value=1.1e+02 Score=27.58 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEecCcch
Q 037374 14 LPGVGHVNSMLKLAELLSHAGIKITFLNTEYYY 46 (463)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~ 46 (463)
=||.|-..-.+.||.+|+++|-.|+++=.+++.
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQ 42 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 468899999999999999999999999887653
No 458
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=30.89 E-value=4.4e+02 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCceEEEEcCccc----hHHHHHHHhCCceEEEec
Q 037374 100 LLKEMVTDSNSPVNYIIADGYMS----HAIDVAREVGISIIYFCT 140 (463)
Q Consensus 100 ~l~~~l~~~~~~pDlIi~D~~~~----~~~~~A~~lgiP~v~~~~ 140 (463)
.++.++.. ++|.||..+... ....-|...|||+|.+..
T Consensus 72 ~i~~li~~---~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 72 LINNFVNQ---GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred HHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 34455555 899999865543 234456778999999743
No 459
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.87 E-value=1e+02 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=29.4
Q ss_pred CEEEE-ecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVI-FPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~-~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+|..+ +..|+.--+.|..-++...+..|++|+++.+
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 34433 3456777899999999999999999999988
No 460
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=30.80 E-value=88 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
..++|+++.-----=..-+-+....|+++||+|++++-
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 45777666522222224456667778899999999985
No 461
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.68 E-value=45 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEecCc
Q 037374 23 MLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+-.+.++|.++||+|+-+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887644
No 462
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.66 E-value=37 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=25.8
Q ss_pred CceEEE-EcCccc-hHHHHHHHhCCceEEEecchh
Q 037374 111 PVNYII-ADGYMS-HAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 111 ~pDlIi-~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 143 (463)
.||+|| .|+..- -|..=|..+|||+|.+.-+-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 788876 666555 677789999999999876554
No 463
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=30.53 E-value=85 Score=28.92 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=30.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|.++-=|+.|-..-...||-+|+++|++|.++=..+
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dp 39 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP 39 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 4556656688899999999999999999999996544
No 464
>PLN02735 carbamoyl-phosphate synthase
Probab=30.48 E-value=4.2e+02 Score=30.25 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCEEEEecCCC--CCCH----HHHHHHHHHHHhCCCeEEEEecCc
Q 037374 6 PAHVVIFPLPG--VGHV----NSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~--~GH~----~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
+.||+++..|. .|+. .....++++|++.|++|+.+.+.+
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 46899988775 3433 567899999999999999998754
No 465
>PLN00016 RNA-binding protein; Provisional
Probab=30.46 E-value=62 Score=31.56 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCEEEEec--CCCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 037374 6 PAHVVIFP--LPGVGHVNSMLKLAELLSHAGIKITFLNTE 43 (463)
Q Consensus 6 ~~~il~~~--~~~~GH~~p~l~La~~L~~rGh~V~~~~~~ 43 (463)
++||+++. .|+.|.+- ..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 46787762 24455543 46789999999999998864
No 466
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=30.44 E-value=87 Score=29.43 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=33.6
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
..++++.+|..-|..-+..|+..|.++|++|..+=...
T Consensus 34 ~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~RG 71 (298)
T COG2267 34 KGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLRG 71 (298)
T ss_pred CcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 37889999999999999999999999999998886644
No 467
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.43 E-value=2e+02 Score=27.57 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=22.5
Q ss_pred CceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 111 PVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 111 ~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
+-|++|+. ..+...+|..+|+|+|.+..
T Consensus 262 ~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 67899866 44678899999999999754
No 468
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=30.41 E-value=43 Score=31.53 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=30.6
Q ss_pred hhcccCcceeeeccChhhHHHHHH----hCCccccccccch
Q 037374 343 VLAHKAVGGFLIHCGWNSTLESIM----AGMPMICWPSFAD 379 (463)
Q Consensus 343 iL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~D 379 (463)
.|..-+++.+|.=||-+|..-|.. +++|+|.+|-+.|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 566778888999999999977753 7999999997644
No 469
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.36 E-value=3.6e+02 Score=24.69 Aligned_cols=86 Identities=9% Similarity=0.123 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHH
Q 037374 21 NSMLKLAELLSHAGIKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPL 100 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (463)
.-+..|++.|.++|++|++++.+...+...+... .++.. .........+ ..+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~---------------~~~~~-~~~~~~~~~~------------l~e 191 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAA---------------ALGGP-RVVNLAGKTS------------LRE 191 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH---------------hcCCC-ccccCcCCCC------------HHH
Confidence 4588999999999999999887654333332111 00000 0000000001 122
Q ss_pred HHHHHHcCCCCceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 101 LKEMVTDSNSPVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 101 l~~~l~~~~~~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
+..+++ +-|++|+-- .+...+|..+|+|++.+..
T Consensus 192 ~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 192 LAALLA----RADLVVTND--SGPMHLAAALGTPTVALFG 225 (279)
T ss_pred HHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 334444 568888642 3567788899999999854
No 470
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=30.32 E-value=99 Score=27.92 Aligned_cols=39 Identities=23% Similarity=0.089 Sum_probs=27.2
Q ss_pred CCCCCC-CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQDP-AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~~-~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.++++ -|+++++.++. . --..+|++|+++|++|+++..
T Consensus 1 ~~~~~l~~k~~lItGas~-g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 1 MQLFDLNGKVAIITGCNT-G--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCCcccCCCEEEEeCCCc-h--HHHHHHHHHHHCCCEEEEecC
Confidence 443432 36778876554 2 456889999999999988754
No 471
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.30 E-value=75 Score=28.24 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=26.4
Q ss_pred HHHcCCCCceEEEEcCcc--chHHHHHHHhCCceEEEecchh
Q 037374 104 MVTDSNSPVNYIIADGYM--SHAIDVAREVGISIIYFCTVSA 143 (463)
Q Consensus 104 ~l~~~~~~pDlIi~D~~~--~~~~~~A~~lgiP~v~~~~~~~ 143 (463)
.+..+ +||+||..... .....-....++|++.+.....
T Consensus 55 ~i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 55 AILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp HHHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred HHHhC--CCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 34444 99999988777 3556667788999999877653
No 472
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.30 E-value=97 Score=29.25 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=23.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|||++. |+.|.+- ..|+++|.++||+|+.++-
T Consensus 1 MkIlVt--GatG~iG--~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVI--GATGTLG--RQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEEc
Confidence 466664 6666543 4578899999999999875
No 473
>COG2733 Predicted membrane protein [Function unknown]
Probab=30.25 E-value=2.1e+02 Score=27.82 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=33.3
Q ss_pred hCCcc-ccccccchhhhHHHHHHHhhhcceecc-CccCHHHHHHHHHHH
Q 037374 367 AGMPM-ICWPSFADQQINSRFVDEVWKLGLDIK-DLFDRNIVEKAVNDL 413 (463)
Q Consensus 367 ~GvP~-v~~P~~~DQ~~na~rv~~~~G~g~~l~-~~~~~~~l~~~i~~v 413 (463)
+-+|+ +.+|+++==|.|=.|+.+ ++|..+. +-++++.|.+++++.
T Consensus 62 Fr~PlgipipHTAIIprNKdri~e--~l~~FV~~~fLs~e~i~~Kl~~~ 108 (415)
T COG2733 62 FRHPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNNFLSPESINEKLRRA 108 (415)
T ss_pred HhcCCCCCCcchhhccccHHHHHH--HHHHHHHHcccChHHHHHHHHhc
Confidence 34777 568888777888888853 7888887 678888887777654
No 474
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=30.22 E-value=93 Score=24.51 Aligned_cols=36 Identities=8% Similarity=0.284 Sum_probs=28.8
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcc
Q 037374 10 VIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 10 l~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~ 45 (463)
+++.+...|....++.+++.++++|..|+.++....
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 344444778889999999999999999999987443
No 475
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.20 E-value=1.1e+02 Score=27.90 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.7
Q ss_pred EEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 8 HVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 8 ~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
.|++.+ -||.|-..=.-.||..|++.|++|+.+=-
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDL 38 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 344444 56889999999999999999999998864
No 476
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=30.18 E-value=1.5e+02 Score=27.66 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCeEEEEecCcc
Q 037374 24 LKLAELLSHAGIKITFLNTEYY 45 (463)
Q Consensus 24 l~La~~L~~rGh~V~~~~~~~~ 45 (463)
.++|..|+++|++|.++...+.
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 4688899999999999998654
No 477
>PRK08181 transposase; Validated
Probab=30.03 E-value=72 Score=29.52 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=33.0
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchh
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYD 47 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~ 47 (463)
-.++++..+|.|-..=..+++.++.++|+.|.|+..+...+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 35888888899977778899999999999999988744433
No 478
>PRK06523 short chain dehydrogenase; Provisional
Probab=30.01 E-value=1e+02 Score=27.91 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|.++++.++.| --..+++.|+++|++|+.+..
T Consensus 10 k~vlItGas~g---IG~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 10 KRALVTGGTKG---IGAATVARLLEAGARVVTTAR 41 (260)
T ss_pred CEEEEECCCCc---hhHHHHHHHHHCCCEEEEEeC
Confidence 56666654432 346899999999999988865
No 479
>PLN02929 NADH kinase
Probab=29.93 E-value=70 Score=30.07 Aligned_cols=66 Identities=11% Similarity=0.035 Sum_probs=41.6
Q ss_pred cccCcceeeeccChhhHHHHHHh---CCccccccccc------hhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHh
Q 037374 345 AHKAVGGFLIHCGWNSTLESIMA---GMPMICWPSFA------DQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMV 415 (463)
Q Consensus 345 ~~~~~~~~I~HgG~gs~~eal~~---GvP~v~~P~~~------DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~ 415 (463)
..+++ +|+-||-||+..|.+. ++|++.+-..- .++.|.-. +..-+|-. -..+.+++.++|.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL--~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL--CAATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc--ccCCHHHHHHHHHHHHc
Confidence 34577 9999999999998654 67887764431 12222211 11123322 24678889999999987
Q ss_pred H
Q 037374 416 K 416 (463)
Q Consensus 416 ~ 416 (463)
.
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 4
No 480
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.90 E-value=67 Score=23.26 Aligned_cols=28 Identities=36% Similarity=0.319 Sum_probs=20.0
Q ss_pred CceEEEEcCccc--hHHHHHHHhCCceEEE
Q 037374 111 PVNYIIADGYMS--HAIDVAREVGISIIYF 138 (463)
Q Consensus 111 ~pDlIi~D~~~~--~~~~~A~~lgiP~v~~ 138 (463)
+.--||++.-.. .+..+|+.+|||++.-
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg 59 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVG 59 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEES
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEe
Confidence 555666655544 7788999999999984
No 481
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=29.85 E-value=1.2e+02 Score=27.16 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=29.9
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhCCCe-EEEEec
Q 037374 7 AHVVIFPLPGVGHVNSMLKLAELLSHAGIK-ITFLNT 42 (463)
Q Consensus 7 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~-V~~~~~ 42 (463)
.=|+|...|..|--.....|.++|+++|+. ++.+..
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 357788899999999999999999999986 555544
No 482
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.77 E-value=86 Score=29.97 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=28.3
Q ss_pred hHHHHHHHHcCCCCceEEEEcCccchH----------HHHHHHhCCceEEE
Q 037374 98 PPLLKEMVTDSNSPVNYIIADGYMSHA----------IDVAREVGISIIYF 138 (463)
Q Consensus 98 ~~~l~~~l~~~~~~pDlIi~D~~~~~~----------~~~A~~lgiP~v~~ 138 (463)
...+.++++.+ +||++|+.+.+-.+ ..+.+.++||.+.-
T Consensus 69 ~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 69 LKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44556777887 99999998876522 12457899999974
No 483
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=29.77 E-value=97 Score=28.44 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=30.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|.+..=|+.|-..-...||..|+++|++|.++=..+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 3445556788999999999999999999999985544
No 484
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.73 E-value=2.5e+02 Score=25.66 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCC-CeEEEEecCcchhhhhhccCCCCCccCCCCCeEEEEcCCCCCCCCCCCCCCHHHHHHHHHhhChHHH
Q 037374 23 MLKLAELLSHAG-IKITFLNTEYYYDRVIRHSSDGFSRYMQIPGLQLKTVTDGLPKDHPRTPDKFTELIDSLNLAIPPLL 101 (463)
Q Consensus 23 ~l~La~~L~~rG-h~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (463)
+-..++.|.+.+ .+|.+.+.......+.+ .. .....+-+..+|..-.. ..-.....+.+.-....+.=
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~-~~------~~~~r~~~RvLp~~~~~----~g~~~~~iia~~GPfs~e~n 186 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVP-AP------LPGERLFARVLPTPESA----LGFPPKNIIAMQGPFSKELN 186 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhh-cc------cCCCEEEEEECCCcccc----CCCChhhEEEEeCCCCHHHH
Confidence 456677777777 66666555455555533 11 11122444445531111 01011111111112234445
Q ss_pred HHHHHcCCCCceEEEEcCccc----hHHHHHHHhCCceEEE
Q 037374 102 KEMVTDSNSPVNYIIADGYMS----HAIDVAREVGISIIYF 138 (463)
Q Consensus 102 ~~~l~~~~~~pDlIi~D~~~~----~~~~~A~~lgiP~v~~ 138 (463)
..++++. +.|+||+-..-- .=..+|..+|||++.+
T Consensus 187 ~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 187 RALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 6788887 999999754432 2256899999999996
No 485
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=29.60 E-value=2.4e+02 Score=27.33 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCcchhh
Q 037374 21 NSMLKLAELLSHAGIKITFLNTEYYYDR 48 (463)
Q Consensus 21 ~p~l~La~~L~~rGh~V~~~~~~~~~~~ 48 (463)
...-.+++.|..+|++|.|++.....+.
T Consensus 42 i~~D~i~R~lr~~G~~v~~v~~~Dd~d~ 69 (353)
T cd00674 42 ITADLVARALRDLGFEVRLIYSWDDYDR 69 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcCCCc
Confidence 4556789999999999999998655443
No 486
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=29.50 E-value=4.2e+02 Score=26.03 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=39.6
Q ss_pred eeeeccChhhHHHHHHhCCcccc--ccccchh------hhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 351 GFLIHCGWNSTLESIMAGMPMIC--WPSFADQ------QINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 351 ~~I~HgG~gs~~eal~~GvP~v~--~P~~~DQ------~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
++-|+ |+.++..|+.+|.|+-. ++.++|- -.|+-+++..+-... -..+.+++..+|.++++|
T Consensus 247 GVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~v---vvV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 247 GVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRV---VVVEDDEIAAAILRLFED 316 (457)
T ss_pred EEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceE---EEeccHHHHHHHHHHHHh
Confidence 35555 67899999999998732 3344442 234445533211122 247889999999999987
No 487
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=29.44 E-value=60 Score=31.53 Aligned_cols=35 Identities=31% Similarity=0.262 Sum_probs=29.7
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.+++|+++-.|..| +..|-.|+++|++|+++-...
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 36789999887777 899999999999999997543
No 488
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=29.25 E-value=5e+02 Score=27.04 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhHhhhcCCCCeEEEEeccCcccCCHHHHHHHHHHHhhCCCcEEEEEcCCCCCCCCCCCCCchhHHHHhcCCceEEecc
Q 037374 259 SCIAWLDKQPKQSVIYVSFGSVAVMSRDQLIVFYYGLVNSKNGFLWVIRPDLISGKDGESQIPEEVVEATKERGYIAGWV 338 (463)
Q Consensus 259 ~l~~~l~~~~~~~~v~vslGs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~v 338 (463)
++.+|.-.+..+.++.+++|++. .......+.|.+.+..+-++ |.+++.-+
T Consensus 491 ~~Gk~~i~~~G~~vail~~G~~~----~~al~vae~L~~~Gi~~TVv-------------------------d~rfvkPl 541 (627)
T COG1154 491 EIGKGELLKEGEKVAILAFGTML----PEALKVAEKLNAYGISVTVV-------------------------DPRFVKPL 541 (627)
T ss_pred cccceEEEecCCcEEEEecchhh----HHHHHHHHHHHhcCCCcEEE-------------------------cCeecCCC
Q ss_pred ChH---hhhcccCcceeee------ccChhhHHHH--HHhC--Cccccccc---cchhhhHHHHHHHhhhcceeccCccC
Q 037374 339 PQE---EVLAHKAVGGFLI------HCGWNSTLES--IMAG--MPMICWPS---FADQQINSRFVDEVWKLGLDIKDLFD 402 (463)
Q Consensus 339 pq~---~iL~~~~~~~~I~------HgG~gs~~ea--l~~G--vP~v~~P~---~~DQ~~na~rv~~~~G~g~~l~~~~~ 402 (463)
+.. ++..+-++ +|| +||.||-.-- ..+| +|++.+.+ +.||-.-...+ .+ -.++
T Consensus 542 D~~ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~-~~--------~gLd 610 (627)
T COG1154 542 DEALLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELL-AE--------LGLD 610 (627)
T ss_pred CHHHHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHH-HH--------cCCC
Q ss_pred HHHHHHHHHHHH
Q 037374 403 RNIVEKAVNDLM 414 (463)
Q Consensus 403 ~~~l~~~i~~vl 414 (463)
++.|.+.|...+
T Consensus 611 ~~~i~~~i~~~l 622 (627)
T COG1154 611 AEGIARRILEWL 622 (627)
T ss_pred HHHHHHHHHHHH
No 489
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=29.20 E-value=1.8e+02 Score=29.78 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCcchhhhhh
Q 037374 20 VNSMLKLAELLSHAGIKITFLNTEYYYDRVIR 51 (463)
Q Consensus 20 ~~p~l~La~~L~~rGh~V~~~~~~~~~~~~~~ 51 (463)
+.+.-.++++|..+|++|.+++.....+.+.+
T Consensus 40 ~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRK 71 (515)
T TIGR00467 40 VITADAIARALRDSGSEARFIYIADNYDPLRK 71 (515)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEEEcCCccccc
Confidence 36677899999999999999998777665555
No 490
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.09 E-value=88 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=38.2
Q ss_pred hhhcccCcceeeeccChhhHHHHHH----hCCccccccccchhhhHHHHHHHhhhcceeccCccCHHHHHHHHHHHHhH
Q 037374 342 EVLAHKAVGGFLIHCGWNSTLESIM----AGMPMICWPSFADQQINSRFVDEVWKLGLDIKDLFDRNIVEKAVNDLMVK 416 (463)
Q Consensus 342 ~iL~~~~~~~~I~HgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~l~~~i~~vl~~ 416 (463)
++...+++ +|+=||=||+..|.. .++|++.+-.. -+|- + -..+.+++.+++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L-~~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG--------------HLGF-L-TQIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC--------------CCeE-e-eccCHHHHHHHHHHHHcC
Confidence 33345677 999999999999975 37888776211 0111 1 346677788888887763
No 491
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=29.05 E-value=1e+02 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=28.0
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 9 VVIFPLP-GVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 9 il~~~~~-~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
+.+.+.+ ..|-..=.+.|++.|.++|++|.++=+
T Consensus 5 ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP 39 (231)
T PRK12374 5 FFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP 39 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc
Confidence 5555554 468999999999999999999999854
No 492
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=28.79 E-value=3e+02 Score=26.55 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=42.9
Q ss_pred eccChHhhhcccCcceeee------ccChhhHHHHHHhCCcccc-ccccchhhhHHHHHHHhhhcceec
Q 037374 336 GWVPQEEVLAHKAVGGFLI------HCGWNSTLESIMAGMPMIC-WPSFADQQINSRFVDEVWKLGLDI 397 (463)
Q Consensus 336 ~~vpq~~iL~~~~~~~~I~------HgG~gs~~eal~~GvP~v~-~P~~~DQ~~na~rv~~~~G~g~~l 397 (463)
-|-+..++|...++..+.+ +-+.--+.+|+.+|+.+++ =|+..++-.--.+++++.|+=..+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4677888898888866664 2445678889999999988 677766655555555544554443
No 493
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=28.73 E-value=2.5e+02 Score=22.99 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCeEEEEecCc
Q 037374 23 MLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 23 ~l~La~~L~~rGh~V~~~~~~~ 44 (463)
...+.+.|+++|+.+.+++...
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~ 103 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGS 103 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSE
T ss_pred hhhhhhhcccccceeEEeecCC
Confidence 5678889998999999998753
No 494
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=28.65 E-value=1.2e+02 Score=27.36 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=23.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 5 DPAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 5 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
++++|+++- +.|. -...|++.|.++||+|+.++-
T Consensus 16 ~~~~ilItG--asG~--iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAG--ATGR--TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEEC--CCcH--HHHHHHHHHHhCCCEEEEEec
Confidence 356666654 3342 346788899999999987764
No 495
>PRK08339 short chain dehydrogenase; Provisional
Probab=28.63 E-value=1e+02 Score=28.17 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=27.8
Q ss_pred CCCCC-CCEEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 1 MEKQD-PAHVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 1 m~~~~-~~~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|..++ .-|+++++.++.| --.++|+.|+++|++|++..-
T Consensus 1 ~~~~~l~~k~~lItGas~g---IG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 1 MLKIDLSGKLAFTTASSKG---IGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCccCCCCCEEEEeCCCCc---HHHHHHHHHHHCCCEEEEEeC
Confidence 44443 2478888766543 356789999999999988764
No 496
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=28.52 E-value=75 Score=30.10 Aligned_cols=33 Identities=6% Similarity=0.004 Sum_probs=25.4
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHhC--CCeEEEEecCc
Q 037374 6 PAHVVIFPLPGVGHVNSMLKLAELLSHA--GIKITFLNTEY 44 (463)
Q Consensus 6 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~V~~~~~~~ 44 (463)
||||++...++. + ++++.|++. |++|..+...+
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCC
Confidence 689999987544 2 788999988 49988886643
No 497
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.51 E-value=69 Score=27.12 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEecCc
Q 037374 14 LPGVGHVNSMLKLAELLSHAGIKITFLNTEY 44 (463)
Q Consensus 14 ~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~ 44 (463)
.|+.|++- ..|+++|.++||+|+.++-.+
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCc
Confidence 46666664 458999999999999999754
No 498
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=28.26 E-value=3.2e+02 Score=25.62 Aligned_cols=28 Identities=4% Similarity=0.036 Sum_probs=22.4
Q ss_pred CceEEEEcCccchHHHHHHHhCCceEEEec
Q 037374 111 PVNYIIADGYMSHAIDVAREVGISIIYFCT 140 (463)
Q Consensus 111 ~pDlIi~D~~~~~~~~~A~~lgiP~v~~~~ 140 (463)
+.|++|+. ..+...+|..+|+|++.+..
T Consensus 254 ~a~l~I~~--DSgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGV--DTGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeC--CChHHHHHHHcCCCEEEEEC
Confidence 67999965 44678899999999998754
No 499
>PRK12377 putative replication protein; Provisional
Probab=28.23 E-value=89 Score=28.50 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhCCCeEEEEecCcchhhh
Q 037374 8 HVVIFPLPGVGHVNSMLKLAELLSHAGIKITFLNTEYYYDRV 49 (463)
Q Consensus 8 ~il~~~~~~~GH~~p~l~La~~L~~rGh~V~~~~~~~~~~~~ 49 (463)
.++|.-.+|.|-..=..+|+.+|.++|+.|.|++.+.....+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 477777789998888899999999999999998875543433
No 500
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=28.22 E-value=58 Score=28.92 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=22.8
Q ss_pred CEEEEec-CCCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 037374 7 AHVVIFP-LPGVGHVNSMLKLAELLSHAGIKITFLNT 42 (463)
Q Consensus 7 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~V~~~~~ 42 (463)
|||.|+- .|..| ..|+..|+++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 5787773 34333 4788999999999998754
Done!