Query 037375
Match_columns 183
No_of_seqs 119 out of 1233
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965 Sodium/hydrogen exchan 100.0 2.7E-35 5.9E-40 266.8 11.7 176 7-183 15-199 (575)
2 KOG1966 Sodium/hydrogen exchan 100.0 1.9E-29 4.2E-34 228.9 10.9 157 21-183 36-200 (670)
3 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.4E-26 3.1E-31 213.2 16.4 157 21-183 3-168 (559)
4 TIGR00831 a_cpa1 Na+/H+ antipo 99.8 4E-18 8.7E-23 156.3 14.1 131 35-183 6-143 (525)
5 COG0025 NhaP NhaP-type Na+/H+ 99.7 3.1E-17 6.7E-22 147.2 13.7 142 26-182 5-154 (429)
6 TIGR00844 c_cpa1 na(+)/h(+) an 99.4 2.4E-12 5.2E-17 122.2 15.6 133 27-171 13-153 (810)
7 PRK05326 potassium/proton anti 99.4 6E-12 1.3E-16 116.3 14.9 127 29-174 8-143 (562)
8 COG3263 NhaP-type Na+/H+ and K 99.3 6.2E-11 1.3E-15 105.9 13.6 123 34-174 14-144 (574)
9 TIGR00932 2a37 transporter, mo 98.9 3.4E-08 7.3E-13 83.1 12.1 122 38-174 3-127 (273)
10 PF00999 Na_H_Exchanger: Sodiu 98.7 5E-09 1.1E-13 91.5 0.4 122 39-173 8-134 (380)
11 PRK03659 glutathione-regulated 98.2 3.5E-05 7.5E-10 72.2 13.7 126 33-174 11-139 (601)
12 PRK03562 glutathione-regulated 98.1 4.7E-05 1E-09 71.7 13.6 130 30-174 8-139 (621)
13 PRK10669 putative cation:proto 98.0 0.0002 4.4E-09 66.3 14.2 126 31-174 10-140 (558)
14 KOG4505 Na+/H+ antiporter [Ino 98.0 0.00023 5E-09 62.6 13.4 123 41-172 27-154 (467)
15 COG0475 KefB Kef-type K+ trans 97.9 0.00021 4.5E-09 63.9 12.3 133 29-174 8-143 (397)
16 PLN03159 cation/H(+) antiporte 97.1 0.016 3.5E-07 56.5 14.5 135 33-174 49-193 (832)
17 PRK03659 glutathione-regulated 92.7 3.1 6.8E-05 39.2 13.1 67 92-166 267-338 (601)
18 PRK03562 glutathione-regulated 91.8 3.4 7.4E-05 39.2 12.4 67 91-165 269-340 (621)
19 COG0786 GltS Na+/glutamate sym 90.8 3.2 6.9E-05 37.5 10.4 113 34-158 12-134 (404)
20 PRK04125 murein hydrolase regu 89.7 5.7 0.00012 30.8 9.8 43 97-139 74-118 (141)
21 PF05982 DUF897: Domain of unk 88.8 4.3 9.4E-05 35.7 9.5 113 54-178 176-298 (327)
22 PRK10669 putative cation:proto 88.3 14 0.0003 34.4 13.1 63 97-166 282-349 (558)
23 PF03616 Glt_symporter: Sodium 87.9 12 0.00026 33.3 12.0 89 29-123 9-101 (368)
24 COG1346 LrgB Putative effector 87.4 13 0.00029 31.1 11.1 101 31-137 9-115 (230)
25 PF03956 DUF340: Membrane prot 86.4 6.7 0.00015 31.8 8.8 82 59-156 3-92 (191)
26 PLN03159 cation/H(+) antiporte 86.4 6.6 0.00014 38.6 10.2 22 144-165 375-396 (832)
27 PF03601 Cons_hypoth698: Conse 85.7 22 0.00048 30.8 12.2 109 50-169 22-133 (305)
28 COG4651 RosB Kef-type K+ trans 85.6 9.6 0.00021 33.7 9.7 127 32-174 11-140 (408)
29 TIGR03802 Asp_Ala_antiprt aspa 85.2 17 0.00038 34.1 12.0 108 35-160 14-130 (562)
30 PRK04288 antiholin-like protei 83.9 24 0.00053 29.6 11.8 49 88-137 64-118 (232)
31 COG2855 Predicted membrane pro 83.9 30 0.00066 30.6 12.8 93 53-156 36-129 (334)
32 PRK01658 holin-like protein; V 83.6 17 0.00036 27.4 10.0 40 98-137 72-113 (122)
33 TIGR00210 gltS sodium--glutama 82.1 27 0.00059 31.5 11.5 101 34-136 222-327 (398)
34 TIGR00210 gltS sodium--glutama 80.1 45 0.00099 30.1 12.6 91 29-125 9-103 (398)
35 COG0475 KefB Kef-type K+ trans 77.8 52 0.0011 29.4 12.6 62 97-165 279-345 (397)
36 PRK01821 hypothetical protein; 77.7 29 0.00064 26.6 10.2 41 98-138 77-119 (133)
37 PF05145 AmoA: Putative ammoni 76.2 52 0.0011 28.6 12.3 35 33-72 158-192 (318)
38 PF03390 2HCT: 2-hydroxycarbox 74.0 71 0.0015 29.1 11.8 142 19-174 237-391 (414)
39 PRK12460 2-keto-3-deoxyglucona 69.2 50 0.0011 29.0 9.3 58 100-164 205-273 (312)
40 TIGR00783 ccs citrate carrier 67.7 90 0.002 27.8 11.1 120 42-174 194-324 (347)
41 PF05684 DUF819: Protein of un 65.7 1E+02 0.0022 27.6 11.1 80 52-138 23-106 (378)
42 TIGR00659 conserved hypothetic 64.9 82 0.0018 26.3 11.5 32 106-137 81-112 (226)
43 TIGR00698 conserved hypothetic 64.9 1E+02 0.0022 27.3 12.0 95 52-155 29-125 (335)
44 PF03788 LrgA: LrgA family; I 64.0 22 0.00048 25.5 5.2 37 97-133 56-94 (96)
45 PF03818 MadM: Malonate/sodium 59.6 41 0.00089 22.3 5.4 20 52-71 37-56 (60)
46 COG1380 Putative effector of m 59.5 77 0.0017 24.2 9.3 42 97-138 72-115 (128)
47 PRK04972 putative transporter; 57.0 1.4E+02 0.003 28.2 10.5 88 39-136 20-113 (558)
48 PF03616 Glt_symporter: Sodium 55.8 1.5E+02 0.0032 26.3 13.4 89 41-132 235-325 (368)
49 TIGR00945 tatC Twin arginine t 55.5 87 0.0019 25.5 8.0 24 145-168 183-206 (215)
50 PF04172 LrgB: LrgB-like famil 55.4 1.2E+02 0.0026 25.1 10.1 49 88-137 48-102 (215)
51 PF06826 Asp-Al_Ex: Predicted 54.7 1.1E+02 0.0023 24.3 11.4 94 39-137 5-108 (169)
52 PF05684 DUF819: Protein of un 54.6 1.6E+02 0.0035 26.3 11.7 51 97-155 277-328 (378)
53 PF03169 OPT: OPT oligopeptide 54.3 2E+02 0.0042 27.2 11.8 22 118-139 473-494 (624)
54 COG3329 Predicted permease [Ge 54.0 66 0.0014 28.5 7.2 108 53-174 15-129 (372)
55 COG3180 AbrB Putative ammonia 48.8 2E+02 0.0043 25.7 12.6 50 20-74 178-227 (352)
56 PRK10921 twin-arginine protein 47.2 1.8E+02 0.0038 24.6 8.9 22 146-167 195-216 (258)
57 KOG3787 Glutamate/aspartate an 44.6 93 0.002 28.9 7.0 83 53-137 18-112 (507)
58 KOG1650 Predicted K+/H+-antipo 43.7 1E+02 0.0022 30.4 7.6 18 144-161 360-377 (769)
59 TIGR02230 ATPase_gene1 F0F1-AT 41.8 1.1E+02 0.0025 22.2 5.9 35 36-70 56-90 (100)
60 TIGR00808 malonate_madM malona 40.7 2.2E+02 0.0047 23.9 12.0 120 51-175 37-175 (254)
61 COG5336 Uncharacterized protei 40.5 1.4E+02 0.0031 22.3 6.3 55 16-70 35-90 (116)
62 PF12911 OppC_N: N-terminal TM 38.7 54 0.0012 20.4 3.5 24 106-129 10-33 (56)
63 TIGR03082 Gneg_AbrB_dup membra 37.4 1.9E+02 0.0041 22.2 12.0 100 36-152 4-109 (156)
64 PRK04972 putative transporter; 36.9 3.7E+02 0.0079 25.3 10.7 131 27-174 381-527 (558)
65 PLN02715 lipid phosphate phosp 36.7 71 0.0015 28.2 4.9 64 7-70 73-137 (327)
66 PRK03818 putative transporter; 36.1 3.7E+02 0.0081 25.2 12.7 14 58-71 34-47 (552)
67 CHL00182 tatC Sec-independent 34.9 2.7E+02 0.0059 23.3 9.0 25 145-169 204-229 (249)
68 PRK10711 hypothetical protein; 34.2 2.8E+02 0.0061 23.2 10.4 49 88-137 59-113 (231)
69 COG2431 Predicted membrane pro 32.5 3.4E+02 0.0073 23.7 8.2 84 57-155 109-198 (297)
70 COG0805 TatC Sec-independent p 29.0 30 0.00065 29.4 1.3 23 145-167 198-220 (255)
71 KOG3826 Na+/H+ antiporter [Ino 28.6 82 0.0018 26.7 3.7 58 101-164 172-230 (252)
72 PF00999 Na_H_Exchanger: Sodiu 27.5 34 0.00075 29.6 1.4 57 101-164 277-337 (380)
73 TIGR00698 conserved hypothetic 27.2 4.4E+02 0.0094 23.3 10.1 29 97-125 290-319 (335)
74 COG3493 CitS Na+/citrate sympo 26.3 5.1E+02 0.011 23.7 10.9 30 145-174 377-410 (438)
75 COG2985 Predicted permease [Ge 24.5 1.3E+02 0.0027 28.4 4.5 152 1-165 341-503 (544)
76 PRK03818 putative transporter; 24.1 6.1E+02 0.013 23.8 10.8 16 57-72 403-418 (552)
77 PF11166 DUF2951: Protein of u 23.9 1E+02 0.0022 22.4 3.0 20 116-135 75-94 (98)
78 PF11694 DUF3290: Protein of u 23.9 1.9E+02 0.0042 22.5 4.9 32 35-66 27-58 (149)
79 PF05915 DUF872: Eukaryotic pr 23.3 3.2E+02 0.0069 20.3 5.8 15 53-67 72-86 (115)
80 PF00902 TatC: Sec-independent 22.0 64 0.0014 26.2 2.0 24 145-168 188-211 (215)
81 PHA03099 epidermal growth fact 21.9 1.5E+02 0.0032 22.9 3.7 28 29-56 106-133 (139)
82 PRK05349 Na(+)-translocating N 21.6 1E+02 0.0022 28.1 3.2 18 149-166 324-341 (405)
83 COG3329 Predicted permease [Ge 21.3 5.1E+02 0.011 23.1 7.4 112 53-171 215-331 (372)
84 TIGR00400 mgtE Mg2+ transporte 21.2 3.4E+02 0.0073 24.6 6.7 21 53-73 284-304 (449)
85 PF10821 DUF2567: Protein of u 21.2 3.8E+02 0.0083 21.4 6.1 51 17-70 38-90 (167)
No 1
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-35 Score=266.84 Aligned_cols=176 Identities=39% Similarity=0.688 Sum_probs=158.1
Q ss_pred ccCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccccccccccc--cccc
Q 037375 7 QISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNI--RYSF 84 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~--~~~~ 84 (183)
+++++-+-+++++++||++++++++++++++++++.+|+++++|++++||+++.+++|+++|.+.++......- .+..
T Consensus 15 ~~~~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~ 94 (575)
T KOG1965|consen 15 EIATDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRIL 94 (575)
T ss_pred hhccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeE
Confidence 44544445588999999999999999999999999999999999999999999999999999998876543321 1234
Q ss_pred ccchhHHHHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhcc
Q 037375 85 SFNELICSVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALIS 159 (183)
Q Consensus 85 ~~~~~~f~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiS 159 (183)
.|+|+.|+.++ +||+ ||+++ +.|+||+++|+.+|++||.||+.++|...|+.+......+++|.+|++|||++|
T Consensus 95 ~f~~~~ff~vL-LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliS 173 (575)
T KOG1965|consen 95 VFSPDLFFLVL-LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALIS 173 (575)
T ss_pred EecccHHHHHh-hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhc
Confidence 78999999999 9998 99999 999999999999999999999999999999987655678999999999999999
Q ss_pred CccHHHHHHHHhhcC--cccceeccC
Q 037375 160 ATDPITVLSIFQGTC--ALLFCLLTG 183 (183)
Q Consensus 160 aTDPVAVlai~~~l~--a~l~~lvfg 183 (183)
|||||+|+|||+|++ ++||.||||
T Consensus 174 ATDPVtvLaIfnel~vd~~Ly~LVFG 199 (575)
T KOG1965|consen 174 ATDPVTVLAIFNELGVDPKLYTLVFG 199 (575)
T ss_pred ccCchHHHHHHHHhCCCcceeeeeec
Confidence 999999999999998 699999998
No 2
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=228.92 Aligned_cols=157 Identities=26% Similarity=0.427 Sum_probs=139.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH
Q 037375 21 EQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI 100 (183)
Q Consensus 21 ~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i 100 (183)
+|-.....+.+|+++..++++..|..+ +-...+|||++++++|+++|.+.+.....+ ...+++++||+++ ||||
T Consensus 36 ~~V~~p~vi~lwil~asLaKi~fh~~~-~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~----~~~L~s~vFFlyL-LPPI 109 (670)
T KOG1966|consen 36 EHVHIPYVITLWILVASLAKIVFHLMP-KLRKIVPESCLLIILGLVLGGIIKALATIA----PFFLESDVFFLYL-LPPI 109 (670)
T ss_pred hhccCchhhHHHHHHHHHHHhcccccc-cccccCchhHHHHHHHHHHHHHHHhhhccc----cccccccchhhhh-cCHH
Confidence 566678899999999999999999863 333669999999999999999887665422 3577899999999 9999
Q ss_pred ----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 101 ----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMF-VMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 101 ----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~-~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
||.++ |.|++|+++|+++|++||+++++.+|..+|.+++.+ ...+.++.+-++|||++||+|||||+|+|+|+|
T Consensus 110 vlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih 189 (670)
T KOG1966|consen 110 VLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH 189 (670)
T ss_pred HhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc
Confidence 99999 999999999999999999999999999999987754 233588999999999999999999999999996
Q ss_pred --cccceeccC
Q 037375 175 --ALLFCLLTG 183 (183)
Q Consensus 175 --a~l~~lvfg 183 (183)
+.||++|||
T Consensus 190 VNe~LfI~VFG 200 (670)
T KOG1966|consen 190 VNEVLFIIVFG 200 (670)
T ss_pred cccEEEeeeeh
Confidence 899999998
No 3
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=1.4e-26 Score=213.16 Aligned_cols=157 Identities=25% Similarity=0.405 Sum_probs=135.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH
Q 037375 21 EQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI 100 (183)
Q Consensus 21 ~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i 100 (183)
||-+....+.+|+++.+++++..|+. +++.+++|++++++++|+++|.+...... .+..+++|++|+.++ ||||
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~lP~s~llil~GlllG~i~~~~~~----~~~~~l~~~lf~~~~-LPpI 76 (559)
T TIGR00840 3 EHVQSPYEFILWILLASLAKIGFHLT-HKVIRAVPESVLLIVYGLLVGGIIKASPH----IDPPTLDSSYFFLYL-LPPI 76 (559)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHHH-HhhcccCCHHHHHHHHHHHHHHHHHcCCC----CccCCcCHHHHHHHH-HHHH
Confidence 45566788999999999999988875 56678899999999999999987544322 124578999999999 9998
Q ss_pred ----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cccCCHHHHHHhhhhccCccHHHHHHHHhhc
Q 037375 101 ----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFV--MYRLPFVECLMFGALISATDPITVLSIFQGT 173 (183)
Q Consensus 101 ----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~--~~~~~l~~allfGAiiSaTDPVAVlai~~~l 173 (183)
||+++ |.||+|+++|+.+|++||++|++++|..+|++..... ..++||.+|++|||++||||||||++++|+.
T Consensus 77 lFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~ 156 (559)
T TIGR00840 77 VLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEY 156 (559)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhc
Confidence 99999 9999999999999999999999999999998754211 2367999999999999999999999999998
Q ss_pred C--cccceeccC
Q 037375 174 C--ALLFCLLTG 183 (183)
Q Consensus 174 ~--a~l~~lvfg 183 (183)
+ ++++.++||
T Consensus 157 ~v~~~L~~ll~g 168 (559)
T TIGR00840 157 HVNEKLYIIIFG 168 (559)
T ss_pred CCCcchhhheeh
Confidence 7 799999987
No 4
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.77 E-value=4e-18 Score=156.30 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH----HHhhc-hhHH
Q 037375 35 MLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI----LFSWQ-KPFF 109 (183)
Q Consensus 35 ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i----g~~l~-~~f~ 109 (183)
++..+.....+.+ | .++|++.++++.|+++|...... .+++||++++.++ +||+ |++++ +.+|
T Consensus 6 l~~~~~~~~~l~~--r-~~lP~~v~lil~Gi~lg~~~~~~--------~~~~~~~~~~~~~-Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 6 LVMLATAVAVTVK--F-IRLPYPIALILAGLLLGLAGLLP--------EVPLDREIVLFLF-LPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHhc--c-cCCCHHHHHHHHHHHHHhccccC--------CCCCCHHHHHHHH-HHHHHHHHHhcCCHHHHH
Confidence 3333444445432 2 58999999999999999754321 3468899888777 8988 99999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC--cccceeccC
Q 037375 110 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC--ALLFCLLTG 183 (183)
Q Consensus 110 ~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~--a~l~~lvfg 183 (183)
||+++++.+|++|+++++..+|...|++ .++||..|+++||++|||||++|.+++|+.+ +++..++.|
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~------~~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~g 143 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWI------LGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEG 143 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhh
Confidence 9999999999999999999999999875 4799999999999999999999999999876 466665544
No 5
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.1e-17 Score=147.22 Aligned_cols=142 Identities=20% Similarity=0.352 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHH----
Q 037375 26 GVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMI---- 100 (183)
Q Consensus 26 ~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~i---- 100 (183)
.+.++...+++.++...+++.++ ..+|+....++.|++.|... ...+ ....++++.+..++ +||+
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~---l~~~~i~~~ll~g~i~g~~~l~~~~------~~~~~~~el~~~l~-l~ilLf~~ 74 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGR---LLLPEIPLLLLLGLLGGPPGLNLIS------PDLELDPELFLVLF-LAILLFAG 74 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHhhhhhcccc------ccccCChHHHHHHH-HHHHHHHh
Confidence 45566666677777777787644 35677777777777777432 2221 13467888888777 8887
Q ss_pred HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC--ccc
Q 037375 101 LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC--ALL 177 (183)
Q Consensus 101 g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~--a~l 177 (183)
|++++ +++||++++|..+++.++++|++++|...|++. +++||..|+++||++||||||++.+++|+.+ +++
T Consensus 75 g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~-----~~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri 149 (429)
T COG0025 75 GLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLL-----PGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRI 149 (429)
T ss_pred HhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHH
Confidence 89999 999999999999999999999999999999973 4899999999999999999999999999876 566
Q ss_pred ceecc
Q 037375 178 FCLLT 182 (183)
Q Consensus 178 ~~lvf 182 (183)
-+++.
T Consensus 150 ~~iL~ 154 (429)
T COG0025 150 RTILE 154 (429)
T ss_pred HHHHH
Confidence 55544
No 6
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.45 E-value=2.4e-12 Score=122.21 Aligned_cols=133 Identities=19% Similarity=0.275 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccc-ccccccccccccccchh----HHHHHHHHHHH-
Q 037375 27 VGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTN-ISNTETNIRYSFSFNEL----ICSVATCLLMI- 100 (183)
Q Consensus 27 ~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~-~~~~~~~~~~~~~~~~~----~f~~~l~LP~i- 100 (183)
....++..++++..+.+.++|++ .++|++.++++.|+++|.... ..+.. + ...++. +.-+.++.-++
T Consensus 13 l~~~~lG~~lll~~l~s~~lkeR--l~Ls~~~v~Ll~GiilGP~~l~~idP~----~-~g~~d~i~leIteIvL~I~LFa 85 (810)
T TIGR00844 13 VAYSCVGIFSSIFSLVSLFVKEK--LYIGESMVASIFGLIVGPHCLNWFNPL----S-WGNTDSITLEISRILLCLQVFA 85 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHhhhhhhccCChh----h-cccchHHHHHHHHHHHHHHHHH
Confidence 34444455555555667666533 689999999999999997532 22210 0 011111 21122211222
Q ss_pred -HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHh
Q 037375 101 -LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ 171 (183)
Q Consensus 101 -g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~ 171 (183)
|.+++ +.++++|.++..++++++.++.++++...|++ ..+++|..|+++||+++|||||++.++++
T Consensus 86 ~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~L-----i~GL~~~~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 86 VSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWIL-----VPGLNFPASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHhhhcCCcHHHHHHHHh
Confidence 89999 99999999999999999999999999999986 35899999999999999999999999998
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.40 E-value=6e-12 Score=116.30 Aligned_cols=127 Identities=22% Similarity=0.409 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccch----hHHHHHHHHHHH----
Q 037375 29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNE----LICSVATCLLMI---- 100 (183)
Q Consensus 29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~----~~f~~~l~LP~i---- 100 (183)
++...++++++.+.+.+.+| .++|...+.++.|+++|.-... .+++++ +.+.-+ +++++
T Consensus 8 ll~~~~ll~l~~~~~~l~~r---~~~P~ll~~il~GillGp~~lg---------~i~~~~~~~~~~i~~l-~L~~iLF~~ 74 (562)
T PRK05326 8 LLIGALLLLLSILASRLSSR---LGIPSLLLFLAIGMLAGEDGLG---------GIQFDNYPLAYLVGNL-ALAVILFDG 74 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhCccccC---------CcccCcHHHHHHHHHH-HHHHHHHcC
Confidence 33445566677777777643 4899999999999999963211 011111 122222 24544
Q ss_pred HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 101 LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 101 g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
|++++ +.+|+++++++.+|++|+++++..+|...++. .+++|..|+++||++|+|||++|.+++++.+
T Consensus 75 Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l------~g~~~~~alllgai~s~Td~a~v~~iL~~~~ 143 (562)
T PRK05326 75 GLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL------LGLDWLEGLLLGAIVGSTDAAAVFSLLRGKG 143 (562)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHhhhhccCchHHHHHHHhccC
Confidence 99999 99999999999999999999999999888775 3789999999999999999999999999876
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.2e-11 Score=105.90 Aligned_cols=123 Identities=22% Similarity=0.389 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHH---HHHHHH----HHhhc-
Q 037375 34 MMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVA---TCLLMI----LFSWQ- 105 (183)
Q Consensus 34 ~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~---l~LP~i----g~~l~- 105 (183)
++.+.+++.+.+.. | .++|--.+++.+|++.|. +++ ..++||..-+-+. ++|-.| |+.++
T Consensus 14 vlvivsif~s~~ss--r-fGvP~LllFl~iGm~aG~--------dGl-g~I~fdNy~~Ay~vg~lALaiILfdgG~~T~l 81 (574)
T COG3263 14 VLVIVSIFSSLISS--R-FGVPLLLLFLSIGMLAGV--------DGL-GGIEFDNYPFAYMVGNLALAIILFDGGFGTQL 81 (574)
T ss_pred HHHHHHHHHHHHHH--H-cCchHHHHHHHHHHHcCC--------Ccc-cccccCccHHHHHHHHHHHHHHhhcCccCCcH
Confidence 45555666666643 2 589999999999999985 111 1234443222222 213333 89999
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
+.||...+|-+.+|++||++|+..+|...+|. .+++|.+++++||++.+||++||.+++++.|
T Consensus 82 ss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l------l~l~wle~~LiGAiVgSTDAAAVF~lL~~~n 144 (574)
T COG3263 82 SSFRVAAGPALSLATLGVLITSGLTGVAAAYL------LNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN 144 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence 99999999999999999999999999999997 5899999999999999999999999999876
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=98.87 E-value=3.4e-08 Score=83.12 Aligned_cols=122 Identities=11% Similarity=0.208 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHH-HHhhc-hhHHhhHHH
Q 037375 38 LSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMI-LFSWQ-KPFFSNFGA 114 (183)
Q Consensus 38 l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~i-g~~l~-~~f~~n~~~ 114 (183)
++.+.+.+.|+ .++|+.+..++.|+++|... +..+.. +..+.=.++-..+ +-.. |+++| +++||+.+.
T Consensus 3 ~a~~~~~l~~~---l~lP~~v~~il~GillGp~~lg~i~~~----~~~~~l~~igl~~--llF~~Gl~~d~~~l~~~~~~ 73 (273)
T TIGR00932 3 AAVLAVPLSRR---LGIPSVLGYLLAGVLIGPSGLGLISNV----EGVNHLAEFGVIL--LMFLIGLELDLERLWKLRKA 73 (273)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHhCcccccCCCCh----HHHHHHHHHHHHH--HHHHHHhCCCHHHHHHHHHH
Confidence 45566777643 57999999999999999632 211110 0001001111111 1111 99999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 115 IVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 115 Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
....+..++.++.+.+|...++. .++++..|+++|+++|+|||..+..+++|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~ 127 (273)
T TIGR00932 74 AFGVGVLQVLVPGVLLGLLLGHL------LGLALGAAVVIGIILALSSTAVVVQVLKERG 127 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Confidence 99999999999878778765554 3789999999999999999999999999886
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=98.65 E-value=5e-09 Score=91.48 Aligned_cols=122 Identities=19% Similarity=0.327 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH----HHhhc-hhHHhhHH
Q 037375 39 SFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI----LFSWQ-KPFFSNFG 113 (183)
Q Consensus 39 ~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i----g~~l~-~~f~~n~~ 113 (183)
+.+..+..| | .++|+....++.|+++|......-+.+ +-+.+.+..+- ++.+ |+++| +.+||+++
T Consensus 8 ~~~~~~l~~--r-~~iP~~i~~i~~Gi~lg~~~~~~~~~~------~~~~~~l~~i~-l~~llF~~G~~~d~~~l~~~~~ 77 (380)
T PF00999_consen 8 AFVAGILFR--R-LGIPSIIGYILVGIVLGPSGLGLLEPD------NPSFELLAEIG-LAFLLFEAGLELDIKELRRNWR 77 (380)
T ss_dssp -------------------------------------------------S-SSHHHH-S--SSHHHHTTGGGG-------
T ss_pred HHHHHHHHH--H-hCCCHHHHHHHheeehhhhhhhhccch------hhHHHHHHHHH-HHHHHHHHHHhhcccccccccc
Confidence 434444443 2 569999999999999998653311100 01112222222 3333 99999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhc
Q 037375 114 AIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGT 173 (183)
Q Consensus 114 ~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l 173 (183)
+.+..+..++.++...++...++.. ...++++.+++++|++.++|||+.+.++++|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~ 134 (380)
T PF00999_consen 78 RALALGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKEL 134 (380)
T ss_dssp ---------------------------------------TTHHHHTT--HHHHHHHH-HH
T ss_pred cccccccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhh
Confidence 9999999999999888788777411 13589999999999999999999999999654
No 11
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.19 E-value=3.5e-05 Score=72.24 Aligned_cols=126 Identities=12% Similarity=0.169 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcc-ccccccccccccccccchhHHHHHHHHH-HHHHhhc-hhHH
Q 037375 33 IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSAL-TNISNTETNIRYSFSFNELICSVATCLL-MILFSWQ-KPFF 109 (183)
Q Consensus 33 i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i-~~~~~~~~~~~~~~~~~~~~f~~~l~LP-~ig~~l~-~~f~ 109 (183)
++++..+.+..++.|+ .++|..+..++.|+++|.- .......+ .+..=.++ -.++ +. .+|.+++ ++++
T Consensus 11 ~~~l~~a~~~~~l~~r---l~~p~ilg~ilaGillGP~~lg~i~~~~----~i~~lael-Gvv~-LLF~iGLel~~~~l~ 81 (601)
T PRK03659 11 VLFLFAAVVAVPLAQR---LGIGAVLGYLLAGIAIGPWGLGFISDVD----EILHFSEL-GVVF-LMFIIGLELNPSKLW 81 (601)
T ss_pred HHHHHHHHHHHHHHHH---hCCChHHHHHHHHHHhccccccCCCcHH----HHHHHHHH-HHHH-HHHHHHhcCCHHHHH
Confidence 4455566666777653 5799999999999999962 22211100 01100111 1111 11 1299999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 110 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 110 ~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
+..+.++.++..++++++.+.+...++. +++|..++++|..++.|+++-+..+++|.+
T Consensus 82 ~~~~~~~~~g~~~v~~t~~~~~~~~~~~-------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~ 139 (601)
T PRK03659 82 QLRRSIFGVGAAQVLLSAAVLAGLLMLT-------DFSWQAAVVGGIGLAMSSTAMALQLMREKG 139 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999988777766553 678999999999999999999999999986
No 12
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.15 E-value=4.7e-05 Score=71.66 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhHHHHHHHHHHHHHhhc-hh
Q 037375 30 LLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KP 107 (183)
Q Consensus 30 ~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~ 107 (183)
.-.++++..+.+...+.|+ .++|.-+..++.|+++|.-. ...... +.+..=.++-..++ +=.+|.+++ ++
T Consensus 8 ~~~~~~l~~a~i~~~l~~r---l~lp~vlgyilaGillGP~~lg~i~~~----~~i~~laelGvv~L-lF~iGLEl~~~~ 79 (621)
T PRK03562 8 IQALIYLGAAVLIVPIAVR---LGLGSVLGYLIAGCIIGPWGLRLVTDV----ESILHFAEFGVVLM-LFVIGLELDPQR 79 (621)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCChHHHHHHHHHHhCcccccCCCCH----HHHHHHHHHHHHHH-HHHHHhCcCHHH
Confidence 3344566667777888753 57999999999999999632 211110 00110012211111 112299999 99
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 108 FFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 108 f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
+++..+.++.++...+.+++...+...+++ +++|..++++|+.++.|.+.-++.+++|.+
T Consensus 80 l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~-------g~~~~~al~ig~~la~SStaiv~~~L~e~~ 139 (621)
T PRK03562 80 LWKLRRSIFGGGALQMVACGGLLGLFCMLL-------GLRWQVALLIGLGLALSSTAIAMQAMNERN 139 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999887776665553 688999999999999999998999999876
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.98 E-value=0.0002 Score=66.32 Aligned_cols=126 Identities=18% Similarity=0.278 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccccccccccccchhH--HHHHHHHHH-HHHhhc-
Q 037375 31 LQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTETNIRYSFSFNELI--CSVATCLLM-ILFSWQ- 105 (183)
Q Consensus 31 ~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~~~~~~~~~~~~~--f~~~l~LP~-ig~~l~- 105 (183)
.+...+..+.+..++.|+ .++|.-+..++.|+++|... +.... . +.-+.+ +-.++ +.. +|.+++
T Consensus 10 ~~~~~l~~a~~~~~l~~r---l~~P~ivg~IlaGillGp~~lg~~~~------~-~~~~~la~lGli~-llF~~Gle~d~ 78 (558)
T PRK10669 10 TIVGGLVLAFILGMLANR---LRISPLVGYLLAGVLAGPFTPGFVAD------T-KLAPELAELGVIL-LMFGVGLHFSL 78 (558)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHhhCccccccccc------h-HHHHHHHHHHHHH-HHHHhHhcCCH
Confidence 335556667777888753 57999999999999999732 21110 0 111111 11111 111 299999
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
+.++++.......+..+++.+ ..++...++. .++++..++.+|+++|.|.+..|..+++|.+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~ 140 (558)
T PRK10669 79 KDLMAVKSIAIPGAIAQIAVA-TLLGMALSAV------LGWSLMTGIVFGLCLSTASTVVLLRALEERQ 140 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999887654444444444443 3444444332 3689999999999999999999999999876
No 14
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.97 E-value=0.00023 Score=62.59 Aligned_cols=123 Identities=22% Similarity=0.330 Sum_probs=88.8
Q ss_pred HHHHHHHhcccccCchhHHHHHHhhHhhccc-ccccccc-ccccccccchhHHHHHHHHHHH--HHhhc-hhHHhhHHHH
Q 037375 41 ILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTET-NIRYSFSFNELICSVATCLLMI--LFSWQ-KPFFSNFGAI 115 (183)
Q Consensus 41 l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~~-~~~~~~~~~~~~f~~~l~LP~i--g~~l~-~~f~~n~~~I 115 (183)
+.+.++|.| ..+.|+.+..+.|+++|.-. +..++.. +-.+. +..|+-=.++|.-.+ +.+++ +++.+||..+
T Consensus 27 l~S~yikek--LllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~--it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si 102 (467)
T KOG4505|consen 27 LASLYIKEK--LLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDY--ITYEISRVVLCVQVFAVAMELPRAYMLEHWRSI 102 (467)
T ss_pred HHHHHHHHh--HhccchHHhhhhheeechhhhhhcCCccccCcch--hhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHH
Confidence 345555543 67999999999999999743 3322210 00001 112222233333334 88999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhh
Q 037375 116 VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQG 172 (183)
Q Consensus 116 l~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~ 172 (183)
..+-.+-..+-.++.+...|.+ .+++++..+++.+|.+.||||+-..++.++
T Consensus 103 ~vlllpVmi~gwlvs~~fvy~l-----~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~ 154 (467)
T KOG4505|consen 103 FVLLLPVMIIGWLVSFGFVYAL-----IPNLNFLTSLLIAACITATDPILSSSIVGG 154 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHccCCchhHHHHHhcC
Confidence 9888777888888888889887 469999999999999999999999888874
No 15
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.89 E-value=0.00021 Score=63.90 Aligned_cols=133 Identities=21% Similarity=0.331 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhc-cccccccccccccccccchhHHHHHHHHHHHHHhhc-h
Q 037375 29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSA-LTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-K 106 (183)
Q Consensus 29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~-i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~ 106 (183)
+.....++..+.+.+++.|| .++|.-...++.|+++|. ......+.+ +.+++=.|+=..++ +..+|.+.| +
T Consensus 8 l~~~~iiL~~a~i~~~l~~r---l~lp~vlg~llaGiilGp~~~~~~~~~~---~~i~~laelGvi~L-lF~~GLE~~~~ 80 (397)
T COG0475 8 LLQLLILLLVAVILGPLFKR---LGLPPVLGYLLAGIILGPWGLLLIIESS---EIIELLAELGVVFL-LFLIGLEFDLE 80 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHhcCcccccccCCch---HHHHHHHHHhHHHH-HHHHHHCcCHH
Confidence 34455566777788888754 579999999999999997 221111111 12222223222222 223399999 9
Q ss_pred hHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 107 PFFSNFGAI-VTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 107 ~f~~n~~~I-l~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
++||+.+.+ ...+..+..... ..+...+.. ..++++..++..|++++.|...-+..+++|.|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-----~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~ 143 (397)
T COG0475 81 RLKKVGRSVGLGVAQVGLTAPF-LLGLLLLLG-----ILGLSLIAALFLGAALALSSTAIVLKILMELG 143 (397)
T ss_pred HHHHhchhhhhhHHHHHHHHHH-HHHHHHHHH-----HhccChHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999995 344433333321 222222210 14799999999999999999999999999987
No 16
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.09 E-value=0.016 Score=56.53 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccc-cccccc-cccc---c--ccccchhHHHHHHHHHHH-HHhh
Q 037375 33 IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALT-NISNTE-TNIR---Y--SFSFNELICSVATCLLMI-LFSW 104 (183)
Q Consensus 33 i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~-~~~~~~-~~~~---~--~~~~~~~~f~~~l~LP~i-g~~l 104 (183)
.++++++.+..+++|+ .+.|.-+.-++.|+++|.-. ...... +... . .++.=.++ -+++ +..+ |.++
T Consensus 49 ~lil~~a~l~~~ll~r---l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~l-Glil-lmFliGLE~ 123 (832)
T PLN03159 49 TLVVVTTRLLVFILKP---FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANL-GLLY-FLFLVGVEM 123 (832)
T ss_pred HHHHHHHHHHHHHHHh---cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHH-HHHH-HHHHHHHcC
Confidence 4455666677777653 47999999999999999622 211100 0000 0 00000111 1111 1112 9999
Q ss_pred c-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-CCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 105 Q-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYR-LPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 105 ~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~-~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
| +.+||+.+..+..+..+.++.........+++.. ...+ .....++.+|..+|.|...-+..+++|++
T Consensus 124 Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~--~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elk 193 (832)
T PLN03159 124 DISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ--VSRNVHQGTFILFLGVALSVTAFPVLARILAEIK 193 (832)
T ss_pred cHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccchhHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 9 9999999999999998888865443333333311 0111 12345678899999998888888998876
No 17
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.66 E-value=3.1 Score=39.23 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=41.9
Q ss_pred HHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHH
Q 037375 92 SVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITV 166 (183)
Q Consensus 92 ~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAV 166 (183)
.-++ +|.+ |.++| +.+.+++..++.+....++.-...+.....+ .++++.+++.+|..+++.-..+.
T Consensus 267 ~~ll-l~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~-------~g~~~~~al~~g~~L~~~Gef~~ 338 (601)
T PRK03659 267 KGLL-LGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL-------YGLRSSERMQFAGVLSQGGEFAF 338 (601)
T ss_pred HHHH-HHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhccccHHH
Confidence 3444 5554 99999 8888887766554443333333333333332 47899999998888877665553
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.82 E-value=3.4 Score=39.17 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=42.0
Q ss_pred HHHHHHHHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHH
Q 037375 91 CSVATCLLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPIT 165 (183)
Q Consensus 91 f~~~l~LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVA 165 (183)
|..++ +|.+ |.++| ..+.+++..++.+.....+.-.+.+....++ .++++.+++.+|.++++--..+
T Consensus 269 f~~ll-l~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-------~g~~~~~a~~~gl~L~~~Gef~ 340 (621)
T PRK03562 269 FKGLL-LGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-------LGVPRKQRRWFAVLLGQGGEFA 340 (621)
T ss_pred HHHHH-HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHhccccHH
Confidence 33444 5554 99999 8888877776555443333333333333333 4788999999998888655544
No 19
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=90.81 E-value=3.2 Score=37.46 Aligned_cols=113 Identities=22% Similarity=0.197 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhc----ccccCchhHHHHHHhhHhhccccccccccccccccccc---hhHHHHHHHHHHHHHhhc-
Q 037375 34 MMLVLSFILGHVLRRH----KFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFN---ELICSVATCLLMILFSWQ- 105 (183)
Q Consensus 34 ~ll~l~~l~~~~~~~~----~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~---~~~f~~~l~LP~ig~~l~- 105 (183)
.+.++-.+.++++++| +..-+||++.-=.+..+++...+-.... +++|| ++.|++++ +--+|++-+
T Consensus 12 ~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~-----~~~fd~~l~~~fmliF-Fttiglsa~~ 85 (404)
T COG0786 12 ILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGV-----SLNFDTSLQDVFMLIF-FATIGLSASF 85 (404)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceE-----EEeCCcccccHHHHHH-HHHhccccch
Confidence 3334444555555433 3467999998877777777655422211 12333 36777777 666799988
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhccccCCHHHHHHhhhhc
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMV--TGILVYLGGVMFVMYRLPFVECLMFGALI 158 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~--~g~~~~~~~~~~~~~~~~l~~allfGAii 158 (183)
+.++|-.++..++-..+..+...- +|..+... .+++....++-|++-
T Consensus 86 ~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~------lgidpl~gllagsIs 134 (404)
T COG0786 86 KLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKL------LGLDPLIGLLAGSIS 134 (404)
T ss_pred hHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH------cCccHHHHHHhccee
Confidence 899999998887765555443332 22222221 356777777777654
No 20
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=89.69 E-value=5.7 Score=30.82 Aligned_cols=43 Identities=14% Similarity=-0.089 Sum_probs=34.7
Q ss_pred HHHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037375 97 LLMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGV 139 (183)
Q Consensus 97 LP~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~ 139 (183)
.|.- |.=.. ..+++++.+++.--+++|+++..++|....++.+
T Consensus 74 VPagVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r 118 (141)
T PRK04125 74 VPSGISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFILG 118 (141)
T ss_pred hhhHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 66556 7999999999999999999999999988877543
No 21
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=88.79 E-value=4.3 Score=35.70 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=74.6
Q ss_pred CchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH--H----HhhchhHHhhHHHHHHHHHHHHHHHH
Q 037375 54 LPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI--L----FSWQKPFFSNFGAIVTFAIFGTFLAS 127 (183)
Q Consensus 54 lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i--g----~~l~~~f~~n~~~Il~lA~~Gt~is~ 127 (183)
...++.+++-|+++|.+..-... .+.-.|-.+.|..++|+=.+ | .+++ ++|+.-+....++++.=++.+
T Consensus 176 ~~~sv~LLlGgliIG~~~g~~g~----~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~-~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 176 TNKSVVLLLGGLIIGFLAGPEGV----ESIKPFFVDLFKGVLCLFLLEMGLVAARRLR-DLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred cCchHHHHHHHHHHhheeCccch----hhccchhhccHHHHHHHHHHHhhHHHHHhhH-HHHhhhHHHHHHHHHHHHHHH
Confidence 45678899999999997643221 11113445677777655554 3 4444 889999999999988877776
Q ss_pred HHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHh----hcCcccc
Q 037375 128 MVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ----GTCALLF 178 (183)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~----~l~a~l~ 178 (183)
.+--...|+. +++...+.+++.+-++--=.||=+..| |.|+.+|
T Consensus 251 ~ig~~lg~~~-------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpsly 298 (327)
T PF05982_consen 251 LIGIGLGWLL-------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLY 298 (327)
T ss_pred HHHHHHHHHh-------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHH
Confidence 6555555543 788889999998876655455555554 4444444
No 22
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.31 E-value=14 Score=34.38 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHH
Q 037375 97 LLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITV 166 (183)
Q Consensus 97 LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAV 166 (183)
.|.+ |.++| ..+.++...++.+..+..+.-......... ..+.++.+++..|..+++.-..+.
T Consensus 282 ~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-------~~g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 282 AVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-------LFGHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCChhhHHHHHHHHhcccchHH
Confidence 5554 99999 888877655443322222222222212222 247889999999998887655443
No 23
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=87.94 E-value=12 Score=33.26 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchh---HHHHHHHHHHHHHhhc
Q 037375 29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNEL---ICSVATCLLMILFSWQ 105 (183)
Q Consensus 29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~---~f~~~l~LP~ig~~l~ 105 (183)
+.+..+++.++..+-.-.+--+...+|.++.-=+++.++....+.... -.+++|.. .++..+ +--+|++.+
T Consensus 9 l~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~-----~~~~f~~~l~~~lm~~f-F~~igL~~~ 82 (368)
T PF03616_consen 9 LALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGG-----ISISFDTSLQDFLMIIF-FTTIGLGAS 82 (368)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCc-----eEEEechhHHHHHHHHH-HHHHhhccc
Confidence 334444444444443222222457899998877776666544432221 12344433 333333 333477777
Q ss_pred -hhHHhhHHHHHHHHHHHH
Q 037375 106 -KPFFSNFGAIVTFAIFGT 123 (183)
Q Consensus 106 -~~f~~n~~~Il~lA~~Gt 123 (183)
+..+|-.+.+..+...++
T Consensus 83 ~~~lkkgg~~~~~~~~~~~ 101 (368)
T PF03616_consen 83 LKLLKKGGKAVLIFLLIAI 101 (368)
T ss_pred hhhHHhhHHHHHHHHHHHH
Confidence 777777766666554443
No 24
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.44 E-value=13 Score=31.12 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH---H--Hhhc
Q 037375 31 LQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI---L--FSWQ 105 (183)
Q Consensus 31 ~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i---g--~~l~ 105 (183)
+.+++-++....+..+ .+|+++.+-..+++...+++..+....-+-+ ...-+.+.....+ =|-. + ..-+
T Consensus 9 f~l~lTl~~y~~a~~l-~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~----~Y~~g~~~i~~lL-gPAtVAlAvPLYkq 82 (230)
T COG1346 9 FGLLLTLLAYFAAKRL-YKRTKSPFLNPLLVATVLLIAFLLLFGISYE----DYMKGGQWINFLL-GPATVALAVPLYKQ 82 (230)
T ss_pred HHHHHHHHHHHHHHHH-HHhcCCcccchHHHHHHHHHHHHHHcCCCHH----HHhcccHHHHHHH-HHHHHHHhhHHHHH
Confidence 3344444444444444 2344444444555555555554332111100 1111234444444 3433 2 2234
Q ss_pred -hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 106 -KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 106 -~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
+.+||||.+|+.=-++|+..+........+++
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~ 115 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF 115 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999888889888777666666665
No 25
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=86.43 E-value=6.7 Score=31.78 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=42.6
Q ss_pred HHHHHhhHhhccccccccccccccccccchhHHHHHHH--HHHHHHhhc------hhHHhhHHHHHHHHHHHHHHHHHHH
Q 037375 59 ASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATC--LLMILFSWQ------KPFFSNFGAIVTFAIFGTFLASMVT 130 (183)
Q Consensus 59 ~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~--LP~ig~~l~------~~f~~n~~~Il~lA~~Gt~is~~~~ 130 (183)
..++.|++.|....... +..++.....+. +-.+|.++. |++++.-++.+..++ .+++.++..
T Consensus 3 ~~li~Gi~lG~~~~~~~---------~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl-~tIlGSllg 72 (191)
T PF03956_consen 3 IALILGILLGYFLRPPF---------SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPL-ATILGSLLG 72 (191)
T ss_pred eeHHHHHHHHHHhcccc---------cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 34677888888654321 111222222221 112266543 344433345554443 556666666
Q ss_pred HHHHHHHhhhhccccCCHHHHHHhhh
Q 037375 131 GILVYLGGVMFVMYRLPFVECLMFGA 156 (183)
Q Consensus 131 g~~~~~~~~~~~~~~~~l~~allfGA 156 (183)
|.....+ .++|+.+|+..||
T Consensus 73 g~l~~~l------l~~~~~~~lav~s 92 (191)
T PF03956_consen 73 GLLASLL------LGLSLKESLAVAS 92 (191)
T ss_pred HHHHHHH------hcCCHHHHHHHHc
Confidence 6666654 3778888777665
No 26
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=86.39 E-value=6.6 Score=38.64 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=18.0
Q ss_pred ccCCHHHHHHhhhhccCccHHH
Q 037375 144 YRLPFVECLMFGALISATDPIT 165 (183)
Q Consensus 144 ~~~~l~~allfGAiiSaTDPVA 165 (183)
.++|+.+++..|.++++.-=+.
T Consensus 375 ~g~~~~eal~lG~lm~~kG~~~ 396 (832)
T PLN03159 375 YTMPFREGITLGFLMNTKGLVE 396 (832)
T ss_pred hCCCHHHHHHHHHHHhcccHHH
Confidence 4899999999999998865444
No 27
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=85.74 E-value=22 Score=30.85 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=59.7
Q ss_pred ccccCchhHHHHHHhhHhhc-cccccccccccccccccchhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHH
Q 037375 50 KFYYLPEASASLLIGLIVSA-LTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLAS 127 (183)
Q Consensus 50 ~~~~lp~s~~lil~Gl~~G~-i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~ 127 (183)
....++.....+++|++++- ....... .....++..+.+.-.= .-.+|.+++ .+..+--...+....+.+..+.
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~---~~~Gi~~~~k~~Lr~g-IVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~ 97 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPAR---FKPGIKFSSKKLLRLG-IVLLGFRLSFSDILALGWKGLLIIIIVVILTF 97 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHH---HHhHHHHHHHHHHHHH-HHHHCccccHHHHHHhCccHHHHHHHHHHHHH
Confidence 45789999999999999994 4433221 1122344433322111 123399999 8888765555544444333322
Q ss_pred HHHHHHHHHHh-hhhccccCCHHHHHHhhhhccCccHHHHHHH
Q 037375 128 MVTGILVYLGG-VMFVMYRLPFVECLMFGALISATDPITVLSI 169 (183)
Q Consensus 128 ~~~g~~~~~~~-~~~~~~~~~l~~allfGAiiSaTDPVAVlai 169 (183)
...++++ + ..+++...+.+.|+=.|==+.-|+.|+
T Consensus 98 ----~~~~~lg~r---~~~l~~~~~~Lia~GtsICG~SAi~A~ 133 (305)
T PF03601_consen 98 ----LLTYWLGRR---LFGLDRKLAILIAAGTSICGASAIAAT 133 (305)
T ss_pred ----HHHHHHHHH---HhCCCHHHHHHHHhhcccchHHHHHHH
Confidence 2344444 3 357788777777744333333333333
No 28
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.58 E-value=9.6 Score=33.72 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH--HHhhc-hhH
Q 037375 32 QIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI--LFSWQ-KPF 108 (183)
Q Consensus 32 ~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i--g~~l~-~~f 108 (183)
....++++.+.+.+..| .++|+-+..++.|++.|........++ ++.+++--+-..+..+ |.+.+ |++
T Consensus 11 iv~gl~lAFl~G~lA~r---lrlsPLVGyL~AGv~~gpftpGFvad~------~La~~LAelGViLLmFgvGLhfslkdL 81 (408)
T COG4651 11 IVGGLVLAFLLGALANR---LRLSPLVGYLLAGVLAGPFTPGFVADQ------TLAPELAELGVILLMFGVGLHFSLKDL 81 (408)
T ss_pred HHHHHHHHHHHHHHHHh---cCCCchHHHHHHHHhcCCCCCCcccch------hHHHHHHHhhHHHHHHhcchheeHHHH
Confidence 34567778788887533 469999999999999997543221111 3344442222213333 77777 776
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 109 FSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
... +. .|+.|.+.+.......-+.+. +..+|++...++||=.+|--..|-.+--++|-+
T Consensus 82 Lav-k~---iAipgAl~qia~at~lg~gL~---~~lgws~~~glvfGlaLS~aSTVvllraLqEr~ 140 (408)
T COG4651 82 LAV-KA---IAIPGALAQIALATLLGMGLS---SLLGWSFGTGIVFGLALSVASTVVLLRALEERQ 140 (408)
T ss_pred hhH-HH---HhcchHHHHHHHHHHHHhHHH---HHcCCCcccceeeeehhhhHHHHHHHHHHHHhc
Confidence 542 22 344554443332222222111 135899999999997777655565555555543
No 29
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=85.21 E-value=17 Score=34.12 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcccccCch--hHHHHHHhhHhhccccccccccccccccccchhH---HHHHHHHHHHHHhhc----
Q 037375 35 MLVLSFILGHVLRRHKFYYLPE--ASASLLIGLIVSALTNISNTETNIRYSFSFNELI---CSVATCLLMILFSWQ---- 105 (183)
Q Consensus 35 ll~l~~l~~~~~~~~~~~~lp~--s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~---f~~~l~LP~ig~~l~---- 105 (183)
.+.+++.+++++-+.|+.++.- ....+..|+++|.+-. ++++++ ++..| .=.+||+.-
T Consensus 14 ~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~------------~i~~~v~~~gl~lF-vy~vG~~~Gp~Ff 80 (562)
T TIGR03802 14 ALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI------------QIDPGVKAVFFALF-IFAIGYEVGPQFF 80 (562)
T ss_pred HHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC------------CCChHHHHHHHHHH-HHHhhhccCHHHH
Confidence 3444555666665555544443 3677778999997521 233332 22222 112266543
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccC
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISA 160 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSa 160 (183)
+.+||+-.+...+|++-++....++-...|+. ..+.+....++=||+-+.
T Consensus 81 ~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~-----g~~~~~~~Gl~aGalT~t 130 (562)
T TIGR03802 81 ASLKKDGLREIILALVFAVSGLITVYALAKIF-----GLDKGTAAGLAAGGLTQS 130 (562)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHhchhhcc
Confidence 35555555666677655555444433344433 345666777777777643
No 30
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=83.95 E-value=24 Score=29.58 Aligned_cols=49 Identities=10% Similarity=-0.039 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHH---HH--hhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 88 ELICSVATCLLMI---LF--SWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 88 ~~~f~~~l~LP~i---g~--~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
.+.+...+ =|-. ++ .-+ +.+|||+.+|+.=-++|...+.+..-...+++
T Consensus 64 ~~~l~~lL-gPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l 118 (232)
T PRK04288 64 GDIISFFL-EPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI 118 (232)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 4544 32 234 78999999999888888888777666666664
No 31
>COG2855 Predicted membrane protein [Function unknown]
Probab=83.86 E-value=30 Score=30.60 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=54.1
Q ss_pred cCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHH
Q 037375 53 YLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTG 131 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g 131 (183)
.+|.....+++|+++|........- ..-++|......-+= --.+|++++ .++.+--.+.+. ....++.+++..
T Consensus 36 ~l~al~lAIllGi~l~~l~~~~~~~---~~GI~fs~k~LLr~g-IvLlG~~ltl~~i~~~G~~~v~-~~~~~l~~t~~~- 109 (334)
T COG2855 36 GLSALTLAILLGILLGILPQIPAQT---SAGITFSSKKLLRLG-IVLLGFRLTLSDIADVGGSGVL-IIAITLSSTFLF- 109 (334)
T ss_pred CchHHHHHHHHHHHHhccccchhhh---ccchhhhHHHHHHHH-HHHHcceeeHHHHHHcCccHHH-HHHHHHHHHHHH-
Confidence 4889999999999999655443211 123556554332221 112399998 777764444433 333445555533
Q ss_pred HHHHHHhhhhccccCCHHHHHHhhh
Q 037375 132 ILVYLGGVMFVMYRLPFVECLMFGA 156 (183)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~allfGA 156 (183)
.|++++ ..++++..+++.|+
T Consensus 110 --~~~lg~---~lgld~~~a~Lia~ 129 (334)
T COG2855 110 --AYFLGK---LLGLDKKLALLIAA 129 (334)
T ss_pred --HHHHHH---HhCCCHHHHHHHHc
Confidence 333333 35889988888873
No 32
>PRK01658 holin-like protein; Validated
Probab=83.56 E-value=17 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.063 Sum_probs=33.0
Q ss_pred HHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 98 LMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 98 P~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
|.- |.--. ..+++|+.+++.--+++|+++..++|....+.
T Consensus 72 Pa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l 113 (122)
T PRK01658 72 PSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLL 113 (122)
T ss_pred HhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 65555 78999999999999999999999999887765
No 33
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=82.07 E-value=27 Score=31.51 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhc---ccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHH-Hhhc-hhH
Q 037375 34 MMLVLSFILGHVLRRH---KFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMIL-FSWQ-KPF 108 (183)
Q Consensus 34 ~ll~l~~l~~~~~~~~---~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig-~~l~-~~f 108 (183)
.++.++...++.+.+. .-..+|.=+..++.|+++--+.......+-..+.++.-.++..-++ .-.+ -+++ ...
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlf--l~~AlmsL~L~~l 299 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLF--LAIALMSLQLWEL 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH--HHHHHHhCcHHHH
Confidence 3444444444444221 1256898888888888776655432211100000111111211111 1112 4677 899
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 109 FSNFGAIVTFAIFGTFLASMVTGILVYL 136 (183)
Q Consensus 109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~ 136 (183)
.+++.|++.+.+.+++++....-...+-
T Consensus 300 ~~~a~Plliil~~q~i~~~l~~~fv~fr 327 (398)
T TIGR00210 300 ADLAGPIALILLVQVMFMALYAIFVTFR 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999987654444443
No 34
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=80.09 E-value=45 Score=30.07 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhH---HHHHHHHHHHHHhhc
Q 037375 29 ILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELI---CSVATCLLMILFSWQ 105 (183)
Q Consensus 29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~---f~~~l~LP~ig~~l~ 105 (183)
+.+.++++.++..+-...+--+...+|+++.-=+++.+.-.+.+.... ..++||.++ ++.++ +--+|+.-+
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~-----~~~~fd~~l~~~lm~~f-FatigLga~ 82 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFG-----TEVNFDFSLRDPLMLIF-FTTIGLSAN 82 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhcc-----EEEEcChhHHHHHHHHH-HHHhhhcCC
Confidence 344444555555443333322446799998765554211111111110 123455443 33333 333478878
Q ss_pred -hhHHhhHHHHHHHHHHHHHH
Q 037375 106 -KPFFSNFGAIVTFAIFGTFL 125 (183)
Q Consensus 106 -~~f~~n~~~Il~lA~~Gt~i 125 (183)
+..||..+++..+....+..
T Consensus 83 ~~~l~~gg~~l~~~~~~~~~l 103 (398)
T TIGR00210 83 FKSLLKGGKPLLIFLATAVGF 103 (398)
T ss_pred hHHHHhChHHHHHHHHHHHHH
Confidence 78888888887766654443
No 35
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=77.75 E-value=52 Score=29.43 Aligned_cols=62 Identities=11% Similarity=0.063 Sum_probs=37.1
Q ss_pred HHHH----HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHH
Q 037375 97 LLMI----LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPIT 165 (183)
Q Consensus 97 LP~i----g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVA 165 (183)
.|.+ |.++| +.+.+++..++.+..+....-........+.. +++...++..|...++--..+
T Consensus 279 iplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~-------g~~~~~~~~~g~~~~~~ge~~ 345 (397)
T COG0475 279 IPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLL-------GFSKRLALGIGLLLRQGGEFA 345 (397)
T ss_pred HHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCcHHHHHHHHhhhhhhhHHH
Confidence 5554 99999 99999888866555544444444444444433 456666666666555543333
No 36
>PRK01821 hypothetical protein; Provisional
Probab=77.72 E-value=29 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037375 98 LMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGG 138 (183)
Q Consensus 98 P~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~ 138 (183)
|.- |.--. ..+++|+.+++.--+++|+++..++|....++.
T Consensus 77 Pa~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~ 119 (133)
T PRK01821 77 PIGVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH 119 (133)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 65555 789999999999889999999999998877753
No 37
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=76.18 E-value=52 Score=28.60 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccc
Q 037375 33 IMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTN 72 (183)
Q Consensus 33 i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~ 72 (183)
..++..+...+++.++ .++|-+.++ ..++.+.+.+
T Consensus 158 ~~l~~~~~~g~~l~~~---l~iPa~~ll--Gpml~~a~~~ 192 (318)
T PF05145_consen 158 ALLALAALAGGLLARR---LRIPAPWLL--GPMLVSAILN 192 (318)
T ss_pred HHHHHHHHHHHHHHHH---hCCCcHHHH--HHHHHHHHHH
Confidence 3344445556666543 346655443 4444444443
No 38
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=73.97 E-value=71 Score=29.14 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=67.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHH-HHHHHHHhcccccCchhHHHHHHhhHhhcccccccc--ccccccccccchhHHHHHH
Q 037375 19 AKEQQAAGVGILLQIMMLVLSF-ILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNT--ETNIRYSFSFNELICSVAT 95 (183)
Q Consensus 19 ~~~~~~~~~~i~~~i~ll~l~~-l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~--~~~~~~~~~~~~~~f~~~l 95 (183)
+++++....+-.-..+++..+. ..+.+++ + +..+|.....++.-+++=. .+..++ +++..++ .+++.--+
T Consensus 237 ~~~~~~~~~~~~g~Gllla~~~y~~G~ll~-~-~i~ih~~a~mIi~~~i~K~-~~lvP~~~e~~a~~~----~~f~~~~l 309 (414)
T PF03390_consen 237 KKKEKPIDFSDMGAGLLLACSFYILGVLLS-K-LIGIHAYAWMIILVAIVKA-FGLVPESLEEGAKQW----YKFFSKNL 309 (414)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHH-H-hcCCcHHHHHHHHHHHHHH-hCcCCHHHHHHHHHH----HHHHHHHH
Confidence 3333344444444444444443 3566653 3 2488888776655444322 222211 1111111 23333333
Q ss_pred HHHHH----HHh-hc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhh----ccCccHHH
Q 037375 96 CLLMI----LFS-WQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGAL----ISATDPIT 165 (183)
Q Consensus 96 ~LP~i----g~~-l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAi----iSaTDPVA 165 (183)
.+|+ |.. +| +++.+.+.+--..-++.+++.+.+.+...=. ..++...|+-+-+++ ..-|-=||
T Consensus 310 -t~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~------l~g~YPvEsAItaGLC~an~GGtGDvA 382 (414)
T PF03390_consen 310 -TWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGK------LVGFYPVESAITAGLCMANMGGTGDVA 382 (414)
T ss_pred -HHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH------HhCCChHHHHHHhhhcccCCCCCCcch
Confidence 3443 666 77 7776666444444444445544444433322 136655555555543 23466677
Q ss_pred HHHHHhhcC
Q 037375 166 VLSIFQGTC 174 (183)
Q Consensus 166 Vlai~~~l~ 174 (183)
|++-=+|++
T Consensus 383 VLsAa~RM~ 391 (414)
T PF03390_consen 383 VLSAANRME 391 (414)
T ss_pred heehhhhcc
Confidence 777776664
No 39
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=69.21 E-value=50 Score=29.00 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=34.8
Q ss_pred HHHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhh----------hhccCccHH
Q 037375 100 ILFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFG----------ALISATDPI 164 (183)
Q Consensus 100 ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfG----------AiiSaTDPV 164 (183)
+|.+++ ++..+.-.+-+.++++- ...++...|++.+. .+.+-..+.+.| |.+.++||+
T Consensus 205 LG~~lnl~~I~~~G~~GIlL~v~v----v~~t~~~~~~i~rl---lg~~~~~g~li~stAGnAIcgpAAVaAadP~ 273 (312)
T PRK12460 205 LGAGINLSMLLQAGLAGILLGVLV----TIVTGFFNIFADRL---VGGTGIAGAAASSTAGNAVATPLAIAAADPS 273 (312)
T ss_pred hcCCeeHHHHHHhChHHHHHHHHH----HHHHHHHHHHHHHH---hCCChhHHHHHHHHhhHHHHHHHHHHHhchh
Confidence 388999 88877666666666433 33344555555542 255555566665 456677765
No 40
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=67.70 E-value=90 Score=27.78 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=56.2
Q ss_pred HHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH---HHh-hc-hhHHhhH-HHH
Q 037375 42 LGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI---LFS-WQ-KPFFSNF-GAI 115 (183)
Q Consensus 42 ~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i---g~~-l~-~~f~~n~-~~I 115 (183)
.+.+++ ....+|..+..+++|+++-..-..+.. .++.-+--.+++...+-.|.+ |.. .+ +++.+.+ .+.
T Consensus 194 ~g~l~~--~~~~Ih~~v~mII~~vi~k~~gllp~~---i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~ 268 (347)
T TIGR00783 194 AGGLLK--SFPGIPAYAFMILIAAALKAFGLVPKE---IEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQF 268 (347)
T ss_pred HHHHHH--hcccCCHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhH
Confidence 455553 445789999999888877653222111 111101011233333313333 444 56 7777777 555
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhccccCCHHHHHHhhh----hccCccHHHHHHHHhhcC
Q 037375 116 VTFAIFGTFLASMVTG-ILVYLGGVMFVMYRLPFVECLMFGA----LISATDPITVLSIFQGTC 174 (183)
Q Consensus 116 l~lA~~Gt~is~~~~g-~~~~~~~~~~~~~~~~l~~allfGA----iiSaTDPVAVlai~~~l~ 174 (183)
+...+.+|+ ...+.+ ..-+++ ++...|+-+-+. =..-|-=|||++.=||++
T Consensus 269 vviiv~~Vl-g~ii~s~lvGKll-------G~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 269 VVICLSVVV-AMILGGAFLGKLM-------GMYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred hhhHHHHHH-HHHHHHHHHHHHh-------CCChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 444443333 233222 233332 554444444433 223455566666666554
No 41
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=65.66 E-value=1e+02 Score=27.60 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=43.6
Q ss_pred ccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHH---HHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHH
Q 037375 52 YYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVAT---CLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLAS 127 (183)
Q Consensus 52 ~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l---~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~ 127 (183)
+++|..++..+.|++.+-+-...++.+ + +.. +...-++ ++|.+-++.| |+.+|.-++. +.++..-.+++
T Consensus 23 ~~l~~~vl~~~~~~~lsnlgli~~p~~----s-~~y-~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~-l~~F~~~~~g~ 95 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSNLGLIDSPAS----S-PVY-DFVWTYLVPLAIPLLLLSADLRRILRLGGRL-LLAFLIGAVGT 95 (378)
T ss_pred hhcCHHHHHHHHHHHHHHCCCcCCCCc----c-hHH-HHHHHHHHHHHHHHHHHHccHHHHHHhhHHH-HHHHHHHHHHH
Confidence 589999999999999886533311111 0 111 2222222 2333478888 8887765544 34443344444
Q ss_pred HHHHHHHHHHh
Q 037375 128 MVTGILVYLGG 138 (183)
Q Consensus 128 ~~~g~~~~~~~ 138 (183)
++-+...+++.
T Consensus 96 viG~~va~~l~ 106 (378)
T PF05684_consen 96 VIGAVVAFLLF 106 (378)
T ss_pred HHHHHHHHHHH
Confidence 44444555544
No 42
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=64.94 E-value=82 Score=26.32 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
+.+|||+.+++.=-.+|...+....-...+++
T Consensus 81 ~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~l 112 (226)
T TIGR00659 81 PQIKKYWKEIILNVAVGSVIAIISGTLLALLL 112 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999998877778877766555555554
No 43
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=64.86 E-value=1e+02 Score=27.26 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=47.5
Q ss_pred ccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHHHHH
Q 037375 52 YYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLASMVT 130 (183)
Q Consensus 52 ~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~ 130 (183)
..++.....+++|++++-...... .+..+..++|..+.+.-.= .-.+|++++ .+..+.-.+.+..+. .++.+++..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~-~~~~~~Gi~f~~k~lLr~g-IVLlG~~l~~~~i~~~G~~~l~~~~-~~v~~~~~~ 105 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQR-DEEKKRGVLFAKPFLLRIG-ITLYGFRLTFPYIADVGPNEIVADT-LILTSTFFL 105 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccc-hhhccchHHHHHHHHHHHH-HHHHCccccHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 468888888888888876431111 1111222334333322211 123399999 787665554443333 333333322
Q ss_pred HHHHHHHh-hhhccccCCHHHHHHhh
Q 037375 131 GILVYLGG-VMFVMYRLPFVECLMFG 155 (183)
Q Consensus 131 g~~~~~~~-~~~~~~~~~l~~allfG 155 (183)
.+|++ + ..+++...+.+.|
T Consensus 106 ---~~~~g~k---~l~l~~~~~~Lia 125 (335)
T TIGR00698 106 ---TVFLGSS---RLKLDKQMSILLG 125 (335)
T ss_pred ---HHHHHHH---HhCCChhHHHHHH
Confidence 23333 2 1366676676665
No 44
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=64.03 E-value=22 Score=25.51 Aligned_cols=37 Identities=16% Similarity=0.004 Sum_probs=29.3
Q ss_pred HHHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 037375 97 LLMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGIL 133 (183)
Q Consensus 97 LP~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~ 133 (183)
.|+- |.--. +.+++++.+++.--+++|+++..++|..
T Consensus 56 vPa~VGi~~~~~~l~~~~~~i~~~i~vsT~l~~~~tg~~ 94 (96)
T PF03788_consen 56 VPAGVGIMEYFDLLAQEGLPILVVIVVSTLLVLAVTGWV 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4554 66666 7899999999998899999888877654
No 45
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=59.65 E-value=41 Score=22.33 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=17.4
Q ss_pred ccCchhHHHHHHhhHhhccc
Q 037375 52 YYLPEASASLLIGLIVSALT 71 (183)
Q Consensus 52 ~~lp~s~~lil~Gl~~G~i~ 71 (183)
-++|-|...+++|++++++-
T Consensus 37 GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 37 GRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred CCcchHHHHHHHHHHHHHHc
Confidence 57999999999999998753
No 46
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=59.51 E-value=77 Score=24.16 Aligned_cols=42 Identities=21% Similarity=0.036 Sum_probs=34.2
Q ss_pred HHHH-HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037375 97 LLMI-LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGG 138 (183)
Q Consensus 97 LP~i-g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~ 138 (183)
.|+- |---. +...+++.+|+.-.+++|++...++|....++.
T Consensus 72 VPa~VgVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l~ 115 (128)
T COG1380 72 VPAGVGVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLLI 115 (128)
T ss_pred hcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3544 65445 788999999999999999999999998888764
No 47
>PRK04972 putative transporter; Provisional
Probab=57.01 E-value=1.4e+02 Score=28.19 Aligned_cols=88 Identities=15% Similarity=0.040 Sum_probs=44.0
Q ss_pred HHHHHHHHHh--cccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHHHhhc----hhHHhhH
Q 037375 39 SFILGHVLRR--HKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ----KPFFSNF 112 (183)
Q Consensus 39 ~~l~~~~~~~--~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~----~~f~~n~ 112 (183)
++.+++++-+ .+-..+-.++..++.|+++|.+-...+ . .. .++.+..| +=-+|++-- +.++++-
T Consensus 20 ~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~------~--~~-~~~gl~lF-~~~vG~~~Gp~F~~~l~~~g 89 (558)
T PRK04972 20 VLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSIN------T--DA-LNLGFMLF-IFCVGVEAGPNFFSIFFRDG 89 (558)
T ss_pred HHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCCC------h--HH-HHHHHHHH-HHHHhhhhhHHHHHHHHHhh
Confidence 3344444432 334566677788889999997532110 0 11 13333333 222355433 3555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 113 GAIVTFAIFGTFLASMVTGILVYL 136 (183)
Q Consensus 113 ~~Il~lA~~Gt~is~~~~g~~~~~ 136 (183)
.....++++-++....+.....++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~ 113 (558)
T PRK04972 90 KNYLMLALVMVGSALVIALGLGKL 113 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555554444443433
No 48
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=55.80 E-value=1.5e+02 Score=26.35 Aligned_cols=89 Identities=15% Similarity=0.117 Sum_probs=46.4
Q ss_pred HHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHH-Hhhc-hhHHhhHHHHHHH
Q 037375 41 ILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMIL-FSWQ-KPFFSNFGAIVTF 118 (183)
Q Consensus 41 l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig-~~l~-~~f~~n~~~Il~l 118 (183)
.++.+++. ....+|.=+..++.|+++--+.+.....+-.++.++.-.++..-++ .-.+ -+++ ..+.++..|++..
T Consensus 235 ~i~~~l~~-~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~f--l~~almsl~l~~l~~~a~Pllii 311 (368)
T PF03616_consen 235 IISALLKK-IGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLF--LAMALMSLKLWVLADYALPLLII 311 (368)
T ss_pred HHHHHHHH-cCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHH
Confidence 34444433 4467888777777777776554322211100000111111111111 1112 4677 7999999999987
Q ss_pred HHHHHHHHHHHHHH
Q 037375 119 AIFGTFLASMVTGI 132 (183)
Q Consensus 119 A~~Gt~is~~~~g~ 132 (183)
-.++++++.+..-.
T Consensus 312 l~~q~i~~~~f~~f 325 (368)
T PF03616_consen 312 LAVQTILMVLFAYF 325 (368)
T ss_pred HHHHHHHHHHHHHH
Confidence 77787776664333
No 49
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=55.52 E-value=87 Score=25.53 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=18.8
Q ss_pred cCCHHHHHHhhhhccCccHHHHHH
Q 037375 145 RLPFVECLMFGALISATDPITVLS 168 (183)
Q Consensus 145 ~~~l~~allfGAiiSaTDPVAVla 168 (183)
++-....+++||+++|+||++-+-
T Consensus 183 r~~~~~~~i~aa~iTPpD~~sq~~ 206 (215)
T TIGR00945 183 RYVIVGAFVIGAILTPPDPLSQIL 206 (215)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHH
Confidence 344567899999999999987543
No 50
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=55.45 E-value=1.2e+02 Score=25.09 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHH---HHh--hc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 88 ELICSVATCLLMI---LFS--WQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 88 ~~~f~~~l~LP~i---g~~--l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
.+.+...+ =|-. ++- -+ +.+|||+.+++.=-..|++.+.+..-...+++
T Consensus 48 g~~l~~lL-gPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 48 GDILSFLL-GPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555 4444 332 23 68999999999888889888877776667665
No 51
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=54.68 E-value=1.1e+02 Score=24.29 Aligned_cols=94 Identities=18% Similarity=0.188 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccc---ccCchhHHHHHHhhHhhccccccccccccccccccch---hHHHHHHHHHHHHHh----hchhH
Q 037375 39 SFILGHVLRRHKF---YYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNE---LICSVATCLLMILFS----WQKPF 108 (183)
Q Consensus 39 ~~l~~~~~~~~~~---~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~---~~f~~~l~LP~ig~~----l~~~f 108 (183)
++.+++.+-+.++ .++-.+...++.|+++|.+-+..... ...+.++ ++.+..+ +--+|++ .-+.+
T Consensus 5 ~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~----~~~~~~~~l~~~GL~lF-l~~VGl~aG~~F~~~l 79 (169)
T PF06826_consen 5 GIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIF----LPISAPSFLRQLGLALF-LAAVGLSAGPGFFSSL 79 (169)
T ss_pred HHHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCC----CCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3344444433333 67778888889999999874321110 0111222 3333333 2222443 22567
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 109 FSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
+|+-.+...++++-+.+...+.....+++
T Consensus 80 ~~~G~~~~~~~~~i~~~~~~~~~~~~~~~ 108 (169)
T PF06826_consen 80 KRGGLKLLLLGVIITLVPLLIALVIGRYL 108 (169)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77767777778777777666665666543
No 52
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=54.57 E-value=1.6e+02 Score=26.33 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhh
Q 037375 97 LLMILFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFG 155 (183)
Q Consensus 97 LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfG 155 (183)
+-.+|...| +.+.+ -+.++.++++-..++..+.-....+ .++++.++.+=.
T Consensus 277 fa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl-------~k~~l~~~~vAS 328 (378)
T PF05684_consen 277 FAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKL-------FKIDLFELLVAS 328 (378)
T ss_pred HHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHh
Confidence 344588889 88888 5556666666666655544433333 478887665543
No 53
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=54.27 E-value=2e+02 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 037375 118 FAIFGTFLASMVTGILVYLGGV 139 (183)
Q Consensus 118 lA~~Gt~is~~~~g~~~~~~~~ 139 (183)
-=++|+++++++....+.++.+
T Consensus 473 ~Q~iG~~ig~~v~~~v~~l~~~ 494 (624)
T PF03169_consen 473 AQIIGTIIGAFVAVAVMRLLNQ 494 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3378888888877777777644
No 54
>COG3329 Predicted permease [General function prediction only]
Probab=54.02 E-value=66 Score=28.47 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=65.2
Q ss_pred cCchhHHHHHHhhHhhccccccccccccccccccc---hhHHHHHHHHHHHHHhhc-hhHHhhHHHHHHHHHHHHHHHHH
Q 037375 53 YLPEASASLLIGLIVSALTNISNTETNIRYSFSFN---ELICSVATCLLMILFSWQ-KPFFSNFGAIVTFAIFGTFLASM 128 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~---~~~f~~~l~LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~is~~ 128 (183)
-+.+++++...|+++...- ..+++. ++...+++ +--||++=- +--..|...++..+..|+.+..+
T Consensus 15 L~sP~llFf~~Gmlia~~k----------sdl~iP~~i~~~lslyL-L~aIG~kGGveir~snl~a~v~~~~~~~aL~~l 83 (372)
T COG3329 15 LLSPTLLFFILGMLIAAFK----------SDLEIPEAIYQALSLYL-LLAIGFKGGVEIRNSNLTAMVLPVALGVALGFL 83 (372)
T ss_pred hccchHHHHHHHHHHHHHh----------ccccCchHHHHHHHHHH-HHHHhcccceeeecCCcchhHHHHHHHHHHHHH
Confidence 3677888888999886531 122332 34455565 556677654 45556888888888888888776
Q ss_pred HHHHHHHHHhhhhccccCCHHHHHHhhhhccCccH---HHHHHHHhhcC
Q 037375 129 VTGILVYLGGVMFVMYRLPFVECLMFGALISATDP---ITVLSIFQGTC 174 (183)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDP---VAVlai~~~l~ 174 (183)
+.-..-+.+.+ .++++-.++...|+.-.++.. .|..+.++|.+
T Consensus 84 i~~ia~f~l~k---l~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~g 129 (372)
T COG3329 84 IVFIAYFLLRK---LPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESG 129 (372)
T ss_pred HHHHHHHHHHH---ccccchHHHHHHHhhccchhHHHHHHHHHHHHHcC
Confidence 65555554433 246666666555544433332 23447777775
No 55
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=48.84 E-value=2e+02 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcccccc
Q 037375 20 KEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNIS 74 (183)
Q Consensus 20 ~~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~ 74 (183)
++...+......+.++...+.+.+...|+ .++|-+.++ ..++++...+..
T Consensus 178 ~~i~~~~~~~~~~~~l~~~~~~~g~l~~~---lr~Pa~~ll--~~l~l~a~v~~~ 227 (352)
T COG3180 178 PEIWLPPVDWLILLLLILAALLGGLLGKL---LRFPAPTLL--GPLLLGAIVHFG 227 (352)
T ss_pred ccccCchhhHHHHHHHHHHHHHHHHHHHH---HcCCcHHHH--HHHHHHHHhhcc
Confidence 33344444444334444444445555432 457766555 555555555443
No 56
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=47.17 E-value=1.8e+02 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCHHHHHHhhhhccCccHHHHH
Q 037375 146 LPFVECLMFGALISATDPITVL 167 (183)
Q Consensus 146 ~~l~~allfGAiiSaTDPVAVl 167 (183)
+-+...+++||+++|.||++-+
T Consensus 195 ~~~v~~~iiaAiiTPpD~isq~ 216 (258)
T PRK10921 195 YVLVGAFVVGMLLTPPDVFSQT 216 (258)
T ss_pred HHhHHHHHHHHHcCCCcHHHHH
Confidence 3445678999999999998744
No 57
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=44.59 E-value=93 Score=28.92 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=47.7
Q ss_pred cCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHH---HHHHH------H-Hhhc-hhHHh-hHHHHHHHHH
Q 037375 53 YLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVAT---CLLMI------L-FSWQ-KPFFS-NFGAIVTFAI 120 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l---~LP~i------g-~~l~-~~f~~-n~~~Il~lA~ 120 (183)
.+=-++..+++|...|...+..+.+.+-..-+.|..|+|+-++ .||++ | -++| +.-.| -.+.+..|.
T Consensus 18 LlllTv~~Vv~G~~lGf~LR~~~ls~~~i~yi~FPGElfmrmLkmmILPLI~SSlisgla~LDa~~sGrlg~~av~YY~- 96 (507)
T KOG3787|consen 18 LLLLTVSGVVLGVLLGFLLRPLSLSPDEIMYISFPGELLMRMLKMMILPLIVSSLISGLASLDAKASGRLGMRAVVYYM- 96 (507)
T ss_pred hHHHHHHHHHHHHhhhheecCCCCChhheeeeeCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHH-
Confidence 3445556666777777776655444433445688888876543 37876 3 3566 54433 233333343
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037375 121 FGTFLASMVTGILVYLG 137 (183)
Q Consensus 121 ~Gt~is~~~~g~~~~~~ 137 (183)
-|-+.+.++|+.+-..
T Consensus 97 -~TT~~Av~lGI~lV~~ 112 (507)
T KOG3787|consen 97 -STTIIAVILGIALVLI 112 (507)
T ss_pred -HHHHHHHHHHHheeEE
Confidence 3555577777766543
No 58
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=43.70 E-value=1e+02 Score=30.36 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=13.7
Q ss_pred ccCCHHHHHHhhhhccCc
Q 037375 144 YRLPFVECLMFGALISAT 161 (183)
Q Consensus 144 ~~~~l~~allfGAiiSaT 161 (183)
.++|+.+++..|.+.+.-
T Consensus 360 ~k~p~~~~l~l~~lm~~k 377 (769)
T KOG1650|consen 360 CKLPLRDSLALGLLMSTK 377 (769)
T ss_pred hcCchhHHHHHHHHHHhh
Confidence 378888888888876643
No 59
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.80 E-value=1.1e+02 Score=22.22 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcc
Q 037375 36 LVLSFILGHVLRRHKFYYLPEASASLLIGLIVSAL 70 (183)
Q Consensus 36 l~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i 70 (183)
.++++.++.++-++.-.....+..++++|+++|..
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 34555666666544333456677788888888763
No 60
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=40.74 E-value=2.2e+02 Score=23.90 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=67.2
Q ss_pred cccCchhHHHHHHhhHhhcccccccc-ccccccccccchhHHHHHH-----HHH---HH--HHhhc-hhHHhhHHHHHHH
Q 037375 51 FYYLPEASASLLIGLIVSALTNISNT-ETNIRYSFSFNELICSVAT-----CLL---MI--LFSWQ-KPFFSNFGAIVTF 118 (183)
Q Consensus 51 ~~~lp~s~~lil~Gl~~G~i~~~~~~-~~~~~~~~~~~~~~f~~~l-----~LP---~i--g~~l~-~~f~~n~~~Il~l 118 (183)
.-++|-|...+++|+++.++-..... ++++-+ -.+|-.+= .+- .. +|..+ ++.||.-..-..-
T Consensus 37 ~Gr~hgSAIAI~lGL~lAy~gG~~TgG~kGlaD-----i~lfsGiglmGGaMlRDfAIvaTAf~v~~~e~kkaG~~G~vs 111 (254)
T TIGR00808 37 KGKLHGSAIAITMGLVLAYVGGVYTGGEKGLAD-----IAIFGGFGLMGGAMLRDLAIVATAFEVDVKEVKKAGKVGMVA 111 (254)
T ss_pred cCCcchhHHHHHHHHHHHHHcccccCCccccch-----hhhhcchhhhhhHHHHHHHHHHHhhcCcHHHHHHcchHHHHH
Confidence 35799999999999999987543322 222111 11221111 011 11 78888 8888754444433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-c-cc-----cCCHHHHHHhhhhccCccHHHHHHHHhhcCc
Q 037375 119 AIFGTFLASMVTGILVYLGGVMF-V-MY-----RLPFVECLMFGALISATDPITVLSIFQGTCA 175 (183)
Q Consensus 119 A~~Gt~is~~~~g~~~~~~~~~~-~-~~-----~~~l~~allfGAiiSaTDPVAVlai~~~l~a 175 (183)
=++|++++.++-....|.++... . +. ...+...=.-|+.+.|+..|-.+||-..+-+
T Consensus 112 L~~G~v~~F~~Ga~vA~afGY~DavS~tTIGAGAvTyIVGPVTGaAiGAsS~ViALSIA~GlvK 175 (254)
T TIGR00808 112 LLLGCVIPFVIGAMVAWAFGYRDAVSMTTIGAGAVTYIVGPVTGAAVGASSEVIALSIAIGLIK 175 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCchhheeeccceEEEEecCccchhccCCcchHHHHHHHhHHH
Confidence 36788887666555565543210 0 00 1122233345788888888888887665543
No 61
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.54 E-value=1.4e+02 Score=22.27 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=28.2
Q ss_pred CCCchhhhhhhHHHH-HHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcc
Q 037375 16 GSPAKEQQAAGVGIL-LQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSAL 70 (183)
Q Consensus 16 ~~~~~~~~~~~~~i~-~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i 70 (183)
.+.+.+.....+.+. -+|--.++...++|++-|.--...=--++++++|+..|..
T Consensus 35 ~a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 35 SAESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 333333333444433 3445556677888888543222222335556667776653
No 62
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=38.74 E-value=54 Score=20.41 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=17.4
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHH
Q 037375 106 KPFFSNFGAIVTFAIFGTFLASMV 129 (183)
Q Consensus 106 ~~f~~n~~~Il~lA~~Gt~is~~~ 129 (183)
++|+||...+..+.++..++-..+
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl~ai 33 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVLLAI 33 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHH
Confidence 789999988888777665554443
No 63
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=37.35 E-value=1.9e+02 Score=22.20 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHH--HHHHhhc----hhHH
Q 037375 36 LVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLL--MILFSWQ----KPFF 109 (183)
Q Consensus 36 l~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP--~ig~~l~----~~f~ 109 (183)
+.++.+.+++.++ .++|-+. ++..++.+.+.+.... .+.+.++........+- -+|.+++ ++.+
T Consensus 4 ~~~~~~~g~l~~~---l~~Pa~~--llG~mi~~~~~~~~~~-----~~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~ 73 (156)
T TIGR03082 4 LLVGLAGGLLASL---LGLPAAW--LLGPLLAGAVLSLAGG-----LEITLPPWLLALAQVVIGILIGSRFTREVLAELK 73 (156)
T ss_pred HHHHHHHHHHHHH---HCCCcHH--HHHHHHHHHHHHhcCC-----ccCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3455566666543 3456443 3344555444443321 12234444332222011 1255544 3445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHH
Q 037375 110 SNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECL 152 (183)
Q Consensus 110 ~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~al 152 (183)
|++.+.+ ..++.++..+...+..++.. .++++..++
T Consensus 74 ~~~~~~l-~~~~~~l~~~~~~~~~l~~~------~~~~~~ta~ 109 (156)
T TIGR03082 74 RLWPAAL-LSTVLLLALSALLAWLLARL------TGVDPLTAF 109 (156)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH------HCCCHHHHH
Confidence 5554443 33444555555555555554 478888875
No 64
>PRK04972 putative transporter; Provisional
Probab=36.88 E-value=3.7e+02 Score=25.35 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCc----hhHHHHHHhhHhhccccccccccccccccccch-------hHHHHHH
Q 037375 27 VGILLQIMMLVLSFILGHVLRRHKFYYLP----EASASLLIGLIVSALTNISNTETNIRYSFSFNE-------LICSVAT 95 (183)
Q Consensus 27 ~~i~~~i~ll~l~~l~~~~~~~~~~~~lp----~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~-------~~f~~~l 95 (183)
.++..+.+-+++..+++.+ .-+...+| -+...++.|+++|.+-+...... .+++ ++=...|
T Consensus 381 ~d~~~~~~Gi~lG~llG~i--~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~------~~p~~a~~~l~~~GL~lF 452 (558)
T PRK04972 381 TDLLAFCAFFIIGLMIGMI--TFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFG------YIPQGALNMVKEFGLMVF 452 (558)
T ss_pred CcHHHHHHHHHHHHHHcce--eEeeCCeeeeccccHHHHHHHHHHHhccccCCCce------eeCHHHHHHHHHHhHHHH
Confidence 4455555566666666655 22333333 35678888999988543322100 1111 2212222
Q ss_pred HHHHH----HHhhchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhc-cCccHHHHHHHH
Q 037375 96 CLLMI----LFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALI-SATDPITVLSIF 170 (183)
Q Consensus 96 ~LP~i----g~~l~~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAii-SaTDPVAVlai~ 170 (183)
+-.. |...-+.++++...++..+++-|++..++.....+++ .++++. .+.|++- +-|+|.+.-+.-
T Consensus 453 -la~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~------~k~~~~--~~~G~~aG~~t~~~~l~~~~ 523 (558)
T PRK04972 453 -MAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYV------LRMNRA--LLFGAIMGARTCAPAMEIIS 523 (558)
T ss_pred -HHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCHH--HHHHHHhCCCCCcHHHHHHH
Confidence 2222 3333235555566666666666666666666666544 366665 5667665 557777777777
Q ss_pred hhcC
Q 037375 171 QGTC 174 (183)
Q Consensus 171 ~~l~ 174 (183)
+..+
T Consensus 524 ~~~~ 527 (558)
T PRK04972 524 DTAR 527 (558)
T ss_pred hhcC
Confidence 6654
No 65
>PLN02715 lipid phosphate phosphatase
Probab=36.66 E-value=71 Score=28.15 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=35.9
Q ss_pred ccCCCCC-CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHhhHhhcc
Q 037375 7 QISPAND-PHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSAL 70 (183)
Q Consensus 7 ~~~~~~~-~~~~~~~~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i 70 (183)
++.+.++ ...+|-++|+.....+.+..+++-+.+++..++++++...+..+.+..++++++..+
T Consensus 73 ~~~~~~~~~i~yP~~~~tVp~~~l~vi~~liPii~i~~~~~~r~~~~~~~~~~l~l~~al~~t~l 137 (327)
T PLN02715 73 YVGKDMMTDLKYPFKDNTVPIWSVPVYAVLLPIILFVCFYLKRRCVYDLHHSILGLLFAVLITGV 137 (327)
T ss_pred cCCcccchhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 357777777777666555555444444445555555444556666666666666554
No 66
>PRK03818 putative transporter; Validated
Probab=36.15 E-value=3.7e+02 Score=25.25 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=9.9
Q ss_pred HHHHHHhhHhhccc
Q 037375 58 SASLLIGLIVSALT 71 (183)
Q Consensus 58 ~~lil~Gl~~G~i~ 71 (183)
...++.|+++|.+-
T Consensus 34 ~g~L~~gl~~G~~~ 47 (552)
T PRK03818 34 GGVLFGGIIVGHFV 47 (552)
T ss_pred HHHHHHHHHHhccc
Confidence 56667788888743
No 67
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=34.88 E-value=2.7e+02 Score=23.33 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=19.2
Q ss_pred cCCHHHHHHhhhhccC-ccHHHHHHH
Q 037375 145 RLPFVECLMFGALISA-TDPITVLSI 169 (183)
Q Consensus 145 ~~~l~~allfGAiiSa-TDPVAVlai 169 (183)
+.-...++++||+++| +||++-+.+
T Consensus 204 r~~~v~~~i~aAiiTP~pD~~sqi~l 229 (249)
T CHL00182 204 RYVILVSTIVGAILTPSTDPLTQLLL 229 (249)
T ss_pred chHhHHHHHHHHHhCCCCcHHHHHHH
Confidence 4555678999999999 499876544
No 68
>PRK10711 hypothetical protein; Provisional
Probab=34.18 E-value=2.8e+02 Score=23.23 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHH---HH--hhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 88 ELICSVATCLLMI---LF--SWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLG 137 (183)
Q Consensus 88 ~~~f~~~l~LP~i---g~--~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~ 137 (183)
.+.+...+ =|-. ++ .-+ +.+|||+.+|+.=-.+|..++....-...+++
T Consensus 59 ~~~l~~lL-gPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~l 113 (231)
T PRK10711 59 SEVLNDLL-QPAVVALAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWM 113 (231)
T ss_pred cHHHHhhh-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 4544 22 223 68899999998877888888766655566554
No 69
>COG2431 Predicted membrane protein [Function unknown]
Probab=32.48 E-value=3.4e+02 Score=23.66 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=39.7
Q ss_pred hHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHHHHhhc------hhHHhhHHHHHHHHHHHHHHHHHHH
Q 037375 57 ASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQ------KPFFSNFGAIVTFAIFGTFLASMVT 130 (183)
Q Consensus 57 s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~ig~~l~------~~f~~n~~~Il~lA~~Gt~is~~~~ 130 (183)
-++.++.|+.+|.+.+.... ..+-..|...+.+ +=.+|+++. |+.+=|. .-+.+++ -+++++.+-
T Consensus 109 ~~~~vl~g~~~G~l~~~~~~------~~~~a~~~~L~~L-lF~iGi~l~n~g~~~~~~~Lnk-~gl~l~~-i~ilssliG 179 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFLN------FPENASEYLLYLL-LFLIGIQLGNSGISLRQVLLNK-RGLILAF-ITLLSSLIG 179 (297)
T ss_pred HHHHHHHHHHHHHHhccccc------CchhHHHHHHHHH-HHHHHHHhccccchhhhHHhcc-chHHHHH-HHHHHHHHH
Confidence 35667778888887653211 1111112222221 112255432 2333332 2233333 367777777
Q ss_pred HHHHHHHhhhhccccCCHHHHHHhh
Q 037375 131 GILVYLGGVMFVMYRLPFVECLMFG 155 (183)
Q Consensus 131 g~~~~~~~~~~~~~~~~l~~allfG 155 (183)
|....++ .++|+.+++..+
T Consensus 180 G~iaa~~------l~lpl~~~lAma 198 (297)
T COG2431 180 GLIAAFL------LDLPLTTGLAMA 198 (297)
T ss_pred HHHHHHH------HhccHHHHHHHH
Confidence 7777665 246665555443
No 70
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=29.03 E-value=30 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=18.9
Q ss_pred cCCHHHHHHhhhhccCccHHHHH
Q 037375 145 RLPFVECLMFGALISATDPITVL 167 (183)
Q Consensus 145 ~~~l~~allfGAiiSaTDPVAVl 167 (183)
+.-+..++.+||+++|+||++=.
T Consensus 198 r~~iv~~fViaaviTPpd~~sq~ 220 (255)
T COG0805 198 RYAIVAAFVIAAIITPPDVLSQI 220 (255)
T ss_pred CeeeehHHHHHHHcCCCchHHHH
Confidence 45567999999999999997643
No 71
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=28.57 E-value=82 Score=26.73 Aligned_cols=58 Identities=5% Similarity=0.036 Sum_probs=44.3
Q ss_pred HHhhc-hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHH
Q 037375 101 LFSWQ-KPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPI 164 (183)
Q Consensus 101 g~~l~-~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPV 164 (183)
|..+. |.+++.......+++.--.+.+-.-+...+.. .+.||.++++.|.++.+..+-
T Consensus 172 gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~------l~~~ii~~~l~g~v~~~i~~~ 230 (252)
T KOG3826|consen 172 GLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFL------LAGPIIWAFLLGIVIGSILWR 230 (252)
T ss_pred hhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHH------hccchHHHhccccceeeeecC
Confidence 78888 88887777777777766666666666666664 589999999999998776553
No 72
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=27.51 E-value=34 Score=29.55 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=9.1
Q ss_pred HHhhc-hhH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHH
Q 037375 101 LFSWQ-KPF---FSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPI 164 (183)
Q Consensus 101 g~~l~-~~f---~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPV 164 (183)
|.+++ +.+ .+++.....+.+...+.-...+-...+ ..+.++.+.+..|...++.-.+
T Consensus 277 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~ 337 (380)
T PF00999_consen 277 GMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASR-------LFGIPWKEALFIGLGMLPRGEV 337 (380)
T ss_dssp -----------------------------------------------------HHHHTTTTSS--HHH
T ss_pred cccccccccccchhhhhhHHHHHHHHHHhhhceeehhhh-------hcccccchhHHHHHhhcCccHH
Confidence 89999 777 444444444443333333332222222 2378888888888766644333
No 73
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=27.21 E-value=4.4e+02 Score=23.25 Aligned_cols=29 Identities=3% Similarity=-0.148 Sum_probs=21.6
Q ss_pred HHHHHHhhc-hhHHhhHHHHHHHHHHHHHH
Q 037375 97 LLMILFSWQ-KPFFSNFGAIVTFAIFGTFL 125 (183)
Q Consensus 97 LP~ig~~l~-~~f~~n~~~Il~lA~~Gt~i 125 (183)
+--+|.++| +++|+.-+.-+.++.+..++
T Consensus 290 maaiGl~t~~~~l~~~G~kp~~~g~i~~~~ 319 (335)
T TIGR00698 290 MAALGLTTNVSAVKKAGVKPLFASYAGYLW 319 (335)
T ss_pred HHHHhhcCcHHHHHHcCchHHHHHHHHHHH
Confidence 444599999 99998888777777666444
No 74
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=26.29 E-value=5.1e+02 Score=23.74 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=18.8
Q ss_pred cC-CHHHHHHhhhhcc---CccHHHHHHHHhhcC
Q 037375 145 RL-PFVECLMFGALIS---ATDPITVLSIFQGTC 174 (183)
Q Consensus 145 ~~-~l~~allfGAiiS---aTDPVAVlai~~~l~ 174 (183)
++ |...+..=|..-| -|--|||+|--+|++
T Consensus 377 ~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~ 410 (438)
T COG3493 377 GFYPVEAAITAGLCMANMGGTGDVAVLSAADRME 410 (438)
T ss_pred cCCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence 55 4445544445543 577788888777765
No 75
>COG2985 Predicted permease [General function prediction only]
Probab=24.47 E-value=1.3e+02 Score=28.39 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc-----cCchhHHHHHHhhHhhccccccc
Q 037375 1 MTGEALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHKFY-----YLPEASASLLIGLIVSALTNISN 75 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~ll~l~~l~~~~~~~~~~~-----~lp~s~~lil~Gl~~G~i~~~~~ 75 (183)
+.|++-..+...+..||.+++.++ ++++=+..-+.+.++++.+ ..... ++-.+...++.|+++|.+-....
T Consensus 341 vvg~~~~v~~~~~~lG~~~~~lq~--~~lLp~~ig~~LGvllGsI--p~~~pg~~s~~LG~aGGpLivaLiLG~ig~iGp 416 (544)
T COG2985 341 VVGRARRVKAVADVLGNAQIKLQQ--VDLLPFAIGLGLGVLLGSI--PFPLPGPGSFKLGNAGGPLIVALILGFIGAIGP 416 (544)
T ss_pred eccchHHHHHHHHHhccccceeee--eccHHHHHHHHHHHhheee--EeccCCCceEeecccccHHHHHHHHHHhcccCc
Q ss_pred ccccccccccc-chhHHHHHHHHHHH----HHhhchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHH
Q 037375 76 TETNIRYSFSF-NELICSVATCLLMI----LFSWQKPFFSNFGAIVTFAIFGTFLASMVTGILVYLGGVMFVMYRLPFVE 150 (183)
Q Consensus 76 ~~~~~~~~~~~-~~~~f~~~l~LP~i----g~~l~~~f~~n~~~Il~lA~~Gt~is~~~~g~~~~~~~~~~~~~~~~l~~ 150 (183)
..--+...... -.|+...++ +--. |..+...+-..-..++.++.+-|+++.++++...+++ +-.-+
T Consensus 417 l~w~mP~~An~~lrelGl~lF-LA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v--------~kmn~ 487 (544)
T COG2985 417 LTWFMPPGALLALRELGLALF-LAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYV--------LKMNW 487 (544)
T ss_pred eEEEcChhHHHHHHHHHHHHH-HHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHH--------HhccH
Q ss_pred HHHhhhhc-cCccHHH
Q 037375 151 CLMFGALI-SATDPIT 165 (183)
Q Consensus 151 allfGAii-SaTDPVA 165 (183)
..++|++. |-|||-+
T Consensus 488 ~~l~G~laGs~T~ppa 503 (544)
T COG2985 488 LLLCGALAGSMTDPPA 503 (544)
T ss_pred HHHhhHHhcCCCChHH
No 76
>PRK03818 putative transporter; Validated
Probab=24.05 E-value=6.1e+02 Score=23.84 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=12.4
Q ss_pred hHHHHHHhhHhhcccc
Q 037375 57 ASASLLIGLIVSALTN 72 (183)
Q Consensus 57 s~~lil~Gl~~G~i~~ 72 (183)
+...++.|+++|.+-.
T Consensus 403 ~~G~L~~gl~~g~~~~ 418 (552)
T PRK03818 403 AGGPLIVALILGRIGS 418 (552)
T ss_pred chHHHHHHHHHHhccC
Confidence 6678888999998643
No 77
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=23.93 E-value=1e+02 Score=22.41 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037375 116 VTFAIFGTFLASMVTGILVY 135 (183)
Q Consensus 116 l~lA~~Gt~is~~~~g~~~~ 135 (183)
..++.+||+++++++|++=-
T Consensus 75 wilGlvgTi~gsliia~lr~ 94 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRT 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988644
No 78
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=23.91 E-value=1.9e+02 Score=22.46 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHhhH
Q 037375 35 MLVLSFILGHVLRRHKFYYLPEASASLLIGLI 66 (183)
Q Consensus 35 ll~l~~l~~~~~~~~~~~~lp~s~~lil~Gl~ 66 (183)
++++.+....++|||+-.+-.+-.+..++.++
T Consensus 27 l~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll 58 (149)
T PF11694_consen 27 LLVLIFFFIKYLRNRLDTKYRDLSIIALLLLL 58 (149)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 44444456677788876777765555444433
No 79
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=23.30 E-value=3.2e+02 Score=20.29 Aligned_cols=15 Identities=20% Similarity=0.312 Sum_probs=8.9
Q ss_pred cCchhHHHHHHhhHh
Q 037375 53 YLPEASASLLIGLIV 67 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~ 67 (183)
.-..+..++++|++.
T Consensus 72 ~~~~~~~llilG~L~ 86 (115)
T PF05915_consen 72 DRDRGWALLILGILC 86 (115)
T ss_pred CCcccchHHHHHHHH
Confidence 355566666666654
No 80
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=22.00 E-value=64 Score=26.16 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=19.4
Q ss_pred cCCHHHHHHhhhhccCccHHHHHH
Q 037375 145 RLPFVECLMFGALISATDPITVLS 168 (183)
Q Consensus 145 ~~~l~~allfGAiiSaTDPVAVla 168 (183)
+.-....+++||+++|.||++-+-
T Consensus 188 r~~~~~~~iiaa~itPpD~~sql~ 211 (215)
T PF00902_consen 188 RYAYFGIFIIAAFITPPDPISQLL 211 (215)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHH
Confidence 445578899999999999998553
No 81
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.87 E-value=1.5e+02 Score=22.88 Aligned_cols=28 Identities=25% Similarity=0.308 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCch
Q 037375 29 ILLQIMMLVLSFILGHVLRRHKFYYLPE 56 (183)
Q Consensus 29 i~~~i~ll~l~~l~~~~~~~~~~~~lp~ 56 (183)
++.+.+++.++....++.+..|.+++|-
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~ 133 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPL 133 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCch
Confidence 3334444555555555556666677774
No 82
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=21.57 E-value=1e+02 Score=28.11 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=14.9
Q ss_pred HHHHHhhhhccCccHHHH
Q 037375 149 VECLMFGALISATDPITV 166 (183)
Q Consensus 149 ~~allfGAiiSaTDPVAV 166 (183)
.-+++|||.-=+||||+.
T Consensus 324 sGgl~fGAfFMATDpVTS 341 (405)
T PRK05349 324 LGGFAFGMVFMATDPVSA 341 (405)
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 367889999999999873
No 83
>COG3329 Predicted permease [General function prediction only]
Probab=21.29 E-value=5.1e+02 Score=23.07 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=55.8
Q ss_pred cCchhHHHHHHhhHhhccccccccccccccccccchhHHHHHHHHHHH--HHhhc---hhHHhhHHHHHHHHHHHHHHHH
Q 037375 53 YLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMI--LFSWQ---KPFFSNFGAIVTFAIFGTFLAS 127 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~~~~~~~~~~~~~~~~~~f~~~l~LP~i--g~~l~---~~f~~n~~~Il~lA~~Gt~is~ 127 (183)
.+-.+..+++.|+++|++..-... +..+ +|-..+|-..+|+-.+ |..-. ++.|+.-.-.+.++++.=++..
T Consensus 215 flnpal~lllggl~iGlitGe~g~--~vl~--~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fgllaPil~g 290 (372)
T COG3329 215 FLNPALVLLLGGLAIGLITGEQGE--SVLK--PFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFGLLAPILHG 290 (372)
T ss_pred HcCchHHHHHHHHHHhheeccCch--hhhh--hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHHHHHHHHHH
Confidence 466788899999999987643221 1111 3445566566554444 43322 3566555555556655444433
Q ss_pred HHHHHHHHHHhhhhccccCCHHHHHHhhhhccCccHHHHHHHHh
Q 037375 128 MVTGILVYLGGVMFVMYRLPFVECLMFGALISATDPITVLSIFQ 171 (183)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~l~~allfGAiiSaTDPVAVlai~~ 171 (183)
. +|...-+.. ....+++..-..+++-+-++-.=.|+=+.+|
T Consensus 291 ~-ig~~lg~~a--~y~tgfs~g~~vllAVlaaSaSyIa~PaalR 331 (372)
T COG3329 291 F-IGLLLGMIA--GYPTGFSDGGVVLLAVLAASASYIAVPAALR 331 (372)
T ss_pred H-HHHHHHHHh--cccccCCCcchHHHHHHhcchhhccccHHHh
Confidence 2 222222211 0123334444666665554444444444444
No 84
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=21.24 E-value=3.4e+02 Score=24.58 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=14.0
Q ss_pred cCchhHHHHHHhhHhhccccc
Q 037375 53 YLPEASASLLIGLIVSALTNI 73 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~ 73 (183)
++|.-.++.+.|++.|.+...
T Consensus 284 R~~wL~v~~~~~~~t~~ii~~ 304 (449)
T TIGR00400 284 RIIWLLVLLVSSTFTATIISN 304 (449)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 466666777777777766543
No 85
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=21.18 E-value=3.8e+02 Score=21.35 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=28.5
Q ss_pred CCchhhhhhhHHHHHHHHHHH--HHHHHHHHHHhcccccCchhHHHHHHhhHhhcc
Q 037375 17 SPAKEQQAAGVGILLQIMMLV--LSFILGHVLRRHKFYYLPEASASLLIGLIVSAL 70 (183)
Q Consensus 17 ~~~~~~~~~~~~i~~~i~ll~--l~~l~~~~~~~~~~~~lp~s~~lil~Gl~~G~i 70 (183)
+.|.+|+..+..++..+.+.. ++.+..|..|+ ++=|.-.+....|.+.+..
T Consensus 38 ~~e~~~~F~a~a~f~~l~lv~Gvvaav~~W~~R~---~RGP~~~~~l~~Gsv~aa~ 90 (167)
T PF10821_consen 38 GGESEHFFDADALFVLLGLVLGVVAAVAVWLWRR---RRGPVMVLALAVGSVAAAA 90 (167)
T ss_pred CCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHh---hcCcHHHHHHHHHHHHHHH
Confidence 344466677776665444322 23344566543 3467777776777666653
Done!