Query 037375
Match_columns 183
No_of_seqs 119 out of 1233
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0e_A Sodium/hydrogen exchang 99.1 7.1E-12 2.4E-16 73.1 -0.7 28 147-174 2-29 (33)
2 1y4e_A Sodium/hydrogen exchang 94.2 0.0032 1.1E-07 34.5 -1.6 19 86-105 2-24 (27)
3 2htg_A NHE-1, NHE1 isoform of 28.8 10 0.00036 20.5 -0.2 11 173-183 2-12 (28)
4 4b4a_A TATC, SEC-independent p 19.7 51 0.0017 26.6 2.1 22 146-168 190-211 (249)
5 2q67_A Potassium channel prote 16.9 2.6E+02 0.0089 19.1 5.6 30 123-157 30-59 (114)
6 3vou_A ION transport 2 domain 15.5 3.2E+02 0.011 19.4 5.9 30 123-157 33-62 (148)
7 2l34_A TYRO protein tyrosine k 8.9 2.9E+02 0.0099 15.1 2.8 19 120-138 13-31 (33)
8 4b19_A PEPA1; toxin, toxin apo 8.5 89 0.0031 17.0 0.3 18 121-138 8-25 (30)
9 2kog_A Vesicle-associated memb 8.0 4.9E+02 0.017 18.2 4.2 22 101-122 84-106 (119)
10 3hd7_A Vesicle-associated memb 7.8 2.7E+02 0.0092 18.5 2.6 25 101-125 56-81 (91)
No 1
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=99.08 E-value=7.1e-12 Score=73.07 Aligned_cols=28 Identities=39% Similarity=0.736 Sum_probs=26.3
Q ss_pred CHHHHHHhhhhccCccHHHHHHHHhhcC
Q 037375 147 PFVECLMFGALISATDPITVLSIFQGTC 174 (183)
Q Consensus 147 ~l~~allfGAiiSaTDPVAVlai~~~l~ 174 (183)
+|.+|++|||++||||||||+++||+++
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~ 29 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIH 29 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcC
Confidence 5678999999999999999999999987
No 2
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=94.21 E-value=0.0032 Score=34.52 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHH----HHhhc
Q 037375 86 FNELICSVATCLLMI----LFSWQ 105 (183)
Q Consensus 86 ~~~~~f~~~l~LP~i----g~~l~ 105 (183)
|++++||+++ |||| ||+++
T Consensus 2 ~~~~~FF~~L-LPPII~~aGy~l~ 24 (27)
T 1y4e_A 2 LQSDVFFLFL-LPPIILDAGYFLP 24 (27)
T ss_dssp CCSCSSHHHH-SCCSSHHHHTTGG
T ss_pred Cccceeeeec-cCccEeecccccc
Confidence 5789999999 9998 89988
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=28.81 E-value=10 Score=20.52 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=8.2
Q ss_pred cCcccceeccC
Q 037375 173 TCALLFCLLTG 183 (183)
Q Consensus 173 l~a~l~~lvfg 183 (183)
++++||.++||
T Consensus 2 V~~~L~~lvfG 12 (28)
T 2htg_A 2 INELLHILVFG 12 (28)
T ss_dssp CSSTTHHHHTT
T ss_pred CCceEEEEEEe
Confidence 35678888887
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=19.66 E-value=51 Score=26.55 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=16.9
Q ss_pred CCHHHHHHhhhhccCccHHHHHH
Q 037375 146 LPFVECLMFGALISATDPITVLS 168 (183)
Q Consensus 146 ~~l~~allfGAiiSaTDPVAVla 168 (183)
.-...++++||+++| ||++=+-
T Consensus 190 ~~iv~~~v~aAiiTP-D~~sq~l 211 (249)
T 4b4a_A 190 YFIVIAFVIGAIIAP-DVSTQVL 211 (249)
T ss_dssp HHHHHHHHHHHHHCS-SHHHHHH
T ss_pred HHHHHHHHHHHHHCC-cHHHHHH
Confidence 344678899999999 9987543
No 5
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=16.92 E-value=2.6e+02 Score=19.07 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhh
Q 037375 123 TFLASMVTGILVYLGGVMFVMYRLPFVECLMFGAL 157 (183)
Q Consensus 123 t~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAi 157 (183)
.++...+.|...|... -++++.+++-+..+
T Consensus 30 ~~~~~~~~g~~~~~~~-----e~~~~~~a~y~~~~ 59 (114)
T 2q67_A 30 LTILTLISGTIFYSTV-----EGLRPIDALYFSVV 59 (114)
T ss_dssp HHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHH
Confidence 3334455566666542 36788888877654
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=15.53 E-value=3.2e+02 Score=19.37 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCHHHHHHhhhh
Q 037375 123 TFLASMVTGILVYLGGVMFVMYRLPFVECLMFGAL 157 (183)
Q Consensus 123 t~is~~~~g~~~~~~~~~~~~~~~~l~~allfGAi 157 (183)
.++...+.|...|.. .-++++.+|+-|..+
T Consensus 33 ~~~~~~~~g~~~~~~-----~e~~~~~~a~y~~~~ 62 (148)
T 3vou_A 33 LTFLTLTSGTIFYST-----VEGLRPLDALYFSVV 62 (148)
T ss_dssp HHHHHHHHHHHHHHH-----TSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHH
Confidence 333344555555553 236788888877644
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=8.93 E-value=2.9e+02 Score=15.07 Aligned_cols=19 Identities=21% Similarity=0.600 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037375 120 IFGTFLASMVTGILVYLGG 138 (183)
Q Consensus 120 ~~Gt~is~~~~g~~~~~~~ 138 (183)
++|.++.+..++...|++.
T Consensus 13 Vvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 13 VVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred eHHHHHHHHHHHHHHhhee
Confidence 4566777777788877753
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=8.51 E-value=89 Score=17.04 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037375 121 FGTFLASMVTGILVYLGG 138 (183)
Q Consensus 121 ~Gt~is~~~~g~~~~~~~ 138 (183)
+++++|..+++...||+.
T Consensus 8 ia~visGcivalF~hWL~ 25 (30)
T 4b19_A 8 IAPVISGCAIAFFSYWLS 25 (30)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356778888888888874
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=7.97 E-value=4.9e+02 Score=18.18 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=15.5
Q ss_pred HHhhc-hhHHhhHHHHHHHHHHH
Q 037375 101 LFSWQ-KPFFSNFGAIVTFAIFG 122 (183)
Q Consensus 101 g~~l~-~~f~~n~~~Il~lA~~G 122 (183)
+-+++ +..++|.+..+.++++.
T Consensus 84 A~kl~rkmwwkn~K~~iii~~iv 106 (119)
T 2kog_A 84 AAKLKRKYWWKNLKMMIILGVIC 106 (119)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678 88888888777655443
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=7.78 E-value=2.7e+02 Score=18.52 Aligned_cols=25 Identities=8% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHhhc-hhHHhhHHHHHHHHHHHHHH
Q 037375 101 LFSWQ-KPFFSNFGAIVTFAIFGTFL 125 (183)
Q Consensus 101 g~~l~-~~f~~n~~~Il~lA~~Gt~i 125 (183)
+-.++ +..++|.+..+.++++++++
T Consensus 56 A~~l~rkmwwkn~K~~iii~~iv~~i 81 (91)
T 3hd7_A 56 AAKLKRKYWWKNLKMMIILGVICAII 81 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677 78888888777766555444
Done!