Query 037375
Match_columns 183
No_of_seqs 119 out of 1233
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 19:53:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037375.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037375hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 19.9 1.1E+02 0.0082 23.7 6.6 18 56-73 4-21 (405)
2 d2yvxa3 f.57.1.1 (A:276-448) M 9.7 30 0.0022 24.5 0.1 22 53-74 10-31 (173)
3 d1hmja_ d.78.1.1 (A:) RNA poly 8.1 52 0.0038 19.6 0.7 9 158-166 28-36 (68)
4 d1eika_ d.78.1.1 (A:) RNA poly 7.5 61 0.0045 19.7 0.8 9 158-166 39-47 (77)
5 d1yuaa2 g.41.3.3 (A:66-122) Pr 6.3 98 0.0071 17.9 1.3 13 7-19 7-19 (57)
6 d2abqa1 c.72.1.1 (A:1-306) Fru 6.0 3.5E+02 0.026 18.8 4.9 31 144-174 261-299 (306)
7 d1dzfa2 d.78.1.1 (A:144-215) E 5.9 83 0.0061 18.8 0.8 9 158-166 35-43 (72)
8 d1q90r_ f.23.12.1 (R:) ISP sub 5.6 2.4E+02 0.017 14.8 4.4 28 109-136 9-36 (39)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.3 92 0.0067 17.7 0.7 14 35-48 49-62 (64)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.0 3E+02 0.022 15.3 4.1 26 23-48 6-31 (57)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=19.95 E-value=1.1e+02 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=11.4
Q ss_pred hhHHHHHHhhHhhccccc
Q 037375 56 EASASLLIGLIVSALTNI 73 (183)
Q Consensus 56 ~s~~lil~Gl~~G~i~~~ 73 (183)
.-...++.|+++|.....
T Consensus 4 rili~lv~Gi~~G~~~~~ 21 (405)
T d2nwwa1 4 KILIGLILGAIVGLILGH 21 (405)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 345566777777776543
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.72 E-value=30 Score=24.53 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=17.4
Q ss_pred cCchhHHHHHHhhHhhcccccc
Q 037375 53 YLPEASASLLIGLIVSALTNIS 74 (183)
Q Consensus 53 ~lp~s~~lil~Gl~~G~i~~~~ 74 (183)
|+|.-.+.++.|+..+.+....
T Consensus 10 RlpWL~i~l~~~~~~a~ii~~F 31 (173)
T d2yvxa3 10 RVRWLVILILTGMVTSSILQGF 31 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888876543
No 3
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.05 E-value=52 Score=19.57 Aligned_cols=9 Identities=33% Similarity=0.571 Sum_probs=7.3
Q ss_pred ccCccHHHH
Q 037375 158 ISATDPITV 166 (183)
Q Consensus 158 iSaTDPVAV 166 (183)
|..|||++-
T Consensus 28 I~~~DPva~ 36 (68)
T d1hmja_ 28 IYEDDPVIQ 36 (68)
T ss_pred ccccCHHHH
Confidence 578999985
No 4
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.51 E-value=61 Score=19.71 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=7.0
Q ss_pred ccCccHHHH
Q 037375 158 ISATDPITV 166 (183)
Q Consensus 158 iSaTDPVAV 166 (183)
|+.+||+|.
T Consensus 39 I~~~DPva~ 47 (77)
T d1eika_ 39 IKTTDPVAK 47 (77)
T ss_dssp CBTTSHHHH
T ss_pred ecccCHhhh
Confidence 578899884
No 5
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=98 Score=17.88 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCc
Q 037375 7 QISPANDPHGSPA 19 (183)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (183)
-.+|..|++||+.
T Consensus 7 ~~AP~~D~dGn~~ 19 (57)
T d1yuaa2 7 ADAPQQDPEGNKT 19 (57)
T ss_dssp HHSCSSCTTCCCE
T ss_pred hcCCccCCCCCEe
Confidence 3578889888874
No 6
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}
Probab=5.98 E-value=3.5e+02 Score=18.76 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=21.8
Q ss_pred ccCCHHHHHHhhhhcc--------CccHHHHHHHHhhcC
Q 037375 144 YRLPFVECLMFGALIS--------ATDPITVLSIFQGTC 174 (183)
Q Consensus 144 ~~~~l~~allfGAiiS--------aTDPVAVlai~~~l~ 174 (183)
-++++.+|+.+|+..+ ++++-.+..+.++++
T Consensus 261 ~g~~~~~al~~a~a~aa~~~~~~G~~~~~~v~~~~~~~~ 299 (306)
T d2abqa1 261 EGKSLEDAVPFAVAAGSATAFSDGFCTREEVERLQQQLQ 299 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 3789999999986653 355666666666665
No 7
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.94 E-value=83 Score=18.77 Aligned_cols=9 Identities=33% Similarity=0.814 Sum_probs=6.8
Q ss_pred ccCccHHHH
Q 037375 158 ISATDPITV 166 (183)
Q Consensus 158 iSaTDPVAV 166 (183)
|..+||+|-
T Consensus 35 I~~~DPva~ 43 (72)
T d1dzfa2 35 IQRADPVAL 43 (72)
T ss_dssp ECTTCHHHH
T ss_pred ecccCHhhh
Confidence 578899874
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.56 E-value=2.4e+02 Score=14.81 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=16.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037375 109 FSNFGAIVTFAIFGTFLASMVTGILVYL 136 (183)
Q Consensus 109 ~~n~~~Il~lA~~Gt~is~~~~g~~~~~ 136 (183)
|||+.-.++++.++........+...|+
T Consensus 9 rR~~MNLll~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 9 KRNIMNLILAGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhhhhhccceeEEe
Confidence 6677777777766555545544444443
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.30 E-value=92 Score=17.70 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 037375 35 MLVLSFILGHVLRR 48 (183)
Q Consensus 35 ll~l~~l~~~~~~~ 48 (183)
.+.++....++.|+
T Consensus 49 ~~~~~~~~~~~f~r 62 (64)
T d2iuba2 49 MGVIAVIMVVYFKK 62 (64)
T ss_dssp HHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444455443
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.04 E-value=3e+02 Score=15.32 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 037375 23 QAAGVGILLQIMMLVLSFILGHVLRR 48 (183)
Q Consensus 23 ~~~~~~i~~~i~ll~l~~l~~~~~~~ 48 (183)
|......+++.+++++.....++.++
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555555555555566666654
Done!