RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 037375
         (183 letters)



>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein,
           NHE1; NMR {Homo sapiens}
          Length = 33

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 11/22 (50%), Positives = 19/22 (86%)

Query: 150 ECLMFGALISATDPITVLSIFQ 171
           + L+FG++ISA DP+ VL++F+
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFE 26


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.11
 Identities = 10/85 (11%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 54  LP-EASAS--LLIGLIVSALTNISNTETNIRYSFSFNELICSVATCLLMILFSWQKPFFS 110
           LP E   +    + +I  ++ +   T  N ++  + ++L   + + L ++  +  +  F 
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 111 NFGAIVTFAIF--GTFLASMVTGIL 133
                   ++F     + +++  ++
Sbjct: 377 R------LSVFPPSAHIPTILLSLI 395



 Score = 29.4 bits (65), Expect = 0.76
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 33/108 (30%)

Query: 4   EALQISPANDPHGSPAKEQQAAGVGILLQIMMLVLSFILGHVLRRHK--FYYLPEASASL 61
           E L  +P                           LS I    +R     +      +   
Sbjct: 321 EVLTTNP-------------------------RRLSII-AESIRDGLATWDNWKHVNCDK 354

Query: 62  LIGLIVSALTNISNTETNIRY-SFS-FNELICSVATCLLMILFSWQKP 107
           L  +I S+L  +   E    +   S F      + T LL ++  W   
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLI--WFDV 399


>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
          Length = 196

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 32  QIMMLVLSFILGHVLRRHKFYYLPEASASLLIGLIVSALTNISNTETNIRYSFSFNELIC 91
           QI+  +L+ ++G   +      + + SA ++  +                YS S+  L  
Sbjct: 87  QILPSLLTCVIG---KSIVDDDVRKMSADIVKYIY-------------DTYSRSYKTLAP 130

Query: 92  SVATCLLMILFSWQKPFFSNFGAIVTFAIFGT 123
            V   L  +     +   S +GA+   +I   
Sbjct: 131 RVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 3.9
 Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 45/172 (26%)

Query: 36  LVLSFILGHVLRRHKFYYLPEASASLLIGL---------------IVSALTNISNTETNI 80
           LV  F LG+V    +   + +    L + L               + + L   ++T    
Sbjct: 60  LVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118

Query: 81  RYSFSFNELICSVATCLLMILFSWQKPFFSNF------GAIVTFAIFGTFLASMVTG--- 131
                  ELI +  T  +M    + K   S        G     AIFG        G   
Sbjct: 119 TK-----ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--------GQGN 165

Query: 132 ILVYLGGV--MFVMYRLPFVECL---MFGALIS-ATDPITVLSIFQGTCALL 177
              Y   +  ++  Y    V  L       L       +    +F     +L
Sbjct: 166 TDDYFEELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,669,479
Number of extensions: 147300
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 24
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (25.0 bits)