BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037376
         (612 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D73|A Chain A, Crystal Structure Analysis Of Susb
 pdb|2D73|B Chain B, Crystal Structure Analysis Of Susb
 pdb|2ZQ0|A Chain A, Crystal Structure Of Susb Complexed With Acarbose
 pdb|2ZQ0|B Chain B, Crystal Structure Of Susb Complexed With Acarbose
          Length = 738

 Score = 33.1 bits (74), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 191 DITLYFYPADVDINDHEYDSDVLASGYGSKADLIWPISRNLPLND-GLWFEIENSTDIGV 249
           D   ++ P D D  +++Y    L+   G   + I P S   P +  G+   +   TD G+
Sbjct: 180 DHIAFWIPGDYDTQEYDYTISRLSEIRGLMKEAITPNSSQTPFSQTGVQTALMMKTDDGL 239

Query: 250 KEFVIPQNVYRAVLEVYVSFHEN----DEFWYSNVPNDYIAANNLTDTPGNGPFREVVVS 305
             ++   N++ A L  Y   H N    +  + S +  D         TP N P+R ++VS
Sbjct: 240 --YI---NLHEAALVDYSCMHLNLDDKNMVFESWLTPDAKGDKGYMQTPCNTPWRTIIVS 294

Query: 306 LDGEVV-----------------GAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEI 348
            D   +                  A W   V + G    + W  IT  GS+    Y  E+
Sbjct: 295 DDARNILASRITLNLNEPCKIADAASWVKPVKYIG----VWWDMITGKGSW---AYTDEL 347

Query: 349 TPF-LGNLLDGKTHKFGFSVTNALNV-WYID 377
           T   LG     KT   G    N  NV  YID
Sbjct: 348 TSVKLGETDYSKTKPNGKHSANTANVKRYID 378


>pdb|2JKA|A Chain A, Native Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron
 pdb|2JKA|B Chain B, Native Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron
 pdb|2JKE|A Chain A, Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Deoxynojirimycin
 pdb|2JKE|B Chain B, Structure Of A Family 97 Alpha-glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Deoxynojirimycin
 pdb|2JKP|A Chain A, Structure Of A Family 97 Alpha-Glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Castanospermine
 pdb|2JKP|B Chain B, Structure Of A Family 97 Alpha-Glucosidase From
           Bacteroides Thetaiotaomicron In Complex With
           Castanospermine
          Length = 727

 Score = 33.1 bits (74), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 191 DITLYFYPADVDINDHEYDSDVLASGYGSKADLIWPISRNLPLND-GLWFEIENSTDIGV 249
           D   ++ P D D  +++Y    L+   G   + I P S   P +  G+   +   TD G+
Sbjct: 169 DHIAFWIPGDYDTQEYDYTISRLSEIRGLMKEAITPNSSQTPFSQTGVQTALMMKTDDGL 228

Query: 250 KEFVIPQNVYRAVLEVYVSFHEN----DEFWYSNVPNDYIAANNLTDTPGNGPFREVVVS 305
             ++   N++ A L  Y   H N    +  + S +  D         TP N P+R ++VS
Sbjct: 229 --YI---NLHEAALVDYSCMHLNLDDKNMVFESWLTPDAKGDKGYMQTPCNTPWRTIIVS 283

Query: 306 LDGEVV-----------------GAVWPFTVVFTGGINPLLWRPITAIGSFDLPTYDIEI 348
            D   +                  A W   V + G    + W  IT  GS+    Y  E+
Sbjct: 284 DDARNILASRITLNLNEPCKIADAASWVKPVKYIG----VWWDMITGKGSW---AYTDEL 336

Query: 349 TPF-LGNLLDGKTHKFGFSVTNALNV-WYID 377
           T   LG     KT   G    N  NV  YID
Sbjct: 337 TSVKLGETDYSKTKPNGKHSANTANVKRYID 367


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,538,289
Number of Sequences: 62578
Number of extensions: 867266
Number of successful extensions: 1845
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1842
Number of HSP's gapped (non-prelim): 9
length of query: 612
length of database: 14,973,337
effective HSP length: 105
effective length of query: 507
effective length of database: 8,402,647
effective search space: 4260142029
effective search space used: 4260142029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)