BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037377
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
NTDG + STGV I+G T+K DDCI+I G F C GHG+SIGS+G ++
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGG-TCSGGHGLSIGSVGG-RDD 209
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQN-PIIVDQNYCPN 308
+ V+N+T+ ++ + S NGVRIK+ + + V + + N+ ++ + + I+++Q+Y N
Sbjct: 210 NTVKNVTISDSTVSNSANGVRIKTIYKETGD-VSEITYSNIQLSGITDYGIVIEQDY-EN 267
Query: 309 NQGCPRQSSGVKISQVTYRNIKGT 332
S+G+ I+ VT + GT
Sbjct: 268 GSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
NTD V +STGV I+G +K DDC++I GT N+ C GHG+SIGS+G ++
Sbjct: 153 NTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGGR-SD 210
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV-QNPIIVDQNYCPN 308
+ V+ +T+ N+ SDNGVRIK+ + + S V V + + ++N+ + I+++Q+Y N
Sbjct: 211 NTVKTVTISNSKIVNSDNGVRIKTVSGATGS-VSGVTYSGITLSNIAKYGIVIEQDY-EN 268
Query: 309 NQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATS 368
++GV I+ +T I G+ + + + C + + +T ++ +
Sbjct: 269 GSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGKKS--T 326
Query: 369 SCKNI 373
C NI
Sbjct: 327 KCSNI 331
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 37/263 (14%)
Query: 118 GTFDGKG--------AGFWA------CRKSGKNCPAGASSITFNWANNILISGLTSINSQ 163
GT DG+G +W +K +N P I N + N + ++ INS
Sbjct: 117 GTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP---RLIQINKSKNFTLYNVSLINSP 173
Query: 164 QTHLXXXXXXXXXXXXXXXXAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIG---- 219
H+ P + NTDGI +S +TI + TGDD ++I
Sbjct: 174 NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKG 233
Query: 220 -PGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPS 278
TRN+ + + G GHG+SIGS GV N+T+ + G+ NG+RIKS + +
Sbjct: 234 RAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKS-DKSA 287
Query: 279 NSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGV-KISQVTYRNIKGTSKTPE 337
V V + N++M NV PI++D Y ++ S V S +T++++ TS+T
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVY------EKKEGSNVPDWSDITFKDV--TSETKG 339
Query: 338 AVTFDCSPTNPCRGIRLHDIKLT 360
V + + + ++KLT
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKLT 362
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
NTD + ST VTI+G T+ DDC+++ G N++ + C GHG+SIGS+G ++
Sbjct: 157 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGR-SD 214
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV-QNPIIVDQNYCPN 308
+ V+N+T +++ SDNGVRIK+ + S V +V ++++ + ++ + I+V QNY
Sbjct: 215 NTVKNVTFVDSTIINSDNGVRIKTNIDTTGS-VSDVTYKDITLTSIAKYGIVVQQNYGDT 273
Query: 309 NQGCPRQSSGVKISQVTYRNIKGT 332
+ ++GV I+ N+ G+
Sbjct: 274 SS---TPTTGVPITDFVLDNVHGS 294
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 5/184 (2%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
NTD V S GV I + DDC+++ G N++ C GHG+SIGS+G D +
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSN 235
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNN 309
+ V+N+T+ ++ + S+N VRIK+ + + S V + + N++M+ + + +V Q +
Sbjct: 236 NVVKNVTIEHSTVSNSENAVRIKTISGATGS-VSEITYSNIVMSGISDYGVVIQQDYEDG 294
Query: 310 QGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSS 369
+ + ++GV I V ++ G+ + + + C D+K+T ++ ++
Sbjct: 295 KPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKS--TA 352
Query: 370 CKNI 373
CKN
Sbjct: 353 CKNF 356
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 15/186 (8%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLG--KDF 247
NTDG + +S VT+ + DDC+++ GT N+ ++N+ C GHG+SIGS+G D
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVGGKSDN 223
Query: 248 NEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQN-PIIVDQNYC 306
DGVQ L++ S NG RIKS + + + + NV +QN+ + N+ + V Q+Y
Sbjct: 224 VVDGVQ---FLSSQVVNSQNGCRIKSNSGATGT-INNVTYQNIALTNISTYGVDVQQDYL 279
Query: 307 PNNQGCP--RQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNR 364
G P + ++GVKIS + + + GT + F C G +T +
Sbjct: 280 ---NGGPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGGK 336
Query: 365 AATSSC 370
TSSC
Sbjct: 337 --TSSC 340
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 132/340 (38%), Gaps = 28/340 (8%)
Query: 25 NVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKA-AEFRGPCRNRVTL 83
N+++YGA D TD AWA AC+S +Y+P G Y + G + +
Sbjct: 22 NILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVTLTG--GSATAI 76
Query: 84 QIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGF-WACRKSGKNCPAGAS 142
Q+DG I Y SG I + T G GF + G GA
Sbjct: 77 QLDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY---GAR 128
Query: 143 SITFNWANNILISGLTSINSQQTHLXXXXXXXXXXXXXXXXAPDQSPNTDGIHVQASTGV 202
+ + + + +++ H ++ DGI V S +
Sbjct: 129 ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSN-I 186
Query: 203 TITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVF 262
+ V + D+C+++ N+ + +I C G ++GSLG D + V +I N
Sbjct: 187 WVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYT 243
Query: 263 TGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKIS 322
S+ IKS + V NVL +N I + + +D + + GV+++
Sbjct: 244 WSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDIDGYW---SSMTAVAGDGVQLN 298
Query: 323 QVTYRNIKGTS---KTPEAVTFDCSPTNPCRGIRLHDIKL 359
+T +N KGT T + CS T PC + L DI +
Sbjct: 299 NITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 12/158 (7%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249
NTDG V A+ VTI +K DDCI+I G F NN +C GHG+SIGS+ +
Sbjct: 151 NTDGFDVSANN-VTIQNCIVKNQDDCIAINDGNNIRFENN-QCSGGHGISIGSIATGKH- 207
Query: 250 DGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQ-NLIMNNVQNPIIVDQNYCPN 308
V N+ + T S GVRIK+ +++ V V + N I + +++ Q+Y P+
Sbjct: 208 --VSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSY-PD 264
Query: 309 NQGCPRQSSGVKISQVTYRNIKGTSKTPEA---VTFDC 343
+ G P +G S V + T K A VT +C
Sbjct: 265 DVGNP--GTGAPFSDVNFTGGATTIKVNNAATRVTVEC 300
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 121/342 (35%), Gaps = 80/342 (23%)
Query: 25 NVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGP--CRNRVT 82
N++ +GA+ DGRTD ++ F +A + I VP+G +L GP ++ +
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLI-VPEGVFLT------GPIHLKSNIE 81
Query: 83 LQIDGTI-----------VAPTNYWALGNSGYWILFIKID--RLSVIG-GTFDGKGAGF- 127
L + GTI V T + + Y L +D +++ G G DG
Sbjct: 82 LHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEH 141
Query: 128 ---WACRKS--------------------------------GKNCPAGASSITFNWANNI 152
W +K GK S + F N+
Sbjct: 142 WWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNV 201
Query: 153 LISGLTSINSQQTHLXXXXXXXXXXXXXXXXAPDQSPNTDGIHVQASTGVTITGVTLKTG 212
L+ G+ INS + + PN DGI ++ + I TG
Sbjct: 202 LVEGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEKCRFDTG 259
Query: 213 DDCISIG------------PGTRNLFMNNIKCGPGH--GVSIGSLGKDFNEDGVQNITLL 258
DD + I P L +N+ G+ IGS GV+N+
Sbjct: 260 DDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMS----GGVRNVVAR 315
Query: 259 NAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPII 300
N V+ + +R+K+ +R ++ N+ F + + NV +I
Sbjct: 316 NNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVI 356
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRN------------LFMNNIKCGPGHG 237
N DGI S V + TGDDCI+ GT LF N + G G
Sbjct: 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI 438
Query: 238 VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQN 297
V+ G +++I N V +D G+R KS + RNV F+N M ++
Sbjct: 439 VTGSHTGA-----WIEDILAENNVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAK 492
Query: 298 PIIV-DQNYCPNNQG-------CPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPC 349
++V +Y +N P Q + VT N G + + E + D +
Sbjct: 493 QVMVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPSIE-IKGDTANKAWH 551
Query: 350 RGIRLHDIKLTYMNRAATSSCKN 372
R + +++++L + A S ++
Sbjct: 552 RLVHVNNVQLNNVTPTAISDLRD 574
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 VITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLI 68
V TYGAK DG TD + F KA S +YVP G +++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMV 61
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 26 VITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLI 68
V TYGAK DG TD + F KA S +YVP G +++
Sbjct: 25 VKTYGAKGDGVTDDIRAFEKAIESGF------PVYVPYGTFMV 61
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 23 NYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAA 71
+YNV +GA DG +D + ++A A +A T+Y+P G Y + AA
Sbjct: 2 DYNVKDFGALGDGVSDD-RASIQAAIDAAYAAGGGTVYLPAGEYRVSAA 49
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 22 ANYNVIT-YGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNR 80
NY+++ +GA + +D + +A + R T+ +P G Y + + R
Sbjct: 21 VNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIR 80
Query: 81 VTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKN 136
V + I+ PT W + + + ++ + V +F G G GF K ++
Sbjct: 81 VESDV---IIKPT--WNGDGKNHRLFEVGVNNI-VRNFSFQGLGNGFLVDFKDSRD 130
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 22 ANYNVIT-YGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNR 80
NY+++ +GA + +D + +A + R T+ +P G Y + + R
Sbjct: 20 VNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHIR 79
Query: 81 VTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKN 136
V + I+ PT W + + + ++ + V +F G G GF K ++
Sbjct: 80 VESDV---IIKPT--WNGDGKNHRLFEVGVNNI-VRNFSFQGLGNGFLVDFKDSRD 129
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 25 NVITYGAKPDGRTDSTKPFLKAWASACR--------SAKASTIYVPKGRY-------LIK 69
NV YGAK DG TD T A + R + + + +Y P G Y ++
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLY 110
Query: 70 AAEFRGPCRNRVTL 83
+ G +N TL
Sbjct: 111 QTQLIGDAKNLPTL 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,461,694
Number of Sequences: 62578
Number of extensions: 476808
Number of successful extensions: 813
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 24
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)