Query 037377
Match_columns 387
No_of_seqs 231 out of 1622
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 1E-83 2.3E-88 623.3 47.7 382 6-387 10-392 (394)
2 PLN02793 Probable polygalactur 100.0 1.2E-80 2.6E-85 611.1 49.0 366 21-387 50-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 1.7E-79 3.7E-84 600.2 46.8 364 16-386 60-430 (431)
4 PLN02188 polygalacturonase/gly 100.0 3.8E-79 8.3E-84 594.0 44.6 366 20-387 33-404 (404)
5 PLN03010 polygalacturonase 100.0 2.7E-78 6E-83 586.5 47.6 355 19-387 42-403 (409)
6 PLN03003 Probable polygalactur 100.0 4.8E-79 1E-83 594.8 41.8 363 17-387 17-389 (456)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.8E-60 6.1E-65 455.2 33.4 321 51-376 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 2.5E-44 5.5E-49 355.5 27.5 274 18-302 77-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1.6E-24 3.6E-29 208.2 24.1 248 19-294 33-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 1.4E-21 2.9E-26 177.9 19.7 135 23-172 1-143 (225)
11 PLN02218 polygalacturonase ADP 99.9 2.7E-19 5.8E-24 176.0 28.6 197 142-363 148-384 (431)
12 PLN03003 Probable polygalactur 99.9 3.7E-19 8E-24 174.6 27.5 197 142-363 105-333 (456)
13 PLN03010 polygalacturonase 99.9 1.4E-18 3E-23 169.6 30.8 204 142-370 131-358 (409)
14 PF03718 Glyco_hydro_49: Glyco 99.8 8.1E-19 1.8E-23 170.4 27.4 274 56-362 232-554 (582)
15 PLN02155 polygalacturonase 99.8 1.7E-18 3.6E-23 168.6 29.3 197 142-363 107-339 (394)
16 PLN02793 Probable polygalactur 99.8 1.1E-18 2.4E-23 172.4 27.4 197 142-363 135-370 (443)
17 PLN02188 polygalacturonase/gly 99.8 5.6E-18 1.2E-22 165.6 29.4 198 143-363 115-350 (404)
18 PF00295 Glyco_hydro_28: Glyco 99.8 6.8E-18 1.5E-22 162.2 24.7 197 141-363 51-284 (326)
19 TIGR03805 beta_helix_1 paralle 99.7 3.9E-16 8.4E-21 148.8 21.6 196 43-294 1-202 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 4.8E-12 1E-16 126.5 16.4 154 163-334 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.0 1.3E-07 2.8E-12 90.5 24.4 199 70-302 33-250 (314)
22 PF12541 DUF3737: Protein of u 98.9 3.7E-08 8E-13 88.7 13.3 124 146-298 94-228 (277)
23 PF13229 Beta_helix: Right han 98.7 2.9E-07 6.3E-12 78.3 12.3 140 143-302 2-145 (158)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.7 4.5E-07 9.8E-12 88.4 14.6 146 142-301 107-290 (455)
25 PF12541 DUF3737: Protein of u 98.6 2.6E-06 5.6E-11 77.0 16.5 93 146-264 75-167 (277)
26 COG3420 NosD Nitrous oxidase a 98.6 1.2E-05 2.5E-10 75.1 21.1 151 102-272 69-222 (408)
27 COG3866 PelB Pectate lyase [Ca 98.6 1.1E-05 2.4E-10 74.2 20.4 138 81-265 77-229 (345)
28 PF03718 Glyco_hydro_49: Glyco 98.6 2.2E-06 4.7E-11 84.7 15.5 173 166-360 322-513 (582)
29 PF13229 Beta_helix: Right han 98.4 4E-06 8.6E-11 71.2 12.6 137 107-272 5-145 (158)
30 PF05048 NosD: Periplasmic cop 98.4 1.3E-05 2.7E-10 73.7 16.0 113 143-271 37-151 (236)
31 PF07602 DUF1565: Protein of u 98.4 3.8E-05 8.2E-10 70.2 18.0 42 39-87 14-60 (246)
32 PF05048 NosD: Periplasmic cop 98.4 1.2E-05 2.7E-10 73.8 15.0 136 142-301 14-151 (236)
33 smart00656 Amb_all Amb_all dom 98.3 3.2E-05 6.8E-10 68.6 16.4 96 169-265 36-144 (190)
34 PLN02480 Probable pectinestera 98.3 0.00018 3.9E-09 69.1 22.2 199 37-295 57-277 (343)
35 PF14592 Chondroitinas_B: Chon 98.3 0.00018 4E-09 70.3 21.8 32 39-73 3-34 (425)
36 PLN02497 probable pectinestera 98.3 0.00039 8.5E-09 66.4 23.5 200 38-295 42-264 (331)
37 PLN02634 probable pectinestera 98.2 0.0011 2.4E-08 63.9 24.8 210 38-295 66-291 (359)
38 PLN02176 putative pectinestera 98.2 0.0014 3E-08 62.9 24.1 199 39-295 50-271 (340)
39 PLN02773 pectinesterase 98.2 0.00035 7.5E-09 66.5 19.9 210 39-294 16-239 (317)
40 PF00544 Pec_lyase_C: Pectate 98.1 3.8E-05 8.3E-10 68.7 11.6 94 171-265 44-158 (200)
41 PRK10123 wcaM putative colanic 98.1 0.00017 3.6E-09 66.1 15.1 58 19-91 30-90 (464)
42 PRK10531 acyl-CoA thioesterase 98.1 0.00097 2.1E-08 65.4 21.3 140 144-295 200-376 (422)
43 PLN02682 pectinesterase family 97.9 0.0041 8.8E-08 60.3 22.9 210 38-295 80-305 (369)
44 PLN02665 pectinesterase family 97.9 0.0047 1E-07 59.9 22.9 204 39-295 79-298 (366)
45 smart00656 Amb_all Amb_all dom 97.9 0.00068 1.5E-08 60.1 15.8 119 143-271 33-173 (190)
46 PF12708 Pectate_lyase_3: Pect 97.9 0.00099 2.1E-08 60.1 17.4 122 153-299 95-224 (225)
47 PLN02304 probable pectinestera 97.9 0.0043 9.2E-08 60.2 21.5 204 38-295 85-312 (379)
48 PLN02708 Probable pectinestera 97.9 0.0028 6.2E-08 64.9 21.2 151 38-233 251-409 (553)
49 PLN02170 probable pectinestera 97.8 0.0034 7.3E-08 63.5 20.7 206 38-295 235-452 (529)
50 PLN02671 pectinesterase 97.8 0.011 2.4E-07 57.2 22.3 213 38-295 69-295 (359)
51 PLN02197 pectinesterase 97.7 0.0096 2.1E-07 61.3 22.3 215 38-295 285-514 (588)
52 PLN02201 probable pectinestera 97.7 0.01 2.2E-07 60.3 22.1 206 38-295 216-442 (520)
53 PLN02432 putative pectinestera 97.7 0.021 4.5E-07 53.9 22.5 198 39-294 22-229 (293)
54 PLN02468 putative pectinestera 97.7 0.0071 1.5E-07 62.2 20.5 210 39-295 269-490 (565)
55 PLN02916 pectinesterase family 97.6 0.015 3.3E-07 58.6 22.0 210 39-295 198-426 (502)
56 PLN02745 Putative pectinestera 97.6 0.016 3.4E-07 60.0 22.6 209 39-295 296-521 (596)
57 PF01095 Pectinesterase: Pecti 97.6 0.0022 4.8E-08 60.8 15.3 150 38-233 10-166 (298)
58 PLN03043 Probable pectinestera 97.6 0.0096 2.1E-07 60.9 20.0 209 38-295 233-462 (538)
59 PLN02933 Probable pectinestera 97.6 0.024 5.2E-07 57.7 22.5 210 39-295 229-454 (530)
60 PLN02416 probable pectinestera 97.6 0.011 2.4E-07 60.5 20.3 211 39-295 241-466 (541)
61 COG3866 PelB Pectate lyase [Ca 97.6 0.023 5E-07 52.8 20.1 118 164-299 144-280 (345)
62 PLN02484 probable pectinestera 97.6 0.013 2.9E-07 60.5 20.9 211 39-295 283-509 (587)
63 PLN02301 pectinesterase/pectin 97.6 0.012 2.6E-07 60.1 20.4 209 39-295 247-472 (548)
64 PLN02713 Probable pectinestera 97.5 0.012 2.5E-07 60.6 19.7 209 39-295 261-489 (566)
65 PLN02506 putative pectinestera 97.5 0.011 2.4E-07 60.3 19.2 205 39-295 243-459 (537)
66 PLN02313 Pectinesterase/pectin 97.5 0.018 3.9E-07 59.6 20.6 211 39-295 286-511 (587)
67 PLN02314 pectinesterase 97.5 0.021 4.5E-07 59.2 21.1 209 39-295 289-509 (586)
68 PLN02488 probable pectinestera 97.4 0.034 7.5E-07 55.9 21.5 209 38-294 207-432 (509)
69 PLN02990 Probable pectinestera 97.4 0.029 6.3E-07 57.9 21.2 211 39-295 270-496 (572)
70 PLN02217 probable pectinestera 97.4 0.03 6.5E-07 58.4 21.3 211 39-295 261-486 (670)
71 COG3420 NosD Nitrous oxidase a 97.4 0.0087 1.9E-07 56.3 15.5 96 138-240 147-244 (408)
72 PLN02995 Probable pectinestera 97.4 0.035 7.6E-07 56.8 20.9 213 38-298 233-464 (539)
73 PF00544 Pec_lyase_C: Pectate 97.3 0.007 1.5E-07 54.1 13.5 116 147-272 43-188 (200)
74 PF12218 End_N_terminal: N ter 97.0 0.00074 1.6E-08 46.9 2.8 38 31-72 1-39 (67)
75 PF01696 Adeno_E1B_55K: Adenov 97.0 0.21 4.7E-06 48.5 20.6 155 25-238 45-204 (386)
76 PF03211 Pectate_lyase: Pectat 96.4 0.37 8E-06 43.2 16.8 77 150-232 61-138 (215)
77 COG4677 PemB Pectin methyleste 96.4 0.053 1.1E-06 50.9 11.6 135 148-293 187-349 (405)
78 PRK10123 wcaM putative colanic 96.1 0.34 7.5E-06 44.9 15.3 120 150-292 151-282 (464)
79 PF03211 Pectate_lyase: Pectat 95.9 0.38 8.2E-06 43.1 14.1 129 173-328 61-194 (215)
80 TIGR03804 para_beta_helix para 93.7 0.11 2.4E-06 34.0 3.8 39 193-232 1-39 (44)
81 PF01696 Adeno_E1B_55K: Adenov 91.3 15 0.00034 35.9 19.7 86 169-269 117-204 (386)
82 PLN02480 Probable pectinestera 91.3 4.5 9.8E-05 39.2 12.8 111 171-295 130-252 (343)
83 PF07602 DUF1565: Protein of u 90.8 10 0.00022 35.0 14.0 103 167-302 91-195 (246)
84 PLN02665 pectinesterase family 90.4 5.7 0.00012 38.8 12.6 114 170-296 151-273 (366)
85 TIGR03804 para_beta_helix para 90.1 0.58 1.3E-05 30.5 4.0 40 167-211 2-41 (44)
86 PLN02916 pectinesterase family 89.6 6.4 0.00014 40.1 12.7 114 171-296 275-393 (502)
87 PLN02682 pectinesterase family 88.9 7.8 0.00017 37.9 12.3 112 171-295 161-280 (369)
88 PLN02432 putative pectinestera 88.6 9.5 0.00021 36.1 12.3 110 171-294 92-204 (293)
89 PLN02698 Probable pectinestera 88.4 7.2 0.00016 39.8 12.2 138 148-295 268-419 (497)
90 PLN02468 putative pectinestera 88.4 6.2 0.00014 40.9 11.9 114 171-296 343-461 (565)
91 PLN02217 probable pectinestera 88.3 5.6 0.00012 42.0 11.6 113 171-295 335-452 (670)
92 PLN02488 probable pectinestera 88.0 13 0.00029 37.8 13.6 114 171-296 282-400 (509)
93 PLN02301 pectinesterase/pectin 87.8 7.4 0.00016 40.2 12.0 114 171-296 321-439 (548)
94 PLN02201 probable pectinestera 87.8 13 0.00027 38.3 13.5 114 170-295 290-408 (520)
95 PLN02933 Probable pectinestera 87.8 9.3 0.0002 39.2 12.5 113 171-295 303-420 (530)
96 PLN02995 Probable pectinestera 87.7 6.8 0.00015 40.4 11.6 114 171-296 310-428 (539)
97 PLN02713 Probable pectinestera 87.3 8.4 0.00018 40.0 12.1 113 171-295 338-455 (566)
98 PF09251 PhageP22-tail: Salmon 87.3 32 0.0007 34.0 15.9 67 222-291 263-346 (549)
99 PF09251 PhageP22-tail: Salmon 87.1 15 0.00032 36.2 12.7 45 223-274 311-355 (549)
100 PLN02176 putative pectinestera 86.8 12 0.00027 36.1 12.2 112 171-295 120-246 (340)
101 PLN02313 Pectinesterase/pectin 86.8 9 0.0002 40.0 12.0 114 171-296 360-478 (587)
102 PLN02497 probable pectinestera 86.8 8.1 0.00018 37.2 10.9 114 170-295 112-239 (331)
103 PLN03043 Probable pectinestera 86.6 14 0.00031 38.1 13.2 114 170-295 310-428 (538)
104 PLN02745 Putative pectinestera 86.3 12 0.00027 39.1 12.7 114 171-296 370-488 (596)
105 PLN02314 pectinesterase 86.3 12 0.00026 39.1 12.6 114 171-296 363-481 (586)
106 PLN02990 Probable pectinestera 86.1 12 0.00026 38.9 12.5 114 171-296 345-463 (572)
107 PLN02671 pectinesterase 85.8 13 0.00028 36.2 11.8 111 171-295 152-270 (359)
108 PLN02197 pectinesterase 85.8 13 0.00028 38.8 12.4 115 170-296 361-481 (588)
109 PLN02484 probable pectinestera 85.3 13 0.00027 38.9 12.2 114 171-296 358-476 (587)
110 PLN02304 probable pectinestera 84.8 22 0.00047 35.0 12.8 112 171-294 160-286 (379)
111 PRK10531 acyl-CoA thioesterase 83.5 25 0.00054 35.0 12.8 116 170-296 203-337 (422)
112 PLN02634 probable pectinestera 83.4 20 0.00043 34.9 11.9 111 172-295 148-266 (359)
113 PLN02698 Probable pectinestera 83.0 38 0.00082 34.7 14.3 114 171-296 268-386 (497)
114 PF14592 Chondroitinas_B: Chon 82.4 5.5 0.00012 39.6 7.7 22 281-302 308-329 (425)
115 PLN02773 pectinesterase 79.6 47 0.001 31.9 12.9 113 170-296 99-213 (317)
116 PF01095 Pectinesterase: Pecti 67.6 97 0.0021 29.4 11.8 112 171-295 85-202 (298)
117 PF08480 Disaggr_assoc: Disagg 61.2 1.2E+02 0.0025 26.7 11.1 42 222-267 33-78 (198)
118 PLN02170 probable pectinestera 60.4 1.9E+02 0.004 30.0 12.8 115 170-296 310-428 (529)
119 PF05342 Peptidase_M26_N: M26 59.8 13 0.00028 34.1 4.1 41 22-73 125-166 (250)
120 PLN02708 Probable pectinestera 57.5 1.3E+02 0.0029 31.3 11.5 114 171-296 328-450 (553)
121 smart00722 CASH Domain present 54.4 1.1E+02 0.0024 24.5 10.0 68 147-217 73-144 (146)
122 PF13956 Ibs_toxin: Toxin Ibs, 50.5 9.2 0.0002 19.9 0.9 15 1-15 2-16 (19)
123 smart00710 PbH1 Parallel beta- 49.9 19 0.0004 19.4 2.3 19 254-272 3-22 (26)
124 PF08480 Disaggr_assoc: Disagg 48.6 1.9E+02 0.0041 25.4 12.5 92 200-296 34-144 (198)
125 KOG1777 Putative Zn-finger pro 46.5 3.2E+02 0.007 27.5 13.0 28 55-86 47-74 (625)
126 COG4677 PemB Pectin methyleste 45.7 67 0.0014 30.8 6.4 84 172-265 188-286 (405)
127 PLN02416 probable pectinestera 44.8 2E+02 0.0044 29.8 10.4 113 171-295 315-432 (541)
128 PLN02506 putative pectinestera 44.4 3.2E+02 0.007 28.4 11.7 115 169-295 315-434 (537)
129 COG4588 AcfC Accessory coloniz 41.0 73 0.0016 28.5 5.6 55 1-64 1-55 (252)
130 PF11912 DUF3430: Protein of u 35.1 41 0.0009 29.8 3.4 30 1-30 1-30 (212)
131 PF11777 DUF3316: Protein of u 28.7 68 0.0015 25.6 3.3 19 1-19 1-19 (114)
132 PF07986 TBCC: Tubulin binding 28.2 3.1E+02 0.0068 21.9 7.7 12 144-155 42-53 (120)
133 PHA00672 hypothetical protein 27.7 1E+02 0.0023 25.1 4.0 28 57-89 50-77 (152)
134 PF10731 Anophelin: Thrombin i 26.0 36 0.00078 23.8 1.0 16 1-16 1-16 (65)
135 KOG1777 Putative Zn-finger pro 25.2 1.1E+02 0.0024 30.5 4.5 46 326-371 562-611 (625)
136 PF07172 GRP: Glycine rich pro 25.1 32 0.0007 26.7 0.7 7 1-7 1-7 (95)
137 PRK10081 entericidin B membran 24.7 75 0.0016 21.3 2.3 14 37-50 29-42 (48)
138 PRK13301 putative L-aspartate 23.5 1E+02 0.0023 28.7 3.9 38 21-65 86-123 (267)
139 COG5510 Predicted small secret 22.8 75 0.0016 20.7 1.9 12 38-49 30-41 (44)
140 COG5567 Predicted small peripl 22.2 86 0.0019 21.6 2.2 13 50-64 19-31 (58)
141 PF02402 Lysis_col: Lysis prot 22.1 55 0.0012 21.4 1.2 27 1-29 1-27 (46)
142 PRK09810 entericidin A; Provis 21.8 78 0.0017 20.5 1.9 12 38-49 27-38 (41)
143 PRK15348 type III secretion sy 21.3 88 0.0019 28.9 2.9 42 1-50 1-42 (249)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=1e-83 Score=623.27 Aligned_cols=382 Identities=60% Similarity=1.110 Sum_probs=349.3
Q ss_pred hHHHHHHHhhhccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEE
Q 037377 6 IIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQI 85 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~ 85 (387)
+++.||.++..+..+++++||+||||+|||++|||+|||+||++||++.+|++|+||+|+|++++|.|.|||||+++|+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l 89 (394)
T PLN02155 10 LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKITFQV 89 (394)
T ss_pred HHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCCCceEEE
Confidence 44444445555666789999999999999999999999999976799889999999999999999999999999999999
Q ss_pred eeEEEecCCccccCCCceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccc
Q 037377 86 DGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQT 165 (387)
Q Consensus 86 ~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~ 165 (387)
+|+|+++.|+..|.....|+.+.+.+|+.|+||+|||+|+.||..+..+...+.+|+++.|.+|+|++|++++++|||.|
T Consensus 90 ~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w 169 (394)
T PLN02155 90 AGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS 169 (394)
T ss_pred eeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe
Confidence 99999999998887666799999999999999999999999998765444556688999999999999999999999999
Q ss_pred eeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCC
Q 037377 166 HLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGK 245 (387)
Q Consensus 166 ~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~ 245 (387)
++++.+|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||.|..+||++|||+|+
T Consensus 170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~ 249 (394)
T PLN02155 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAK 249 (394)
T ss_pred EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccc
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEE
Q 037377 246 DFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVT 325 (387)
Q Consensus 246 ~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt 325 (387)
+...+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+|++|+++++||.|++.|++....++...+.+.|+||+
T Consensus 250 ~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It 329 (394)
T PLN02155 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVT 329 (394)
T ss_pred cCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEE
Confidence 76678899999999999999999999998755789999999999999999999999999986544555455678999999
Q ss_pred EEeEEEecCCCceEEEEcCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 037377 326 YRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSCKNIGGTTFGVVMPKSCL 387 (387)
Q Consensus 326 ~~nI~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 387 (387)
|+||+++.....++++.|.+..||+||+|+||+++..+ .++.+.|+|+++...++++|++||
T Consensus 330 ~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 330 YKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred EEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 99999998767789999999999999999999999876 446899999999999999999997
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.2e-80 Score=611.07 Aligned_cols=366 Identities=41% Similarity=0.762 Sum_probs=336.7
Q ss_pred CceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCC-EEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccC
Q 037377 21 AANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKG-RYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALG 99 (387)
Q Consensus 21 ~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G-~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~ 99 (387)
+++++|+||||+|||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.|||||+++|+++|+|+++.++.+|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 47899999999999999999999999997799888999999999 59999999999999999999999999999999897
Q ss_pred C--CceEEEEEeeeEEEEEc-eEEeCCCCceecccC---CCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeecee
Q 037377 100 N--SGYWILFIKIDRLSVIG-GTFDGKGAGFWACRK---SGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCN 173 (387)
Q Consensus 100 ~--~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~---~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~ 173 (387)
. .+.||.+.+.+|++|+| |+|||+|+.||+... ....+..||++|.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 4 35799999999999999 999999999996421 11234568999999999999999999999999999999999
Q ss_pred eEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeE
Q 037377 174 NVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQ 253 (387)
Q Consensus 174 nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ 253 (387)
+++|++++|.++..++|+||||+.+|+||+|+||+|+++||||++|++++||+|+||+|..+||++|||+|++.....++
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~ 289 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEE
Confidence 99999999999887899999999999999999999999999999999999999999999999999999999887778899
Q ss_pred EEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEec
Q 037377 254 NITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTS 333 (387)
Q Consensus 254 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~ 333 (387)
||+|+||++.++.+|++||+|++ ++|.|+||+|+|++|+++.+||.|++.|++...+++..+..+.|+||+|+||+++.
T Consensus 290 nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 290 DITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999975 67899999999999999999999999997655556555677899999999999998
Q ss_pred CCCceEEEEcCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 037377 334 KTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSCKNIGGTTFGVVMPKSCL 387 (387)
Q Consensus 334 ~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 387 (387)
..+.++.+.|+++.||+||+|+||+++..+ +.....|+|+++...+.+.|++|+
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 666789999999999999999999999875 555789999999999999999996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.7e-79 Score=600.25 Aligned_cols=364 Identities=41% Similarity=0.767 Sum_probs=334.1
Q ss_pred hccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCC-EEEEEEEEeeCCCCCcEEEEEeeEEEecCC
Q 037377 16 IKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKG-RYLIKAAEFRGPCRNRVTLQIDGTIVAPTN 94 (387)
Q Consensus 16 ~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G-~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~ 94 (387)
.+..+.++++|+||||+|||++|||+|||+||++||++.++++|+||+| +|+++++.|.||||++++|+++|+|+++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 5556789999999999999999999999999977799888899999999 699999999999999999999999999999
Q ss_pred ccccCCCceEEEEEeeeEEEEEc---eEEeCCCCceecccCC---CCCCCCCceEEEEEeeccEEEEeeEEecCccceeE
Q 037377 95 YWALGNSGYWILFIKIDRLSVIG---GTFDGKGAGFWACRKS---GKNCPAGASSITFNWANNILISGLTSINSQQTHLV 168 (387)
Q Consensus 95 ~~~~~~~~~~i~~~~~~ni~I~G---G~idg~g~~~~~~~~~---~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~ 168 (387)
..+|+....||.+.+.+||+|+| |+|||+|+.||..... ..++..||+++.|.+|+|++|++++++|+|+|+++
T Consensus 140 ~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~ 219 (431)
T PLN02218 140 RSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQIS 219 (431)
T ss_pred hhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEE
Confidence 99998777899999999999999 9999999999974321 12345799999999999999999999999999999
Q ss_pred eeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 169 INSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 169 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
+..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..+||++|||+|.+..
T Consensus 220 ~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~ 299 (431)
T PLN02218 220 IEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNS 299 (431)
T ss_pred EEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCC
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999997766
Q ss_pred CCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEe
Q 037377 249 EDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRN 328 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~n 328 (387)
...++||+|+||++.++.+|+|||+|++ ++|.|+||+|+|++|+++++||.|++.|++.. .++.++..+.|+||+|+|
T Consensus 300 ~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~N 377 (431)
T PLN02218 300 KAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRN 377 (431)
T ss_pred CceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEEe
Confidence 6789999999999999999999999975 78999999999999999999999999998633 355555778999999999
Q ss_pred EEEecCCCceEEEEcCCCCceecEEEEeEEEEecCCccceeeecccccccceecCCCC
Q 037377 329 IKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATSSCKNIGGTTFGVVMPKSC 386 (387)
Q Consensus 329 I~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~~c~~~~~~~~~~~~~~~~ 386 (387)
|+++.....++.+.|.++.||+||+|+||++++. ...|+|+++...++++| .|
T Consensus 378 I~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p-~c 430 (431)
T PLN02218 378 ISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSP-QC 430 (431)
T ss_pred EEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCC-CC
Confidence 9999876678999999999999999999999853 46899999999998776 77
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.8e-79 Score=593.97 Aligned_cols=366 Identities=41% Similarity=0.792 Sum_probs=330.0
Q ss_pred CCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccC
Q 037377 20 NAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALG 99 (387)
Q Consensus 20 ~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~ 99 (387)
+++++||+||||+|||.+|||+|||+||++||++.+|++|+||+|+|+++++.|+||||+...|.+ +|+++.|+.+|.
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCC
Confidence 358899999999999999999999999987799888899999999999999999999865444444 999999999998
Q ss_pred CCceEEEEEeeeEEEEEc-eEEeCCCCceecccCC--CCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEE
Q 037377 100 NSGYWILFIKIDRLSVIG-GTFDGKGAGFWACRKS--GKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVN 176 (387)
Q Consensus 100 ~~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~--~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~ 176 (387)
....|+.+..++|++|+| |+|||+|+.||+.... ...+..||++|.|.+|+|++|++++++|+|+|++++..|++++
T Consensus 111 ~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~ 190 (404)
T PLN02188 111 SGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFK 190 (404)
T ss_pred CccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEE
Confidence 767899998899999999 9999999999974321 2345679999999999999999999999999999999999999
Q ss_pred EEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEE
Q 037377 177 VRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNIT 256 (387)
Q Consensus 177 i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~ 256 (387)
|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+|+.|..+||++|||+|++++.+.++||+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~ 270 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLV 270 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEE
Confidence 99999999888899999999999999999999999999999999999999999999999999999999887778899999
Q ss_pred EEeeEEeCCCceEEEEeecCC-CCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCC
Q 037377 257 LLNAVFTGSDNGVRIKSWARP-SNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKT 335 (387)
Q Consensus 257 i~n~~~~~~~~gi~i~~~~~~-~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~ 335 (387)
|+||++.++.+|++||+|.+. ++|.|+||+|+|++|+++++||.|++.|++.....+..+..+.|+||+|+||+++...
T Consensus 271 v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 271 VRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred EEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 999999999999999999752 4689999999999999999999999999864322222345689999999999999876
Q ss_pred CceEEEEcCCCCceecEEEEeEEEEecC--CccceeeecccccccceecCCCCC
Q 037377 336 PEAVTFDCSPTNPCRGIRLHDIKLTYMN--RAATSSCKNIGGTTFGVVMPKSCL 387 (387)
Q Consensus 336 ~~~~~i~~~~~~~i~~i~~~ni~i~~~~--~~~~~~c~~~~~~~~~~~~~~~~~ 387 (387)
..++.+.|.++.||+||+|+||+++.++ +...+.|+|+++...++++|++|+
T Consensus 351 ~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 351 QVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred ceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 6789999999999999999999999874 345799999999999999999995
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.7e-78 Score=586.50 Aligned_cols=355 Identities=39% Similarity=0.799 Sum_probs=328.2
Q ss_pred CCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCC-CcEEEEcCC-EEEEEEEEeeCCCC-CcEEEEEeeEEEecCCc
Q 037377 19 SNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAK-ASTIYVPKG-RYLIKAAEFRGPCR-NRVTLQIDGTIVAPTNY 95 (387)
Q Consensus 19 ~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~-g~~v~ip~G-~Y~~~~l~l~~~~k-s~v~l~~~G~l~~~~~~ 95 (387)
.+++++||+||||+|||++|||+|||+|+++||+..+ +++|+|||| +|+++++.|++||| ++++|+++|+|+++.++
T Consensus 42 ~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~ 121 (409)
T PLN03010 42 VNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNI 121 (409)
T ss_pred CCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCCh
Confidence 3678999999999999999999999999987786432 379999999 79999999999887 58999999999999999
Q ss_pred cccCC--CceEEEEEeeeEEEEEc-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeece
Q 037377 96 WALGN--SGYWILFIKIDRLSVIG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSC 172 (387)
Q Consensus 96 ~~~~~--~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~ 172 (387)
.+|+. ...|+.+.+.+|++|+| |+|||+|+.||. ++.|.+|+|++|++++++|+|+|++++.+|
T Consensus 122 ~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~ 188 (409)
T PLN03010 122 VAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188 (409)
T ss_pred hhccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEecc
Confidence 99964 35789999999999999 999999999994 589999999999999999999999999999
Q ss_pred eeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCe
Q 037377 173 NNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGV 252 (387)
Q Consensus 173 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i 252 (387)
++++|++++|.++..++|+||||+.+|++|+|+||+|+++||||++|+++.++.|+++.|..+||++|||+|+......+
T Consensus 189 ~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 189 NYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred ccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 99999999999987789999999999999999999999999999999999999999999999999999999887656779
Q ss_pred EEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEe
Q 037377 253 QNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGT 332 (387)
Q Consensus 253 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~ 332 (387)
+||+|+||+|.++.+|++||+|.+ ++|.|+||+|+|++|+++++||.|++.|++....+..++..+.|+||+|+||+++
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 999999999999999999999975 7899999999999999999999999999875555665678899999999999999
Q ss_pred cCCCceEEEEcCCCCceecEEEEeEEEEecC-CccceeeecccccccceecCCCCC
Q 037377 333 SKTPEAVTFDCSPTNPCRGIRLHDIKLTYMN-RAATSSCKNIGGTTFGVVMPKSCL 387 (387)
Q Consensus 333 ~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 387 (387)
.....++.+.|++..||+||+|+||.++.++ +.+...|.|+++...++.+|++||
T Consensus 348 ~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 348 TSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 8777899999999999999999999999875 557899999999999999999997
No 6
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.8e-79 Score=594.79 Aligned_cols=363 Identities=38% Similarity=0.732 Sum_probs=328.9
Q ss_pred ccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCE-EEEEEEEeeCCCCCc-EEEEEeeEEEecCC
Q 037377 17 KSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGR-YLIKAAEFRGPCRNR-VTLQIDGTIVAPTN 94 (387)
Q Consensus 17 ~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~-Y~~~~l~l~~~~ks~-v~l~~~G~l~~~~~ 94 (387)
-+++++++||+||||+|||++|||+|||+|+++||++.+|++|+||+|+ |+++++.|.||||+. ++++++|+|+++..
T Consensus 17 ~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~ 96 (456)
T PLN03003 17 IFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK 96 (456)
T ss_pred eeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence 3455788999999999999999999999999988998889999999995 999999999999874 88888999988654
Q ss_pred ccccCC-CceEEEEEeeeEEEEEc-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeece
Q 037377 95 YWALGN-SGYWILFIKIDRLSVIG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSC 172 (387)
Q Consensus 95 ~~~~~~-~~~~i~~~~~~ni~I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~ 172 (387)
..|.. ...||.+.+.++++|+| |+|||+|+.||... ..||+++.|.+|+|++|+|++++|+|.|++++.+|
T Consensus 97 -~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c 169 (456)
T PLN03003 97 -GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISEC 169 (456)
T ss_pred -ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEecc
Confidence 34643 35799999999999999 99999999999642 46899999999999999999999999999999999
Q ss_pred eeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCe
Q 037377 173 NNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGV 252 (387)
Q Consensus 173 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i 252 (387)
++++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++|||+|++.....+
T Consensus 170 ~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V 249 (456)
T PLN03003 170 NYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV 249 (456)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceE
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999987666789
Q ss_pred EEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCC--CCCCCCCceEEEeEEEEeEE
Q 037377 253 QNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQ--GCPRQSSGVKISQVTYRNIK 330 (387)
Q Consensus 253 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~--~~~~~~~~~~i~nIt~~nI~ 330 (387)
+||+|+||++.++.+|++||+|++ ++|.|+||+|+|++|+++++||.|++.|++... .+...+..+.|+||+|+||+
T Consensus 250 ~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~ 328 (456)
T PLN03003 250 ENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFI 328 (456)
T ss_pred EEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEE
Confidence 999999999999999999999975 678999999999999999999999999975322 12334467899999999999
Q ss_pred EecCCCceEEEEcCCCCceecEEEEeEEEEecC----CccceeeecccccccceecCCCCC
Q 037377 331 GTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMN----RAATSSCKNIGGTTFGVVMPKSCL 387 (387)
Q Consensus 331 ~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~----~~~~~~c~~~~~~~~~~~~~~~~~ 387 (387)
++.....++.+.|++..||+||+|+||.++..+ +.+.+.|.|+++...++++|++|+
T Consensus 329 GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 329 GTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 998777889999999999999999999998762 346899999999999999999996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.8e-60 Score=455.20 Aligned_cols=321 Identities=37% Similarity=0.695 Sum_probs=277.8
Q ss_pred hhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc-eEEeCCCCceec
Q 037377 51 CRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG-GTFDGKGAGFWA 129 (387)
Q Consensus 51 c~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~~~ 129 (387)
|++.++++|++|+|+|+++++.|+++++++++++|+|++.++.....+.. ..||.+.+++|++|+| |+|||+|+.||+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 67777889999999999999988655558999999999998865555554 7899999999999999 999999999997
Q ss_pred ccCC-CCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceE
Q 037377 130 CRKS-GKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVT 208 (387)
Q Consensus 130 ~~~~-~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~ 208 (387)
.... ......||+++.|..|+|++|++++++|+|.|++++..|++++|++++|.++...+|+||||+.+|+||+|+||+
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 5543 235568999999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred EecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEE
Q 037377 209 LKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQ 288 (387)
Q Consensus 209 i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ 288 (387)
++++||||++|++..||+|+||+|.++||++|||++.......++||+|+||++.++.+|++||++++ ++|.|+||+|+
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f~ 238 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITFE 238 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEEE
Confidence 99999999999988899999999999999999999764333469999999999999999999999974 88999999999
Q ss_pred eEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCCCCceecEEEEeEEEEecCCccce
Q 037377 289 NLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLTYMNRAATS 368 (387)
Q Consensus 289 ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~~~~~~~~~ 368 (387)
|++|+++++||.|++.|.+ ..+++.++..+.|+||+|+||+++.....++.+.|.+..||+||+|+||+++. + ....
T Consensus 239 ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g-~~~~ 315 (326)
T PF00295_consen 239 NITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G-KKPA 315 (326)
T ss_dssp EEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-BSES
T ss_pred EEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-CcCe
Confidence 9999999999999999975 23333334567999999999999987667899999999999999999999998 3 6679
Q ss_pred eeeccccc
Q 037377 369 SCKNIGGT 376 (387)
Q Consensus 369 ~c~~~~~~ 376 (387)
.|+|+...
T Consensus 316 ~c~nv~~~ 323 (326)
T PF00295_consen 316 QCKNVPSG 323 (326)
T ss_dssp EEBSCCTT
T ss_pred EEECCCCC
Confidence 99998643
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-44 Score=355.51 Aligned_cols=274 Identities=31% Similarity=0.496 Sum_probs=234.9
Q ss_pred cCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEe-e-EEEecCCc
Q 037377 18 SSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQID-G-TIVAPTNY 95 (387)
Q Consensus 18 ~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~-G-~l~~~~~~ 95 (387)
.+..+.++|.+|||+|||.+|+++|||+||++ |++.+|++|+||+|+|+.++|.| ||+++|+++ | +|+++.++
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~-ca~a~Gg~V~lPaGtylsg~l~L----KS~~~L~l~egatl~~~~~p 151 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDA-CASAGGGTVLLPAGTYLSGPLFL----KSNVTLHLAEGATLLASSNP 151 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHHh-hhhhcCceEEECCceeEeeeEEE----ecccEEEecCCceeeCCCCh
Confidence 34468899999999999999999999999985 88889999999999999999999 799999995 8 99999988
Q ss_pred cccCC--------Cce----------E-------------EEEEeeeEEE-EEc-eEEeCCC----CceecccCC--CCC
Q 037377 96 WALGN--------SGY----------W-------------ILFIKIDRLS-VIG-GTFDGKG----AGFWACRKS--GKN 136 (387)
Q Consensus 96 ~~~~~--------~~~----------~-------------i~~~~~~ni~-I~G-G~idg~g----~~~~~~~~~--~~~ 136 (387)
.+|.. ..+ + +.....+|.. |.| ++++|++ ..||..... .+.
T Consensus 152 ~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i 231 (542)
T COG5434 152 KDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRI 231 (542)
T ss_pred hhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcc
Confidence 88873 111 1 2222245555 888 8999864 226644331 111
Q ss_pred CC--CCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCc
Q 037377 137 CP--AGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDD 214 (387)
Q Consensus 137 ~~--~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD 214 (387)
.. .||.++.+..|+||+++|++|.+++.|++|+..|++++++|++|.+.... |+||+++.+|+||+|++|+|.++||
T Consensus 232 ~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD 310 (542)
T COG5434 232 GGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDD 310 (542)
T ss_pred cccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCc
Confidence 12 69999999999999999999999999999999999999999999998644 9999999999999999999999999
Q ss_pred eEEeCCC-----------ceeEEEEeeEEeCCce-eEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceE
Q 037377 215 CISIGPG-----------TRNLFMNNIKCGPGHG-VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFV 282 (387)
Q Consensus 215 ~i~~~~~-----------s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v 282 (387)
||++|++ ++|++|+||.+..+|| +.+||| ..++++||++|||.|.++..|+|||+..+ .+|.+
T Consensus 311 ~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v 385 (542)
T COG5434 311 CIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGV 385 (542)
T ss_pred eEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeE
Confidence 9999986 5899999999999997 889998 68899999999999999999999999865 77999
Q ss_pred EeEEEEeEEEecCCccEEEE
Q 037377 283 RNVLFQNLIMNNVQNPIIVD 302 (387)
Q Consensus 283 ~nI~~~ni~i~~~~~~i~I~ 302 (387)
+||+|+++++.++..+..|.
T Consensus 386 ~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 386 RNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEEecccccCcccceeee
Confidence 99999999999986554444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.93 E-value=1.6e-24 Score=208.21 Aligned_cols=248 Identities=15% Similarity=0.226 Sum_probs=177.2
Q ss_pred CCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEe-eEEEecCCccc
Q 037377 19 SNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKAAEFRGPCRNRVTLQID-GTIVAPTNYWA 97 (387)
Q Consensus 19 ~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~-G~l~~~~~~~~ 97 (387)
++.+.+++++|||++||++|+|+|||+||++ |+. ++++|.+|||+|+.+++.| +++++|+++ |.....
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa~-gG~tV~Lp~G~Y~~G~L~L----~spltL~G~~gAt~~v----- 101 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDE-AAR-AQTPLALPPGVYRTGPLRL----PSGAQLIGVRGATRLV----- 101 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHH-hhc-CCCEEEECCCceecccEEE----CCCcEEEecCCcEEEE-----
Confidence 4567799999999999999999999999996 453 4678999999999999999 588999998 432110
Q ss_pred cCCCceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeecee----
Q 037377 98 LGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCN---- 173 (387)
Q Consensus 98 ~~~~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~---- 173 (387)
+.....++....+++|+|+|-+|+|+|..| ..++.+|.+..|++++|++++|.++..|+|.++.|+
T Consensus 102 IdG~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~ 171 (455)
T TIGR03808 102 FTGGPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDIS 171 (455)
T ss_pred EcCCceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEe
Confidence 111245665666999999999999999644 357789999999999999999999988999999999
Q ss_pred ------------------eEEEEeEEEECCCC--------------------------------CCCCCceeeeccccEE
Q 037377 174 ------------------NVNVRNVKVVAPDQ--------------------------------SPNTDGIHVQASTGVT 203 (387)
Q Consensus 174 ------------------nv~i~~~~i~~~~~--------------------------------~~n~DGi~~~~s~nv~ 203 (387)
++.|++.+|....+ ...++||+++.+.+++
T Consensus 172 ~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~ 251 (455)
T TIGR03808 172 GNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVI 251 (455)
T ss_pred cceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeE
Confidence 66676666654322 2345677777777777
Q ss_pred EEceEEecCC-ceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeec-CCCCce
Q 037377 204 ITGVTLKTGD-DCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWA-RPSNSF 281 (387)
Q Consensus 204 I~n~~i~~gd-D~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~-~~~~g~ 281 (387)
|+++.|+..+ |+|-+.+ ++|+.|+++.|..-.=+.+-++ ...+.=.|+|+.+.+...|+++-... +++-..
T Consensus 252 V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~ 324 (455)
T TIGR03808 252 VRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAV 324 (455)
T ss_pred EECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEE
Confidence 7777777777 7777776 6677777777753211122111 01122346677777777777776542 112235
Q ss_pred EEeEEEEeEEEec
Q 037377 282 VRNVLFQNLIMNN 294 (387)
Q Consensus 282 v~nI~~~ni~i~~ 294 (387)
++.=.++|++-+.
T Consensus 325 ~~gn~irn~~~~~ 337 (455)
T TIGR03808 325 VQGNIIRNLIPKR 337 (455)
T ss_pred EecceeeccccCC
Confidence 5555566666543
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=1.4e-21 Score=177.93 Aligned_cols=135 Identities=27% Similarity=0.298 Sum_probs=77.4
Q ss_pred eEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEE-EEeeCCCCCcEEEEEee----EEEecCCccc
Q 037377 23 NYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKA-AEFRGPCRNRVTLQIDG----TIVAPTNYWA 97 (387)
Q Consensus 23 ~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~-l~l~~~~ks~v~l~~~G----~l~~~~~~~~ 97 (387)
.+||+||||+|||++|||+|||+||+++ +..++++||||||+|+++. +.+ +++++|+++| .+........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLII----PSNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEc----CCCeEEEccCCCeeEEEecCcccc
Confidence 3799999999999999999999999653 6678999999999999987 888 4899999986 3333222222
Q ss_pred cCCCceEEEEEe-eeE--EEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeece
Q 037377 98 LGNSGYWILFIK-IDR--LSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSC 172 (387)
Q Consensus 98 ~~~~~~~i~~~~-~~n--i~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~ 172 (387)
+........+.. ..+ +.|.+-+|++..... ......+.+..+++++|+++++.+....++.+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~ 143 (225)
T PF12708_consen 76 FSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP----------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTG 143 (225)
T ss_dssp SCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECC
T ss_pred cccccceeeeecCCCCceEEEEeeEEEcccccC----------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEEcc
Confidence 211111111111 011 123333344333211 00124566666666777777766665555555533
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.86 E-value=2.7e-19 Score=176.04 Aligned_cols=197 Identities=21% Similarity=0.282 Sum_probs=158.0
Q ss_pred eEEEEEeeccEEEEe---eEEecC-------------------ccceeEeeceeeEEEEeEEEECCCCCCCCCceeeecc
Q 037377 142 SSITFNWANNILISG---LTSINS-------------------QQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQAS 199 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~---v~i~n~-------------------~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s 199 (387)
..+.+.+.+|++|+| =+|.-. ....+.+..|+|++|+++++.+++. --+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 358888999999988 233211 0124778899999999999988764 34889999
Q ss_pred ccEEEEceEEec-----CCceEEeCCCceeEEEEeeEEeCCce-eEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEe
Q 037377 200 TGVTITGVTLKT-----GDDCISIGPGTRNLFMNNIKCGPGHG-VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKS 273 (387)
Q Consensus 200 ~nv~I~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~ 273 (387)
+||+|+|.+|.+ +.|+|.+.+ ++||+|+||++.++++ |+|++. .+||+|+||++... +|+.|.+
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIksg--------s~nI~I~n~~c~~G-HGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIESG--------SQNVQINDITCGPG-HGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecCC--------CceEEEEeEEEECC-CCEEECc
Confidence 999999999987 569999988 8999999999998875 999762 48999999999764 8999988
Q ss_pred ecC-CCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCC-------
Q 037377 274 WAR-PSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSP------- 345 (387)
Q Consensus 274 ~~~-~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~------- 345 (387)
... ...+.|+||+++|+++.+..++++|+++.+ ..+.++||+|+||++.... .|+.+....
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~-~pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVK-NPIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEccc-ccEEEEeeccCCCCCC
Confidence 632 124689999999999999999999997432 3568999999999999874 466665321
Q ss_pred ----CCceecEEEEeEEEEecC
Q 037377 346 ----TNPCRGIRLHDIKLTYMN 363 (387)
Q Consensus 346 ----~~~i~~i~~~ni~i~~~~ 363 (387)
...++||+|+||+.+..+
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecC
Confidence 124999999999998764
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.85 E-value=3.7e-19 Score=174.62 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=160.1
Q ss_pred eEEEEEeeccEEEEeeEEecCc---cc--------eeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEe
Q 037377 142 SSITFNWANNILISGLTSINSQ---QT--------HLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLK 210 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~---~~--------~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 210 (387)
..|.|.++++++|.|--..+.. .| .+.+..|+|++|+++++.+++. -.+++..|++|+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4689999999999985444432 12 5789999999999999988764 3488899999999999999
Q ss_pred c-----CCceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCC-CCceEE
Q 037377 211 T-----GDDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARP-SNSFVR 283 (387)
Q Consensus 211 ~-----gdD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~ 283 (387)
+ +.|+|.+.+ ++||+|+||.+.+++ .++|++- .+||+|+|+++... +||.|.+.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiksg--------s~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINSG--------TSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCCC--------CccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 7 469999988 899999999999886 4999762 38999999999875 99999987321 235799
Q ss_pred eEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCC--------------CCce
Q 037377 284 NVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSP--------------TNPC 349 (387)
Q Consensus 284 nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~--------------~~~i 349 (387)
||+++|+++.+..++++|+++.+ ..+.++||+|+||++.... .|+.+.... ...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~-~pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVE-NPIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCcc-ceEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999997542 3468999999999999875 477775321 1258
Q ss_pred ecEEEEeEEEEecC
Q 037377 350 RGIRLHDIKLTYMN 363 (387)
Q Consensus 350 ~~i~~~ni~i~~~~ 363 (387)
+||+|+||+.+..+
T Consensus 320 snI~f~NI~GTs~~ 333 (456)
T PLN03003 320 SKVVFSNFIGTSKS 333 (456)
T ss_pred EeEEEEeEEEEeCc
Confidence 99999999987655
No 13
>PLN03010 polygalacturonase
Probab=99.85 E-value=1.4e-18 Score=169.56 Aligned_cols=204 Identities=18% Similarity=0.266 Sum_probs=161.2
Q ss_pred eEEEEEeeccEEEEeeEEecCc---cc-eeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEec-----C
Q 037377 142 SSITFNWANNILISGLTSINSQ---QT-HLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKT-----G 212 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~---~~-~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----g 212 (387)
..+.|.+.+|++|.|--..+.. .| .+.+..|+|++|+++++.+++. --+++..|++|+|++..+.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCC
Confidence 3578999999999986666542 34 5889999999999999998764 24888999999999999986 4
Q ss_pred CceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCC-CCceEEeEEEEeE
Q 037377 213 DDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARP-SNSFVRNVLFQNL 290 (387)
Q Consensus 213 dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~nI~~~ni 290 (387)
.|+|.+.+ ++||+|+||++.+++ .++|++. -.++.|+++++... +|+.|.+.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEee
Confidence 69999987 899999999999886 5999873 25788888888764 89999986321 2246999999999
Q ss_pred EEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcC---C---------CCceecEEEEeEE
Q 037377 291 IMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCS---P---------TNPCRGIRLHDIK 358 (387)
Q Consensus 291 ~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~---~---------~~~i~~i~~~ni~ 358 (387)
++.+..++++|+++.+ ..+.++||+|+||++.... .|+.+... . ..+++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999997543 3468999999999999874 56766531 1 1258999999999
Q ss_pred EEecC-Cccceee
Q 037377 359 LTYMN-RAATSSC 370 (387)
Q Consensus 359 i~~~~-~~~~~~c 370 (387)
.+..+ ....+.|
T Consensus 346 GT~~~~~~i~l~C 358 (409)
T PLN03010 346 GTTSNENAITLKC 358 (409)
T ss_pred EEeCCCccEEEEe
Confidence 98655 3333444
No 14
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.85 E-value=8.1e-19 Score=170.40 Aligned_cols=274 Identities=17% Similarity=0.211 Sum_probs=155.2
Q ss_pred CcEEEEcCCEEEEEE---EEeeCCCCCcE-EEEEe-eEEEecCCccccCCCceEEEEEeeeEEEEEc-eEEeCCCCceec
Q 037377 56 ASTIYVPKGRYLIKA---AEFRGPCRNRV-TLQID-GTIVAPTNYWALGNSGYWILFIKIDRLSVIG-GTFDGKGAGFWA 129 (387)
Q Consensus 56 g~~v~ip~G~Y~~~~---l~l~~~~ks~v-~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G~idg~g~~~~~ 129 (387)
-.+|||+||+|.++. +.| ++|+ ++|++ |.+.. +++......+|++|.| |++.|....|-.
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L----~sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~A 297 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRL----PSNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYEA 297 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TTB
T ss_pred cceEEeCCceEEeCCCccEEE----CCCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEec
Confidence 368999999999976 677 3664 89998 65442 4454445789999999 999997765532
Q ss_pred ccCCCC-------CC-CCCceEEEEE---eeccEEEEeeEEecCccceeEeecee----eEEEEeEEEECCCCCCCCCce
Q 037377 130 CRKSGK-------NC-PAGASSITFN---WANNILISGLTSINSQQTHLVINSCN----NVNVRNVKVVAPDQSPNTDGI 194 (387)
Q Consensus 130 ~~~~~~-------~~-~~~~~~i~~~---~~~nv~i~~v~i~n~~~~~i~~~~~~----nv~i~~~~i~~~~~~~n~DGi 194 (387)
...... .+ ...-+|+.+. .+.++.++|++|.++|+|.+.+.+.+ +..|+|.++...+ ..++|||
T Consensus 298 ~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi 376 (582)
T PF03718_consen 298 DTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGI 376 (582)
T ss_dssp BCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----
T ss_pred cCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCc
Confidence 221110 00 1122455533 45699999999999999999999655 5899999999875 5899999
Q ss_pred eeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCc-e--eEEeecCCCCCCCCeEEEEEEeeEEeCCC-----
Q 037377 195 HVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGH-G--VSIGSLGKDFNEDGVQNITLLNAVFTGSD----- 266 (387)
Q Consensus 195 ~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~-g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~----- 266 (387)
.+. ++-+|+||++++.||+|-+.. .++.|+||++|..+ | +.+|. ....++||.|+|+.+..++
T Consensus 377 ~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW-----~pr~isnv~veni~IIh~r~~~~~ 447 (582)
T PF03718_consen 377 ELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW-----TPRNISNVSVENIDIIHNRWIWHN 447 (582)
T ss_dssp B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C-----S---EEEEEEEEEEEEE---SSGG
T ss_pred ccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec-----cccccCceEEeeeEEEeeeeeccc
Confidence 997 577889999999999997776 59999999999754 3 66664 3566999999999998862
Q ss_pred ----ceEEEEee-c---CCC-----CceEEeEEEEeEEEecCCc-cEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEe
Q 037377 267 ----NGVRIKSW-A---RPS-----NSFVRNVLFQNLIMNNVQN-PIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGT 332 (387)
Q Consensus 267 ----~gi~i~~~-~---~~~-----~g~v~nI~~~ni~i~~~~~-~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~ 332 (387)
.+|.-.+. + ++. .-.||+++|+|+++|+.-. .++|...-. .....|+|+.|+...+.
T Consensus 448 ~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~~~ 518 (582)
T PF03718_consen 448 NYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWNGL 518 (582)
T ss_dssp CTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET-C
T ss_pred CCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccccCc
Confidence 34433321 1 101 1268999999999998643 455552111 01234555555533322
Q ss_pred cCCCceEEEEc------CCCCceecEEEEeEEEEec
Q 037377 333 SKTPEAVTFDC------SPTNPCRGIRLHDIKLTYM 362 (387)
Q Consensus 333 ~~~~~~~~i~~------~~~~~i~~i~~~ni~i~~~ 362 (387)
.-......+.. .......+|.|+|.+|.++
T Consensus 519 ~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 519 DITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp GCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ccccceeeccccccccccccccccceEEEeEEECCE
Confidence 11111122221 1233588999999999665
No 15
>PLN02155 polygalacturonase
Probab=99.85 E-value=1.7e-18 Score=168.59 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=157.7
Q ss_pred eEEEEEeeccEEEEeeEEecCcc-----------------ceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEE
Q 037377 142 SSITFNWANNILISGLTSINSQQ-----------------THLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTI 204 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~~-----------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I 204 (387)
..+.|.+.+++.|.|=+| +... ..+.+..|++++|+++++.+++. --+++..|+||+|
T Consensus 107 ~wi~~~~~~~i~i~GG~i-DGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~----w~i~~~~~~nv~i 181 (394)
T PLN02155 107 YWILFNKVNRFSLVGGTF-DARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV----SHMTLNGCTNVVV 181 (394)
T ss_pred eeEEEECcCCCEEEccEE-ecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC----eEEEEECeeeEEE
Confidence 357888889999988444 2111 23788999999999999988763 2488899999999
Q ss_pred EceEEec-----CCceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCC-
Q 037377 205 TGVTLKT-----GDDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARP- 277 (387)
Q Consensus 205 ~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~- 277 (387)
+++.|.+ +.|+|.+.+ ++||+|+||++.+++ .++|++- .+||+|+|+++... +|+.|.+....
T Consensus 182 ~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~g--------s~nI~I~n~~c~~G-hGisIGS~g~~~ 251 (394)
T PLN02155 182 RNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGPG--------TRNFLITKLACGPG-HGVSIGSLAKEL 251 (394)
T ss_pred EEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCCC--------CceEEEEEEEEECC-ceEEeccccccC
Confidence 9999987 348999987 899999999999886 5999662 48999999999875 89999986322
Q ss_pred CCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEc-C-C----------
Q 037377 278 SNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDC-S-P---------- 345 (387)
Q Consensus 278 ~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~-~-~---------- 345 (387)
..+.|+||+++|+++.+..++++|+++.. ..++.++||+|+||++.... .|+.+.. + +
T Consensus 252 ~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~-~pI~i~q~Y~~~~~~~~~~~s 321 (394)
T PLN02155 252 NEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVE-NPIIIDQNYCPTHEGCPNEYS 321 (394)
T ss_pred CCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCcc-ccEEEEecccCCCCCCcCCCC
Confidence 36789999999999999999999997432 13578999999999999874 4666642 1 1
Q ss_pred CCceecEEEEeEEEEecC
Q 037377 346 TNPCRGIRLHDIKLTYMN 363 (387)
Q Consensus 346 ~~~i~~i~~~ni~i~~~~ 363 (387)
...++||+|+||+.+..+
T Consensus 322 ~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 322 GVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CeEEEEEEEEeeEEEecC
Confidence 125899999999998764
No 16
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=1.1e-18 Score=172.42 Aligned_cols=197 Identities=21% Similarity=0.296 Sum_probs=158.2
Q ss_pred eEEEEEeeccEEEEeeEEecCcc--------------------ceeEeeceeeEEEEeEEEECCCCCCCCCceeeecccc
Q 037377 142 SSITFNWANNILISGLTSINSQQ--------------------THLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTG 201 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~~--------------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~n 201 (387)
..+.+...+|++|.|--..+... ..+.+..|++++|+++++.+++. --+++..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~----~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ----MHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC----eEEEEEccCc
Confidence 46888899999998754433211 24788899999999999998763 2488899999
Q ss_pred EEEEceEEec-----CCceEEeCCCceeEEEEeeEEeCCce-eEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeec
Q 037377 202 VTITGVTLKT-----GDDCISIGPGTRNLFMNNIKCGPGHG-VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWA 275 (387)
Q Consensus 202 v~I~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~ 275 (387)
|+|++..|.+ ..|+|.+.+ ++||+|+||++.++++ ++|++. .+||+|+|+++... +|+.|.+..
T Consensus 211 v~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIaik~~--------s~nI~I~n~~c~~G-hGisIGSlg 280 (443)
T PLN02793 211 VTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCISIVGN--------SSRIKIRNIACGPG-HGISIGSLG 280 (443)
T ss_pred EEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEEecCC--------cCCEEEEEeEEeCC-ccEEEeccc
Confidence 9999999986 469999988 8999999999998864 999652 38999999999776 899999863
Q ss_pred C-CCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCC---C-----
Q 037377 276 R-PSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSP---T----- 346 (387)
Q Consensus 276 ~-~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~---~----- 346 (387)
. ...+.|+||+|+|+++.+..++++|+++.. ..+.++||+|+||++.... .|+.+.... .
T Consensus 281 ~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~-~pI~I~q~Y~~~~~~~~~ 349 (443)
T PLN02793 281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVS-NPIIIDQYYCDSRKPCAN 349 (443)
T ss_pred CcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCC-ceEEEEeeecCCCCCCCC
Confidence 2 134679999999999999999999997542 3468999999999999875 466675421 1
Q ss_pred ----CceecEEEEeEEEEecC
Q 037377 347 ----NPCRGIRLHDIKLTYMN 363 (387)
Q Consensus 347 ----~~i~~i~~~ni~i~~~~ 363 (387)
..++||+|+||+.+...
T Consensus 350 ~ts~v~I~nI~~~nI~Gt~~~ 370 (443)
T PLN02793 350 QTSAVKVENISFVHIKGTSAT 370 (443)
T ss_pred CCCCeEEEeEEEEEEEEEEcc
Confidence 24899999999988753
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.83 E-value=5.6e-18 Score=165.62 Aligned_cols=198 Identities=19% Similarity=0.295 Sum_probs=156.8
Q ss_pred EEEEEeeccEEEEeeEEecCc---c----------------ceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEE
Q 037377 143 SITFNWANNILISGLTSINSQ---Q----------------THLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVT 203 (387)
Q Consensus 143 ~i~~~~~~nv~i~~v~i~n~~---~----------------~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~ 203 (387)
.+.|..++|++|.|--..|.. . ..+.+..|+++.|+++++.+++. -.+++..|++|+
T Consensus 115 ~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~----w~i~~~~~~~v~ 190 (404)
T PLN02188 115 WIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF----FHIALVECRNFK 190 (404)
T ss_pred eEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC----eEEEEEccccEE
Confidence 466777889999874444321 1 23678899999999999998764 358899999999
Q ss_pred EEceEEec-----CCceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecC-
Q 037377 204 ITGVTLKT-----GDDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWAR- 276 (387)
Q Consensus 204 I~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~- 276 (387)
|++..|.+ ..|+|.+.+ ++||+|+||++.+++ .++|++. .+||+|+|+.+... +|+.|.+...
T Consensus 191 i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIaiksg--------~~nI~I~n~~c~~g-hGisiGSlG~~ 260 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCISIGQG--------NSQVTITRIRCGPG-HGISVGSLGRY 260 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEEEccC--------CccEEEEEEEEcCC-CcEEeCCCCCC
Confidence 99999987 469999988 899999999999886 5999763 26999999999765 9999987421
Q ss_pred CCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEc-C-----------
Q 037377 277 PSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDC-S----------- 344 (387)
Q Consensus 277 ~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~-~----------- 344 (387)
+..+.|+||+|+|+++.+..++++|+++... ...+.++||+|+||++.... .|+.+.. +
T Consensus 261 ~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~G~v~nI~f~ni~m~~v~-~pI~i~~~Y~~~~~~~~~~~ 331 (404)
T PLN02188 261 PNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGKSAATNMTFENIVMNNVT-NPIIIDQKYCPFYSCESKYP 331 (404)
T ss_pred CcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCceEEEEEEEEeEEecCcc-ceEEEEccccCCCCCCcCCC
Confidence 2346799999999999999999999975321 13468999999999999874 4666652 1
Q ss_pred CCCceecEEEEeEEEEecC
Q 037377 345 PTNPCRGIRLHDIKLTYMN 363 (387)
Q Consensus 345 ~~~~i~~i~~~ni~i~~~~ 363 (387)
....++||+|+||+.+..+
T Consensus 332 s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 332 SGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CCcEEEeEEEEEEEEEecC
Confidence 1235899999999998764
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.81 E-value=6.8e-18 Score=162.21 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=155.9
Q ss_pred ceEEEEEeeccEEEEeeEEecCc------------------cceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccE
Q 037377 141 ASSITFNWANNILISGLTSINSQ------------------QTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGV 202 (387)
Q Consensus 141 ~~~i~~~~~~nv~i~~v~i~n~~------------------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv 202 (387)
..+|.+.+++|+.|.|--..+.. ...+.+..|++++|+++++.+++. -.+++..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~----w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF----WHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS----ESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe----eEEEEEccCCe
Confidence 36788999999999872222211 124888999999999999998764 24888999999
Q ss_pred EEEceEEec-----CCceEEeCCCceeEEEEeeEEeCCce-eEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecC
Q 037377 203 TITGVTLKT-----GDDCISIGPGTRNLFMNNIKCGPGHG-VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWAR 276 (387)
Q Consensus 203 ~I~n~~i~~-----gdD~i~~~~~s~ni~i~n~~~~~~~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~ 276 (387)
+|++..|++ ..|+|.+.+ ++||+|+||.+.++++ +++++.. .||+++||++.+. +|+.|.+...
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iaiks~~--------~ni~v~n~~~~~g-hGisiGS~~~ 196 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAIKSGS--------GNILVENCTCSGG-HGISIGSEGS 196 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEESSEE--------CEEEEESEEEESS-SEEEEEEESS
T ss_pred EEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCcccccccc--------cceEEEeEEEecc-ccceeeeccC
Confidence 999999986 358999987 9999999999998875 9997741 3999999999875 8999998732
Q ss_pred CCC--ceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcC---------C
Q 037377 277 PSN--SFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCS---------P 345 (387)
Q Consensus 277 ~~~--g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~---------~ 345 (387)
.+ ..|+||+|+|+++.+..++++|++... ..+.++||+|+||++.... .|+.+... +
T Consensus 197 -~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~----------~~G~v~nI~f~ni~~~~v~-~pi~i~~~y~~~~~~~~~ 264 (326)
T PF00295_consen 197 -GGSQNDIRNVTFENCTIINTDNGIRIKTWPG----------GGGYVSNITFENITMENVK-YPIFIDQDYRDGGPCGKP 264 (326)
T ss_dssp -SSE--EEEEEEEEEEEEESESEEEEEEEETT----------TSEEEEEEEEEEEEEEEES-EEEEEEEEECTTEESSCS
T ss_pred -CccccEEEeEEEEEEEeeccceEEEEEEecc----------cceEEeceEEEEEEecCCc-eEEEEEeccccccccCcc
Confidence 21 369999999999999999999997432 4579999999999999875 67766521 1
Q ss_pred --CCceecEEEEeEEEEecC
Q 037377 346 --TNPCRGIRLHDIKLTYMN 363 (387)
Q Consensus 346 --~~~i~~i~~~ni~i~~~~ 363 (387)
...++||+|+||+.+..+
T Consensus 265 ~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 265 PSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp SSSSEEEEEEEEEEEEEEST
T ss_pred cCCceEEEEEEEeeEEEecc
Confidence 236999999999999875
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=3.9e-16 Score=148.85 Aligned_cols=196 Identities=20% Similarity=0.280 Sum_probs=125.3
Q ss_pred HHHHHHHHhhcCCCcEEEEcCCEEEE-EEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEceEEe
Q 037377 43 FLKAWASACRSAKASTIYVPKGRYLI-KAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFD 121 (387)
Q Consensus 43 iq~Ai~~ac~~~~g~~v~ip~G~Y~~-~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~id 121 (387)
||+|+++| ..|.+|++|+|+|.+ +++.+. |++++|..+|. ..+ +||
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~---~~~Iti~G~g~------------~~t---------------vid 47 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLD---ADGVTIRGAGM------------DET---------------ILD 47 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEe---CCCeEEEecCC------------Ccc---------------EEe
Confidence 69999875 568999999999986 557764 35666655541 001 133
Q ss_pred CCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCC---CCCCCceeeec
Q 037377 122 GKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQ---SPNTDGIHVQA 198 (387)
Q Consensus 122 g~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DGi~~~~ 198 (387)
+.++. .....+ ...+++++|+++++.++..++|.+..|++++|+++++..... ....+||+++.
T Consensus 48 ~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~ 114 (314)
T TIGR03805 48 FSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE 114 (314)
T ss_pred cccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec
Confidence 32210 001223 235678888888888877778888888888888888763321 12356788888
Q ss_pred cccEEEEceEEecC-CceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecC
Q 037377 199 STGVTITGVTLKTG-DDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWAR 276 (387)
Q Consensus 199 s~nv~I~n~~i~~g-dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~ 276 (387)
|++++|++|.++.. |++|.++. +++++|+||+++..+ |+.+-.. .++.++|+.+.+...|+.+...++
T Consensus 115 s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~S---------~~~~v~~N~~~~N~~Gi~v~~~p~ 184 (314)
T TIGR03805 115 STNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIENS---------QNADVYNNIATNNTGGILVFDLPG 184 (314)
T ss_pred cCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEec---------CCcEEECCEEeccceeEEEeecCC
Confidence 88888888888774 44777765 678888888877543 6666321 556777777777667777754432
Q ss_pred CCCceEEeEEEEeEEEec
Q 037377 277 PSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 277 ~~~g~v~nI~~~ni~i~~ 294 (387)
.....-+++++++.++.+
T Consensus 185 ~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 185 LPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCcCCccceEEECCEEEC
Confidence 112234566666666654
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=4.8e-12 Score=126.46 Aligned_cols=154 Identities=17% Similarity=0.277 Sum_probs=127.4
Q ss_pred ccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCC----ceEEeCCCceeEEEEeeEEeCCce-
Q 037377 163 QQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGD----DCISIGPGTRNLFMNNIKCGPGHG- 237 (387)
Q Consensus 163 ~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd----D~i~~~~~s~ni~i~n~~~~~~~g- 237 (387)
....+.+..|+||.+++++|.+++. -++++..|+|++++|..+.+.+ |++.+.+ |+|+.|++|+|..++.
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 3467889999999999999998764 5799999999999999999854 5888888 9999999999998764
Q ss_pred eEEeecCCCC---CCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCC
Q 037377 238 VSIGSLGKDF---NEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPR 314 (387)
Q Consensus 238 i~igs~g~~~---~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~ 314 (387)
+.+.|..... ....-++|.|+||.|.....++.+.++ .+|.|+||++||+.|.+...+++|++...
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 8887742211 123469999999999987667777776 56889999999999999999999997543
Q ss_pred CCCceEEEeEEEEeEEEecC
Q 037377 315 QSSGVKISQVTYRNIKGTSK 334 (387)
Q Consensus 315 ~~~~~~i~nIt~~nI~~~~~ 334 (387)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 337899999998887765
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.04 E-value=1.3e-07 Score=90.47 Aligned_cols=199 Identities=15% Similarity=0.195 Sum_probs=138.4
Q ss_pred EEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEee
Q 037377 70 AAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWA 149 (387)
Q Consensus 70 ~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~ 149 (387)
++.|.|..+..+.|.+.+... ...-+.. .+++|+|+|-++...+ ..+|.+..|
T Consensus 33 ~Iti~G~g~~~tvid~~~~~~----------~~~~i~v-~a~~VtI~~ltI~~~~----------------~~GI~v~~s 85 (314)
T TIGR03805 33 GVTIRGAGMDETILDFSGQVG----------GAEGLLV-TSDDVTLSDLAVENTK----------------GDGVKVKGS 85 (314)
T ss_pred CeEEEecCCCccEEecccCCC----------CCceEEE-EeCCeEEEeeEEEcCC----------------CCeEEEeCC
Confidence 477765312346666555320 1223333 3789999994443321 136788899
Q ss_pred ccEEEEeeEEec-------CccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCc
Q 037377 150 NNILISGLTSIN-------SQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGT 222 (387)
Q Consensus 150 ~nv~i~~v~i~n-------~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s 222 (387)
++++|+++++.. ...++|.+..|++++|+++.+....+ +||.+..|++++|+++.++....+|.+.. +
T Consensus 86 ~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d----~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S 160 (314)
T TIGR03805 86 DGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD----AGIYVGQSQNIVVRNNVAEENVAGIEIEN-S 160 (314)
T ss_pred CCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc----ccEEECCCCCeEEECCEEccCcceEEEEe-c
Confidence 999999999961 24689999999999999999987542 59999999999999999999989998886 7
Q ss_pred eeEEEEeeEEeCC-ceeEEeecCCCCCCCCeEEEEEEeeEEeCCCc-eEE-----EEeecCCCCceE----EeEEEEeEE
Q 037377 223 RNLFMNNIKCGPG-HGVSIGSLGKDFNEDGVQNITLLNAVFTGSDN-GVR-----IKSWARPSNSFV----RNVLFQNLI 291 (387)
Q Consensus 223 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~-gi~-----i~~~~~~~~g~v----~nI~~~ni~ 291 (387)
.++.|+++++... .|+.+-+.-.. .....++++|+++.+.+... .+. +...+ .+.|.+ +++.|+|.+
T Consensus 161 ~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~-~g~Gi~i~~~~~v~I~~N~ 238 (314)
T TIGR03805 161 QNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVP-AGTGVVVMANRDVEIFGNV 238 (314)
T ss_pred CCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCC-CCcEEEEEcccceEEECCE
Confidence 8999999999864 47777433111 12345899999999987531 111 11111 133443 899999999
Q ss_pred EecCC-ccEEEE
Q 037377 292 MNNVQ-NPIIVD 302 (387)
Q Consensus 292 i~~~~-~~i~I~ 302 (387)
+++.. .++.+.
T Consensus 239 i~~n~~~~i~~~ 250 (314)
T TIGR03805 239 ISNNDTANVLIS 250 (314)
T ss_pred EeCCcceeEEEE
Confidence 98876 467665
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.88 E-value=3.7e-08 Score=88.73 Aligned_cols=124 Identities=19% Similarity=0.281 Sum_probs=84.1
Q ss_pred EEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCC-----CCc------eeeeccccEEEEceEEecCCc
Q 037377 146 FNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPN-----TDG------IHVQASTGVTITGVTLKTGDD 214 (387)
Q Consensus 146 ~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n-----~DG------i~~~~s~nv~I~n~~i~~gdD 214 (387)
|+.|++++++++++-|++-.. -.|++++++|+.+.+....-+ -|+ ..+++|+||.|+|+.+.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~Et~---W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADETL---WNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hhcccCcEEEeeEeCCCcccC---EEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-
Confidence 567888888888887776432 246677777777744321111 122 34467899999999999876
Q ss_pred eEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEec
Q 037377 215 CISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 215 ~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
|+.. ++||+|.|+++.+ =.+|- ..+|+++.||++.+. . +--+++|++.+|++|.+
T Consensus 170 --AFWn-~eNVtVyDS~i~G---EYLgW--------~SkNltliNC~I~g~-Q----------pLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 --AFWN-CENVTVYDSVING---EYLGW--------NSKNLTLINCTIEGT-Q----------PLCYCDNLVLENCTMID 224 (277)
T ss_pred --cccc-CCceEEEcceEee---eEEEE--------EcCCeEEEEeEEecc-C----------ccEeecceEEeCcEeec
Confidence 4555 8999999998842 12221 128999999999886 2 34568889999999987
Q ss_pred CCcc
Q 037377 295 VQNP 298 (387)
Q Consensus 295 ~~~~ 298 (387)
+.-+
T Consensus 225 tdla 228 (277)
T PF12541_consen 225 TDLA 228 (277)
T ss_pred ceee
Confidence 6533
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.69 E-value=2.9e-07 Score=78.27 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=99.8
Q ss_pred EEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCc
Q 037377 143 SITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGT 222 (387)
Q Consensus 143 ~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s 222 (387)
+|.+....+++|++.+|.+...+++.+..+..++|++++|... ..|+.+....++++++|.+.....++.+. .+
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISNG-----GYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEESS-----TTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECC-----CcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 3677778889999999999999999999999999999999982 37899999999999999999877777777 47
Q ss_pred eeEEEEeeEEeCCc--eeEEeecCCCCCCCCeEEEEEEeeEEeCCC-ceEEEEeecCCCCceEEeEEEEeEEEecCC-cc
Q 037377 223 RNLFMNNIKCGPGH--GVSIGSLGKDFNEDGVQNITLLNAVFTGSD-NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ-NP 298 (387)
Q Consensus 223 ~ni~i~n~~~~~~~--gi~igs~g~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~-~~ 298 (387)
..++|++|.+.... |+.+.. ..++++|+++++.+.. .|+.+.... -.+++++++++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 89999999998653 677732 1367999999999976 788876431 236778888887764 66
Q ss_pred EEEE
Q 037377 299 IIVD 302 (387)
Q Consensus 299 i~I~ 302 (387)
|.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 6553
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.68 E-value=4.5e-07 Score=88.40 Aligned_cols=146 Identities=18% Similarity=0.184 Sum_probs=100.9
Q ss_pred eEEEEEeeccEEEEeeEEecCc------cceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEec-CCc
Q 037377 142 SSITFNWANNILISGLTSINSQ------QTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKT-GDD 214 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD 214 (387)
.++.-..+++++|+|++|.++. ...|.+..|++++|++++|..+.. -||++..|+ ..|.++.+.. .+.
T Consensus 107 ~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~----FGI~L~~~~-~~I~~N~I~g~~~~ 181 (455)
T TIGR03808 107 SLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGG----NGIWLETVS-GDISGNTITQIAVT 181 (455)
T ss_pred eEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCc----ceEEEEcCc-ceEecceEeccccc
Confidence 3455667899999999998764 246888999999999999998731 478888887 6666666654 456
Q ss_pred eEEeCCCceeEEEEeeEEeCCc--eeEEeec------------------------CCCCCC---CCeEEEEEEeeEEeCC
Q 037377 215 CISIGPGTRNLFMNNIKCGPGH--GVSIGSL------------------------GKDFNE---DGVQNITLLNAVFTGS 265 (387)
Q Consensus 215 ~i~~~~~s~ni~i~n~~~~~~~--gi~igs~------------------------g~~~~~---~~i~ni~i~n~~~~~~ 265 (387)
.|.++. +++..|+++++.... ||.|-.. +++... -...+++|+++++.++
T Consensus 182 ~I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~ 260 (455)
T TIGR03808 182 AIVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNC 260 (455)
T ss_pred eEEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEecc
Confidence 666665 678888888877542 4444321 111100 0235788888888888
Q ss_pred C-ceEEEEeecCCCCceEEeEEEEeEEEecCCc-cEEE
Q 037377 266 D-NGVRIKSWARPSNSFVRNVLFQNLIMNNVQN-PIIV 301 (387)
Q Consensus 266 ~-~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~-~i~I 301 (387)
+ .|+++.+. +|+.|++.+++++.+ +++.
T Consensus 261 r~dgI~~nss--------s~~~i~~N~~~~~R~~alhy 290 (455)
T TIGR03808 261 DYSAVRGNSA--------SNIQITGNSVSDVREVALYS 290 (455)
T ss_pred ccceEEEEcc--------cCcEEECcEeeeeeeeEEEE
Confidence 7 78888653 467777777777666 6543
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.62 E-value=2.6e-06 Score=77.01 Aligned_cols=93 Identities=17% Similarity=0.362 Sum_probs=60.2
Q ss_pred EEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeE
Q 037377 146 FNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNL 225 (387)
Q Consensus 146 ~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni 225 (387)
+.+++|++|++..+.-+. .+..|++++++|+++.... =-+|.|++|+++|+.+ .| |-+.+. ++||
T Consensus 75 iWYs~~i~m~d~~i~apK----~fR~~~~i~L~nv~~~~A~-------Et~W~c~~i~l~nv~~-~g-dYf~m~--s~ni 139 (277)
T PF12541_consen 75 IWYSNNITMKDSVIQAPK----MFRECSNITLENVDIPDAD-------ETLWNCRGIKLKNVQA-NG-DYFFMN--SENI 139 (277)
T ss_pred eeEeCCEEEEeeeccCch----HhhcccCcEEEeeEeCCCc-------ccCEEeCCeEEEeEEE-ec-eEeeee--ccce
Confidence 456777888777775543 2467888888888884432 2357788888888888 33 444444 4677
Q ss_pred EEEeeEEeCCceeEEeecCCCCCCCCeEEEEEEeeEEeC
Q 037377 226 FMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTG 264 (387)
Q Consensus 226 ~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~n~~~~~ 264 (387)
.++|..+.+ +| ...+++||.|+|+++..
T Consensus 140 ~id~l~~~G----------nY-~Fq~~kNvei~ns~l~s 167 (277)
T PF12541_consen 140 YIDNLVLDG----------NY-SFQYCKNVEIHNSKLDS 167 (277)
T ss_pred EEeceEEeC----------CE-EeeceeeEEEEccEEec
Confidence 777777632 11 13456777777777654
No 26
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.62 E-value=1.2e-05 Score=75.06 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=99.1
Q ss_pred ceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEE
Q 037377 102 GYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVK 181 (387)
Q Consensus 102 ~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~ 181 (387)
+..+.+. ++++.++|-+.-++|...- ....-.+.-..++.-.|+.-.+... .++|.+..+.++.+++.+
T Consensus 69 G~~vtv~-aP~~~v~Gl~vr~sg~~lp---------~m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~ 137 (408)
T COG3420 69 GSYVTVA-APDVIVEGLTVRGSGRSLP---------AMDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNT 137 (408)
T ss_pred ccEEEEe-CCCceeeeEEEecCCCCcc---------cccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeE
Confidence 3455555 7888888866666664211 1111223334455556666655543 478999999999999999
Q ss_pred EECCCC---CCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEEE
Q 037377 182 VVAPDQ---SPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLL 258 (387)
Q Consensus 182 i~~~~~---~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~ 258 (387)
|....+ ...+.||+++.+++.+|....+.-+.|||-... +++-.|+++.+... +.|.+ .....+..++
T Consensus 138 i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~~~---RygvH-----yM~t~~s~i~ 208 (408)
T COG3420 138 IQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFRDL---RYGVH-----YMYTNDSRIS 208 (408)
T ss_pred EeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchhhe---eeeEE-----EEeccCcEee
Confidence 986433 356789999999999999999999999998887 77777888777543 22211 1112344555
Q ss_pred eeEEeCCCceEEEE
Q 037377 259 NAVFTGSDNGVRIK 272 (387)
Q Consensus 259 n~~~~~~~~gi~i~ 272 (387)
++...+...|+.+.
T Consensus 209 dn~s~~N~vG~ALM 222 (408)
T COG3420 209 DNSSRDNRVGYALM 222 (408)
T ss_pred cccccCCcceEEEE
Confidence 55555555555553
No 27
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.1e-05 Score=74.16 Aligned_cols=138 Identities=25% Similarity=0.303 Sum_probs=89.1
Q ss_pred EEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc-e---EEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEe
Q 037377 81 VTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG-G---TFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISG 156 (387)
Q Consensus 81 v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G-G---~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~ 156 (387)
+.|.+.|+|.++. + ....+.+..++|.+|.| | ++.| ..+.++.+.||.|++
T Consensus 77 ~ii~v~Gti~~s~-p-----s~~k~~iki~sNkTivG~g~~a~~~g-------------------~gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-P-----SDKKITIKIGSNKTIVGSGADATLVG-------------------GGLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-C-----CCceEEEeeccccEEEeeccccEEEe-------------------ceEEEEeCCcEEEEe
Confidence 5677788877653 1 11236677788888888 4 4433 235555667777777
Q ss_pred eEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceee-eccccEEEEceEEec---------CCceEEeCCCceeEE
Q 037377 157 LTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHV-QASTGVTITGVTLKT---------GDDCISIGPGTRNLF 226 (387)
Q Consensus 157 v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~-~~s~nv~I~n~~i~~---------gdD~i~~~~~s~ni~ 226 (387)
++|...+.| -++-|+|.+ ..++|++|++|++.. +|..+.++.++..|+
T Consensus 132 ltf~~~~~~----------------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyIT 189 (345)
T COG3866 132 LTFEGFYQG----------------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYIT 189 (345)
T ss_pred eEEEeeccC----------------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEE
Confidence 776654421 112266666 456788888888876 355677888888999
Q ss_pred EEeeEEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 227 MNNIKCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 227 i~n~~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
|++|.|...+ +.-+|+.-.......-.+|++.++.+.+.
T Consensus 190 iS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 190 ISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 9999997654 56777642211223456788888888875
No 28
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.56 E-value=2.2e-06 Score=84.67 Aligned_cols=173 Identities=14% Similarity=0.210 Sum_probs=103.2
Q ss_pred eeEeeceeeEEEEeEEEECCCCCCCCCceeeeccc----cEEEEceEEec----CCceEEeCCCceeEEEEeeEEeCCc-
Q 037377 166 HLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQAST----GVTITGVTLKT----GDDCISIGPGTRNLFMNNIKCGPGH- 236 (387)
Q Consensus 166 ~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~----nv~I~n~~i~~----gdD~i~~~~~s~ni~i~n~~~~~~~- 236 (387)
++....+++..+++++|..++. -.+++.+.. +..|+|...-. +.|++.+.. +=+|+||.+...+
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDD 394 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-
T ss_pred hhccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCc
Confidence 4456678899999999998864 347777544 36888888765 579998886 5578999998654
Q ss_pred eeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCC---------ccEEEEe-ecC
Q 037377 237 GVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQ---------NPIIVDQ-NYC 306 (387)
Q Consensus 237 gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~---------~~i~I~~-~~~ 306 (387)
+|.+- .+++.++|+++....+|--|...+ .+..++||.|+|+.+...+ .+|.-.. +|.
T Consensus 395 ~iKlY----------hS~v~v~~~ViWk~~Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~ 462 (582)
T PF03718_consen 395 AIKLY----------HSNVSVSNTVIWKNENGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYD 462 (582)
T ss_dssp SEE------------STTEEEEEEEEEE-SSS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTT
T ss_pred hhhee----------ecCcceeeeEEEecCCCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEecccccc
Confidence 57662 278999999999987776565433 4667999999999997652 2343332 341
Q ss_pred CCCCCCCCCCCceEEEeEEEEeEEEecCCCceEEEEcCCCCceecEEEEeEEEE
Q 037377 307 PNNQGCPRQSSGVKISQVTYRNIKGTSKTPEAVTFDCSPTNPCRGIRLHDIKLT 360 (387)
Q Consensus 307 ~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~~i~~~~~~~i~~i~~~ni~i~ 360 (387)
.-.. .....+.-+|++++|+|+++.+.....+.|. |-..-+|+.++|+.+.
T Consensus 463 ~~~s-~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 463 DMAS-TKTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp S-SS-S--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred cccC-CCCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 1010 1112234679999999999998765556665 4455667888888887
No 29
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.44 E-value=4e-06 Score=71.21 Aligned_cols=137 Identities=20% Similarity=0.287 Sum_probs=92.2
Q ss_pred EEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCC
Q 037377 107 FIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPD 186 (387)
Q Consensus 107 ~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~ 186 (387)
+.+..+++|.+-+|...+ ...|.+..+..++|++.++.+ ...++.+....+++++++.+....
T Consensus 5 i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~ 67 (158)
T PF13229_consen 5 INNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG 67 (158)
T ss_dssp ETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S
T ss_pred EECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc
Confidence 334556667765554332 256888888889999999988 678899998899999999998753
Q ss_pred CCCCCCceeeeccccEEEEceEEecCCc-eEEeCCCceeEEEEeeEEeCC--ceeEEeecCCCCCCCCeEEEEEEeeEEe
Q 037377 187 QSPNTDGIHVQASTGVTITGVTLKTGDD-CISIGPGTRNLFMNNIKCGPG--HGVSIGSLGKDFNEDGVQNITLLNAVFT 263 (387)
Q Consensus 187 ~~~n~DGi~~~~s~nv~I~n~~i~~gdD-~i~~~~~s~ni~i~n~~~~~~--~gi~igs~g~~~~~~~i~ni~i~n~~~~ 263 (387)
.|+.+..+.+++|++|.+....+ +|.+...+.+++|++|++... .|+.+.... -.+++|++|++.
T Consensus 68 -----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~-------~~~~~i~~n~i~ 135 (158)
T PF13229_consen 68 -----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGS-------SPNVTIENNTIS 135 (158)
T ss_dssp -----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC---------S-EEECEEEE
T ss_pred -----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCC-------CCeEEEEEEEEE
Confidence 68888899999999999988544 888874257899999999864 577775531 247889999998
Q ss_pred CCC-ceEEEE
Q 037377 264 GSD-NGVRIK 272 (387)
Q Consensus 264 ~~~-~gi~i~ 272 (387)
+.. .|+.+.
T Consensus 136 ~~~~~gi~~~ 145 (158)
T PF13229_consen 136 NNGGNGIYLI 145 (158)
T ss_dssp CESSEEEE-T
T ss_pred eCcceeEEEE
Confidence 874 677664
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.41 E-value=1.3e-05 Score=73.70 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=90.2
Q ss_pred EEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCc
Q 037377 143 SITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGT 222 (387)
Q Consensus 143 ~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s 222 (387)
.+.+..+.+++|++.++.+. .+++++..+++++|++..+.... .||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-----~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-----YGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-----CCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 45778888999999988877 78899999999999999988753 78999888877999999988777888876 6
Q ss_pred eeEEEEeeEEeCC-ceeEEeecCCCCCCCCeEEEEEEeeEEeCC-CceEEE
Q 037377 223 RNLFMNNIKCGPG-HGVSIGSLGKDFNEDGVQNITLLNAVFTGS-DNGVRI 271 (387)
Q Consensus 223 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~i~n~~~~~~-~~gi~i 271 (387)
.+.+|+++++... .|+.+... .+.+|+++++.+. ..|+.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 6788888888743 47777442 6777888888887 778873
No 31
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.38 E-value=3.8e-05 Score=70.22 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhhcCCCcEEEEcCCEEEEE-----EEEeeCCCCCcEEEEEee
Q 037377 39 STKPFLKAWASACRSAKASTIYVPKGRYLIK-----AAEFRGPCRNRVTLQIDG 87 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~-----~l~l~~~~ks~v~l~~~G 87 (387)
--+-|++|++.| ..|.+|++-||+|.-. +|.+ |+.++|+.+.
T Consensus 14 P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i----~~gVtl~G~~ 60 (246)
T PF07602_consen 14 PFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIII----KPGVTLIGNE 60 (246)
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEe----cCCeEEeecc
Confidence 345799999865 5688999999999653 4566 4778887653
No 32
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.37 E-value=1.2e-05 Score=73.78 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=111.9
Q ss_pred eEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCC
Q 037377 142 SSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPG 221 (387)
Q Consensus 142 ~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~ 221 (387)
..+.+..+++..|++.++.+. ..++.+..+.+++|++.++... ..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 357888999999999999765 4778899999999999999875 379999999999999999999889999998
Q ss_pred ceeEEEEeeEEeCC-ceeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecC-CccE
Q 037377 222 TRNLFMNNIKCGPG-HGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV-QNPI 299 (387)
Q Consensus 222 s~ni~i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~-~~~i 299 (387)
+.+.+|+++++... .||.+... .+.+|+++++.+...||.+... .+.++++.++.+. ..+|
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~s---------~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYGS---------SNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CCCcEEECCEecCCCceEEEeeC---------CceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccce
Confidence 44559999999864 47777432 5578999999988899998632 5677888888877 7788
Q ss_pred EE
Q 037377 300 IV 301 (387)
Q Consensus 300 ~I 301 (387)
.+
T Consensus 150 ~~ 151 (236)
T PF05048_consen 150 YF 151 (236)
T ss_pred EE
Confidence 73
No 33
>smart00656 Amb_all Amb_all domain.
Probab=98.35 E-value=3.2e-05 Score=68.61 Aligned_cols=96 Identities=26% Similarity=0.372 Sum_probs=69.0
Q ss_pred eeceeeEEEEeEEEECCCC--CCCCCceeeeccccEEEEceEEecC----------CceEEeCCCceeEEEEeeEEeCCc
Q 037377 169 INSCNNVNVRNVKVVAPDQ--SPNTDGIHVQASTGVTITGVTLKTG----------DDCISIGPGTRNLFMNNIKCGPGH 236 (387)
Q Consensus 169 ~~~~~nv~i~~~~i~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~g----------dD~i~~~~~s~ni~i~n~~~~~~~ 236 (387)
+..++||.|+|++|+.... ..+.|+|.+.++++|+|++|.+..+ |..+.++.++.++++++|.|...+
T Consensus 36 i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~ 115 (190)
T smart00656 36 IKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHW 115 (190)
T ss_pred EEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCC
Confidence 3335566666666665432 1356999999999999999999886 555678888999999999997654
Q ss_pred -eeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 237 -GVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 237 -gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
+.-+|+.-.. ......+|++.++.+.+.
T Consensus 116 ~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 116 KVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 6778763211 112245899999999775
No 34
>PLN02480 Probable pectinesterase
Probab=98.33 E-value=0.00018 Score=69.10 Aligned_cols=199 Identities=11% Similarity=0.135 Sum_probs=117.3
Q ss_pred ccCHHHHHHHHHHHhhcCCCc----EEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeE
Q 037377 37 TDSTKPFLKAWASACRSAKAS----TIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDR 112 (387)
Q Consensus 37 tddt~aiq~Ai~~ac~~~~g~----~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 112 (387)
+.|-.-||+||+++ . .+. +|+|.+|+|. ..+.+... |.+++|.++|. +.
T Consensus 57 ~g~f~TIQ~AIdaa-p--~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp~ItL~G~g~----------------------~~ 109 (343)
T PLN02480 57 KGDFTSVQSAIDAV-P--VGNSEWIIVHLRKGVYR-EKVHIPEN-KPFIFMRGNGK----------------------GR 109 (343)
T ss_pred CCCcccHHHHHhhC-c--cCCCceEEEEEcCcEEE-EEEEECCC-CceEEEEecCC----------------------CC
Confidence 35688999999975 3 233 4889999998 55555311 45677766541 01
Q ss_pred EEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCc---------cceeEe-eceeeEEEEeEEE
Q 037377 113 LSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQ---------QTHLVI-NSCNNVNVRNVKV 182 (387)
Q Consensus 113 i~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~---------~~~i~~-~~~~nv~i~~~~i 182 (387)
..|.+ +... . . ..+...+ ....+++++++++|+|.. ...+.+ ..++.+.++||++
T Consensus 110 TvI~~-----~~~~------~-~--~~~saTv-tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f 174 (343)
T PLN02480 110 TSIVW-----SQSS------S-D--NAASATF-TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAF 174 (343)
T ss_pred eEEEc-----cccc------c-C--CCCceEE-EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEE
Confidence 11111 1000 0 0 0011233 335688999999999972 134444 4678899999999
Q ss_pred ECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-------ce-eEEeecCCCCCCCCeEE
Q 037377 183 VAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-------HG-VSIGSLGKDFNEDGVQN 254 (387)
Q Consensus 183 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-------~g-i~igs~g~~~~~~~i~n 254 (387)
...+ |-+.... .+-.++||+|...=|-| .|.-...++||++..- .| +.-.+ . ....-..
T Consensus 175 ~G~Q-----DTLy~~~-gR~yf~~C~IeG~VDFI---FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~--r--~~~~~~G 241 (343)
T PLN02480 175 YSTH-----NTLFDYK-GRHYYHSCYIQGSIDFI---FGRGRSIFHNCEIFVIADRRVKIYGSITAHN--R--ESEDNSG 241 (343)
T ss_pred eccc-----ceeEeCC-CCEEEEeCEEEeeeeEE---ccceeEEEEccEEEEecCCCCCCceEEEcCC--C--CCCCCCE
Confidence 8765 4444332 46788999998765543 3345888999988632 13 22211 1 1123357
Q ss_pred EEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 255 ITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 255 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..|.||++.+.. ...+. ..-+....+.|.+..|.+.
T Consensus 242 fvF~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 242 FVFIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSKT 277 (343)
T ss_pred EEEECCEEcccC-ceeee----cCCCCcceEEEEecccCCe
Confidence 889999998742 23332 1223467788888888653
No 35
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.31 E-value=0.00018 Score=70.32 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEEEEe
Q 037377 39 STKPFLKAWASACRSAKASTIYVPKGRYLIKAAEF 73 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~l~l 73 (387)
+.++||+||++| ..|.+|+++.|+|.-..|.+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEE
Confidence 468999999875 57899999999997333444
No 36
>PLN02497 probable pectinesterase
Probab=98.30 E-value=0.00039 Score=66.37 Aligned_cols=200 Identities=16% Similarity=0.115 Sum_probs=112.9
Q ss_pred cCHHHHHHHHHHHhhcCCC--cEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRSAKA--STIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~~g--~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-|-..||+||+++ ..... -+|+|.+|+|.-. +.+... |.+++|+++|. ....|...+..
T Consensus 42 Gdf~TIq~AIdav-P~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~~itl~G~g~------------~~tiIt~~~~~---- 102 (331)
T PLN02497 42 GNFTTIQSAIDSV-PSNNKHWFCINVKAGLYREK-VKIPYD-KPFIVLVGAGK------------RRTRIEWDDHD---- 102 (331)
T ss_pred CCccCHHHHHhhc-cccCCceEEEEEeCcEEEEE-EEecCC-CCcEEEEecCC------------CCceEEEeccc----
Confidence 3578999999865 33222 3599999999643 334211 57888888762 01112111100
Q ss_pred EceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc-----------ceeEe-eceeeEEEEeEEEE
Q 037377 116 IGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ-----------THLVI-NSCNNVNVRNVKVV 183 (387)
Q Consensus 116 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~-----------~~i~~-~~~~nv~i~~~~i~ 183 (387)
++ ... .-....++++..++++|.|... ..+.+ ...+...+.+|++.
T Consensus 103 --~t------------------~~S--aT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~ 160 (331)
T PLN02497 103 --ST------------------AQS--PTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFA 160 (331)
T ss_pred --cc------------------cCc--eEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEe
Confidence 00 000 1122356788888999988642 23332 25678888999988
Q ss_pred CCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC--------ce-eEEeecCCCCCCCCeEE
Q 037377 184 APDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG--------HG-VSIGSLGKDFNEDGVQN 254 (387)
Q Consensus 184 ~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~--------~g-i~igs~g~~~~~~~i~n 254 (387)
..+ |-+.... .+-..++|+|...=|-| .|.-...++||++..- .| |.--+ . .....-..
T Consensus 161 G~Q-----DTLy~~~-gRqyf~~C~IeG~VDFI---FG~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~--r-~~~~~~~G 228 (331)
T PLN02497 161 GVQ-----DTLWDSD-GRHYFKRCTIQGAVDFI---FGSGQSIYESCVIQVLGGQLEPGLAGFITAQG--R-TNPYDANG 228 (331)
T ss_pred ccc-----cceeeCC-CcEEEEeCEEEecccEE---ccCceEEEEccEEEEecCcCCCCCceEEEecC--C-CCCCCCce
Confidence 765 3443333 45788888888765543 2245778888888531 12 21111 0 01223356
Q ss_pred EEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 255 ITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 255 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..|.||.+.+.. -..+.= .-..-..+.|.+..|.+.
T Consensus 229 fvF~~C~itg~g-~~yLGR----PW~~ysrvvf~~t~m~~~ 264 (331)
T PLN02497 229 FVFKNCLVYGTG-SAYLGR----PWRGYSRVLFYNSNLTDV 264 (331)
T ss_pred EEEEccEEccCC-CEEEeC----CCCCCceEEEEecccCCe
Confidence 788888888742 233320 112346778888887654
No 37
>PLN02634 probable pectinesterase
Probab=98.22 E-value=0.0011 Score=63.87 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=116.2
Q ss_pred cCHHHHHHHHHHHhhcC--CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRSA--KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~--~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-|-..||+||+++ ... .--+|+|.||+|.-. +.+... |.+++|+++|.= ...|...+... -
T Consensus 66 Gdf~TIQaAIda~-P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~~ItL~G~g~~------------~TiIt~~~~a~--~ 128 (359)
T PLN02634 66 GDFRSVQDAVDSV-PKNNTMSVTIKINAGFYREK-VVVPAT-KPYITFQGAGRD------------VTAIEWHDRAS--D 128 (359)
T ss_pred CCccCHHHHHhhC-cccCCccEEEEEeCceEEEE-EEEcCC-CCeEEEEecCCC------------ceEEEeccccc--c
Confidence 3577999999964 432 224689999999743 334211 578888887620 11111111000 0
Q ss_pred EceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc---------ceeEee-ceeeEEEEeEEEECC
Q 037377 116 IGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ---------THLVIN-SCNNVNVRNVKVVAP 185 (387)
Q Consensus 116 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~~~~i~~~ 185 (387)
.| .+|..+ ...+...+ ....+++..++++|.|... ..+.+. ..+...+.+|++...
T Consensus 129 ~~----~~g~~~---------~T~~SaTv-~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~ 194 (359)
T PLN02634 129 RG----ANGQQL---------RTYQTASV-TVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGA 194 (359)
T ss_pred cC----CCCccc---------ccccceEE-EEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecc
Confidence 00 011100 00111222 3346888889999988632 233332 567888999999876
Q ss_pred CCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce-eEEeecCCCCCCCCeEEEEEEeeE
Q 037377 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG-VSIGSLGKDFNEDGVQNITLLNAV 261 (387)
Q Consensus 186 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~i~ni~i~n~~ 261 (387)
+ |-+.... .+-..++|+|...=|-| .|.-...++||++..- .| +.- .+.. ....-....|.||.
T Consensus 195 Q-----DTL~~~~-gR~yf~~CyIeG~VDFI---FG~g~a~Fe~C~I~s~~~~~g~ITA--~~R~-~~~~~~GfvF~~C~ 262 (359)
T PLN02634 195 Q-----DTLCDDA-GRHYFKECYIEGSIDFI---FGNGRSMYKDCELHSIASRFGSIAA--HGRT-CPEEKTGFAFVGCR 262 (359)
T ss_pred c-----ceeeeCC-CCEEEEeeEEcccccEE---cCCceEEEeccEEEEecCCCcEEEe--CCCC-CCCCCcEEEEEcCE
Confidence 5 4444332 46788889998765543 2345778888888642 23 221 1110 12233578899999
Q ss_pred EeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 262 FTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 262 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
+.+.. -+.+. ..-+.-..+.|.+..|.+.
T Consensus 263 vtg~g-~~yLG----RPW~~yarvVf~~t~l~~~ 291 (359)
T PLN02634 263 VTGTG-PLYVG----RAMGQYSRIVYAYTYFDAV 291 (359)
T ss_pred EcCCc-ceEec----CCCCCcceEEEEecccCCE
Confidence 87742 23332 1223456788888887653
No 38
>PLN02176 putative pectinesterase
Probab=98.16 E-value=0.0014 Score=62.88 Aligned_cols=199 Identities=16% Similarity=0.151 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 39 STKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
|-.-||+||+++ .... --+|+|++|+|.-. +.+... |.+++|+++|. ....|...+..
T Consensus 50 df~TIq~AIdav-P~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~~vtl~G~g~------------~~TiIt~~~~~----- 109 (340)
T PLN02176 50 YFKTVQSAIDSI-PLQNQNWIRILIQNGIYREK-VTIPKE-KGYIYMQGKGI------------EKTIIAYGDHQ----- 109 (340)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEECCcEEEEE-EEECCC-CccEEEEEcCC------------CceEEEEeCCc-----
Confidence 578999999965 3322 23688999999733 444322 57899988861 01112211000
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----------ceeEe-eceeeEEEEeEEEECC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----------THLVI-NSCNNVNVRNVKVVAP 185 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----------~~i~~-~~~~nv~i~~~~i~~~ 185 (387)
++ + ....+.. .++++..++++|.|... ..+.+ ...+...+.+|++...
T Consensus 110 -~t-~------------------~saT~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~ 168 (340)
T PLN02176 110 -AT-D------------------TSATFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGF 168 (340)
T ss_pred -cc-c------------------cceEEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecc
Confidence 00 0 0012222 46888889999988632 23333 2567888999999875
Q ss_pred CCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---------ce-eEEeecCCCCCCCCeEEE
Q 037377 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---------HG-VSIGSLGKDFNEDGVQNI 255 (387)
Q Consensus 186 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---------~g-i~igs~g~~~~~~~i~ni 255 (387)
+ |-+.... .+-..++|.|...=|-| . |.-...++||++..- .| |.--+ .. ....-...
T Consensus 169 Q-----DTLy~~~-gRqyf~~CyIeG~VDFI-F--G~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~--r~-~~~~~~Gf 236 (340)
T PLN02176 169 Q-----DTLFDGK-GRHYYKRCVISGGIDFI-F--GYAQSIFEGCTLKLTLGIYPPNEPYGTITAQG--RP-SPSDKGGF 236 (340)
T ss_pred c-----ceeEeCC-cCEEEEecEEEecccEE-e--cCceEEEeccEEEEecccCCCCCCcEEEEeCC--CC-CCCCCcEE
Confidence 4 4444433 46788899998866644 2 245788888888631 12 21111 10 11233578
Q ss_pred EEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 256 TLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 256 ~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
.|.||.+.+.. -..+. ..-..-..+.|.|..|.+.
T Consensus 237 vF~~C~itg~g-~~yLG----RPW~~yarvVf~~t~m~~~ 271 (340)
T PLN02176 237 VFKDCTVTGVG-KALLG----RAWGSYARVIFYRSRFSDV 271 (340)
T ss_pred EEECCEEccCc-ceeee----cCCCCCceEEEEecCcCCe
Confidence 89999998742 22332 1123356788888887653
No 39
>PLN02773 pectinesterase
Probab=98.16 E-value=0.00035 Score=66.47 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEee---EEEecCCccccCCCceEEEEEeeeEEE
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDG---TIVAPTNYWALGNSGYWILFIKIDRLS 114 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~ni~ 114 (387)
|-.-||+||+++-... .--+|+|.+|+|. ..+.+... |.+++|.+++ ++..-.+... .+.-. .+. .
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~~itl~G~~~~~TiI~~~~~a~------~~~~~-~~~-~ 85 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPKT-KNLITLAGLSPEATVLTWNNTAT------KIDHH-QAS-R 85 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECcC-CccEEEEeCCCCceEEEccCccc------ccccc-ccc-c
Confidence 4788999999752222 1246899999997 34555322 4678888875 2221000000 00000 000 0
Q ss_pred EEc-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCC
Q 037377 115 VIG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQS 188 (387)
Q Consensus 115 I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~ 188 (387)
..| |+ .+ ..-.+..++++..++++|.|... ..+.+. .++.+.+.+|++.+.+
T Consensus 86 ~~g~gT-------------------~~-SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~Q-- 143 (317)
T PLN02773 86 VIGTGT-------------------FG-CGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQ-- 143 (317)
T ss_pred ccCcCc-------------------cC-ceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeeccc--
Confidence 001 11 11 12234468899999999999742 233332 4678888888888764
Q ss_pred CCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-ce-eEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 189 PNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-HG-VSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 189 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
|-+.... .+-.++||+|...=|-| + |.-...+++|++..- .| |.--+ .. ....-....|.||++.+..
T Consensus 144 ---DTL~~~~-gr~yf~~c~IeG~VDFI-F--G~g~a~Fe~c~i~s~~~g~ITA~~-r~--~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 144 ---DTLYLHY-GKQYLRDCYIEGSVDFI-F--GNSTALLEHCHIHCKSAGFITAQS-RK--SSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ---ceeEeCC-CCEEEEeeEEeecccEE-e--eccEEEEEeeEEEEccCcEEECCC-CC--CCCCCceEEEEccEEecCC
Confidence 4454443 35778888888765543 2 244678888888642 33 22111 00 1112346778888887753
Q ss_pred c--eEEEEeecCCCCceEEeEEEEeEEEec
Q 037377 267 N--GVRIKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 267 ~--gi~i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
. -..+. ..-..-..+.|.|+.|.+
T Consensus 214 ~~~~~yLG----RpW~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 214 GSGYMYLG----RPWGPFGRVVFAYTYMDA 239 (317)
T ss_pred CCcceeec----CCCCCCceEEEEecccCC
Confidence 2 12232 011234577788877765
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.10 E-value=3.8e-05 Score=68.66 Aligned_cols=94 Identities=24% Similarity=0.366 Sum_probs=63.2
Q ss_pred ceeeEEEEeEEEECC-----------CCCCCCCceeeeccccEEEEceEEecC---------CceEEeCCCceeEEEEee
Q 037377 171 SCNNVNVRNVKVVAP-----------DQSPNTDGIHVQASTGVTITGVTLKTG---------DDCISIGPGTRNLFMNNI 230 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~g---------dD~i~~~~~s~ni~i~n~ 230 (387)
.++||.|+|++|... ......|+|.+..+++|+|++|.+..+ |..+.++.++.+|+|++|
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 566666666666651 113456999999999999999999766 555788888999999999
Q ss_pred EEeCCc-eeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 231 KCGPGH-GVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 231 ~~~~~~-gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
.|.+.+ +..+|+......... .++++.++.+.++
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 998653 466777422222333 8999999988764
No 41
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.07 E-value=0.00017 Score=66.07 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=41.0
Q ss_pred CCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEE--EEEE-EEeeCCCCCcEEEEEeeEEEe
Q 037377 19 SNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRY--LIKA-AEFRGPCRNRVTLQIDGTIVA 91 (387)
Q Consensus 19 ~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y--~~~~-l~l~~~~ks~v~l~~~G~l~~ 91 (387)
.+.+++++.||-.. |=-++|++|+.. +.||++|+|-- .+.+ +.+ | ..-||++.|.|.+
T Consensus 30 ~~~~~vni~dy~~~-----dwiasfkqaf~e------~qtvvvpagl~cenint~ifi--p--~gktl~v~g~l~g 90 (464)
T PRK10123 30 PARQSVNINDYNPH-----DWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFI--P--PGKTLHILGSLRG 90 (464)
T ss_pred CCCceeehhhcCcc-----cHHHHHHHHhcc------CcEEEecCccEecccccceEe--C--CCCeEEEEEEeec
Confidence 35688999999743 556789999964 47899999942 2333 545 2 5678888887765
No 42
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.07 E-value=0.00097 Score=65.44 Aligned_cols=140 Identities=13% Similarity=0.217 Sum_probs=80.9
Q ss_pred EEEEeeccEEEEeeEEecCcc--------ceeEe-eceeeEEEEeEEEECCCCCCCCCceeee-----------ccccEE
Q 037377 144 ITFNWANNILISGLTSINSQQ--------THLVI-NSCNNVNVRNVKVVAPDQSPNTDGIHVQ-----------ASTGVT 203 (387)
Q Consensus 144 i~~~~~~nv~i~~v~i~n~~~--------~~i~~-~~~~nv~i~~~~i~~~~~~~n~DGi~~~-----------~s~nv~ 203 (387)
......+++..++++|.|... ..+.+ ...+.+.+.+|+|...+ |-+... ...+-.
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~Q-----DTLy~~~~~~~~~~~~~~~gRqY 274 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQ-----DTFFVTNSGVQNRLETDRQPRTY 274 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEeccc-----ceeeeccccccccccccccccEE
Confidence 444578999999999999743 23333 25778888999988765 333332 123578
Q ss_pred EEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCCCc-eEEEE-eec
Q 037377 204 ITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGSDN-GVRIK-SWA 275 (387)
Q Consensus 204 I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~-gi~i~-~~~ 275 (387)
+++|+|...=|-| .|.-...++||++..- .|...-. .. ....-....|.||++..... ...+. .|
T Consensus 275 f~~CyIeG~VDFI---FG~g~AvFenC~I~s~~~~~~~~g~ITA~-~t--~~~~~~GfvF~nCrit~~g~~~~yLGRpW- 347 (422)
T PRK10531 275 VKNSYIEGDVDFV---FGRGAVVFDNTEFRVVNSRTQQEAYVFAP-AT--LPNIYYGFLAINSRFNASGDGVAQLGRAW- 347 (422)
T ss_pred EEeCEEeecccEE---ccCceEEEEcCEEEEecCCCCCceEEEec-CC--CCCCCCEEEEECCEEecCCCCCeeccCCC-
Confidence 8888888765543 2345777888887531 1211111 00 12234567888888877432 12232 12
Q ss_pred CCC---------CceEEeEEEEeEEEecC
Q 037377 276 RPS---------NSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 276 ~~~---------~g~v~nI~~~ni~i~~~ 295 (387)
+.. ......++|.++.|...
T Consensus 348 ~~~s~~~~y~~~~~~~arvV~~~s~i~~~ 376 (422)
T PRK10531 348 DVDAGLSAYVNGANTNGQVVIRDSAINEG 376 (422)
T ss_pred cccccccccccccCCcceEEEEeCcccce
Confidence 111 11235678888877653
No 43
>PLN02682 pectinesterase family protein
Probab=97.95 E-value=0.0041 Score=60.28 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=118.3
Q ss_pred cCHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-|-.-||+||+++ .... --+|+|.||+|.- .+.+... |.+++|+++|. ....|...+..
T Consensus 80 Gdf~TIQ~AIdav-P~~~~~r~vI~Ik~G~Y~E-kV~Ip~~-k~~Itl~G~g~------------~~TiIt~~~~a---- 140 (369)
T PLN02682 80 GDFTTIQAAIDSL-PVINLVRVVIKVNAGTYRE-KVNIPPL-KAYITLEGAGA------------DKTIIQWGDTA---- 140 (369)
T ss_pred CCccCHHHHHhhc-cccCCceEEEEEeCceeeE-EEEEecc-CceEEEEecCC------------CccEEEecccc----
Confidence 4577899999964 3322 2478999999963 3444211 57899988862 01112111100
Q ss_pred EceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc---------ceeEe-eceeeEEEEeEEEECC
Q 037377 116 IGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ---------THLVI-NSCNNVNVRNVKVVAP 185 (387)
Q Consensus 116 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~-~~~~nv~i~~~~i~~~ 185 (387)
+.....|..+ ......-.....+++..++++|.|... ..+.+ ...+...+.+|++...
T Consensus 141 --~~~~~~g~~~----------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~ 208 (369)
T PLN02682 141 --DTPGPGGRPL----------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGA 208 (369)
T ss_pred --CccCCCCCcc----------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecc
Confidence 0000011100 011122334467899999999998642 23333 2578888999999876
Q ss_pred CCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeC---Cce-eEEeecCCCCCCCCeEEEEEEeeE
Q 037377 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGP---GHG-VSIGSLGKDFNEDGVQNITLLNAV 261 (387)
Q Consensus 186 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~i~ni~i~n~~ 261 (387)
+ |-+.... .+-.++||+|...=|-| .|.-...+++|++.. ..| +.--+ .. ....-....|.||+
T Consensus 209 Q-----DTLy~~~-gRqyf~~C~IeG~VDFI---FG~g~a~Fe~C~I~s~~~~~G~ITA~~--r~-~~~~~~GfvF~~C~ 276 (369)
T PLN02682 209 Q-----DTLYDHL-GRHYFKDCYIEGSVDFI---FGNGLSLYEGCHLHAIARNFGALTAQK--RQ-SVLEDTGFSFVNCK 276 (369)
T ss_pred c-----cceEECC-CCEEEEeeEEcccccEE---ecCceEEEEccEEEEecCCCeEEecCC--CC-CCCCCceEEEEeeE
Confidence 5 4444333 45788889998765643 234578888888863 123 22111 10 11223577888999
Q ss_pred EeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 262 FTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 262 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
+.+.. .+.+. ..-..-..+.|.|..|.+.
T Consensus 277 itg~g-~~yLG----RpW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 277 VTGSG-ALYLG----RAWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred ecCCC-ceEee----cCCCCcceEEEEeccCCCc
Confidence 88752 23333 1123456788888888764
No 44
>PLN02665 pectinesterase family protein
Probab=97.92 E-value=0.0047 Score=59.94 Aligned_cols=204 Identities=16% Similarity=0.132 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 39 STKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
|-..||+||+++ .... --+|+|.+|+|.- .+.+... |.+++|+++|. ....|...+.. .
T Consensus 79 df~TIq~AIdai-P~~~~~r~vI~Ik~GvY~E-kV~Ip~~-kp~Itl~G~~~------------~~tiIt~~~~a----~ 139 (366)
T PLN02665 79 DFKTITDAIKSI-PAGNTQRVIIDIGPGEYNE-KITIDRS-KPFVTLYGSPG------------AMPTLTFDGTA----A 139 (366)
T ss_pred CccCHHHHHhhC-cccCCceEEEEEeCcEEEE-EEEecCC-CCEEEEEecCC------------CCCEEEECCcc----C
Confidence 577899999964 3322 2368899999973 3444211 56888887751 01112111000 0
Q ss_pred c-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc---------ceeEee-ceeeEEEEeEEEECC
Q 037377 117 G-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ---------THLVIN-SCNNVNVRNVKVVAP 185 (387)
Q Consensus 117 G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~~~~i~~~ 185 (387)
. |+ ....-....++++..++++|+|... ..+.+. ..+...+.+|++...
T Consensus 140 ~~gT--------------------~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~ 199 (366)
T PLN02665 140 KYGT--------------------VYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF 199 (366)
T ss_pred CCCC--------------------cceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc
Confidence 0 11 0122334567899999999998632 233332 467888999998876
Q ss_pred CCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeC-Cce--eEEeecCCCCCCCCeEEEEEEeeEE
Q 037377 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGP-GHG--VSIGSLGKDFNEDGVQNITLLNAVF 262 (387)
Q Consensus 186 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~-~~g--i~igs~g~~~~~~~i~ni~i~n~~~ 262 (387)
+ |-+.... .+-..++|+|...=|-| .|.-...+++|++.. ..+ -.|-..+.. ....-....|.||++
T Consensus 200 Q-----DTL~~~~-gr~yf~~CyIeG~VDFI---FG~g~a~fe~C~i~s~~~~~~g~ITA~~r~-~~~~~~GfvF~~C~i 269 (366)
T PLN02665 200 Q-----DTLCDDK-GRHFFKDCYIEGTVDFI---FGSGKSLYLNTELHVVGDGGLRVITAQARN-SEAEDSGFSFVHCKV 269 (366)
T ss_pred c-----ceeEeCC-CCEEEEeeEEeecccee---ccccceeeEccEEEEecCCCcEEEEcCCCC-CCCCCceEEEEeeEE
Confidence 5 4444333 45778889998765644 234577888888863 121 111111110 112235677999999
Q ss_pred eCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 263 TGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 263 ~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
.+....+.+. ..-+.-..+.|.+..|.+.
T Consensus 270 tg~~~~~yLG----RpW~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 270 TGTGTGAYLG----RAWMSRPRVVFAYTEMSSV 298 (366)
T ss_pred ecCCCceeec----CCCCCcceEEEEccccCCe
Confidence 8864234443 1123355788888888753
No 45
>smart00656 Amb_all Amb_all domain.
Probab=97.91 E-value=0.00068 Score=60.13 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred EEEEEeeccEEEEeeEEecCcc------ceeEeeceeeEEEEeEEEECCCC----CCCCCce-eee-ccccEEEEceEEe
Q 037377 143 SITFNWANNILISGLTSINSQQ------THLVINSCNNVNVRNVKVVAPDQ----SPNTDGI-HVQ-ASTGVTITGVTLK 210 (387)
Q Consensus 143 ~i~~~~~~nv~i~~v~i~n~~~------~~i~~~~~~nv~i~~~~i~~~~~----~~n~DGi-~~~-~s~nv~I~n~~i~ 210 (387)
.+.+..++||.|+++++++... .+|.+..+++|.|++|++..... ..-.||. ++. .+.+++|++|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3666678899999999987533 67888899999999999987510 1113553 544 4789999999998
Q ss_pred cCCceEEeCCCc-------eeEEEEeeEEeCCce--eEEeecCCCCCCCCeEEEEEEeeEEeCCC-ceEEE
Q 037377 211 TGDDCISIGPGT-------RNLFMNNIKCGPGHG--VSIGSLGKDFNEDGVQNITLLNAVFTGSD-NGVRI 271 (387)
Q Consensus 211 ~gdD~i~~~~~s-------~ni~i~n~~~~~~~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~-~gi~i 271 (387)
...-+..+.++. .+|++.+|.+.+..+ -.+. . -.+.+-|+.+.+.. +++.+
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~--g~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------F--GYVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------C--CEEEEEeeEEeCcccEeEec
Confidence 766656555532 269999999865322 2221 1 15788888888764 44443
No 46
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.91 E-value=0.00099 Score=60.10 Aligned_cols=122 Identities=31% Similarity=0.477 Sum_probs=80.3
Q ss_pred EEEeeEEecCc------cceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEE
Q 037377 153 LISGLTSINSQ------QTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLF 226 (387)
Q Consensus 153 ~i~~v~i~n~~------~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~ 226 (387)
.|+++++.... ..++++..++++.++|+++.+.. .+|+.+..+....+.+..... ++.+..++.++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~----~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG----GDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S----S-SEEEECCEECEEECCEEEE---EEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC----ccEEEEEccccCcEeecccce---eeeeccceeEEE
Confidence 37777775432 24588888999999999998754 378888755544444433221 233333356777
Q ss_pred EEeeEEeCC-ceeEEeecCCCCCCCCeEEEEEEeeEEeC-CCceEEEEeecCCCCceEEeEEEEeEEEecCCccE
Q 037377 227 MNNIKCGPG-HGVSIGSLGKDFNEDGVQNITLLNAVFTG-SDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPI 299 (387)
Q Consensus 227 i~n~~~~~~-~gi~igs~g~~~~~~~i~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i 299 (387)
+.++.+..+ .|+..++ ++++++||.+.+ ...|+.+... +++.++|++++++..+|
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEESSSEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEECCccCc
Confidence 888888765 3543333 789999999988 6688888643 23888888888887765
No 47
>PLN02304 probable pectinesterase
Probab=97.86 E-value=0.0043 Score=60.24 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=113.0
Q ss_pred cCHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 38 DSTKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
-|-.-||+||+++-..+ .--+|+|.+|+|.- .+.+... |.+++|+++|. ....|...+... .
T Consensus 85 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~E-kV~Ip~~-K~~Itl~G~g~------------~~TiIt~~~~a~---~ 147 (379)
T PLN02304 85 CNFTTVQSAVDAVGNFSQKRNVIWINSGIYYE-KVTVPKT-KPNITFQGQGF------------DSTAIAWNDTAK---S 147 (379)
T ss_pred CCccCHHHHHhhCcccCCCcEEEEEeCeEeEE-EEEECCC-CCcEEEEecCC------------CCcEEEccCccc---C
Confidence 34678999999752211 23468999999973 3444211 67899988861 001111110000 0
Q ss_pred c-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc---------ceeEee-ceeeEEEEeEEEECC
Q 037377 117 G-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ---------THLVIN-SCNNVNVRNVKVVAP 185 (387)
Q Consensus 117 G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---------~~i~~~-~~~nv~i~~~~i~~~ 185 (387)
+ |+. ...-.....+++..++++|.|... ..+.+. .++...+.+|++...
T Consensus 148 ~~gT~--------------------~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~ 207 (379)
T PLN02304 148 ANGTF--------------------YSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGA 207 (379)
T ss_pred CCCcc--------------------ceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecc
Confidence 0 111 012223346888889999988641 233332 577888888888876
Q ss_pred CCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-----------ce-eEEeecCCCCCCCCeE
Q 037377 186 DQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-----------HG-VSIGSLGKDFNEDGVQ 253 (387)
Q Consensus 186 ~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-----------~g-i~igs~g~~~~~~~i~ 253 (387)
+ |-+.... .+-.++||+|...=|-| .|.-...+++|++..- .| |.--+ + .....-.
T Consensus 208 Q-----DTLy~~~-gR~Yf~~CyIeG~VDFI---FG~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~--R-t~~~~~~ 275 (379)
T PLN02304 208 Q-----DTLHDDR-GRHYFKDCYIQGSIDFI---FGDARSLYENCRLISMANPVPPGSKSINGAVTAHG--R-TSKDENT 275 (379)
T ss_pred c-----ceeEeCC-CCEEEEeeEEcccccEE---eccceEEEEccEEEEecCCcccccccCceEEEecC--C-CCCCCCc
Confidence 5 4444333 35778888888765543 2234678888887631 12 11111 0 0122345
Q ss_pred EEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 254 NITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 254 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
...|.||.+.+.. -+.+. ..-..-..+.|.+..|.+.
T Consensus 276 GfvF~~C~itg~g-~vyLG----RPW~pysrvVf~~t~m~~~ 312 (379)
T PLN02304 276 GFSFVNCTIGGTG-RIWLG----RAWRPYSRVVFAYTSMTDI 312 (379)
T ss_pred eEEEECCEEccCc-ceeec----CCCCCcceEEEEecccCCE
Confidence 7778888887642 23332 1122356777877777653
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.85 E-value=0.0028 Score=64.93 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=80.5
Q ss_pred cCHHHHHHHHHHHhhcC--CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRSA--KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~--~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-+-.-||+||+++-... .--+|+|.+|+|.- .+.+... |.+++|.++|. ....|... .+...
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E-~V~i~~~-k~~v~l~G~g~------------~~TiIt~~--~~~~~ 314 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEE-TVRVPLE-KKNVVFLGDGM------------GKTVITGS--LNVGQ 314 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCceEEe-eeeecCC-CccEEEEecCC------------CceEEEec--CccCC
Confidence 35778999999753211 22489999999973 3444222 57888888862 01111111 00000
Q ss_pred Ec-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCC
Q 037377 116 IG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSP 189 (387)
Q Consensus 116 ~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~ 189 (387)
.| ++. + ..-.....+++..++++|.|... ..+.+. .++.+.+.+|+|...+
T Consensus 315 ~g~~T~-------------------~-saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q--- 371 (553)
T PLN02708 315 PGISTY-------------------N-TATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ--- 371 (553)
T ss_pred CCcCcc-------------------c-eEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc---
Confidence 01 110 1 12223356788889999988643 233332 4566667777776654
Q ss_pred CCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 037377 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCG 233 (387)
Q Consensus 190 n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 233 (387)
|-+...+ .+-..++|+|...=|-| .|.-...++||.+.
T Consensus 372 --DTLy~~~-~rq~y~~C~I~GtVDFI---FG~a~avfq~c~i~ 409 (553)
T PLN02708 372 --DTLYAHS-LRQFYKSCRIQGNVDFI---FGNSAAVFQDCAIL 409 (553)
T ss_pred --ccceeCC-CceEEEeeEEeecCCEE---ecCceEEEEccEEE
Confidence 3344333 23456666666654433 22345666666664
No 49
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0034 Score=63.52 Aligned_cols=206 Identities=13% Similarity=0.134 Sum_probs=117.6
Q ss_pred cCHHHHHHHHHHHhhc--CCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRS--AKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~--~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-|-.-||+||+++... ..--+|+|.+|+|.- .+.+... |.+++|.++|. ....|.....
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~nItl~G~g~------------~~TiIt~~~~----- 295 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPTK-QKNVMLVGDGK------------GKTVIVGSRS----- 295 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCCC-CceEEEEEcCC------------CCeEEEeCCc-----
Confidence 3577899999854221 123579999999973 3444222 57888888762 0111111100
Q ss_pred EceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCC
Q 037377 116 IGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPN 190 (387)
Q Consensus 116 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n 190 (387)
.-+|-+ ..+ ..-.....+++..++++|.|... ..+.+. .++...+.+|++...+
T Consensus 296 ---~~~g~~-------------T~~-SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQ---- 354 (529)
T PLN02170 296 ---NRGGWT-------------TYQ-TATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQ---- 354 (529)
T ss_pred ---CCCCCc-------------ccc-ceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccC----
Confidence 000000 001 12234456889999999998742 233333 5788899999998765
Q ss_pred CCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-----ceeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 191 TDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-----HGVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 191 ~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||.+..- .| .|=..++. ....-..+.|.||++.+.
T Consensus 355 -DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~~~~~~~~~g-~ITAq~R~-~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 355 -DSLYTHS-KRQFYRETDITGTVDFI---FGNSAVVFQSCNIAARKPSGDRN-YVTAQGRS-DPNQNTGISIHNCRITAE 427 (529)
T ss_pred -CcceeCC-CCEEEEeeEEcccccee---cccceEEEeccEEEEecCCCCce-EEEecCCC-CCCCCceEEEEeeEEecC
Confidence 4455444 35678999998765543 3345788888888632 12 12111111 122345788999999875
Q ss_pred CceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 266 DNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 266 ~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
. ...+. ..-..-..+.|.+..|.+.
T Consensus 428 ~-~~yLG----RPW~~ysrvVf~~t~l~~~ 452 (529)
T PLN02170 428 S-MTYLG----RPWKEYSRTVVMQSFIDGS 452 (529)
T ss_pred C-ceeee----CCCCCCceEEEEecccCCe
Confidence 3 23332 1122356677888777653
No 50
>PLN02671 pectinesterase
Probab=97.76 E-value=0.011 Score=57.16 Aligned_cols=213 Identities=12% Similarity=0.139 Sum_probs=114.7
Q ss_pred cCHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 38 DSTKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
-|-.-||+||+++-..+ .--+|+|.||+|.-. +.+... |.+++|+++|.- .....|......
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~~Itl~G~g~~----------~~~TvIt~~~~a----- 131 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KPYISFIGNESR----------AGDTVISWNDKA----- 131 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CCeEEEEecCCC----------CCCEEEEcCCcc-----
Confidence 35778999999752222 224799999999733 444211 568888776410 001111111000
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc--------ceeEee-ceeeEEEEeEEEECCCC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ--------THLVIN-SCNNVNVRNVKVVAPDQ 187 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~--------~~i~~~-~~~nv~i~~~~i~~~~~ 187 (387)
+....+|..| ...+ ..-.....+++..++++|.|... ..+.+. ..+.+.+.+|++...+
T Consensus 132 -~~~~~~g~~~---------gT~~-SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~Q- 199 (359)
T PLN02671 132 -SDLDSNGFEL---------GTYR-TASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQ- 199 (359)
T ss_pred -cccccCCccc---------ccee-eEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccc-
Confidence 0011111111 0111 22234456888889999988721 233332 4678888888888765
Q ss_pred CCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce-eEEeecCCCCCCCCeEEEEEEeeEEe
Q 037377 188 SPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG-VSIGSLGKDFNEDGVQNITLLNAVFT 263 (387)
Q Consensus 188 ~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~i~ni~i~n~~~~ 263 (387)
|-+.... .+-.+++|+|...=|-| . |.-...++||++..- .| +.--+- . ....-....|.||++.
T Consensus 200 ----DTLy~~~-gR~yf~~CyIeG~VDFI-F--G~g~A~Fe~C~I~s~~~~~G~ITA~~r--~-~~~~~~GfvF~~C~it 268 (359)
T PLN02671 200 ----DTLLDET-GSHYFYQCYIQGSVDFI-F--GNAKSLYQDCVIQSTAKRSGAIAAHHR--D-SPTEDTGFSFVNCVIN 268 (359)
T ss_pred ----cccEeCC-CcEEEEecEEEEeccEE-e--cceeEEEeccEEEEecCCCeEEEeecc--C-CCCCCccEEEEccEEc
Confidence 3344333 35688888888765644 2 234688888888632 23 222111 0 1122356788888887
Q ss_pred CCCceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 264 GSDNGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 264 ~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
+. ....+.= .-+.-..+.|.|..|.+.
T Consensus 269 g~-g~vyLGR----PW~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 269 GT-GKIYLGR----AWGNYSRTVYSNCFIADI 295 (359)
T ss_pred cC-ccEEEeC----CCCCCceEEEEecccCCe
Confidence 64 2333330 112346778888887653
No 51
>PLN02197 pectinesterase
Probab=97.71 E-value=0.0096 Score=61.33 Aligned_cols=215 Identities=12% Similarity=0.073 Sum_probs=120.9
Q ss_pred cCHHHHHHHHHHHhhcCC-CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 38 DSTKPFLKAWASACRSAK-ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~~-g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
-|-.-||+||+++-.... --+|+|.+|+|.- .+.+... |.+++|+++|. ....|... .+...
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~ni~l~G~g~------------~~TiIt~~--~~~~~- 347 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAGIYNE-QVTIPKK-KNNIFMFGDGA------------RKTVISYN--RSVKL- 347 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCceEEE-EEEccCC-CceEEEEEcCC------------CCeEEEec--ccccc-
Confidence 357789999986522221 2368999999974 3444221 57888888862 01122211 01000
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNT 191 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 191 (387)
.+|.+ ..+... .....+++..++++|.|... ..+.+. .++...+.+|+|...+
T Consensus 348 ---~~g~~-------------T~~SaT-~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ----- 405 (588)
T PLN02197 348 ---SPGTT-------------TSLSGT-VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ----- 405 (588)
T ss_pred ---CCCCc-------------ccceeE-EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----
Confidence 01100 001112 33457889999999999643 344443 5788999999999865
Q ss_pred CceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 192 DGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 192 DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||++..- .| -.|-..+.......-..+.|.||.+.+..
T Consensus 406 DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 406 DTLYVNN-GRQFYRNIVVSGTVDFI---FGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred cceEecC-CCEEEEeeEEEeccccc---ccceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 4565544 45689999999865533 3345688999988631 12 12211221100123467899999998853
Q ss_pred ce----EEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NG----VRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~g----i~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
.- ...+.+-|..-..-..+.|.+..|.+.
T Consensus 482 ~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 482 KLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred cccccccccccccCCCCCCCceEEEEecccCCe
Confidence 21 111111111223466788888888654
No 52
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.70 E-value=0.01 Score=60.25 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 38 DSTKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
-|-..||+||+++-..+ .--+|+|.+|+|.- .+.+... |.+++|.++|. ....|.....
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~~i~l~G~g~------------~~TiIt~~~~------ 275 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKGVYLE-NVEIKKK-KWNIMMVGDGI------------DATVITGNRS------ 275 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCceeEE-EEEecCC-CceEEEEecCC------------CCcEEEeCCc------
Confidence 35778999998652221 23579999999973 3444322 56888888762 0111111100
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNT 191 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 191 (387)
..||.+ ..+ ..-.....+++..++++|.|... ..+.+. .++...+.+|++...+
T Consensus 276 --~~~g~~-------------T~~-SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q----- 334 (520)
T PLN02201 276 --FIDGWT-------------TFR-SATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ----- 334 (520)
T ss_pred --cCCCCc-------------ccc-eEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----
Confidence 001100 001 12233456888899999998743 334443 5788999999998765
Q ss_pred CceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ce-eEEeecCCCCCCCCeEEEEEEeeEEeC
Q 037377 192 DGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HG-VSIGSLGKDFNEDGVQNITLLNAVFTG 264 (387)
Q Consensus 192 DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~i~n~~~~~ 264 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||++..- .| +.- .+.. ....-..+.|.||.+..
T Consensus 335 DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~~iTA--q~r~-~~~~~~Gfvf~~C~it~ 407 (520)
T PLN02201 335 DTLYTHT-MRQFYRECRITGTVDFI---FGDATAVFQNCQILAKKGLPNQKNTITA--QGRK-DPNQPTGFSIQFSNISA 407 (520)
T ss_pred CeeEeCC-CCEEEEeeEEeecccEE---ecCceEEEEccEEEEecCCCCCCceEEe--cCCC-CCCCCcEEEEEeeEEec
Confidence 4455544 34678899999865643 2345788999988641 12 222 1110 12334578899999987
Q ss_pred CCce--------EEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 265 SDNG--------VRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 265 ~~~g--------i~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
.... ..+. ..-..-..+.|.+..|.+.
T Consensus 408 ~~~~~~~~~~~~~yLG----RPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 408 DTDLLPYLNTTATYLG----RPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred CccccccccccceEee----cCCCCCceEEEEecCcCCe
Confidence 4321 2222 1223466788888888764
No 53
>PLN02432 putative pectinesterase
Probab=97.68 E-value=0.021 Score=53.89 Aligned_cols=198 Identities=13% Similarity=0.111 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 39 STKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
|-.-||+||+++ .... --+|+|.+|+|.- .+.+... |.+++|.++|. ....|...+..
T Consensus 22 ~f~TIq~Aida~-p~~~~~~~~I~I~~G~Y~E-~V~ip~~-k~~itl~G~~~------------~~TvI~~~~~~----- 81 (293)
T PLN02432 22 DFRKIQDAIDAV-PSNNSQLVFIWVKPGIYRE-KVVVPAD-KPFITLSGTQA------------SNTIITWNDGG----- 81 (293)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCceeEE-EEEEecc-CceEEEEEcCC------------CCeEEEecCCc-----
Confidence 578999999975 3322 2468999999953 3444211 56788877651 01111111000
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc---ceeEe-eceeeEEEEeEEEECCCCCCCCC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ---THLVI-NSCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~---~~i~~-~~~~nv~i~~~~i~~~~~~~n~D 192 (387)
++ . +...+ ....+++..++++|+|... ..+.+ ...+...+.+|++...+ |
T Consensus 82 -~~------------------~-~saT~-~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q-----D 135 (293)
T PLN02432 82 -DI------------------F-ESPTL-SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ-----D 135 (293)
T ss_pred -cc------------------c-cceEE-EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----c
Confidence 00 0 01122 3356888889999988632 22332 24677888888887654 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeC---Cce-eEEeecCCCCCCCCeEEEEEEeeEEeCCCce
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGP---GHG-VSIGSLGKDFNEDGVQNITLLNAVFTGSDNG 268 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~~~g 268 (387)
-+.... .+-.++||.|...=|-| . |.-...+++|++.. ..| +.--+- . ....-....|.||++.+.. .
T Consensus 136 TLy~~~-gr~yf~~c~I~G~VDFI-F--G~g~a~Fe~c~i~s~~~~~g~itA~~r-~--~~~~~~Gfvf~~c~itg~g-~ 207 (293)
T PLN02432 136 TLLDDT-GRHYYRNCYIEGATDFI-C--GNAASLFEKCHLHSLSPNNGAITAQQR-T--SASENTGFTFLGCKLTGAG-T 207 (293)
T ss_pred eeEECC-CCEEEEeCEEEecccEE-e--cCceEEEEeeEEEEecCCCCeEEecCC-C--CCCCCceEEEEeeEEcccc-h
Confidence 444333 35678888888765543 2 23467788888753 123 222110 0 1122346778888887532 2
Q ss_pred EEEEeecCCCCceEEeEEEEeEEEec
Q 037377 269 VRIKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 269 i~i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
..+. ..-+.-..+.|.|..|.+
T Consensus 208 ~yLG----RpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 208 TYLG----RPWGPYSRVVFALSYMSS 229 (293)
T ss_pred hhcc----CCCCCccEEEEEecccCC
Confidence 2222 112335567777777764
No 54
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0071 Score=62.20 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
+-.-||+||+++-... .--+|+|.+|+|.- .+.+... |.|++|.++|. ....|... .+
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k~~i~~~G~g~------------~~tiIt~~--~~----- 327 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-KWNVVMVGDGM------------SKTIVSGS--LN----- 327 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-CCeEEEEecCC------------CCCEEEeC--Cc-----
Confidence 4678999998753221 23479999999973 4444322 56888888762 01111110 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEe-eceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVI-NSCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~-~~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..||.. ..+... .....+++..++++|+|... ..+.+ ..++...+.+|++...+ |
T Consensus 328 -~~dg~~-------------t~~saT-~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----D 387 (565)
T PLN02468 328 -FVDGTP-------------TFSTAT-FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ-----D 387 (565)
T ss_pred -cCCCCC-------------ccceee-eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc-----c
Confidence 011110 001112 23356889999999998643 33333 36788999999998865 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
-+.... ..-..++|+|...=|-| .|.-...++||.+..- .+ .|-..|+. +...-..+.|.||++....
T Consensus 388 TLy~~~-~rq~y~~C~I~GtvDFI---FG~a~avfq~c~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 388 TLYAHA-QRQFYRECNIYGTVDFI---FGNSAVVFQNCNILPRRPMKGQQN-TITAQGRT-DPNQNTGISIQNCTILPLG 461 (565)
T ss_pred hhccCC-CceEEEeeEEeccccee---eccceEEEeccEEEEecCCCCCCc-eEEecCCC-CCCCCceEEEEccEEecCC
Confidence 455444 34678999998865543 3356888999988531 12 12111111 1233467889999998753
Q ss_pred ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..-..+.+-|..-..-..+.|.+..|.+.
T Consensus 462 ~~~~~~~yLGRPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 462 DLTSVKTFLGRPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred CccccceeeecCCCCCceEEEEecccCCe
Confidence 21111111111123345677888777654
No 55
>PLN02916 pectinesterase family protein
Probab=97.63 E-value=0.015 Score=58.62 Aligned_cols=210 Identities=16% Similarity=0.107 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHhhc----CCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEE
Q 037377 39 STKPFLKAWASACRS----AKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLS 114 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~----~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~ 114 (387)
|-.-||+||+++-+. ..--+|+|.||+|.- .+.+... |.+++|.++|. ....|... .+
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~~i~l~G~g~------------~~TiIt~~--~~-- 259 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYNE-KVEIDRH-MKNVMFVGDGM------------DKTIITNN--RN-- 259 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceeeE-EEEecCC-CceEEEEecCC------------CCcEEEeC--Cc--
Confidence 567899999865221 112479999999973 3444322 56888888762 01111111 00
Q ss_pred EEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCC
Q 037377 115 VIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSP 189 (387)
Q Consensus 115 I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~ 189 (387)
.-+|.+ ..+ ..-.....+++..++++|.|... ..+.+. .++...+.+|++...+
T Consensus 260 ----~~~g~~-------------T~~-SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q--- 318 (502)
T PLN02916 260 ----VPDGST-------------TYS-SATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ--- 318 (502)
T ss_pred ----cCCCCc-------------cee-eEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccC---
Confidence 001100 001 12233456788899999998632 334433 5788899999998865
Q ss_pred CCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEe
Q 037377 190 NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFT 263 (387)
Q Consensus 190 n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~ 263 (387)
|-+...+ .+-..++|+|...=|-| .|.-...++||.+..- .| .|=..+.. ....-..+.|.||++.
T Consensus 319 --DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avFq~C~I~~~~~~~~~~g-~ITAq~r~-~~~~~tGfvf~~C~it 390 (502)
T PLN02916 319 --DTLFVHS-LRQFYRDCHIYGTIDFI---FGDAAVVFQNCDIFVRRPMDHQGN-MITAQGRD-DPHENTGISIQHSRVR 390 (502)
T ss_pred --ceeEeCC-CCEEEEecEEeccccee---ccCceEEEecCEEEEecCCCCCcc-eEEecCCC-CCCCCcEEEEEeeEEe
Confidence 4455544 35788999999865643 3356888899988531 12 12111111 1223468889999998
Q ss_pred CCCceEE----EEeecCCCCceEEeEEEEeEEEecC
Q 037377 264 GSDNGVR----IKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 264 ~~~~gi~----i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
....... .+.+=|..-..-..+.|.+..|.+.
T Consensus 391 ~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 391 ASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGL 426 (502)
T ss_pred cCccccccccccceEeecCCCCCceEEEEecccCCe
Confidence 7531100 1111111223456788888888764
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.62 E-value=0.016 Score=59.98 Aligned_cols=209 Identities=15% Similarity=0.122 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-.-||+||+++-... .--+|+|.+|+|.-. +.+... |.+++|+++|. ....|.... +. -.|
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~~i~l~G~g~------------~~TiIt~~~--~~-~~g 358 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDET-VTVDKK-MVNVTMYGDGS------------QKTIVTGNK--NF-ADG 358 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEEE-EEEcCC-CceEEEEecCC------------CceEEEECC--cc-cCC
Confidence 5678999998652221 224789999999743 444322 56888888862 011111100 00 001
Q ss_pred -eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCC
Q 037377 118 -GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNT 191 (387)
Q Consensus 118 -G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 191 (387)
++. +...+ ....+++..++++|.|... ..+.+. .++...+.+|+|...+
T Consensus 359 ~~T~-------------------~saT~-~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q----- 413 (596)
T PLN02745 359 VRTF-------------------RTATF-VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ----- 413 (596)
T ss_pred Ccce-------------------eeEEE-EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc-----
Confidence 111 11222 3357889999999998632 334433 5789999999999865
Q ss_pred CceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 192 DGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 192 DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||.+..- .+ .|=..+.. +...-..+.|.||++...
T Consensus 414 DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~-~iTAq~r~-~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 414 DTLYAQT-HRQFYRSCVITGTIDFI---FGDAAAIFQNCLIFVRKPLPNQQN-TVTAQGRV-DKFETTGIVLQNCRIAPD 487 (596)
T ss_pred cccccCC-CcEEEEeeEEEeeccEE---ecceeEEEEecEEEEecCCCCCCc-eEEecCCC-CCCCCceEEEEeeEEecC
Confidence 4454443 45789999999865633 3346888999998632 12 12111110 122346888999999875
Q ss_pred CceEE----EEeecCCCCceEEeEEEEeEEEecC
Q 037377 266 DNGVR----IKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 266 ~~gi~----i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..... .+.+-|..-..-..+.|.+..|.+.
T Consensus 488 ~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 488 EDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDV 521 (596)
T ss_pred ccccccccccceeccCCCCCCccEEEEecccCCe
Confidence 32111 1111111223456778888887654
No 57
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.62 E-value=0.0022 Score=60.85 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=70.5
Q ss_pred cCHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEE
Q 037377 38 DSTKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSV 115 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I 115 (387)
-|-.-||+||+++ .... .-+|+|.||+|.- .+.+... |.+++|.++|. ....|... .+
T Consensus 10 gdf~TIq~Aida~-p~~~~~~~~I~I~~G~Y~E-~V~i~~~-k~~v~l~G~~~------------~~tiI~~~--~~--- 69 (298)
T PF01095_consen 10 GDFTTIQAAIDAA-PDNNTSRYTIFIKPGTYRE-KVTIPRS-KPNVTLIGEGR------------DKTIITGN--DN--- 69 (298)
T ss_dssp SSBSSHHHHHHHS--SSSSS-EEEEE-SEEEE---EEE-ST-STTEEEEES-T------------TTEEEEE--------
T ss_pred CCccCHHHHHHhc-hhcCCceEEEEEeCeeEcc-ccEeccc-cceEEEEecCC------------CceEEEEe--cc---
Confidence 4678899999975 4322 2479999999973 3555322 46888888751 01111110 00
Q ss_pred EceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCccc----eeEe-eceeeEEEEeEEEECCCCCCC
Q 037377 116 IGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQT----HLVI-NSCNNVNVRNVKVVAPDQSPN 190 (387)
Q Consensus 116 ~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~----~i~~-~~~~nv~i~~~~i~~~~~~~n 190 (387)
..++.+ ..+...+ ....+++.+++++|.|.... .+.+ ..++...+.+|++.+.+
T Consensus 70 ---~~~~~~-------------t~~saT~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~Q---- 128 (298)
T PF01095_consen 70 ---AADGGG-------------TFRSATF-SVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQ---- 128 (298)
T ss_dssp ---TTTB-H-------------CGGC-SE-EE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-ST----
T ss_pred ---cccccc-------------ccccccc-cccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEcccc----
Confidence 000000 0011123 33578999999999986321 1111 23456666666666543
Q ss_pred CCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEe
Q 037377 191 TDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCG 233 (387)
Q Consensus 191 ~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~ 233 (387)
|-+.... .+..++||+|...-|-|-= .-...+++|++.
T Consensus 129 -DTL~~~~-~r~y~~~c~IeG~vDFIfG---~~~a~f~~c~i~ 166 (298)
T PF01095_consen 129 -DTLYANG-GRQYFKNCYIEGNVDFIFG---NGTAVFENCTIH 166 (298)
T ss_dssp -T-EEE-S-SEEEEES-EEEESEEEEEE---SSEEEEES-EEE
T ss_pred -ceeeecc-ceeEEEeeEEEecCcEEEC---CeeEEeeeeEEE
Confidence 3444333 3456666666665553311 224556666654
No 58
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.57 E-value=0.0096 Score=60.91 Aligned_cols=209 Identities=13% Similarity=0.133 Sum_probs=118.8
Q ss_pred cCHHHHHHHHHHHhhcCC-----CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeE
Q 037377 38 DSTKPFLKAWASACRSAK-----ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDR 112 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~~-----g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 112 (387)
-+-.-||+||+++ .... --+|||.+|+|.- .+.+... |.+++|.++|. ....|... .+
T Consensus 233 G~f~TI~~Av~a~-p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k~~i~l~G~g~------------~~tiIt~~--~~ 295 (538)
T PLN03043 233 DNFTTITDAIAAA-PNNSKPEDGYFVIYAREGYYEE-YVVVPKN-KKNIMLIGDGI------------NKTIITGN--HS 295 (538)
T ss_pred CCCcCHHHHHHhc-cccCCCCcceEEEEEcCeeeEE-EEEeCCC-CCcEEEEecCC------------CCeEEEeC--Cc
Confidence 3577899999864 3321 1379999999963 3444222 57888888761 01111111 00
Q ss_pred EEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCC
Q 037377 113 LSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQ 187 (387)
Q Consensus 113 i~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~ 187 (387)
..|| |. ..+ ..-.....+++..++++|+|... ..+.+. .++...+.+|+|...+
T Consensus 296 ------~~dg-----~~--------T~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQ- 354 (538)
T PLN03043 296 ------VVDG-----WT--------TFN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQ- 354 (538)
T ss_pred ------cCCC-----Cc--------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccC-
Confidence 0111 10 001 12234456899999999999643 334433 5678999999998865
Q ss_pred CCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ce-eEEeecCCCCCCCCeEEEEEEee
Q 037377 188 SPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HG-VSIGSLGKDFNEDGVQNITLLNA 260 (387)
Q Consensus 188 ~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~i~n~ 260 (387)
|-+...+ .+-..++|+|...=|-| .|.-...++||.+..- .+ |.- .|.. ....-..+.|.||
T Consensus 355 ----DTLy~~~-~rq~y~~c~I~GtVDFI---FG~a~avfq~c~i~~r~~~~~~~~~iTA--~~r~-~~~~~tG~~~~~c 423 (538)
T PLN03043 355 ----DTLYVHS-LRQFYRECDIYGTVDFI---FGNAAAIFQNCNLYARKPMANQKNAFTA--QGRT-DPNQNTGISIINC 423 (538)
T ss_pred ----cccccCC-CcEEEEeeEEeeccceE---eecceeeeeccEEEEecCCCCCCceEEe--cCCC-CCCCCceEEEEec
Confidence 4455444 35788999998865543 2345888999988531 12 222 1111 1223467889999
Q ss_pred EEeCCCceE----EEEeecCCCCceEEeEEEEeEEEecC
Q 037377 261 VFTGSDNGV----RIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 261 ~~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
++.....-. ..+.+=|..-..-..+.|.+..|.+.
T Consensus 424 ~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 424 TIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDL 462 (538)
T ss_pred EEecCCcccccccccceeccCCCCCCceEEEEecccCCe
Confidence 998753210 01111111113356777888777654
No 59
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.57 E-value=0.024 Score=57.66 Aligned_cols=210 Identities=11% Similarity=0.134 Sum_probs=118.6
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
+-.-||+||+++-... .--+|+|.||+|. ..+.+... |.+++|+++|. ....|.... +
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k~~itl~G~g~------------~~TiIt~~~--~----- 287 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-KTMIMFIGDGI------------GKTVIKANR--S----- 287 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-CceEEEEEcCC------------CCcEEEeCC--c-----
Confidence 4678999999652221 2247999999998 44555322 56888888762 011111110 0
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..||.+ ..+ ..-.....+++..++++|.|... ..+.+. .++...+.+|++...+ |
T Consensus 288 -~~dg~~-------------T~~-SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----D 347 (530)
T PLN02933 288 -RIDGWS-------------TFQ-TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----D 347 (530)
T ss_pred -cCCCCc-------------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----c
Confidence 001100 001 12233456889999999998643 334443 5788999999998865 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
-+.... .+-..++|+|...=|-| .|.-...++||.+..- .+ .|=..+.. ....-..+.|.||.+....
T Consensus 348 TLy~~~-~Rqyy~~C~IeGtVDFI---FG~a~avFq~C~i~~~~~~~~~~~-~iTAq~r~-~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 348 TLYVHS-AKQFYRECDIYGTIDFI---FGNAAVVFQNCSLYARKPNPNHKI-AFTAQSRN-QSDQPTGISIISSRILAAP 421 (530)
T ss_pred ccccCC-CceEEEeeEEeccccee---ccCceEEEeccEEEEeccCCCCce-EEEecCCC-CCCCCceEEEEeeEEecCC
Confidence 454444 34689999999865543 3345788899988531 12 12111110 1223457889999998742
Q ss_pred ceEEE----EeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGVRI----KSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi~i----~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..... +.+=|..-..-..+.|.+..|.+.
T Consensus 422 ~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 422 DLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDL 454 (530)
T ss_pred cccccccccceEeccCCCCCceEEEEecccCCe
Confidence 21110 111011223456788888888764
No 60
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.57 E-value=0.011 Score=60.52 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-.-||+||+++-... .--+|+|.+|+|.- .+.+... |.+++|.++|. ....|... .+
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~~i~l~G~g~------------~~TiIt~~--~~----- 299 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPIY-KTNIVLIGDGS------------DVTFITGN--RS----- 299 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCCC-CccEEEEecCC------------CceEEeCC--Cc-----
Confidence 5778999998652222 12368999999963 3444222 57888888762 00111110 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..|| |. ..+...+ ....+++..++++|.|... ..+.+. .++...+.+|+|...+ |
T Consensus 300 -~~~g-----~~--------T~~saT~-~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q-----D 359 (541)
T PLN02416 300 -VVDG-----WT--------TFRSATL-AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQ-----D 359 (541)
T ss_pred -cCCC-----CC--------ccceEEE-EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEeccc-----c
Confidence 0011 00 0111223 3357889999999998643 223332 5677888888888765 3
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCCc
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSDN 267 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~~ 267 (387)
-+...+ .+-..++|+|...=|-| .|.-...++||++..- .| -.|-..+.. ....-..+.|.||++.....
T Consensus 360 TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~ 434 (541)
T PLN02416 360 TLYVHS-FRQFYRECDIYGTIDYI---FGNAAVVFQACNIVSKMPMPGQFTVITAQSRD-TPDEDTGISIQNCSILATED 434 (541)
T ss_pred hhccCC-CceEEEeeEEeecccee---eccceEEEeccEEEEecCCCCCceEEECCCCC-CCCCCCEEEEEeeEEecCCc
Confidence 344333 35678888888765533 2345777888877531 11 112111110 11234577788888876431
Q ss_pred eE----EEEeecCCCCceEEeEEEEeEEEecC
Q 037377 268 GV----RIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 268 gi----~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-. ..+.+-|..-..-..+.|.+..|.+.
T Consensus 435 ~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~ 466 (541)
T PLN02416 435 LYSNSNSVKSYLGRPWRVYSRTVVLESYIDDF 466 (541)
T ss_pred cccccccccccccCCCCCCccEEEEecccCCe
Confidence 11 11111111112345667777776653
No 61
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.023 Score=52.81 Aligned_cols=118 Identities=14% Similarity=0.243 Sum_probs=65.6
Q ss_pred cceeEe-eceeeEEEEeEEEECCCC---CCCCCc-eeee-ccccEEEEceEEecCCceEEeCCC--------ceeEEEEe
Q 037377 164 QTHLVI-NSCNNVNVRNVKVVAPDQ---SPNTDG-IHVQ-ASTGVTITGVTLKTGDDCISIGPG--------TRNLFMNN 229 (387)
Q Consensus 164 ~~~i~~-~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~nv~I~n~~i~~gdD~i~~~~~--------s~ni~i~n 229 (387)
...|.+ ..++|+.|+++++..... ..-.|| +|+. .+.+|+|++|.+...|-..-+... -.+|++.+
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hh 223 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHH 223 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEec
Confidence 344555 456667777777765321 122355 4554 357889999988877665555442 24589999
Q ss_pred eEEeCC--ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCC-ceEEEEeecCCCCceEEeEEEEeEEEecCCccE
Q 037377 230 IKCGPG--HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSD-NGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPI 299 (387)
Q Consensus 230 ~~~~~~--~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i 299 (387)
|.|.+. ++ +++|. +.+-|++..+.. .|+.+.. |.--.|..|+.-+++.+.++
T Consensus 224 NyFkn~~qR~PriRfG~------------vHvyNNYy~~~~~~g~a~~i------G~~AkiyvE~NyF~~~~~~~ 280 (345)
T COG3866 224 NYFKNLYQRGPRIRFGM------------VHVYNNYYEGNPKFGVAITI------GTSAKIYVENNYFENGSEGL 280 (345)
T ss_pred cccccccccCCceEeeE------------EEEeccccccCcccceEEee------ccceEEEEecceeccCCCCc
Confidence 988763 22 56654 345566655432 3433321 12234556666665554443
No 62
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.013 Score=60.49 Aligned_cols=211 Identities=12% Similarity=0.128 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-.-||+||+++-... .--+|+|.+|+|.-..+.+... |.|++|.++|. ....|... .+
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~ni~l~G~g~------------~~TiIt~~--~~----- 342 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KTNLMFIGDGK------------GKTVITGG--KS----- 342 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-CceEEEEecCC------------CCeEEecC--Cc-----
Confidence 4678999999652221 2346899999998754555322 57888888762 01111100 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..++.+ ..+ ..-.....+++..++++|.|... ..+.+. .++...+.+|++...+ |
T Consensus 343 -~~~~~~-------------t~~-saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----D 402 (587)
T PLN02484 343 -IFDNLT-------------TFH-TASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----D 402 (587)
T ss_pred -ccCCCc-------------ccc-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----c
Confidence 001100 001 12233356888889999988643 344443 5788899999998865 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
-+.... .+-..++|+|...=|-| .|.-...++||.+..- .| .|=..+.. ....-..+.|.||.+....
T Consensus 403 TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~-~ITAq~r~-~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 403 TLYVHS-NRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKN-TITAQNRK-DPNQNTGISIHACRILAAS 476 (587)
T ss_pred ccccCC-CcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCce-EEEecCCC-CCCCCcEEEEEeeEEecCC
Confidence 454443 45688999998765543 3356888899988631 12 12111110 1223468889999998743
Q ss_pred ceE----EEEeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGV----RIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi----~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
.-. ..+.+-|..-..-..+.|.+..|.+.
T Consensus 477 ~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 477 DLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred ccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 210 11111111223456778888887654
No 63
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.55 E-value=0.012 Score=60.14 Aligned_cols=209 Identities=16% Similarity=0.152 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHhhcCC-CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSAK-ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~-g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-..||+||+++-.... --+|+|.+|+|.- .+.+... |.+++|.++|. ....|... .+
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~~-k~~i~l~G~g~------------~~TiIt~~--~~----- 305 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGKK-KKNLMLVGDGM------------DSTIITGS--LN----- 305 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecCC-CceEEEEecCC------------CCcEEEeC--Cc-----
Confidence 57789999987532221 2379999999974 3444322 57888888762 01111110 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..||.+ ..+ ..-.....+++..++++|+|... ..+.+. .++...+.+|+|...+ |
T Consensus 306 -~~dg~~-------------T~~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----D 365 (548)
T PLN02301 306 -VIDGST-------------TFR-SATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQ-----D 365 (548)
T ss_pred -cCCCCC-------------cee-eEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecc-----c
Confidence 011110 001 12233456889999999998643 334333 5788999999998865 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ce-eEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HG-VSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
-+...+ .+-..++|+|...=|-| .|.-...++||++..- .+ +.- .|.. +...-..+.|.||.+...
T Consensus 366 TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTA--qgr~-~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 366 TLYAHS-LRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNMVTA--QGRT-DPNQNTGISIQKCDIIAS 438 (548)
T ss_pred cceecC-CcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCceEEe--cCCC-CCCCCCEEEEEeeEEecC
Confidence 455544 34689999999865543 3356888999988531 12 222 1111 122346888999999875
Q ss_pred CceEE----EEeecCCCCceEEeEEEEeEEEecC
Q 037377 266 DNGVR----IKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 266 ~~gi~----i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..-.. .+.+=|..-..-..+.|.+..|.+.
T Consensus 439 ~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 439 SDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred ccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 32100 1111111123456677777777653
No 64
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.51 E-value=0.012 Score=60.60 Aligned_cols=209 Identities=13% Similarity=0.132 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHhhcC-----CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEE
Q 037377 39 STKPFLKAWASACRSA-----KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRL 113 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-----~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni 113 (387)
+-.-||+||+++ ... +--+|+|.+|+|.- .+.+... |.+++|+++|. ....|.... +
T Consensus 261 ~f~TIq~Av~a~-p~~~~~~~~~~vI~Ik~G~Y~E-~V~i~~~-k~~i~l~G~g~------------~~TiIt~~~--~- 322 (566)
T PLN02713 261 NFTTINDAVAAA-PNNTDGSNGYFVIYVTAGVYEE-YVSIPKN-KKYLMMIGDGI------------NQTVITGNR--S- 322 (566)
T ss_pred CCCCHHHHHHhh-hcccCCCCceEEEEEcCcEEEE-EEEecCC-CceEEEEecCC------------CCcEEEcCC--c-
Confidence 467899999865 322 11369999999973 3444222 56888888761 011111110 0
Q ss_pred EEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEe-eceeeEEEEeEEEECCCCC
Q 037377 114 SVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVI-NSCNNVNVRNVKVVAPDQS 188 (387)
Q Consensus 114 ~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~-~~~~nv~i~~~~i~~~~~~ 188 (387)
..||-+ ..+...+. ...+++..++++|.|... ..+.+ ..++...+.+|+|...+
T Consensus 323 -----~~~g~~-------------T~~SaT~~-v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-- 381 (566)
T PLN02713 323 -----VVDGWT-------------TFNSATFA-VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-- 381 (566)
T ss_pred -----ccCCCc-------------cccceeEE-EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC--
Confidence 011100 00112233 356899999999999632 33433 36788999999998865
Q ss_pred CCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEE
Q 037377 189 PNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVF 262 (387)
Q Consensus 189 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~ 262 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||.+..- .+ .|=..+.. ....-..+.|.||.+
T Consensus 382 ---DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~-~iTAq~r~-~~~~~~G~vf~~c~i 452 (566)
T PLN02713 382 ---DTLYTHS-LRQFYRECDIYGTVDFI---FGNAAVVFQNCNLYPRLPMQGQFN-TITAQGRT-DPNQNTGTSIQNCTI 452 (566)
T ss_pred ---cceEECC-CCEEEEeeEEeccccee---cccceEEEeccEEEEecCCCCCcc-eeeecCCC-CCCCCCEEEEEcCEE
Confidence 4565554 45789999998765543 3356889999998532 12 12111110 122346889999999
Q ss_pred eCCCceE----EEEeecCCCCceEEeEEEEeEEEecC
Q 037377 263 TGSDNGV----RIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 263 ~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
....... ..+.+=|..-..-..+.|.+..|.+.
T Consensus 453 ~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 453 KAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred ecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 8753210 01111011122356778888888764
No 65
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.49 E-value=0.011 Score=60.29 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
+-.-||+||+++-... +--+|+|.+|+|.-. +.+... |.+++|.++|. ....|... .+. ..|
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~~-k~~i~l~G~g~------------~~tiIt~~--~~~-~~g 305 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKKK-KTNIMLVGDGI------------GQTVVTGN--RNF-MQG 305 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccCC-CceEEEEEcCC------------CCeEEEeC--ccc-cCC
Confidence 4678999998652222 234799999999643 223211 57888877762 01111111 000 001
Q ss_pred -eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCC
Q 037377 118 -GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNT 191 (387)
Q Consensus 118 -G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 191 (387)
++ .+. .-.....+++..++++|.|... ..+.+. .++.+.+.+|++...+
T Consensus 306 ~~T-------------------~~s-aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~Q----- 360 (537)
T PLN02506 306 WTT-------------------FRT-ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQ----- 360 (537)
T ss_pred CCc-------------------ccc-eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccc-----
Confidence 11 111 2234467899999999998742 233332 5778888888888765
Q ss_pred CceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-----ceeEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 192 DGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-----HGVSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 192 DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||.+..- ..-.|=..|+. ....-..+.|.||++....
T Consensus 361 DTLy~~~-~rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~ 435 (537)
T PLN02506 361 DTLYAHS-LRQFYRECEIYGTIDFI---FGNGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLATQ 435 (537)
T ss_pred ccceecC-CceEEEeeEEecccceE---ccCceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEEccCC
Confidence 4454443 34688888888765543 2345788888888631 11122111111 1123357888888887642
Q ss_pred ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
...+. ..-..-..+.|-+..|.+.
T Consensus 436 -~~yLG----RPW~~~sr~v~~~t~l~~~ 459 (537)
T PLN02506 436 -PTYLG----RPWKQYSRTVFMNTYMSQL 459 (537)
T ss_pred -ceEEe----cCCCCCceEEEEecCCCCe
Confidence 23332 1123356677777777653
No 66
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.47 E-value=0.018 Score=59.60 Aligned_cols=211 Identities=13% Similarity=0.138 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-..||+||+++-... +--+|+|.+|+|.-. +.+... |.|++|.++|. ....|... .+
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~ni~l~Gdg~------------~~TiIt~~--~~----- 344 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTKK-KKNIMFLGDGR------------GKTIITGS--RN----- 344 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCCC-CCeEEEEecCC------------CccEEEeC--Cc-----
Confidence 5678999998652222 123799999999743 333222 56888888762 01112110 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..||.. ..+... .....+++..++++|+|... ..+.+. .++...+.+|+|...+ |
T Consensus 345 -~~~g~~-------------t~~sat-~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----D 404 (587)
T PLN02313 345 -VVDGST-------------TFHSAT-VAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----D 404 (587)
T ss_pred -ccCCCC-------------ceeeEE-EEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----c
Confidence 011110 001122 23356888899999998643 334333 5788889999998765 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCCc
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSDN 267 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~~ 267 (387)
-+...+ .+-..++|.|...=|-| .|.-...++||.+..- .| -.|-..|.. +...-..+.|.||.+.....
T Consensus 405 TLy~~~-~rq~y~~c~I~GtvDFI---FG~a~avfq~c~i~~r~~~~~~~~~iTAqgr~-~~~~~tG~v~~~c~i~~~~~ 479 (587)
T PLN02313 405 TLYVHS-NRQFFVKCHITGTVDFI---FGNAAAVLQDCDINARRPNSGQKNMVTAQGRS-DPNQNTGIVIQNCRIGGTSD 479 (587)
T ss_pred hhccCC-CcEEEEeeEEeecccee---ccceeEEEEccEEEEecCCCCCcceEEecCCC-CCCCCceEEEEecEEecCCc
Confidence 455444 34588889998765644 2356888888888631 11 122111211 12234678889998877532
Q ss_pred eEE----EEeecCCCCceEEeEEEEeEEEecC
Q 037377 268 GVR----IKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 268 gi~----i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-.. .+.+-|..-..-+.+.|-+..|.+.
T Consensus 480 ~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~ 511 (587)
T PLN02313 480 LLAVKGTFPTYLGRPWKEYSRTVIMQSDISDV 511 (587)
T ss_pred cccccccchhhccCCCCCCccEEEEecccCCe
Confidence 111 1111111112345566777666653
No 67
>PLN02314 pectinesterase
Probab=97.47 E-value=0.021 Score=59.19 Aligned_cols=209 Identities=14% Similarity=0.134 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-.-||+||+++-... .--+|+|.+|+|.- .+.+... |.|++|+++|. ....|... .+
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k~~i~l~G~g~------------~~tiIt~~--~~----- 347 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDKS-KWNVMIYGDGK------------DKTIISGS--LN----- 347 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecCC-CceEEEEecCC------------CCcEEEec--CC-----
Confidence 5678999998652221 12369999999974 3444322 56888888862 01111110 00
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
..||.. . .+... .....+++..++++|.|... ..+.+. .++...+.+|++...+ |
T Consensus 348 -~~~g~~-t------------~~saT-~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----D 407 (586)
T PLN02314 348 -FVDGTP-T------------FSTAT-FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----D 407 (586)
T ss_pred -cCCCCC-c------------cceEE-EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----c
Confidence 011110 0 01122 23356888999999998743 334433 5778889999998865 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
-+...+ ..-..++|+|...=|-| .|.-...++||.+..- .+ .|-..+.. +...-..+.|.||.+.+..
T Consensus 408 TLy~~~-~rq~y~~C~I~GtvDFI---FG~a~avf~~c~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 408 TLYAHS-NRQFYRDCDITGTIDFI---FGNAAVVFQNCNIQPRQPLPNQFN-TITAQGKK-DPNQNTGISIQRCTISAFG 481 (586)
T ss_pred hheeCC-CCEEEEeeEEEecccee---ccCceeeeeccEEEEecCCCCCCc-eEecCCCC-CCCCCCEEEEEeeEEecCC
Confidence 455544 35688899998865543 3346888999988631 12 22111111 1233467889999998863
Q ss_pred ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
. +..+.+-|..-..-..+.|.+..|.+.
T Consensus 482 ~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 482 N-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred c-ccccccccCCCCCCceEEEEecccCCc
Confidence 2 111111111122355677888777764
No 68
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.44 E-value=0.034 Score=55.93 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=114.5
Q ss_pred cCHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 38 DSTKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
-+-.-||+||+++-... .--+|+|.+|+|.- .+.+... |.+++|.++|. ....|.... +. ..
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~nItliGdg~------------~~TiIt~n~--~~-~~ 269 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGST-KPNLTLIGDGQ------------DSTIITGNL--SA-SN 269 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecCC-CccEEEEecCC------------CceEEEEcc--cc-cC
Confidence 45678999998652221 22479999999974 3444211 57888888861 011111110 00 00
Q ss_pred c-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCC
Q 037377 117 G-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPN 190 (387)
Q Consensus 117 G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n 190 (387)
| ++. + ..-.....+++..++++|+|... ..+.+. .++...+.+|+|...+
T Consensus 270 g~~T~-------------------~-SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ---- 325 (509)
T PLN02488 270 GKRTF-------------------Y-TATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ---- 325 (509)
T ss_pred CCCce-------------------e-eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC----
Confidence 1 110 1 11223346788888888888642 334433 5688888899988765
Q ss_pred CCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEEeC
Q 037377 191 TDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVFTG 264 (387)
Q Consensus 191 ~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~~~ 264 (387)
|-+...+ .+-..++|+|...=|-| .|.-...++||.+..- .+ .|=..+.. ....-..+.|.||.+..
T Consensus 326 -DTLy~~~-~RqyyrdC~I~GtVDFI---FG~a~avFq~C~I~sr~~~~~~~~-~ITAq~R~-~~~~~tGfvf~~C~it~ 398 (509)
T PLN02488 326 -DALYPHR-DRQFYRECFITGTVDFI---CGNAAAVFQFCQIVARQPMMGQSN-VITAQSRE-SKDDNSGFSIQKCNITA 398 (509)
T ss_pred -cceeeCC-CCEEEEeeEEeeccceE---ecceEEEEEccEEEEecCCCCCCE-EEEeCCCC-CCCCCcEEEEEeeEEec
Confidence 4455443 45788888888765543 2356788888888631 12 22111111 12234578888888887
Q ss_pred CCceEE----EEeecCCCCceEEeEEEEeEEEec
Q 037377 265 SDNGVR----IKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 265 ~~~gi~----i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
...... .+.+=|..-..-+.+.|-+..|.+
T Consensus 399 ~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 399 SSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred CCcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 532110 111111112234566777776665
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.42 E-value=0.029 Score=57.85 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHhhcCC--CcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEE
Q 037377 39 STKPFLKAWASACRSAK--ASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVI 116 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~~--g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~ 116 (387)
+-.-||+||+++ .+.. --+|+|.+|+|.- .+.+... |.+++|.++|. ....|... .+..
T Consensus 270 ~f~TIq~Av~a~-p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~~i~l~G~g~------------~~TiIt~~--~~~~-- 330 (572)
T PLN02990 270 QYKTINEALNAV-PKANQKPFVIYIKQGVYNE-KVDVTKK-MTHVTFIGDGP------------TKTKITGS--LNFY-- 330 (572)
T ss_pred CCcCHHHHHhhC-cccCCceEEEEEeCceeEE-EEEecCC-CCcEEEEecCC------------CceEEEec--cccC--
Confidence 467899999965 3322 2479999999974 3444222 57889988862 01112111 1100
Q ss_pred ceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCC
Q 037377 117 GGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNT 191 (387)
Q Consensus 117 GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~ 191 (387)
+|. | ...+...+ ....+++..++++|.|... ..+.+. .++...+.+|+|...+
T Consensus 331 ~g~--------~--------~T~~saT~-~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q----- 388 (572)
T PLN02990 331 IGK--------V--------KTYLTATV-AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ----- 388 (572)
T ss_pred CCC--------c--------cceeeeEE-EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----
Confidence 000 0 00011122 3356888999999998743 334433 5788999999998765
Q ss_pred CceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC---ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCC
Q 037377 192 DGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG---HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSD 266 (387)
Q Consensus 192 DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~ 266 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||++..- .| -.|=..+.. ....-..+.|.||++.+..
T Consensus 389 DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 389 DTLYVHS-HRQFFRDCTVSGTVDFI---FGDAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCHITGEP 463 (572)
T ss_pred chhccCC-CcEEEEeeEEecccceE---ccCceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeEEecCc
Confidence 4455443 45678999998865644 2345788899988631 11 122111111 1223457889999998853
Q ss_pred ceEEE----EeecCCCCceEEeEEEEeEEEecC
Q 037377 267 NGVRI----KSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 267 ~gi~i----~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
..... +.+=|..-..-..+.|.+..|.+.
T Consensus 464 ~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 464 AYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDV 496 (572)
T ss_pred cccccccccceEeecCCCCCceEEEEecccCCe
Confidence 21111 111011123356778888887654
No 70
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.40 E-value=0.03 Score=58.43 Aligned_cols=211 Identities=11% Similarity=0.076 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHhhcC-CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEEEEc
Q 037377 39 STKPFLKAWASACRSA-KASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLSVIG 117 (387)
Q Consensus 39 dt~aiq~Ai~~ac~~~-~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~I~G 117 (387)
|-.-||+||+++-... .--+|+|.+|+|.-. +.+... |.+++|.++|.- ...|... .+.
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~~i~l~Gdg~~------------~TiIt~~--~~~---- 320 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKEY-VQVNRS-MTHLVFIGDGPD------------KTVISGS--KSY---- 320 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEEE-EEEcCC-CCcEEEEecCCC------------CeEEEcC--Ccc----
Confidence 5778999998652211 224699999999643 444322 567888777610 1111110 000
Q ss_pred eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCC
Q 037377 118 GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTD 192 (387)
Q Consensus 118 G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~D 192 (387)
-||.+ ..+...+ ....+++..++++|.|... ..+.+. .++...+.+|+|...+ |
T Consensus 321 --~dg~~-------------T~~SAT~-~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----D 379 (670)
T PLN02217 321 --KDGIT-------------TYKTATV-AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----D 379 (670)
T ss_pred --CCCCC-------------ccceEEE-EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----c
Confidence 01100 0011223 3356889999999998743 344443 5789999999999765 4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC-----ceeEEeecCCCCCCCCeEEEEEEeeEEeCCCc
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG-----HGVSIGSLGKDFNEDGVQNITLLNAVFTGSDN 267 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~ 267 (387)
-+.... .+-.+++|+|...=|-| .|.-...++||.+..- ..-.|-..|.. ....-..+.|.||++.+...
T Consensus 380 TLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~~ 454 (670)
T PLN02217 380 TLYAHS-HRQFYRDCTISGTIDFL---FGDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEPD 454 (670)
T ss_pred hhccCC-CcEEEEeCEEEEeccEE---ecCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCcc
Confidence 455444 45789999999865543 2345789999998632 11122112211 12334689999999988632
Q ss_pred eEE----EEeecCCCCceEEeEEEEeEEEecC
Q 037377 268 GVR----IKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 268 gi~----i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-.. .+.+-|..-.....+.|.+..|.+.
T Consensus 455 ~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 455 YLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred ccccccccceeeccCCCCCceEEEEecccCCe
Confidence 111 0111111223457788888888764
No 71
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0087 Score=56.31 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCceEEEEEeeccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEE
Q 037377 138 PAGASSITFNWANNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCIS 217 (387)
Q Consensus 138 ~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~ 217 (387)
..|...|.++++++..|.+-.+.- ...+|..+.+++..+++.++.... -|.|.+.+.+..++++..+...-+.+
T Consensus 147 ~~rGnGI~vyNa~~a~V~~ndisy-~rDgIy~~~S~~~~~~gnr~~~~R-----ygvHyM~t~~s~i~dn~s~~N~vG~A 220 (408)
T COG3420 147 AERGNGIYVYNAPGALVVGNDISY-GRDGIYSDTSQHNVFKGNRFRDLR-----YGVHYMYTNDSRISDNSSRDNRVGYA 220 (408)
T ss_pred hhccCceEEEcCCCcEEEcCcccc-ccceEEEcccccceecccchhhee-----eeEEEEeccCcEeecccccCCcceEE
Confidence 345566777777777776665532 235666666666666666665432 46677777777777777666666666
Q ss_pred eCCCceeEEEEeeEEeCC--ceeEE
Q 037377 218 IGPGTRNLFMNNIKCGPG--HGVSI 240 (387)
Q Consensus 218 ~~~~s~ni~i~n~~~~~~--~gi~i 240 (387)
+-. ++.++|+|+.-++. ||+-+
T Consensus 221 LMy-s~~l~V~~nrS~Gnrd~Gill 244 (408)
T COG3420 221 LMY-SDRLKVSDNRSSGNRDHGILL 244 (408)
T ss_pred EEE-eccEEEEcCcccCccccceee
Confidence 665 67777777776543 45443
No 72
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.36 E-value=0.035 Score=56.84 Aligned_cols=213 Identities=16% Similarity=0.123 Sum_probs=119.5
Q ss_pred cCHHHHHHHHHHHhhc---CCCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEEEecCCccccCCCceEEEEEeeeEEE
Q 037377 38 DSTKPFLKAWASACRS---AKASTIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTIVAPTNYWALGNSGYWILFIKIDRLS 114 (387)
Q Consensus 38 ddt~aiq~Ai~~ac~~---~~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~ni~ 114 (387)
-|-.-||+||+++-.. .+--+|+|.+|+|.-. +.+... |.+++|.++|. ....|... .+.
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~~i~l~G~g~------------~~TvIt~~--~~~- 295 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-NDDIMLVGDGM------------RSTIITGG--RSV- 295 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CCcEEEEEcCC------------CCeEEEeC--Ccc-
Confidence 3577899999965221 1235689999999754 333211 57899988872 01111110 000
Q ss_pred EEc-eEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCC
Q 037377 115 VIG-GTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQS 188 (387)
Q Consensus 115 I~G-G~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~ 188 (387)
-.| ++. +...+ ....+++..++++|.|... ..+.+. .++...+.+|+|...+
T Consensus 296 ~~~~~T~-------------------~SaT~-~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~Q-- 353 (539)
T PLN02995 296 KGGYTTY-------------------NSATA-GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQ-- 353 (539)
T ss_pred CCCCccc-------------------ceEEE-EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEeccc--
Confidence 001 110 11122 3356888889999988643 334433 5788999999998865
Q ss_pred CCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC------ceeEEeecCCCCCCCCeEEEEEEeeEE
Q 037377 189 PNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG------HGVSIGSLGKDFNEDGVQNITLLNAVF 262 (387)
Q Consensus 189 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~------~gi~igs~g~~~~~~~i~ni~i~n~~~ 262 (387)
|-+.... .+-..++|+|...=|-| .|.-...++||++..- .| .|=..++. ....-..+.|.||++
T Consensus 354 ---DTLy~~~-~Rqyy~~C~I~GtVDFI---FG~a~avf~~C~i~~~~~~~~~~~-~iTA~~r~-~~~~~~G~vf~~c~i 424 (539)
T PLN02995 354 ---DTLMVHS-QRQFYRECYIYGTVDFI---FGNAAAVFQNCIILPRRPLKGQAN-VITAQGRA-DPFQNTGISIHNSRI 424 (539)
T ss_pred ---chhccCC-CceEEEeeEEeeccceE---ecccceEEeccEEEEecCCCCCcc-eEecCCCC-CCCCCceEEEEeeEE
Confidence 4444443 35688999998865543 2345788899988632 12 12111111 122346888999999
Q ss_pred eCCCceE----EEEeecCCCCceEEeEEEEeEEEecCCcc
Q 037377 263 TGSDNGV----RIKSWARPSNSFVRNVLFQNLIMNNVQNP 298 (387)
Q Consensus 263 ~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~i~~~~~~ 298 (387)
.+..... ..+.+-|..-..-..+.|.+..|.+.=.|
T Consensus 425 ~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p 464 (539)
T PLN02995 425 LPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSP 464 (539)
T ss_pred ecCCcccccccccceeccCCCCCCcceEEEeccccCcccc
Confidence 8853211 01111111223455688888888664333
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.30 E-value=0.007 Score=54.12 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=72.3
Q ss_pred EeeccEEEEeeEEecC---------------ccceeEeeceeeEEEEeEEEECCCC---CCCCCc-eeee-ccccEEEEc
Q 037377 147 NWANNILISGLTSINS---------------QQTHLVINSCNNVNVRNVKVVAPDQ---SPNTDG-IHVQ-ASTGVTITG 206 (387)
Q Consensus 147 ~~~~nv~i~~v~i~n~---------------~~~~i~~~~~~nv~i~~~~i~~~~~---~~n~DG-i~~~-~s~nv~I~n 206 (387)
..++||.|+++++.+. ....+.+..+++|.|+++++..... ....|| +++. .+++|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4889999999999872 4467888999999999999987611 111466 6775 479999999
Q ss_pred eEEecCCceEEeCCC-------ceeEEEEeeEEeCCce--eEEeecCCCCCCCCeEEEEEEeeEEeC-CCceEEEE
Q 037377 207 VTLKTGDDCISIGPG-------TRNLFMNNIKCGPGHG--VSIGSLGKDFNEDGVQNITLLNAVFTG-SDNGVRIK 272 (387)
Q Consensus 207 ~~i~~gdD~i~~~~~-------s~ni~i~n~~~~~~~g--i~igs~g~~~~~~~i~ni~i~n~~~~~-~~~gi~i~ 272 (387)
|.|...+.+..+.+. ..++++.+|.+.+..+ -.+. .-.+.+-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r----------~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVR----------FGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEEC----------SCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCccc----------ccEEEEEEeeeECCCCEEEEcc
Confidence 999875443333321 2689999999864322 1221 1246677776654 44666554
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.95 E-value=0.00074 Score=46.91 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=22.6
Q ss_pred ccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCC-EEEEEEEE
Q 037377 31 AKPDGRTDSTKPFLKAWASACRSAKASTIYVPKG-RYLIKAAE 72 (387)
Q Consensus 31 A~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G-~Y~~~~l~ 72 (387)
|+|||+||||+||.+||+++ +.| .++=-.| ||++++|.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g-~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVG-RKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TT-S-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc---CCC-eEEecCCceEEEeeCc
Confidence 78999999999999999753 334 4444555 69887653
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.95 E-value=0.21 Score=48.49 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=90.5
Q ss_pred EEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCC-EEEEE-EEEeeCCCCCcEEEEEee-EEEecCCccccCCC
Q 037377 25 NVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKG-RYLIK-AAEFRGPCRNRVTLQIDG-TIVAPTNYWALGNS 101 (387)
Q Consensus 25 ~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G-~Y~~~-~l~l~~~~ks~v~l~~~G-~l~~~~~~~~~~~~ 101 (387)
.|+.|=..|+ +-+.+||+.- .+|.+-|| +|.+. ++.+ ++-+.+.+.| +++..... .
T Consensus 45 qvkt~~~~P~------eDle~~I~~h------aKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA~V~v~~~~-----~ 103 (386)
T PF01696_consen 45 QVKTYWMEPG------EDLEEAIRQH------AKVALRPGAVYVIRKPVNI----RSCCYIIGNGATVRVNGPD-----R 103 (386)
T ss_pred eEEEEEcCCC------cCHHHHHHhc------CEEEeCCCCEEEEeeeEEe----cceEEEECCCEEEEEeCCC-----C
Confidence 5666766665 2466777642 35888777 59985 5877 4668887777 44331100 0
Q ss_pred ceEEEEEeeeEEEEEceEEeCCCCceecccCCCCCCCCCceEEEEEeeccEEEEeeEEecCc-cceeEeeceeeEEEEeE
Q 037377 102 GYWILFIKIDRLSVIGGTFDGKGAGFWACRKSGKNCPAGASSITFNWANNILISGLTSINSQ-QTHLVINSCNNVNVRNV 180 (387)
Q Consensus 102 ~~~i~~~~~~ni~I~GG~idg~g~~~~~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~-~~~i~~~~~~nv~i~~~ 180 (387)
.. |.... ....|. +..-.++++.++.+...+ .-++-+....++.+.++
T Consensus 104 ~~-f~v~~---------------------------~~~~P~---V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC 152 (386)
T PF01696_consen 104 VA-FRVCM---------------------------QSMGPG---VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGC 152 (386)
T ss_pred ce-EEEEc---------------------------CCCCCe---EeeeeeeEEEEEEEecCCccceeEEEecceEEEEee
Confidence 00 11110 011232 223356777777777665 55666677778888888
Q ss_pred EEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCc-ee
Q 037377 181 KVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGH-GV 238 (387)
Q Consensus 181 ~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~-gi 238 (387)
.+.+.. |.-++.-....|++|+|.+.--++.-++ ...+.|++|+|.... |+
T Consensus 153 ~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi~~~~-~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 153 SFFGFH------GTCLESWAGGEVRGCTFYGCWKGIVSRG-KSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred EEecCc------ceeEEEcCCcEEeeeEEEEEEEEeecCC-cceEEeeheeeeheEEEE
Confidence 887643 3344444567788888876544443332 457777788776553 44
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.41 E-value=0.37 Score=43.19 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred ccEEEEeeEEecCccceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccc-cEEEEceEEecCCceEEeCCCceeEEEE
Q 037377 150 NNILISGLTSINSQQTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQAST-GVTITGVTLKTGDDCISIGPGTRNLFMN 228 (387)
Q Consensus 150 ~nv~i~~v~i~n~~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~~~~~s~ni~i~ 228 (387)
+..+|+++.|-.+...+||... +.+|+|+....-.. |.+.+.+.. .++|.+.-.+..+|-|-=..+.-.++|+
T Consensus 61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVcE----DA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~ 134 (215)
T PF03211_consen 61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVCE----DAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK 134 (215)
T ss_dssp TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-SS----ESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccce----eeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence 5667777777555556666665 55666666554332 555555544 5566666666555554444444456666
Q ss_pred eeEE
Q 037377 229 NIKC 232 (387)
Q Consensus 229 n~~~ 232 (387)
|.+.
T Consensus 135 nF~a 138 (215)
T PF03211_consen 135 NFYA 138 (215)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6443
No 77
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.053 Score=50.88 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=70.4
Q ss_pred eeccEEEEeeEEecCccce--------e-EeeceeeEEEEeEEEECCCCCCCCCceeeecc-----------ccEEEEce
Q 037377 148 WANNILISGLTSINSQQTH--------L-VINSCNNVNVRNVKVVAPDQSPNTDGIHVQAS-----------TGVTITGV 207 (387)
Q Consensus 148 ~~~nv~i~~v~i~n~~~~~--------i-~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s-----------~nv~I~n~ 207 (387)
.-+++..+++++.|....+ + .....+.+.++++++....+ -+....+ -+-.++||
T Consensus 187 ~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Qd-----TlFv~~~~~~~~~~tn~~~R~yftNs 261 (405)
T COG4677 187 QNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQD-----TLFVGNSGVQNRLETNRQPRTYFTNS 261 (405)
T ss_pred ecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccc-----eEEecCCCCccccccCcchhhheecc
Confidence 3455666666666643332 1 22466788888888887542 2222211 14567888
Q ss_pred EEecCCceEEeCCCceeEEEEeeEEeC--C----ceeEEeecCCCCCCCCeEEEEEEeeEEeCCCc--eEEEEeecCCCC
Q 037377 208 TLKTGDDCISIGPGTRNLFMNNIKCGP--G----HGVSIGSLGKDFNEDGVQNITLLNAVFTGSDN--GVRIKSWARPSN 279 (387)
Q Consensus 208 ~i~~gdD~i~~~~~s~ni~i~n~~~~~--~----~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~--gi~i~~~~~~~~ 279 (387)
+|+..-|-| .|+--.++.+|.+.. . .|.-.--.. ..+.--...+-|+.+..... -+.+.--+....
T Consensus 262 yI~GdvDfI---fGsgtaVFd~c~i~~~d~r~~~~gYIfApST---~~~~~YGflalNsrfna~g~~~s~~LGRpwd~~a 335 (405)
T COG4677 262 YIEGDVDFI---FGSGTAVFDNCEIQVVDSRTQQEGYIFAPST---LSGIPYGFLALNSRFNASGDAGSAQLGRPWDVDA 335 (405)
T ss_pred eecccceEE---eccceEEeccceEEEeccCCCcceeEeccCC---CCCCceeEEEEeeeeecCCCCCeeeecCcccccc
Confidence 888654433 334567777777642 1 232221111 22334566777777766533 233321112223
Q ss_pred ceEEeEEEEeEEEe
Q 037377 280 SFVRNVLFQNLIMN 293 (387)
Q Consensus 280 g~v~nI~~~ni~i~ 293 (387)
.....+.|+|..|.
T Consensus 336 ~~nGQvVirds~m~ 349 (405)
T COG4677 336 NTNGQVVIRDSVMG 349 (405)
T ss_pred ccCceEEEEecccc
Confidence 34555777777764
No 78
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=96.13 E-value=0.34 Score=44.85 Aligned_cols=120 Identities=20% Similarity=0.321 Sum_probs=60.4
Q ss_pred ccEEEEeeEEecCccceeEee----ceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeE
Q 037377 150 NNILISGLTSINSQQTHLVIN----SCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNL 225 (387)
Q Consensus 150 ~nv~i~~v~i~n~~~~~i~~~----~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni 225 (387)
+|++|+++++..+.+ +|.-+ .-+++.|.|+++..- .+|.|.+. |-|.+-.+.- .+=
T Consensus 151 rnl~id~itv~~any-ailrqgfhnq~dgaritn~rfs~l----qgdaiewn----vaindr~ili-----------sdh 210 (464)
T PRK10123 151 RNLTIDNLTVSHANY-AILRQGFHNQIIGANITNCKFSDL----QGDAIEWN----VAINDRDILI-----------SDH 210 (464)
T ss_pred hccEEccEEEeeccH-HHHhhhhhhccccceeeccccccc----cCceEEEE----EEecccceee-----------ehh
Confidence 678888888866532 22111 223444555555432 24666552 2232222111 122
Q ss_pred EEEeeEEeCC---ceeEEeecCCC-----CCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEE
Q 037377 226 FMNNIKCGPG---HGVSIGSLGKD-----FNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIM 292 (387)
Q Consensus 226 ~i~n~~~~~~---~gi~igs~g~~-----~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i 292 (387)
+|++..|.++ +|+.||-.|.. ++...++|..+.|++-.+++.-+.+.. +.--.|+||.-+||+=
T Consensus 211 vie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven---gkhfvirnvkaknitp 282 (464)
T PRK10123 211 VIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN---GKHFVIRNIKAKNITP 282 (464)
T ss_pred eheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC---CcEEEEEeeeccccCC
Confidence 3444555544 57888766542 334457788888887666654444431 1223455665555554
No 79
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.85 E-value=0.38 Score=43.12 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=79.6
Q ss_pred eeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEec-CCceEEeCCCceeEEEEeeEEeCCce--eEEeecCCCCCC
Q 037377 173 NNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKT-GDDCISIGPGTRNLFMNNIKCGPGHG--VSIGSLGKDFNE 249 (387)
Q Consensus 173 ~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~~~~~s~ni~i~n~~~~~~~g--i~igs~g~~~~~ 249 (387)
+..+++|+.|-.+. .||||..+ +-+|+|+.+.. +.|+++++..+..++|.+.-..++.+ +..-..
T Consensus 61 ~GatlkNvIiG~~~----~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~------ 128 (215)
T PF03211_consen 61 DGATLKNVIIGANQ----ADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGG------ 128 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SS------
T ss_pred CCCEEEEEEEcCCC----cCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecCc------
Confidence 36788999885443 49999998 77899999975 89999999965577777776665544 444221
Q ss_pred CCeEEEEEEeeEEeCCCceEEEEeecCC--CCceEEeEEEEeEEEecCCccEEEEeecCCCCCCCCCCCCceEEEeEEEE
Q 037377 250 DGVQNITLLNAVFTGSDNGVRIKSWARP--SNSFVRNVLFQNLIMNNVQNPIIVDQNYCPNNQGCPRQSSGVKISQVTYR 327 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~gi~i~~~~~~--~~g~v~nI~~~ni~i~~~~~~i~I~~~~~~~~~~~~~~~~~~~i~nIt~~ 327 (387)
-.++|+|-+..+ .|--..+-.+. .++.=|.|.+++........-.-|...|. ...+|++++++
T Consensus 129 ---Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g----------D~ati~~~~~~ 193 (215)
T PF03211_consen 129 ---GTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG----------DTATISNSCIK 193 (215)
T ss_dssp ---EEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT----------TTEEEEEEEEE
T ss_pred ---eeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC----------CeEEEEEEEec
Confidence 357777755554 44444443111 11344667777766544333345666665 34678888777
Q ss_pred e
Q 037377 328 N 328 (387)
Q Consensus 328 n 328 (387)
.
T Consensus 194 ~ 194 (215)
T PF03211_consen 194 G 194 (215)
T ss_dssp E
T ss_pred C
Confidence 6
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.73 E-value=0.11 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=21.4
Q ss_pred ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEE
Q 037377 193 GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKC 232 (387)
Q Consensus 193 Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~ 232 (387)
||.++.+.+.+|+++.+....|+|.+.. +.+.+++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 4555555555566666665555665555 34444555544
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.35 E-value=15 Score=35.92 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=61.0
Q ss_pred eeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecC-CceEEeCCCceeEEEEeeEEeCCc-eeEEeecCCC
Q 037377 169 INSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTG-DDCISIGPGTRNLFMNNIKCGPGH-GVSIGSLGKD 246 (387)
Q Consensus 169 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g-dD~i~~~~~s~ni~i~n~~~~~~~-gi~igs~g~~ 246 (387)
+.+=.+|++.|+++...+. -.|+-+.+..++++.+|.|.+- --|+... ....|++|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~~---~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDT---FSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCCc---cceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec------
Confidence 3445689999999987641 2578888889999999999873 3444333 47889999997653 4432
Q ss_pred CCCCCeEEEEEEeeEEeCCCceE
Q 037377 247 FNEDGVQNITLLNAVFTGSDNGV 269 (387)
Q Consensus 247 ~~~~~i~ni~i~n~~~~~~~~gi 269 (387)
.+...+.|++|.|....-|+
T Consensus 185 ---~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CCcceEEeeheeeeheEEEE
Confidence 23467788888888876666
No 82
>PLN02480 Probable pectinesterase
Probab=91.26 E-value=4.5 Score=39.19 Aligned_cols=111 Identities=6% Similarity=0.028 Sum_probs=74.4
Q ss_pred ceeeEEEEeEEEECCCC-----CCCCCceee-eccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecC
Q 037377 171 SCNNVNVRNVKVVAPDQ-----SPNTDGIHV-QASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLG 244 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~-----~~n~DGi~~-~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g 244 (387)
..++++++|++|.+... .....++-+ ..++++.+.||.+.+..|-+-... ..-.++||++.+.-++-+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999998631 111234555 346899999999999888776544 35778999998776777765
Q ss_pred CCCCCCCeEEEEEEeeEEeCCC------ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 245 KDFNEDGVQNITLLNAVFTGSD------NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 245 ~~~~~~~i~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... .|. |..... ....-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcCCC-CCCCCCEEEEECCEEccc
Confidence 45679999987542 232 333221 112234577999999763
No 83
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=90.85 E-value=10 Score=34.97 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=57.4
Q ss_pred eEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCC--ceeEEeecC
Q 037377 167 LVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPG--HGVSIGSLG 244 (387)
Q Consensus 167 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~--~gi~igs~g 244 (387)
+.+....+.+|++++|.++.. ...-|+.+.++ +.+ |+||+|.+. +|+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~t-----------------------I~Nntf~~~~~~GI~v~g~~ 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPT-----------------------IANNTFTNNGREGIFVTGTS 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcE-----------------------EEeeEEECCccccEEEEeee
Confidence 344445677888888887621 12234555443 444 444444432 344431110
Q ss_pred CCCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCCccEEEE
Q 037377 245 KDFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQNPIIVD 302 (387)
Q Consensus 245 ~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~~~i~I~ 302 (387)
....+.+++|++..+.....|+.+.... .+ +.| .++|..+++...+|.+.
T Consensus 146 ---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~---~~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 146 ---ANPGINGNVISGNSIYFNKTGISISDNA---AP-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred ---cCCcccceEeecceEEecCcCeEEEccc---CC-ccc-eeeccEEEeCCcCeEee
Confidence 1345677788888888877888886432 22 333 34666776655576654
No 84
>PLN02665 pectinesterase family protein
Probab=90.39 E-value=5.7 Score=38.82 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=74.5
Q ss_pred eceeeEEEEeEEEECCCCC-----C--CCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEee
Q 037377 170 NSCNNVNVRNVKVVAPDQS-----P--NTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGS 242 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~-----~--n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs 242 (387)
..++++..+|++|.+.... . ..-.+.+. .+...+.||.+.+..|-+.... ..-.++||++.+.-++-+|.
T Consensus 151 v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 151 VESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc
Confidence 4578899999999886421 1 11223333 4889999999999888876554 35678999998877777766
Q ss_pred cCCCCCCCCeEEEEEEeeEEeCCCce--EEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 243 LGKDFNEDGVQNITLLNAVFTGSDNG--VRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 243 ~g~~~~~~~i~ni~i~n~~~~~~~~g--i~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||++.....+ -.|....+.....-....|.|+++....
T Consensus 228 ----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 228 ----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred ----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 2446888888764333 2333221111122335679999998754
No 85
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.13 E-value=0.58 Score=30.53 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.4
Q ss_pred eEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEec
Q 037377 167 LVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKT 211 (387)
Q Consensus 167 i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~ 211 (387)
|.+..+.+.+|++.++... .|||++..+.+-+|+++.+..
T Consensus 2 I~l~~s~~~~i~~N~i~~~-----~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNN-----SYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCC-----CCEEEEEeCCCCEeECCEEEc
Confidence 5566677777888888654 378888888888888877764
No 86
>PLN02916 pectinesterase family protein
Probab=89.64 E-value=6.4 Score=40.07 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=75.6
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|....|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD------- 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC-------
Confidence 456888999999886432222333332 35889999999999989877665 24578999998877777776
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.... ..-.|....+.....-..+.|.|+++....
T Consensus 346 ---a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 ---AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ---ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 46678999886532 122343221112233456789999998643
No 87
>PLN02682 pectinesterase family protein
Probab=88.91 E-value=7.8 Score=37.89 Aligned_cols=112 Identities=8% Similarity=0.040 Sum_probs=73.6
Q ss_pred ceeeEEEEeEEEECCCCC-----CCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecC
Q 037377 171 SCNNVNVRNVKVVAPDQS-----PNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLG 244 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g 244 (387)
..+++..+|++|.+.... .....+-+. ..++..+.||.+.+..|-+..+. ..-.++||++.+.-++-+|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~-- 236 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN-- 236 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC--
Confidence 456899999999886421 111223332 35899999999999888876654 35689999998877787866
Q ss_pred CCCCCCCeEEEEEEeeEEeCCC--ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 245 KDFNEDGVQNITLLNAVFTGSD--NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 245 ~~~~~~~i~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|++|++.... .| .|....+.....-....|.|+++...
T Consensus 237 --------g~a~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 --------GLSLYEGCHLHAIARNFG-ALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred --------ceEEEEccEEEEecCCCe-EEecCCCCCCCCCceEEEEeeEecCC
Confidence 35679999987532 23 33322111112234577999999864
No 88
>PLN02432 putative pectinesterase
Probab=88.57 E-value=9.5 Score=36.14 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=73.4
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+... ..+..+-+. ..++..+.+|.+.+..|.+-... ..-.++||.+.+.-++-+|.
T Consensus 92 ~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~------- 161 (293)
T PLN02432 92 LASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN------- 161 (293)
T ss_pred ECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC-------
Confidence 45789999999998642 222333332 35889999999999888876654 35689999998877777876
Q ss_pred CCeEEEEEEeeEEeCC--CceEEEEeecCCCCceEEeEEEEeEEEec
Q 037377 250 DGVQNITLLNAVFTGS--DNGVRIKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~--~~gi~i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
-...|++|++... ..| .|....+.....-....|.|+++..
T Consensus 162 ---g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ---AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ---ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 3467888888642 123 3433221112222357899999985
No 89
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=88.39 E-value=7.2 Score=39.83 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=71.0
Q ss_pred eeccEEEEeeEEecCcc----ceeEee-ceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEceEEecCCceEEeCCCc
Q 037377 148 WANNILISGLTSINSQQ----THLVIN-SCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITGVTLKTGDDCISIGPGT 222 (387)
Q Consensus 148 ~~~nv~i~~v~i~n~~~----~~i~~~-~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s 222 (387)
..+++..++++|+|... ..+.+. ..+...+.+|+|...+ |-+.... .+-..++|+|...=|-| .|.
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI---FG~ 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI---FGN 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE---ecc
Confidence 56788888888888643 233332 4677777777777654 3344433 23567777777654533 123
Q ss_pred eeEEEEeeEEeCC---ce--eEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEE----EeecCCCCceEEeEEEEeEEEe
Q 037377 223 RNLFMNNIKCGPG---HG--VSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRI----KSWARPSNSFVRNVLFQNLIMN 293 (387)
Q Consensus 223 ~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i----~~~~~~~~g~v~nI~~~ni~i~ 293 (387)
-...++||++..- .+ -.|=..+.. ....-..+.|.||++......... +.+=|..-..-..+.|.+..|.
T Consensus 339 a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~l~ 417 (497)
T PLN02698 339 AAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESYID 417 (497)
T ss_pred cceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecccC
Confidence 4667777777521 11 011111110 112235677777777765321111 1111111223456666666665
Q ss_pred cC
Q 037377 294 NV 295 (387)
Q Consensus 294 ~~ 295 (387)
+.
T Consensus 418 ~~ 419 (497)
T PLN02698 418 DA 419 (497)
T ss_pred Cc
Confidence 53
No 90
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=88.38 E-value=6.2 Score=40.95 Aligned_cols=114 Identities=9% Similarity=0.050 Sum_probs=75.4
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|.+..|-+...+ ..-.++||++.+.-++-+|.
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 413 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------- 413 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-------
Confidence 457899999999886432222333332 35889999999999888776665 34569999998877788876
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.... ..-.|....+.....-..+.|.|+++....
T Consensus 414 ---a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 ---SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ---ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 46779999986431 112233321112233456889999998653
No 91
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=88.31 E-value=5.6 Score=41.97 Aligned_cols=113 Identities=8% Similarity=0.082 Sum_probs=75.5
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|....|-+.... ..-.+++|++.+.-++-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC-------
Confidence 467899999999886532223334333 35889999999999888776654 35688999998776777765
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... ..-.|....+.....-..+.|.|+++...
T Consensus 406 ---a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ---AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ---ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 35679999987531 12234322111223345688999999875
No 92
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=87.97 E-value=13 Score=37.77 Aligned_cols=114 Identities=7% Similarity=-0.019 Sum_probs=76.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|....|-+...+ ..-.+++|.+.+.-++-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 456888899999886432223344443 35889999999999889876664 35689999998877777876
Q ss_pred CCeEEEEEEeeEEeCCCc----eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSDN----GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+..... .-.|....+.....-..+.|.|+++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 567799999975321 12343321112223345889999998754
No 93
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=87.85 E-value=7.4 Score=40.18 Aligned_cols=114 Identities=6% Similarity=0.057 Sum_probs=75.3
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|.+..|-+..++ ..-.++||++.+.-++-+|.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 391 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN------- 391 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc-------
Confidence 457889999999886432222333332 35889999999999989877665 34589999998877777776
Q ss_pred CCeEEEEEEeeEEeCCCc----eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSDN----GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.-... .-.|....+.....-..+.|.|+++....
T Consensus 392 ---a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 392 ---AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred ---ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 456788998865321 11233221112233456889999998643
No 94
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=87.82 E-value=13 Score=38.25 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=74.5
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 170 NSCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
...+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+....+ .-.+++|++.+.-++-+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC------
Confidence 3467888999999886432222333333 257899999999998888776652 3467999998877777876
Q ss_pred CCCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 249 EDGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||.+.... ..-.|....+.....-....|.|+++...
T Consensus 362 ----a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ----ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ----ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 35678999887531 11223322111223334578999999764
No 95
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=87.76 E-value=9.3 Score=39.24 Aligned_cols=113 Identities=6% Similarity=0.084 Sum_probs=73.3
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+...++ .-.+++|++.+.-++-+|.
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~------- 373 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN------- 373 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC-------
Confidence 457888999999886432222334443 258899999999998887766652 4488999998877777776
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||.+.... ..-.|....+.....-..+.|.|+++...
T Consensus 374 ---a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ---AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ---ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 34668888886431 11223322111222334678999999764
No 96
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=87.68 E-value=6.8 Score=40.39 Aligned_cols=114 Identities=7% Similarity=0.035 Sum_probs=71.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 380 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------- 380 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc-------
Confidence 456788888888876432223333332 25788899999998888766554 24478899998776777765
Q ss_pred CCeEEEEEEeeEEeCCCc----eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSDN----GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||++..... .-.|....+.....-..+.|.|+++....
T Consensus 381 ---a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 381 ---AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ---cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 355688888865321 11333221112233456889999998743
No 97
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=87.34 E-value=8.4 Score=40.00 Aligned_cols=113 Identities=10% Similarity=0.052 Sum_probs=73.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-------
Confidence 457899999999886432222333332 35788999999999888877665 34588999998777777766
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||.+.... ..-.|....+.....-..+.|.|+++...
T Consensus 409 ---a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ---AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ---ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 45678899886531 11123322111223345678999999764
No 98
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.27 E-value=32 Score=33.99 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=29.5
Q ss_pred ceeEEEEeeEEeCC--ceeEEeecCC---------------CCCCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEe
Q 037377 222 TRNLFMNNIKCGPG--HGVSIGSLGK---------------DFNEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRN 284 (387)
Q Consensus 222 s~ni~i~n~~~~~~--~gi~igs~g~---------------~~~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~n 284 (387)
+.|..+++...-.. +|+-+|+... |+-..=..|=.|+|+...++ .|+.+.. .+.+++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~--DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM--DGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE--ECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee--cCCCceEee
Confidence 35677777765433 3566665311 00000124555677766665 4443332 236677777
Q ss_pred EEEEeEE
Q 037377 285 VLFQNLI 291 (387)
Q Consensus 285 I~~~ni~ 291 (387)
|+.+++.
T Consensus 340 i~~~d~~ 346 (549)
T PF09251_consen 340 ITVQDCA 346 (549)
T ss_dssp EEEES-S
T ss_pred EEeeccc
Confidence 7777654
No 99
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.11 E-value=15 Score=36.24 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=27.3
Q ss_pred eeEEEEeeEEeCCceeEEeecCCCCCCCCeEEEEEEeeEEeCCCceEEEEee
Q 037377 223 RNLFMNNIKCGPGHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDNGVRIKSW 274 (387)
Q Consensus 223 ~ni~i~n~~~~~~~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~gi~i~~~ 274 (387)
.|=.|+|....+++|+-+|-.| ..+.++||++++| ...|+.++..
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~----~g~G~~~~~~ 355 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDC----AGAGIFIRGT 355 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-----SSESEEEECC
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeecc----cCCceEEeec
Confidence 4667888888888888877655 3455777777766 3467777643
No 100
>PLN02176 putative pectinesterase
Probab=86.77 E-value=12 Score=36.14 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=73.2
Q ss_pred ceeeEEEEeEEEECCCCC------CCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeec
Q 037377 171 SCNNVNVRNVKVVAPDQS------PNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSL 243 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~------~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~ 243 (387)
.++++..+|++|.+.... ..+..+-+. ..+...+.+|.+.+..|-+-... ..-.+++|.+.+.-++-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC-
Confidence 467899999999886421 112233222 25889999999999888876654 46778999998877777766
Q ss_pred CCCCCCCCeEEEEEEeeEEeCCC--------ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 244 GKDFNEDGVQNITLLNAVFTGSD--------NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 244 g~~~~~~~i~ni~i~n~~~~~~~--------~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... .| .|....+.....-....|.|+++...
T Consensus 197 ---------a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 ---------AQSIFEGCTLKLTLGIYPPNEPYG-TITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ---------ceEEEeccEEEEecccCCCCCCcE-EEEeCCCCCCCCCcEEEEECCEEccC
Confidence 35679999987421 12 23222111112234577999999864
No 101
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=86.77 E-value=9 Score=40.00 Aligned_cols=114 Identities=9% Similarity=0.111 Sum_probs=74.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc-------
Confidence 457889999999886432222333332 35889999999999888776665 24488999998877777765
Q ss_pred CCeEEEEEEeeEEeCCC--ce--EEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD--NG--VRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~--~g--i~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
....|+||.+.-.. .| -.|....+.+...-..+.|+|+++....
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 46779999987531 11 1233221122233456889999997643
No 102
>PLN02497 probable pectinesterase
Probab=86.75 E-value=8.1 Score=37.24 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=73.5
Q ss_pred eceeeEEEEeEEEECCCCCC-------CCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEe
Q 037377 170 NSCNNVNVRNVKVVAPDQSP-------NTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIG 241 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~-------n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~ig 241 (387)
...+++..+|++|.+....+ .+..+-+. ..++..+.||.+.+..|-+-... ..-.++||++.+.-++-+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 35678999999998864211 11222222 35889999999999888875544 3568899999887777776
Q ss_pred ecCCCCCCCCeEEEEEEeeEEeCCCc------eEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 242 SLGKDFNEDGVQNITLLNAVFTGSDN------GVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 242 s~g~~~~~~~i~ni~i~n~~~~~~~~------gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
. -...|+||++..... .-.|....+.....-....|.|+++...
T Consensus 190 ~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 190 S----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred C----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 6 356788888874211 1233322111222334567999999863
No 103
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=86.61 E-value=14 Score=38.11 Aligned_cols=114 Identities=8% Similarity=0.042 Sum_probs=75.3
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 170 NSCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
...+++..+|++|.+.........+-+. .++...+.+|.|....|-+...+ ..-.++||++.+.-++-+|.
T Consensus 310 v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~------ 381 (538)
T PLN03043 310 VSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN------ 381 (538)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec------
Confidence 3457899999999886432222334333 35789999999999888776665 34688999998877788876
Q ss_pred CCCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 249 EDGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||.+.-.. ..-.|....+.....-..+.|.|+++...
T Consensus 382 ----a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ----AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ----ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 45679999986531 11123322111222334688999999864
No 104
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=86.34 E-value=12 Score=39.06 Aligned_cols=114 Identities=7% Similarity=0.053 Sum_probs=75.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|.+..|-+.... ..-.+++|++.+.-++-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 567899999999886422222333332 35889999999999888776654 35689999998877777876
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.-.. ..-.|....+.....-..+.|.|+++....
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 46779999986531 111333221112233456889999998643
No 105
>PLN02314 pectinesterase
Probab=86.32 E-value=12 Score=39.14 Aligned_cols=114 Identities=6% Similarity=0.072 Sum_probs=74.9
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|.+..|-+...+ ..-.++||++.+.-++-+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC-------
Confidence 567899999999886422222333332 35788999999999888876665 34588999998877777765
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.-.. ..-.|....+.+...-..+.|.|+++....
T Consensus 434 ---a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ---AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 45679999986531 111233221112234456789999998754
No 106
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=86.08 E-value=12 Score=38.93 Aligned_cols=114 Identities=9% Similarity=0.142 Sum_probs=75.0
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 467899999999886432223334332 35889999999999888776654 34578999998877777766
Q ss_pred CCeEEEEEEeeEEeCCC--c--eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD--N--GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~--~--gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||++.-.. . .-.|....+.....-..+.|.|+++....
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 35678999986431 1 12343221111223346889999998754
No 107
>PLN02671 pectinesterase
Probab=85.78 E-value=13 Score=36.23 Aligned_cols=111 Identities=10% Similarity=0.111 Sum_probs=71.2
Q ss_pred ceeeEEEEeEEEECCCC----CCCCC--ceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecC
Q 037377 171 SCNNVNVRNVKVVAPDQ----SPNTD--GIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLG 244 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~----~~n~D--Gi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g 244 (387)
..+++..+|++|.+... ..... .+.+. .+++.+.||.+.+..|-+-... ..-.++||++.+.-++-+|.
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~-- 226 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGN-- 226 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecc--
Confidence 35677788888877631 11122 23333 4889999999999888776554 35688999998877777765
Q ss_pred CCCCCCCeEEEEEEeeEEeCCC--ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 245 KDFNEDGVQNITLLNAVFTGSD--NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 245 ~~~~~~~i~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... .| .|..........-....|.|+++...
T Consensus 227 --------g~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 227 --------AKSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred --------eeEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEccC
Confidence 35678889887532 23 33322111112234577999999763
No 108
>PLN02197 pectinesterase
Probab=85.76 E-value=13 Score=38.83 Aligned_cols=115 Identities=9% Similarity=0.103 Sum_probs=75.1
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 170 NSCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
...+++..+|++|.+.........+-+. .++...+.+|.|....|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGK------ 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccc------
Confidence 3467899999999886432222334333 25889999999999889887665 34588999998877777766
Q ss_pred CCCeEEEEEEeeEEeCCC--ce--EEEEeecCCC-CceEEeEEEEeEEEecCC
Q 037377 249 EDGVQNITLLNAVFTGSD--NG--VRIKSWARPS-NSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~--~g--i~i~~~~~~~-~g~v~nI~~~ni~i~~~~ 296 (387)
....|+||++.-.. .| -.|....+.. ...-..+.|.|+++....
T Consensus 433 ----a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 433 ----SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ----eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 34679999886421 11 1232211111 233456889999998743
No 109
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=85.30 E-value=13 Score=38.90 Aligned_cols=114 Identities=7% Similarity=0.065 Sum_probs=74.4
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++...+.||.|....|-+...+ ..=.+++|++.+.-++-+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 467888999999886432222333332 35889999999999888776655 34578999998877777766
Q ss_pred CCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.... ..-.|....+.....-..+.|.|+++....
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 45679999986531 112333221112233456889999997643
No 110
>PLN02304 probable pectinesterase
Probab=84.81 E-value=22 Score=34.96 Aligned_cols=112 Identities=11% Similarity=0.109 Sum_probs=71.8
Q ss_pred ceeeEEEEeEEEECCCCC-----CCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecC
Q 037377 171 SCNNVNVRNVKVVAPDQS-----PNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLG 244 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~-----~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g 244 (387)
..+++..+|++|.+.... ..+..+-+. .++...+.+|.|....|-+-... ..-.++||++.+.-++-+|.
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~-- 235 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD-- 235 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc--
Confidence 357888899998876321 112233332 35889999999999888876554 35679999998877788876
Q ss_pred CCCCCCCeEEEEEEeeEEeCCCce---------EEEEeecCCCCceEEeEEEEeEEEec
Q 037377 245 KDFNEDGVQNITLLNAVFTGSDNG---------VRIKSWARPSNSFVRNVLFQNLIMNN 294 (387)
Q Consensus 245 ~~~~~~~i~ni~i~n~~~~~~~~g---------i~i~~~~~~~~g~v~nI~~~ni~i~~ 294 (387)
-...|+||.+...... -.|....+.....-....|.|+++..
T Consensus 236 --------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 236 --------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred --------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 3557899988753211 12332211112223456699999976
No 111
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=83.48 E-value=25 Score=35.02 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=73.2
Q ss_pred eceeeEEEEeEEEECCCC----CCCCCceeee-ccccEEEEceEEecCCceEEeCCC----------ceeEEEEeeEEeC
Q 037377 170 NSCNNVNVRNVKVVAPDQ----SPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPG----------TRNLFMNNIKCGP 234 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~----------s~ni~i~n~~~~~ 234 (387)
...+++..+|++|.+... ..+...+-+. ..+.+.+.+|.|.+..|-+-..+. ...-.+++|.+.+
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 457789999999988642 1112222222 257899999999998888766321 1257789999987
Q ss_pred CceeEEeecCCCCCCCCeEEEEEEeeEEeCCCc----eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 235 GHGVSIGSLGKDFNEDGVQNITLLNAVFTGSDN----GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 235 ~~gi~igs~g~~~~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
.-++-+|. -...|+||++..... .-.|... ......-....|.|+++....
T Consensus 283 ~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 283 DVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred cccEEccC----------ceEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecCC
Confidence 77777766 356688888866321 1223221 111223345779999998743
No 112
>PLN02634 probable pectinesterase
Probab=83.41 E-value=20 Score=34.94 Aligned_cols=111 Identities=9% Similarity=0.092 Sum_probs=71.3
Q ss_pred eeeEEEEeEEEECCCC-----CCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCC
Q 037377 172 CNNVNVRNVKVVAPDQ-----SPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGK 245 (387)
Q Consensus 172 ~~nv~i~~~~i~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~ 245 (387)
.+++..+|++|.+... ..+...+-+. ..++..+.+|.+.+..|-+.... ..-.++||.+.+.-++-+|.
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~--- 222 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN--- 222 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC---
Confidence 4678888888877531 1112223332 25789999999999888876554 36778999998877777765
Q ss_pred CCCCCCeEEEEEEeeEEeCCC--ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 246 DFNEDGVQNITLLNAVFTGSD--NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 246 ~~~~~~i~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... .| .|....+.....-....|.|+++...
T Consensus 223 -------g~a~Fe~C~I~s~~~~~g-~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 223 -------GRSMYKDCELHSIASRFG-SIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred -------ceEEEeccEEEEecCCCc-EEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 34568899887542 23 23322111122234578999999764
No 113
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.01 E-value=38 Score=34.68 Aligned_cols=114 Identities=9% Similarity=0.030 Sum_probs=75.1
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .+.+..+.+|.|.+..|-+....+ .-.+++|++.+.-++-+|.
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~------- 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN------- 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc-------
Confidence 467899999999886432222333332 258899999999999898776652 3488999998877788876
Q ss_pred CCeEEEEEEeeEEeCCCc--e--EEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGSDN--G--VRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||++..... + -.|....+.....-..+.|.|+++....
T Consensus 339 ---a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ---AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ---cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 345689998864321 1 1232221112233456889999998653
No 114
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=82.37 E-value=5.5 Score=39.57 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=11.7
Q ss_pred eEEeEEEEeEEEecCCccEEEE
Q 037377 281 FVRNVLFQNLIMNNVQNPIIVD 302 (387)
Q Consensus 281 ~v~nI~~~ni~i~~~~~~i~I~ 302 (387)
.+.|+++.+.++-++..+|.+.
T Consensus 308 qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 308 QVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp --BSEEEES-EEES-SEEEESS
T ss_pred ccceeEEecceEEccCCceEEc
Confidence 5677777777777666665543
No 115
>PLN02773 pectinesterase
Probab=79.57 E-value=47 Score=31.86 Aligned_cols=113 Identities=10% Similarity=0.107 Sum_probs=77.5
Q ss_pred eceeeEEEEeEEEECCCCCCCCCc--eeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCC
Q 037377 170 NSCNNVNVRNVKVVAPDQSPNTDG--IHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDF 247 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~n~DG--i~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~ 247 (387)
..++++..+|++|.+......+.. +.+. ++++.+.||.+.+..|.+-.+. ..-.++||.+.+.-++-+|+
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~----- 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN----- 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-----
Confidence 356789999999998643212223 3333 5889999999999999887764 36789999998877888876
Q ss_pred CCCCeEEEEEEeeEEeCCCceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 248 NEDGVQNITLLNAVFTGSDNGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 248 ~~~~i~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||++.....|. |..........-....|.|+++....
T Consensus 171 -----g~a~Fe~c~i~s~~~g~-ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 -----STALLEHCHIHCKSAGF-ITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -----cEEEEEeeEEEEccCcE-EECCCCCCCCCCceEEEEccEEecCC
Confidence 35789999998655553 43221111112234679999998754
No 116
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=67.56 E-value=97 Score=29.44 Aligned_cols=112 Identities=12% Similarity=0.137 Sum_probs=66.3
Q ss_pred ceeeEEEEeEEEECCCCC--CCCCceeeeccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQS--PNTDGIHVQASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
..+++.++|++|.+.... ...-.+.+. ++++.+.+|.+.+..|-+-... ..-.++||++.+.-++-.|.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~------ 155 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGN------ 155 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEES------
T ss_pred cccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECC------
Confidence 467899999999875421 112234443 4789999999999889887665 36788999998877888876
Q ss_pred CCCeEEEEEEeeEEeCCC----ceEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 249 EDGVQNITLLNAVFTGSD----NGVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++.... .+-.|..........-....|.|+++...
T Consensus 156 ----~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 156 ----GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp ----SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred ----eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 24568899887532 12344332111223345678999999864
No 117
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=61.19 E-value=1.2e+02 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=22.7
Q ss_pred ceeEEEEeeEEeCCc---ee-EEeecCCCCCCCCeEEEEEEeeEEeCCCc
Q 037377 222 TRNLFMNNIKCGPGH---GV-SIGSLGKDFNEDGVQNITLLNAVFTGSDN 267 (387)
Q Consensus 222 s~ni~i~n~~~~~~~---gi-~igs~g~~~~~~~i~ni~i~n~~~~~~~~ 267 (387)
.+||.|.++.|+... .+ -+|.. ...+..|-.|||++|.+..+
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVYH 78 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeeccccc
Confidence 357777777776421 11 11111 12345677777777777643
No 118
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=60.36 E-value=1.9e+02 Score=29.97 Aligned_cols=115 Identities=7% Similarity=0.109 Sum_probs=76.1
Q ss_pred eceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCC
Q 037377 170 NSCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFN 248 (387)
Q Consensus 170 ~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~ 248 (387)
...+++..+|++|.+.........+-+. .++...+.+|.+.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 381 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN------ 381 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc------
Confidence 4567899999999886432222333332 25889999999999999877665 34577999998877777766
Q ss_pred CCCeEEEEEEeeEEeCCCc---eEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 249 EDGVQNITLLNAVFTGSDN---GVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 249 ~~~i~ni~i~n~~~~~~~~---gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+..... .-.|....+.....-....|.|+++....
T Consensus 382 ----a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 ----SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ----ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 356789998875421 12343221112233356789999998743
No 119
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=59.77 E-value=13 Score=34.14 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred ceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCEEEEEE-EEe
Q 037377 22 ANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGRYLIKA-AEF 73 (387)
Q Consensus 22 ~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~Y~~~~-l~l 73 (387)
-+|++....+.-.++=-+-..+-+||++. |.|+|.++. |..
T Consensus 125 y~fy~~K~~~~e~~vY~sF~~Lv~am~~n-----------p~Gty~LgadldA 166 (250)
T PF05342_consen 125 YTFYIEKQKPSENNVYYSFKELVQAMNAN-----------PSGTYKLGADLDA 166 (250)
T ss_pred EEEEeeccccccCCeEEcHHHHHHHHhhC-----------CCceEEECCccch
Confidence 34555555555555555667777777642 788998876 655
No 120
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=57.53 E-value=1.3e+02 Score=31.26 Aligned_cols=114 Identities=11% Similarity=0.175 Sum_probs=77.2
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++.+.+.||.|.+..|-+-..+ ..-.+++|.+.+.-++-+|.
T Consensus 328 ~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~------- 398 (553)
T PLN02708 328 LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN------- 398 (553)
T ss_pred EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC-------
Confidence 467999999999987532222334333 35889999999999999877765 34568999999887888876
Q ss_pred CCeEEEEEEeeEEeCC------Cce--EEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 250 DGVQNITLLNAVFTGS------DNG--VRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~------~~g--i~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
-...|+||.+.-. ..| -.|....+.....-..+.|.|+++....
T Consensus 399 ---a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 399 ---SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred ---ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCC
Confidence 4677999999732 111 2333221122233456889999997643
No 121
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=54.39 E-value=1.1e+02 Score=24.48 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=43.3
Q ss_pred EeeccEEEEeeEEecCc---cceeEeeceeeEEEEeEEEECCCCCCCCCceeeeccccEEEEc-eEEecCCceEE
Q 037377 147 NWANNILISGLTSINSQ---QTHLVINSCNNVNVRNVKVVAPDQSPNTDGIHVQASTGVTITG-VTLKTGDDCIS 217 (387)
Q Consensus 147 ~~~~nv~i~~v~i~n~~---~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~gdD~i~ 217 (387)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+..+. .. .. .+|++++......+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 55666677776666653 67888876666656666655 21 12 6888888877777776 44455555543
No 122
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=50.51 E-value=9.2 Score=19.88 Aligned_cols=15 Identities=33% Similarity=0.744 Sum_probs=5.7
Q ss_pred CchhhhHHHHHHHhh
Q 037377 1 MAIKLIIFLLFVIIF 15 (387)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (387)
||...++..++++.+
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 333333344443333
No 123
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=49.95 E-value=19 Score=19.41 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=11.1
Q ss_pred EEEEEeeEEeCCCc-eEEEE
Q 037377 254 NITLLNAVFTGSDN-GVRIK 272 (387)
Q Consensus 254 ni~i~n~~~~~~~~-gi~i~ 272 (387)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45666666666544 55554
No 124
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=48.56 E-value=1.9e+02 Score=25.43 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=47.2
Q ss_pred ccEEEEceEEec-CC-------ceEEeCCCceeEEEEeeEEeCCceeEEee---cCCCCCCCCeEEEEEEeeEEeCCC--
Q 037377 200 TGVTITGVTLKT-GD-------DCISIGPGTRNLFMNNIKCGPGHGVSIGS---LGKDFNEDGVQNITLLNAVFTGSD-- 266 (387)
Q Consensus 200 ~nv~I~n~~i~~-gd-------D~i~~~~~s~ni~i~n~~~~~~~gi~igs---~g~~~~~~~i~ni~i~n~~~~~~~-- 266 (387)
++|.|++..|.. |. .+|.. +|=.|.+|+|++|.+.++.+|.. .+.....+.---.+++|+.|.++.
T Consensus 34 ~nVhIhhN~fY~tGtn~~~~wvGGIv~-sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r 112 (198)
T PF08480_consen 34 KNVHIHHNIFYDTGTNPNIDWVGGIVT-SGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR 112 (198)
T ss_pred ccEEEECcEeecCCcCCCCceeeeEEe-ccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeeec
Confidence 466666666653 11 23322 22467888888888765332222 111122333344777888777753
Q ss_pred ------ceEEEEeecCCCCceEEeEEEEeEEEecCC
Q 037377 267 ------NGVRIKSWARPSNSFVRNVLFQNLIMNNVQ 296 (387)
Q Consensus 267 ------~gi~i~~~~~~~~g~v~nI~~~ni~i~~~~ 296 (387)
.|..|... ...-....++|..+-+..
T Consensus 113 ~~~~~GtGYgv~N~----L~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 113 KSSPAGTGYGVINY----LPETHSFVLENNCLYNNA 144 (198)
T ss_pred ccCCCCceeEEEec----CCCcceEEEEccceeccC
Confidence 34444422 112345666666665543
No 125
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=46.51 E-value=3.2e+02 Score=27.47 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=21.2
Q ss_pred CCcEEEEcCCEEEEEEEEeeCCCCCcEEEEEe
Q 037377 55 KASTIYVPKGRYLIKAAEFRGPCRNRVTLQID 86 (387)
Q Consensus 55 ~g~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~ 86 (387)
-.+.+++-+|+|....+.+ .|+|.+..+
T Consensus 47 ~e~LIFlH~G~~e~~~i~I----~sdvqiiGA 74 (625)
T KOG1777|consen 47 EEKLIFLHEGTHETETIRI----TSDVQIIGA 74 (625)
T ss_pred ccceEEEEeccccceEEEE----cCCeeEecc
Confidence 3567888999999777777 377887554
No 126
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=45.72 E-value=67 Score=30.80 Aligned_cols=84 Identities=13% Similarity=0.148 Sum_probs=49.3
Q ss_pred eeeEEEEeEEEECCCC----CCCCCceeee-ccccEEEEceEEecCCceEEeCCC------ce----eEEEEeeEEeCCc
Q 037377 172 CNNVNVRNVKVVAPDQ----SPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPG------TR----NLFMNNIKCGPGH 236 (387)
Q Consensus 172 ~~nv~i~~~~i~~~~~----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~------s~----ni~i~n~~~~~~~ 236 (387)
..++..+|+++.+... ..|.-.+-+. .++.+.++||.+....|-+-++.. .. .-.++||.+.+.-
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 3456667777766542 0111122221 247788899998887777766653 11 2347788887655
Q ss_pred eeEEeecCCCCCCCCeEEEEEEeeEEeCC
Q 037377 237 GVSIGSLGKDFNEDGVQNITLLNAVFTGS 265 (387)
Q Consensus 237 gi~igs~g~~~~~~~i~ni~i~n~~~~~~ 265 (387)
++-.|+- -..|.+|.+.-.
T Consensus 268 DfIfGsg----------taVFd~c~i~~~ 286 (405)
T COG4677 268 DFIFGSG----------TAVFDNCEIQVV 286 (405)
T ss_pred eEEeccc----------eEEeccceEEEe
Confidence 6777662 345777776543
No 127
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=44.80 E-value=2e+02 Score=29.82 Aligned_cols=113 Identities=11% Similarity=0.101 Sum_probs=75.3
Q ss_pred ceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCCCC
Q 037377 171 SCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDFNE 249 (387)
Q Consensus 171 ~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~~~ 249 (387)
..+++..+|++|.+.........+-+. .++.+.+.+|.|.+..|-+...+ ..-.+++|++.+.-++-+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-------
Confidence 467899999999886432222333332 35889999999999888776554 35589999998877777876
Q ss_pred CCeEEEEEEeeEEeCCCc--e--EEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 250 DGVQNITLLNAVFTGSDN--G--VRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 250 ~~i~ni~i~n~~~~~~~~--g--i~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++..... | -.|....+.....-....|.|+++...
T Consensus 386 ---a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 456789998865321 1 133222111222334678999999764
No 128
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=44.41 E-value=3.2e+02 Score=28.37 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=76.8
Q ss_pred eeceeeEEEEeEEEECCCCCCCCCceeee-ccccEEEEceEEecCCceEEeCCCceeEEEEeeEEeCCceeEEeecCCCC
Q 037377 169 INSCNNVNVRNVKVVAPDQSPNTDGIHVQ-ASTGVTITGVTLKTGDDCISIGPGTRNLFMNNIKCGPGHGVSIGSLGKDF 247 (387)
Q Consensus 169 ~~~~~nv~i~~~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~~~~~s~ni~i~n~~~~~~~gi~igs~g~~~ 247 (387)
....+++..+|++|.+.....+...+-+. .++++.+.||.|.+..|-+-..+ ..-.++||++.+.-++-+|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~----- 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN----- 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC-----
Confidence 34567899999999987432222333332 25889999999999989876665 34589999998877788876
Q ss_pred CCCCeEEEEEEeeEEeCCCc----eEEEEeecCCCCceEEeEEEEeEEEecC
Q 037377 248 NEDGVQNITLLNAVFTGSDN----GVRIKSWARPSNSFVRNVLFQNLIMNNV 295 (387)
Q Consensus 248 ~~~~i~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~i~~~ 295 (387)
-...|+||++..... .-.|....+.....-..+.|.|+++...
T Consensus 388 -----a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 -----GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred -----ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 356799999975321 1233322111222335678999999863
No 129
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=40.98 E-value=73 Score=28.50 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=31.0
Q ss_pred CchhhhHHHHHHHhhhccCCCceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCC
Q 037377 1 MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKG 64 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G 64 (387)
||+..++++.+++.++++ ..-+|.-||.-|- +|+-..-|... .+..|-.|.+-.|
T Consensus 1 Mk~~~~i~~~~~La~s~~---~~adinlYGpGGP----htaL~~vA~~~--~ektg~kVnvt~G 55 (252)
T COG4588 1 MKKAVLILLIFLLAFSSA---ANADINLYGPGGP----HTALKDVAKKY--EEKTGIKVNVTAG 55 (252)
T ss_pred CchhHHHHHHHHHHhhhh---hcceEEEecCCCC----cHHHHHHHHHH--HHHhCeEEEEecC
Confidence 787666665555555532 2246777998763 34444444433 3334566777555
No 130
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=35.10 E-value=41 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=18.3
Q ss_pred CchhhhHHHHHHHhhhccCCCceEEEeecC
Q 037377 1 MAIKLIIFLLFVIIFIKSSNAANYNVITYG 30 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~V~d~G 30 (387)
||+.++++||++++.....+...+++..|.
T Consensus 1 MKll~~lilli~~~~~~~~~~~yvn~~py~ 30 (212)
T PF11912_consen 1 MKLLISLILLILLIINFSSSSQYVNFQPYQ 30 (212)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcEEEEEEec
Confidence 887555444444433322556779999997
No 131
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.71 E-value=68 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=11.0
Q ss_pred CchhhhHHHHHHHhhhccC
Q 037377 1 MAIKLIIFLLFVIIFIKSS 19 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (387)
||+.+++++++++.+++.+
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 7777666555555555444
No 132
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=28.17 E-value=3.1e+02 Score=21.88 Aligned_cols=12 Identities=17% Similarity=0.119 Sum_probs=5.7
Q ss_pred EEEEeeccEEEE
Q 037377 144 ITFNWANNILIS 155 (387)
Q Consensus 144 i~~~~~~nv~i~ 155 (387)
+.+.+|+|.+|.
T Consensus 42 v~i~~c~n~~i~ 53 (120)
T PF07986_consen 42 VFIENCENCTII 53 (120)
T ss_dssp EEEES-ECEEEE
T ss_pred EEEecCCceEEE
Confidence 455555555543
No 133
>PHA00672 hypothetical protein
Probab=27.68 E-value=1e+02 Score=25.14 Aligned_cols=28 Identities=32% Similarity=0.310 Sum_probs=19.0
Q ss_pred cEEEEcCCEEEEEEEEeeCCCCCcEEEEEeeEE
Q 037377 57 STIYVPKGRYLIKAAEFRGPCRNRVTLQIDGTI 89 (387)
Q Consensus 57 ~~v~ip~G~Y~~~~l~l~~~~ks~v~l~~~G~l 89 (387)
.++.||+|+-++|.+.-. +++ |.+.|-+
T Consensus 50 Rei~IPkGt~LtG~~hkf----~~~-ii~sG~i 77 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV----STV-LIFSGHA 77 (152)
T ss_pred EEEeccCceeeeeeeeEe----eEE-EEecccE
Confidence 468899999998885431 666 6555643
No 134
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.03 E-value=36 Score=23.79 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=10.4
Q ss_pred CchhhhHHHHHHHhhh
Q 037377 1 MAIKLIIFLLFVIIFI 16 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (387)
|..|++++.+||+.+.
T Consensus 1 MA~Kl~vialLC~aLv 16 (65)
T PF10731_consen 1 MASKLIVIALLCVALV 16 (65)
T ss_pred CcchhhHHHHHHHHHH
Confidence 7777777666665433
No 135
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=25.24 E-value=1.1e+02 Score=30.54 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=25.6
Q ss_pred EEeEEEecCCCceEEEE----cCCCCceecEEEEeEEEEecCCccceeee
Q 037377 326 YRNIKGTSKTPEAVTFD----CSPTNPCRGIRLHDIKLTYMNRAATSSCK 371 (387)
Q Consensus 326 ~~nI~~~~~~~~~~~i~----~~~~~~i~~i~~~ni~i~~~~~~~~~~c~ 371 (387)
+|-+++......++-.. |...+.++=|.++.+-.....+.....|.
T Consensus 562 YRC~TCNttdRNAIC~nCI~~CH~GH~Vefir~Drffcdcgagtl~~~c~ 611 (625)
T KOG1777|consen 562 YRCITCNTTDRNAICVNCIKRCHEGHDVEFIRHDRFFCDCGAGTLSNVCD 611 (625)
T ss_pred eEeeecCCccccHHHHHHHHHhcCCCceEEEeeceEEEecCCceecceee
Confidence 34444444333343333 34667777777777766654455666664
No 136
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.06 E-value=32 Score=26.70 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=3.7
Q ss_pred CchhhhH
Q 037377 1 MAIKLII 7 (387)
Q Consensus 1 m~~~~~~ 7 (387)
|..|.|+
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 6655443
No 137
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=24.68 E-value=75 Score=21.29 Aligned_cols=14 Identities=14% Similarity=-0.078 Sum_probs=7.2
Q ss_pred ccCHHHHHHHHHHH
Q 037377 37 TDSTKPFLKAWASA 50 (387)
Q Consensus 37 tddt~aiq~Ai~~a 50 (387)
..|-++-=+||+.+
T Consensus 29 G~Di~~~G~ai~~a 42 (48)
T PRK10081 29 GEDISDGGNAISGA 42 (48)
T ss_pred hHhHHHHHHHHHHH
Confidence 34555555555543
No 138
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=23.50 E-value=1e+02 Score=28.73 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=28.3
Q ss_pred CceEEEeecCccCCCCccCHHHHHHHHHHHhhcCCCcEEEEcCCE
Q 037377 21 AANYNVITYGAKPDGRTDSTKPFLKAWASACRSAKASTIYVPKGR 65 (387)
Q Consensus 21 ~~~~~V~d~GA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~ip~G~ 65 (387)
...+-|..-||-.| +++.+.|.++|. .+|+.||+|.|-
T Consensus 86 g~dlvv~SvGALaD------~~~~~~l~~~A~-~~g~~i~ipSGA 123 (267)
T PRK13301 86 GLDMIICSAGALAD------DALRARLIAAAE-AGGARIRVPAGA 123 (267)
T ss_pred CCCEEEEChhHhcC------HHHHHHHHHHHH-hCCCEEEEeChH
Confidence 34566777888887 677777776544 467899999995
No 139
>COG5510 Predicted small secreted protein [Function unknown]
Probab=22.80 E-value=75 Score=20.75 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=5.6
Q ss_pred cCHHHHHHHHHH
Q 037377 38 DSTKPFLKAWAS 49 (387)
Q Consensus 38 ddt~aiq~Ai~~ 49 (387)
.|-+.--+||.+
T Consensus 30 ~DIq~~G~al~~ 41 (44)
T COG5510 30 KDIQSGGKALSD 41 (44)
T ss_pred hhHHHHHHHHHh
Confidence 444444455543
No 140
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=22.20 E-value=86 Score=21.62 Aligned_cols=13 Identities=23% Similarity=0.659 Sum_probs=6.7
Q ss_pred HhhcCCCcEEEEcCC
Q 037377 50 ACRSAKASTIYVPKG 64 (387)
Q Consensus 50 ac~~~~g~~v~ip~G 64 (387)
+|...| -+|||+-
T Consensus 19 ~CG~KG--PLy~Ppa 31 (58)
T COG5567 19 GCGLKG--PLYFPPA 31 (58)
T ss_pred hcccCC--CccCChh
Confidence 365432 3666654
No 141
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=22.07 E-value=55 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=12.6
Q ss_pred CchhhhHHHHHHHhhhccCCCceEEEeec
Q 037377 1 MAIKLIIFLLFVIIFIKSSNAANYNVITY 29 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~V~d~ 29 (387)
||+.+++.++++.++.+++++ =+|.|-
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa--N~iRDv 27 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA--NYIRDV 27 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh--cceecC
Confidence 775554444443333444433 355554
No 142
>PRK09810 entericidin A; Provisional
Probab=21.83 E-value=78 Score=20.47 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=5.9
Q ss_pred cCHHHHHHHHHH
Q 037377 38 DSTKPFLKAWAS 49 (387)
Q Consensus 38 ddt~aiq~Ai~~ 49 (387)
.|-++-=+||++
T Consensus 27 kDv~~~G~aI~~ 38 (41)
T PRK09810 27 EDIKHLGNSISR 38 (41)
T ss_pred HhHHHHHHHHHh
Confidence 444544455544
No 143
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=21.26 E-value=88 Score=28.91 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=25.0
Q ss_pred CchhhhHHHHHHHhhhccCCCceEEEeecCccCCCCccCHHHHHHHHHHH
Q 037377 1 MAIKLIIFLLFVIIFIKSSNAANYNVITYGAKPDGRTDSTKPFLKAWASA 50 (387)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~V~d~GA~~dg~tddt~aiq~Ai~~a 50 (387)
||.+.+++++.++++.+++ ++.=|..- ...|..+|.++|+..
T Consensus 1 ~~~~~~l~~~~~~~~l~gC-----~~~LysgL---~~~dA~~I~a~L~~~ 42 (249)
T PRK15348 1 MKVHRIVFLTVLTFFLTAC-----DVDLYRSL---PEDEANQMLALLMQH 42 (249)
T ss_pred CchHHHHHHHHHHHHHhcC-----ChHHHcCC---CHHHHHHHHHHHHHc
Confidence 8876666555555555544 44445432 245678899999653
Done!