Query 037378
Match_columns 741
No_of_seqs 166 out of 1153
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-186 5E-191 1521.9 40.1 698 33-741 46-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 3E-169 7E-174 1454.2 51.9 659 35-708 1-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 5E-120 1E-124 1063.7 48.6 622 41-705 1-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3E-113 6E-118 1003.9 43.4 599 57-703 1-624 (624)
5 TIGR00733 putative oligopeptid 100.0 1E-63 2.2E-68 573.7 42.0 536 57-702 1-589 (591)
6 COG1297 Predicted membrane pro 100.0 1.3E-49 2.9E-54 436.8 27.4 556 53-708 10-619 (624)
7 PF03169 OPT: OPT oligopeptide 87.6 16 0.00034 43.8 16.7 103 446-550 2-121 (624)
8 COG0628 yhhT Predicted permeas 60.1 1.3E+02 0.0027 33.3 12.9 157 375-551 164-331 (355)
9 TIGR00733 putative oligopeptid 47.1 5.8E+02 0.013 30.6 19.8 229 446-699 2-265 (591)
10 TIGR02872 spore_ytvI sporulati 42.4 2E+02 0.0044 31.0 10.9 40 511-550 286-329 (341)
11 PF03606 DcuC: C4-dicarboxylat 34.3 1.9E+02 0.0041 33.5 9.3 91 417-519 251-342 (465)
12 PF01594 UPF0118: Domain of un 33.5 6.3E+02 0.014 27.1 13.0 55 497-551 258-317 (327)
13 TIGR02106 cyd_oper_ybgT cyd op 27.8 63 0.0014 22.8 2.4 18 62-79 5-22 (30)
14 PF09512 ThiW: Thiamine-precur 27.6 2.8E+02 0.0061 27.1 7.7 28 528-555 89-117 (150)
15 PRK10983 putative inner membra 27.2 9.1E+02 0.02 27.0 15.1 44 507-550 287-334 (368)
16 PF08173 YbgT_YccB: Membrane b 24.5 79 0.0017 22.0 2.4 18 62-79 5-22 (28)
17 PRK14749 hypothetical protein; 24.1 82 0.0018 22.1 2.4 18 62-79 5-22 (30)
18 PRK10582 cytochrome o ubiquino 20.9 2.4E+02 0.0052 26.0 5.6 54 51-105 6-59 (109)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-186 Score=1521.87 Aligned_cols=698 Identities=47% Similarity=0.984 Sum_probs=682.5
Q ss_pred cccCCCchhhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCC
Q 037378 33 DEINDSPIEQVRLTIPITDDPTLPTFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSK 112 (741)
Q Consensus 33 ~~~~~sp~~evr~~v~~~ddp~~p~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~ 112 (741)
+++|||||||||+.||.+|||++|++|||+|++|++.|++++++||+|++|++.++++.+.+|++++|+||+|+|+||+|
T Consensus 46 ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~ 125 (761)
T KOG2262|consen 46 EDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTW 125 (761)
T ss_pred cccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCcccccccCCCCCCccchhhhhhhhcccccchhhhhHHHHhHHhhcCCccHHHHHHHHHHHhhhhhhhhhhcccc
Q 037378 113 PVKVPGTKWTFSMNPGPFNIKEHVVVSILATTGLEVPFGTTVMGIRRIFYHKYLNFWIGLLMIMTSQILGYGFAGIFMKF 192 (741)
Q Consensus 113 ~~~~~g~~~~~~lNPgpf~~kE~~~i~imAsaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~qllG~g~Ag~lR~~ 192 (741)
++++ ++||+|||||||||.|||++++++||++++.+|++.+|.+|++||++++++++++++++++|++|||+||++||+
T Consensus 126 ~~~~-~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 126 KFGL-GGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred eeec-CcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 9987 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccc------------cccccccCCccccchHHHHHHHHHHHHHHhhcccchhhhcccccceeeeccCccceeeec
Q 037378 193 LVYNPYMW------------SLHEVEERPKRGITKLQIFVMATVASFAYASLPGYLFPSLGALSVICWFWKNSVIAQQIG 260 (741)
Q Consensus 193 lV~p~~l~------------aLh~~~~~~~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~~~~~wi~p~n~~~~~i~ 260 (741)
+|||++|+ +||++|++++.+++|+|||+++|.++|+|+|+|+|+||+|++++|.||++|+|.+++|||
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~ 284 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIG 284 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhc
Confidence 99999997 999998876666999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccchhhccchhHHH----HHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCccccccCCceeece
Q 037378 261 SGRHGLGVGSFSLDLSAISGALVFPLST----VVSLSIGTLLLLYVINPIAYWTNSNNARLFPFSSTQLFNQSGQVYNVS 336 (741)
Q Consensus 261 G~~~GlGl~~~tfDWs~i~~~~g~pl~~----~~~~~~G~vl~~~ii~P~~~~~n~~~~~~~P~~s~~lfd~~g~~Yn~s 336 (741)
||.+|||++|+||||++|++|+|+||.+ .+|.++|.++..+|+.|++||+|.|+++++|+.|+++||++|++||++
T Consensus 285 sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt 364 (761)
T KOG2262|consen 285 SGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVT 364 (761)
T ss_pred ccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEecee
Confidence 9999999999999999998899999887 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhccc-cC
Q 037378 337 KVINDNDLTFNQKAYEEYSKLYMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRLMK-YK 415 (741)
Q Consensus 337 ~i~~~~~~~~~~~~y~~y~~~~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~lm~-y~ 415 (741)
+|+| +|+++|.+||++|||+|+++.++++||++||+++|+++|++|+|+||||+..|++ .++.+|+|.|+|| ||
T Consensus 365 ~Il~-~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~----~~k~~DiHtrlMkkYK 439 (761)
T KOG2262|consen 365 KILD-SKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA----FNKKMDIHTRLMKKYK 439 (761)
T ss_pred eeec-CccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc----cccCCCHHHHHHHHhc
Confidence 9999 9999999999999999999999999999999999999999999999999999987 3567899999999 99
Q ss_pred CCChHHHHHHHHHHHHHHhheeecccccCcchHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHHHHhHhhcCCchh
Q 037378 416 RVPQWWFLTILISAIGLAILSCEGFGKQLQLPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISELLIGYIYPGRPI 495 (741)
Q Consensus 416 ~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isqli~G~i~pg~~~ 495 (741)
|||+|||++++++++++++++|++|+++.|+|||++++|+++++++.+|.|+++|+||++||+|+++|+|.||++||||+
T Consensus 440 eVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPi 519 (761)
T KOG2262|consen 440 EVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPI 519 (761)
T ss_pred cCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCcccc
Q 037378 496 ANMVFKLYGLNIQSYALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGSPWTCP 575 (741)
Q Consensus 496 anl~f~~~~~~~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~~~tcp 575 (741)
|||+||.||+.+++||+.++||+|+|||||+|||.||.+|++||+++++|+.+|..|++.+++|+|+.+ +++.||||
T Consensus 520 An~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TCP 596 (761)
T KOG2262|consen 520 ANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTCP 596 (761)
T ss_pred HHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred hhhHHHHHHhhhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCccccccccchhHHHhhcccccccchhhh
Q 037378 576 GMNYTYAASIVWGAIGPQRIYFPNGQYSKQFYFFLIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTSSLPVYGVANF 655 (741)
Q Consensus 576 ~~~~~~~~sv~wg~igp~~~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~~ 655 (741)
..+++|++||+||++||+|+|+.++.|+.+.|+|++|+++|+++|+++|++|+++|.+++|+|+++.|.+.+||++..|+
T Consensus 597 ~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny 676 (761)
T KOG2262|consen 597 SDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNY 676 (761)
T ss_pred CCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhHHHHHHHHHHHhcCCCCCcccccCCCCC-CCCCCCCCCCCccc
Q 037378 656 WSWTIVRILYNLVVYRNYKDWWASYNYVLAYGLDMRVAFLSLLTSLTLGLNGIYGVDWWGLDIGD-HCPLAQCPTAPGIS 734 (741)
Q Consensus 656 ~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~~i~glii~~~~~~~g~~~~~WwG~n~~~-~c~~~~~~~~~~~~ 734 (741)
++|+++|+++++++|||++.||+||||++|||||||.++++++++||+|++|. ..+||| |+++ +|+..+|+.+++..
T Consensus 677 ~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~-~~~WWG-n~~~~~c~~a~cp~~~~v~ 754 (761)
T KOG2262|consen 677 TSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGI-SLNWWG-NTVSAGCDLAGCPTAKGVV 754 (761)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCC-cccccc-CcCCCCCCccCCCcCCeee
Confidence 99999999999999999999999999999999999999999999999999999 888999 8875 99999999999999
Q ss_pred cCCCCCC
Q 037378 735 VEGCPTF 741 (741)
Q Consensus 735 ~~~~~~~ 741 (741)
+++||.|
T Consensus 755 ~~~~~~f 761 (761)
T KOG2262|consen 755 VSGCPVF 761 (761)
T ss_pred cCCCCCC
Confidence 9999986
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=3.1e-169 Score=1454.19 Aligned_cols=659 Identities=31% Similarity=0.653 Sum_probs=638.4
Q ss_pred cCCCchhhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCCCc
Q 037378 35 INDSPIEQVRLTIPITDDPTLPTFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSKPV 114 (741)
Q Consensus 35 ~~~sp~~evr~~v~~~ddp~~p~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~~~ 114 (741)
||||||||||++||++|||++|++|+|+|++|++++++++++||+|++|+|+++++++++||++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccCCCCCCccchhhhhhhhcccccchhhhhHHHHhHHhhcCCccHHHHHHHHHHHhhhhhhhhhhccccee
Q 037378 115 KVPGTKWTFSMNPGPFNIKEHVVVSILATTGLEVPFGTTVMGIRRIFYHKYLNFWIGLLMIMTSQILGYGFAGIFMKFLV 194 (741)
Q Consensus 115 ~~~g~~~~~~lNPgpf~~kE~~~i~imAsaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~qllG~g~Ag~lR~~lV 194 (741)
+++| ++|+|||||||+|||+++|+||+++.+.+++++++.+|++||++++++++++++++++|++|+++||++||++|
T Consensus 81 ~~~g--~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV 158 (681)
T TIGR00727 81 TIRG--RKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVV 158 (681)
T ss_pred cccc--ceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEe
Confidence 9876 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc------------cccccccCC--ccccchHHHHHHHHHHHHHHhhcccchhhhcccccceeeeccCccceeeec
Q 037378 195 YNPYMW------------SLHEVEERP--KRGITKLQIFVMATVASFAYASLPGYLFPSLGALSVICWFWKNSVIAQQIG 260 (741)
Q Consensus 195 ~p~~l~------------aLh~~~~~~--~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~~~~~wi~p~n~~~~~i~ 260 (741)
+|++|+ +||+++++. .|++||+|+|+++|+++|+|+|+|+|+||+|+.|||.|||+|+|++++++|
T Consensus 159 ~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~ 238 (681)
T TIGR00727 159 YPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIF 238 (681)
T ss_pred ccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhh
Confidence 999997 999765432 356899999999999999999999999999999999999999999999999
Q ss_pred cccccccccc-ccccccchhhccchhHHH----HHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCccccccCCceeec
Q 037378 261 SGRHGLGVGS-FSLDLSAISGALVFPLST----VVSLSIGTLLLLYVINPIAYWTNSNNARLFPFSSTQLFNQSGQVYNV 335 (741)
Q Consensus 261 G~~~GlGl~~-~tfDWs~i~~~~g~pl~~----~~~~~~G~vl~~~ii~P~~~~~n~~~~~~~P~~s~~lfd~~g~~Yn~ 335 (741)
|+.+|||++| +|||||+|+++.|+||++ ++|+++|.+++++++.|++||+|.|+++|+|++|+++||++|++||+
T Consensus 239 g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~v 318 (681)
T TIGR00727 239 GGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNV 318 (681)
T ss_pred ccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCcccc
Confidence 9999999999 899999997677776665 99999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCcccHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhccc-c
Q 037378 336 SKVINDNDLTFNQKAYEEYSKLYMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRLMK-Y 414 (741)
Q Consensus 336 s~i~~~~~~~~~~~~y~~y~~~~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~lm~-y 414 (741)
++|+| +|+++|+|||+||||+|++++++++||++||+++++++|++|+|||||++++|+ ++++|+|.|+|| |
T Consensus 319 s~il~-~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~------~~~~D~h~rlM~~Y 391 (681)
T TIGR00727 319 TEILD-KDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD------DDYPDPHSNLMKAY 391 (681)
T ss_pred ceeeC-CCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc------CCCCChhHHHhhcC
Confidence 99999 999999999999999999999999999999999999999999999999999974 356899999999 9
Q ss_pred CCCChHHHHHHHHHHHHHHhheeecccccCcchHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHHHHhHhhcCCch
Q 037378 415 KRVPQWWFLTILISAIGLAILSCEGFGKQLQLPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISELLIGYIYPGRP 494 (741)
Q Consensus 415 ~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isqli~G~i~pg~~ 494 (741)
||||+|||++++++++++++++++.+ ++|+|||++++|+++++++.+|.++++|+||+++++|+++|+|+|++.||||
T Consensus 392 ~evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p 469 (681)
T TIGR00727 392 KEVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRP 469 (681)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCc
Confidence 99999999999999999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCccc
Q 037378 495 IANMVFKLYGLNIQSYALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGSPWTC 574 (741)
Q Consensus 495 ~anl~f~~~~~~~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~~~tc 574 (741)
++||+||++++++.+||.+++||||+|||||+|||+||.+|++||++|++|+++|++|++++++|+|+++ ++++|||
T Consensus 470 ~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftc 546 (681)
T TIGR00727 470 LAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTC 546 (681)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred chhhHHHHHHhhhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCccccccccchhHHHhhcccccccchhh
Q 037378 575 PGMNYTYAASIVWGAIGPQRIYFPNGQYSKQFYFFLIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTSSLPVYGVAN 654 (741)
Q Consensus 575 p~~~~~~~~sv~wg~igp~~~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~ 654 (741)
|+.++++++||+||++||+|+|++|++|+.++|+|++|+++|++.|+++|++||+ ++|++|.|+++.|.+++||+++.|
T Consensus 547 p~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~n 625 (681)
T TIGR00727 547 PNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPYN 625 (681)
T ss_pred CCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999976 789999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCccccchhhhhhhhhhhhhhHHHHHHHHHHHhcCCC
Q 037378 655 FWSWTIVRILYNLVVYRNYKDWWASYNYVLAYGLDMRVAFLSLLTSLTLGLNGI 708 (741)
Q Consensus 655 ~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaAgL~aG~~i~glii~~~~~~~g~ 708 (741)
++++.++|+++|+|+||||++||+||||++|||||+|++++++++||+++++|+
T Consensus 626 ~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 626 YMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999876
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=4.6e-120 Score=1063.70 Aligned_cols=622 Identities=34% Similarity=0.652 Sum_probs=563.1
Q ss_pred hhhhccCCCCCCCCCCccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCCCcccCCcc
Q 037378 41 EQVRLTIPITDDPTLPTFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSKPVKVPGTK 120 (741)
Q Consensus 41 ~evr~~v~~~ddp~~p~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~~~~~~g~~ 120 (741)
+|||+ +|++|||++|++|+|++++|++++++++++|+||++|+|+++.+++++|+++|++||+++|++|+|+ +
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~------~ 73 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE------G 73 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc------c
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999985 3
Q ss_pred cccccCCCCCCccchhhhhhhhcccccchhhhhHHHHhHHhhcCCccHHHHHHHHHHHhh--hhhhhhhhcccceeeccc
Q 037378 121 WTFSMNPGPFNIKEHVVVSILATTGLEVPFGTTVMGIRRIFYHKYLNFWIGLLMIMTSQI--LGYGFAGIFMKFLVYNPY 198 (741)
Q Consensus 121 ~~~~lNPgpf~~kE~~~i~imAsaa~~~~~a~~~i~~~~~~y~~~~~~~~~il~~ls~ql--lG~g~Ag~lR~~lV~p~~ 198 (741)
+||+|||||||+|||+++|+|||++++.+++++.+.+|..||+++.++++++++++++|+ +|+++|+++||++|+|++
T Consensus 74 ~~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~ 153 (654)
T TIGR00728 74 WKFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAK 153 (654)
T ss_pred cceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCccc
Confidence 789999999999999999999999999888888888999999999999999999999988 999999999999999999
Q ss_pred cc------------cccccccCC-ccccchHHHHHHHHHHHHHHhhcccchhhhcccccceeeeccCccceeeecccccc
Q 037378 199 MW------------SLHEVEERP-KRGITKLQIFVMATVASFAYASLPGYLFPSLGALSVICWFWKNSVIAQQIGSGRHG 265 (741)
Q Consensus 199 l~------------aLh~~~~~~-~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~~~~~wi~p~n~~~~~i~G~~~G 265 (741)
|+ +||++.+.+ +++++| +.... |.++|+.+..++|+||+.|++..++ +|| |
T Consensus 154 l~~P~~la~a~l~~al~~~~~~~~g~~~~r--~l~~~----------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 154 LPWPSGLATAELFKALHGKFHTANGDTIAK--NLLRV----------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccCCcccHHHHHHHHhhhccCccCCCccch--hHHHh----------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 96 665543322 223343 22111 5566667777889999999887775 444 7
Q ss_pred cccccccccccchhhccchhHHH----HHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCccccccCCceeec-eeeec
Q 037378 266 LGVGSFSLDLSAISGALVFPLST----VVSLSIGTLLLLYVINPIAYWTNSNNARLFPFSSTQLFNQSGQVYNV-SKVIN 340 (741)
Q Consensus 266 lGl~~~tfDWs~i~~~~g~pl~~----~~~~~~G~vl~~~ii~P~~~~~n~~~~~~~P~~s~~lfd~~g~~Yn~-s~i~~ 340 (741)
+|+++++|||+++++++|+|+++ ++|+++|++++|+++.|++||+|+|+++++|++|++.+|++|.+|+. ++|++
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~ 297 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVV 297 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEe
Confidence 88999999999986678887776 99999999999999999999999999999999999999999999999 99998
Q ss_pred CCC-CcccHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhcc-------
Q 037378 341 DND-LTFNQKAYEEYSKLYMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRLM------- 412 (741)
Q Consensus 341 ~~~-~~~~~~~y~~y~~~~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~lm------- 412 (741)
++ .++|+++|++|+++|+++++ |+.+|+.++++++|.+++|+|++++.+|+.. ++.+|.|.|++
T Consensus 298 -~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~ 369 (654)
T TIGR00728 298 -DGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHY----KLGRDDHVRLLSRDEDLK 369 (654)
T ss_pred -CCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh----hccCCCChHHHhhccccc
Confidence 55 79999999999999999999 8999999999999999999999999988763 22334444444
Q ss_pred -c-cCCCChHHHHHHHHHHHHHHhheeecccccCcchHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHHHHhHhhc
Q 037378 413 -K-YKRVPQWWFLTILISAIGLAILSCEGFGKQLQLPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISELLIGYIY 490 (741)
Q Consensus 413 -~-y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isqli~G~i~ 490 (741)
+ |+|||+|||+.+++++++++++++++++..+++|||++++++++++++++|+++++|+||...++|+++|+++|++.
T Consensus 370 ~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~ 449 (654)
T TIGR00728 370 VKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYIL 449 (654)
T ss_pred ccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeec
Confidence 4 59999999999999999999999888865578999999999999999999999999999877899999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 037378 491 PGRPIANMVFKLYGLNIQSYALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGS 570 (741)
Q Consensus 491 pg~~~anl~f~~~~~~~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~ 570 (741)
||+|++||+++++++++++||.|++||||+|||+|+|||+||.+|++|+++|++|+++|++|+.+++++ +++
T Consensus 450 pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~ 521 (654)
T TIGR00728 450 PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNN 521 (654)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999887763 557
Q ss_pred CcccchhhHHHHHHhhhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCccccccccchhHHHhhccccccc
Q 037378 571 PWTCPGMNYTYAASIVWGAIGPQRIYFPNGQYSKQFYFFLIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTSSLPVY 650 (741)
Q Consensus 571 ~~tcp~~~~~~~~sv~wg~igp~~~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~ 650 (741)
+|+||.+++++++|++||++||+ +|+++++|+.+.|++++| +++++.++++|++|| +.+++|+|+++.+...+||.
T Consensus 522 ~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~ 597 (654)
T TIGR00728 522 NFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPA 597 (654)
T ss_pred CccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCc
Confidence 89999999999999999999999 999989999999999999 899999999999986 67899999987777788888
Q ss_pred chhhhHHHHHHHHHHHHHHHhcCcccc--chhhhhhhhhhhhhhHHHHHHHHHHHhc
Q 037378 651 GVANFWSWTIVRILYNLVVYRNYKDWW--ASYNYVLAYGLDMRVAFLSLLTSLTLGL 705 (741)
Q Consensus 651 ~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kynyvlaAgL~aG~~i~glii~~~~~~ 705 (741)
.+.++.++.++|.++++++|||+++|| +||||++||||||||+|+++++||++++
T Consensus 598 ~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 598 TAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 888888999999999999999998887 9999999999999999999999999875
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.9e-113 Score=1003.86 Aligned_cols=599 Identities=36% Similarity=0.655 Sum_probs=553.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCCCcccCCcccccccCCCCCCccchh
Q 037378 57 TFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSKPVKVPGTKWTFSMNPGPFNIKEHV 136 (741)
Q Consensus 57 ~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~ 136 (741)
|+|+|++++|++++++++++|+||++|+|+++.+++++||++|+++|.++|. ++++++||||||+|||+
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~-----------~~~~~ln~gp~~~kE~~ 69 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI-----------GWRFSLNPGPFTIKENN 69 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh-----------ccccccCCCCCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 25677999999999999
Q ss_pred hhhhhhcccccchhhhhHHHHhH--HhhcCCccHHHHHHHHHHHhhhhhhhhhhcccceeeccccc------------cc
Q 037378 137 VVSILATTGLEVPFGTTVMGIRR--IFYHKYLNFWIGLLMIMTSQILGYGFAGIFMKFLVYNPYMW------------SL 202 (741)
Q Consensus 137 ~i~imAsaa~~~~~a~~~i~~~~--~~y~~~~~~~~~il~~ls~qllG~g~Ag~lR~~lV~p~~l~------------aL 202 (741)
++|+|||+++++++++++++++| .||++++++++++++++++|++|+++|+++||++|+|++|+ +|
T Consensus 70 ~vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~al 149 (624)
T PF03169_consen 70 LVQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINAL 149 (624)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHh
Confidence 99999999999999999999966 48899999999999999999999999999999999999996 88
Q ss_pred cccccCCccccchHHHHHHHHHHHHHHhhcccchhhhcccccceeeeccCccceeeecccccccccccccccccchhhcc
Q 037378 203 HEVEERPKRGITKLQIFVMATVASFAYASLPGYLFPSLGALSVICWFWKNSVIAQQIGSGRHGLGVGSFSLDLSAISGAL 282 (741)
Q Consensus 203 h~~~~~~~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDWs~i~~~~ 282 (741)
|++++ .+.+++|+|+|.++|.++++|+|+|+|++|+|+.++|+||++|+|+..++++|+.+ ++||||++ ++
T Consensus 150 h~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~~ 220 (624)
T PF03169_consen 150 HSGGG-WREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--LI 220 (624)
T ss_pred ccCcc-chhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--hc
Confidence 98762 23457999999999999999999999999999999999999999999999988754 89999996 46
Q ss_pred chhHHH----HHHHHHHHHHHHHHHHHHHHhh-cCCcCCCCCCCCccccccCCceeeceeeecCCCCcccHHHHhhcCcc
Q 037378 283 VFPLST----VVSLSIGTLLLLYVINPIAYWT-NSNNARLFPFSSTQLFNQSGQVYNVSKVINDNDLTFNQKAYEEYSKL 357 (741)
Q Consensus 283 g~pl~~----~~~~~~G~vl~~~ii~P~~~~~-n~~~~~~~P~~s~~lfd~~g~~Yn~s~i~~~~~~~~~~~~y~~y~~~ 357 (741)
|+|+++ ++|+++|.+++|+++.|++||+ |.|++.++|++|+++||++|+ +|.+.|+++|++|+++
T Consensus 221 g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~----------~~~~~~~~~~~~~g~~ 290 (624)
T PF03169_consen 221 GSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS----------SDGTLNWTKYIGYGPM 290 (624)
T ss_pred CCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc----------cccccCHHHHHHHHHH
Confidence 777776 9999999999999999999997 999999999999999999986 4668899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhc---cCCCCCchhhhhccc-cCCCChHHHHHHHHHHHHHH
Q 037378 358 YMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYD---SSRKSTEDVHNRLMK-YKRVPQWWFLTILISAIGLA 433 (741)
Q Consensus 358 ~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~---~~~~~~~D~h~~lm~-y~~vP~ww~~~~~~~s~~~~ 433 (741)
+.+..+.++|+..|+.+++.++|.+++|+|++++.+|+..+ +.++++||+|+++|| |+|+|+|||+.+++++++++
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~ 370 (624)
T PF03169_consen 291 YGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLA 370 (624)
T ss_pred HHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988865422 224567899999999 99999999999999999999
Q ss_pred hheeecccccCcchHHHHHHHHHHHHHHHhhheeeEEeeCCcc--hhHHHHHHHhHhhcCCchhHHHHHHHHHHHHHHHH
Q 037378 434 ILSCEGFGKQLQLPYWGILLACLLALIFILPVGVLQATTGQTL--SLNVISELLIGYIYPGRPIANMVFKLYGLNIQSYA 511 (741)
Q Consensus 434 i~~~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p--~l~~isqli~G~i~pg~~~anl~f~~~~~~~~~qA 511 (741)
+++++.++.++++|+|+.++++++++++++|.++++|+||++| ++|+++|+++|++.||+|++||+++++++++++||
T Consensus 371 ~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa 450 (624)
T PF03169_consen 371 IIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQA 450 (624)
T ss_pred HHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999888655899999999999999999999999999999977 89999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhhHHHHHHhhhhhcc
Q 037378 512 LEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGSPWTCPGMNYTYAASIVWGAIG 591 (741)
Q Consensus 512 ~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~~~tcp~~~~~~~~sv~wg~ig 591 (741)
+|++||||+|||+|+|||+||.+|++|+++|++|++++++++ +..+.|.++ +++.++||..|+.++++++||++|
T Consensus 451 ~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~ 525 (624)
T PF03169_consen 451 GDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIG 525 (624)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999877 567788766 556899999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCccccccccchhHHHhhcccccccchhhhHHHHHHHHHHHHHHHh
Q 037378 592 PQRIYFPNGQYSKQFYFFLIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTSSLPVYGVANFWSWTIVRILYNLVVYR 671 (741)
Q Consensus 592 p~~~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr 671 (741)
|+| +.+|..++|++++|++++++.++++|++|+. +.+.|...+++..+.++++++++|+++++++||
T Consensus 526 ~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~ 592 (624)
T PF03169_consen 526 PQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------LAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRR 592 (624)
T ss_pred Ccc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------heeeecccccccchhHHHHHHHHHHHHHHHhhh
Confidence 877 6899999999999999999999999888842 344555556667778899999999999999999
Q ss_pred cCccccchhhhhhhhhhhhhhHHHHHHHHHHH
Q 037378 672 NYKDWWASYNYVLAYGLDMRVAFLSLLTSLTL 703 (741)
Q Consensus 672 ~~~~w~~kynyvlaAgL~aG~~i~glii~~~~ 703 (741)
|+++||+||||++|||||+||+++++++++++
T Consensus 593 ~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 593 RYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred cchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998764
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1e-63 Score=573.74 Aligned_cols=536 Identities=13% Similarity=0.124 Sum_probs=398.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCCCcccCCcccccccCCCCCCccchh
Q 037378 57 TFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSKPVKVPGTKWTFSMNPGPFNIKEHV 136 (741)
Q Consensus 57 ~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~~~~~~g~~~~~~lNPgpf~~kE~~ 136 (741)
|+|+|++++|++++++++++|.|++||.|+++.+++++++++|.+.|.+. ++|++|||
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~----------------------~~t~~Enn 58 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR----------------------DRSILENN 58 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc----------------------cCChhHHH
Confidence 58999999999999999999999999999999999999999999999772 27999999
Q ss_pred hhhhhhcccccchhhhhHHHHhHHhhc----CCccHHHHHHHHHHHhhhhhhhhhhcccceeeccccc---------ccc
Q 037378 137 VVSILATTGLEVPFGTTVMGIRRIFYH----KYLNFWIGLLMIMTSQILGYGFAGIFMKFLVYNPYMW---------SLH 203 (741)
Q Consensus 137 ~i~imAsaa~~~~~a~~~i~~~~~~y~----~~~~~~~~il~~ls~qllG~g~Ag~lR~~lV~p~~l~---------aLh 203 (741)
++|++|+++++.+ ++++++|+++. ++++++..++++++.+++|+.|+.||||++|.++++. ++.
T Consensus 59 ivQT~asA~~~~a---g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~ 135 (591)
T TIGR00733 59 MVQTAASAAGTLS---SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLK 135 (591)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Confidence 9999999998743 58899999764 4578999999999999999999999999999999986 344
Q ss_pred ccccCCccccchHHHHHHHHHHHHHHhhcccchhhhcccccceeeeccCccceeeecccccccccccccccccchhhccc
Q 037378 204 EVEERPKRGITKLQIFVMATVASFAYASLPGYLFPSLGALSVICWFWKNSVIAQQIGSGRHGLGVGSFSLDLSAISGALV 283 (741)
Q Consensus 204 ~~~~~~~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDWs~i~~~~g 283 (741)
..+++ + +++|.|.++.++..+++|.++++ ++.+ |.+...... .|.+...+++|||+ +++|
T Consensus 136 ~g~~g-~-~~~~~~~l~~g~~~s~~~~~~~~-----~~~~-------~~~~~~~~~----~g~~~~~~~~~~Sp--alvG 195 (591)
T TIGR00733 136 AGDKA-R-NGTGAKPIAYGGILASIYAFLGS-----LRVW-------SGTLSAAKL----VGRRALYFGSDLSL--ALIG 195 (591)
T ss_pred ccccc-c-chhhHHHHHHHHHHHHHHHHHHH-----hccC-------CchHHHHHh----cCCcceEEEecccH--HHHc
Confidence 33322 1 35788999999999999998842 2222 211100000 01112224689998 7899
Q ss_pred hhHHH----HHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCccccccCCceeeceeeecCCCCcccHHHHhhc---Cc
Q 037378 284 FPLST----VVSLSIGTLLLLYVINPIAYWTNSNNARLFPFSSTQLFNQSGQVYNVSKVINDNDLTFNQKAYEEY---SK 356 (741)
Q Consensus 284 ~pl~~----~~~~~~G~vl~~~ii~P~~~~~n~~~~~~~P~~s~~lfd~~g~~Yn~s~i~~~~~~~~~~~~y~~y---~~ 356 (741)
.|+++ .+++++|++++|+++.|++..+++. ..+.+ +++.+.+. .+
T Consensus 196 ~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~-~~~~~---------------------------~~~~~~~vw~~~v 247 (591)
T TIGR00733 196 VGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGS-PGDLS---------------------------ALDLAWTIWSTKV 247 (591)
T ss_pred CceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcc---------------------------HHHHHHHHHhccc
Confidence 98887 8999999999999999999865432 10000 01111112 36
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhccc-cCCCChHHHHHHHHHHHHHHhh
Q 037378 357 LYMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRLMK-YKRVPQWWFLTILISAIGLAIL 435 (741)
Q Consensus 357 ~~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~lm~-y~~vP~ww~~~~~~~s~~~~i~ 435 (741)
+|++++.|+..+. +.+++..|.+++.+|+..+..++++++ + ...| .+|+|.|+...+.++.+ +.
T Consensus 248 R~iGvg~m~~~gl----------~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~r~~~dip~~~v~~~~~~~~-~~-- 312 (591)
T TIGR00733 248 RYIGVGAIVVAAL----------WTLLKLRGPIARGIKAGLEAARRRQAG-E-AVLRTEEDLPINIVLTLVALFV-IP-- 312 (591)
T ss_pred chhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccc-c-ccccccccccHHHHHHHHHHHH-HH--
Confidence 7799998876542 334566777777777654321111111 1 1234 78999997554433322 22
Q ss_pred eeecccccCcch--------H-HHHHHHHHHHHHHHhhheeeEEe--eCCcc--hhHHHHHHHhHhhc------------
Q 037378 436 SCEGFGKQLQLP--------Y-WGILLACLLALIFILPVGVLQAT--TGQTL--SLNVISELLIGYIY------------ 490 (741)
Q Consensus 436 ~~~~~~~~~~lp--------~-w~~ilal~la~v~~i~~~~~~g~--Tg~~p--~l~~isqli~G~i~------------ 490 (741)
..++ .++.| + .+.+++++++++++..++|+.|+ ||.|| ++++++|++++.+.
T Consensus 313 -~~~~--~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~ 389 (591)
T TIGR00733 313 -LADF--LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQI 389 (591)
T ss_pred -HHHH--hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCcccc
Confidence 1111 23333 3 57789999999999999999999 77788 79999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 037378 491 PGRPIANMVFKLYGLNIQSYALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGS 570 (741)
Q Consensus 491 pg~~~anl~f~~~~~~~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~ 570 (741)
|+...+|++.+++.+.+++||.|++||||+||++|++||+||++|++|+++|+++++.+++.+.+++ ++..+.-.++++
T Consensus 390 ~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~~~~ 468 (591)
T TIGR00733 390 PELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAKGEN 468 (591)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCCCcc
Confidence 3556789999999999999999999999999999999999999999999999999999997665554 443211112456
Q ss_pred CcccchhhHHHHHHhhhhhcccccccCCCCCchhHHHHH-HHHHHHHHHHHHHhhhcCccccccccchhHHHhhcccccc
Q 037378 571 PWTCPGMNYTYAASIVWGAIGPQRIYFPNGQYSKQFYFF-LIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTSSLPV 649 (741)
Q Consensus 571 ~~tcp~~~~~~~~sv~wg~igp~~~f~~~~~y~~l~~~f-liG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~~~~p 649 (741)
.+++|++..+. ++.-|+.+ +. ++|.+ .+|+++.+++.++++..++++ +++..|.+.+|+++|.|
T Consensus 469 ~l~APqA~l~~--ava~gi~~------~~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig~yLP 533 (591)
T TIGR00733 469 ALPAPQAFLMA--AVTEGVFT------GT-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVGIYLP 533 (591)
T ss_pred ccCCCHHHHHH--HHHhhhcC------CC-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHHhhcc
Confidence 79999887775 44445543 22 45643 466777777777765555332 34456888999999987
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCccc------cchhhhhhhhhhhhhhHHHHHHHHHH
Q 037378 650 YGVANFWSWTIVRILYNLVVYRNYKDW------WASYNYVLAYGLDMRVAFLSLLTSLT 702 (741)
Q Consensus 650 ~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~kynyvlaAgL~aG~~i~glii~~~ 702 (741)
. +++..+++|.+..++|+||+++- -++|.+++||||++||+++|++++..
T Consensus 534 ~---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~ 589 (591)
T TIGR00733 534 L---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAI 589 (591)
T ss_pred h---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHH
Confidence 5 36889999999999999976531 14678999999999999999998653
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-49 Score=436.80 Aligned_cols=556 Identities=16% Similarity=0.154 Sum_probs=395.5
Q ss_pred CCCCccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHHHhhcCCCCcccCCcccccccCCCCCCc
Q 037378 53 PTLPTFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFMAATLPSKPVKVPGTKWTFSMNPGPFNI 132 (741)
Q Consensus 53 p~~p~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~la~~lP~~~~~~~g~~~~~~lNPgpf~~ 132 (741)
..+|++|+|++++|+++++++.++|.|+|+|.|.++.++++++++|+.+.|++ .++|+
T Consensus 10 ~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~----------------------~~~si 67 (624)
T COG1297 10 AFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAF----------------------KGSSI 67 (624)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHh----------------------Cccch
Confidence 47899999999999999999999999999999999999999999999999988 24899
Q ss_pred cchhhhhhhhcccccchhhhhHHHHhHH----hhcCCccHHHHHHHHHHHhhhhhhhhhhcccceeeccccc--------
Q 037378 133 KEHVVVSILATTGLEVPFGTTVMGIRRI----FYHKYLNFWIGLLMIMTSQILGYGFAGIFMKFLVYNPYMW-------- 200 (741)
Q Consensus 133 kE~~~i~imAsaa~~~~~a~~~i~~~~~----~y~~~~~~~~~il~~ls~qllG~g~Ag~lR~~lV~p~~l~-------- 200 (741)
.|||++|++||++++ .+.++|+++|. .|+++++++....++....++|+.|+.||||.+|.+++++
T Consensus 68 lENNmVQT~ASAagt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaA 145 (624)
T COG1297 68 LENNMVQTQASAAGT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAA 145 (624)
T ss_pred hhhHHHHHHHhhhcc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHH
Confidence 999999999999988 55678888885 4679999999999999999999999999999999999996
Q ss_pred -cccccccCCccccchHHHHHHHHHHHHHHhhcccchhhhcccc--cceeeeccCccceeeecccccccccccccccccc
Q 037378 201 -SLHEVEERPKRGITKLQIFVMATVASFAYASLPGYLFPSLGAL--SVICWFWKNSVIAQQIGSGRHGLGVGSFSLDLSA 277 (741)
Q Consensus 201 -aLh~~~~~~~~~~sr~k~f~~~f~~~~~~~~~P~~i~p~L~~~--~~~~wi~p~n~~~~~i~G~~~GlGl~~~tfDWs~ 277 (741)
.|...+++++++ +..|....+...+.+|.++.+- ++.+ ++-+|.. .+. +..-+..|.|+
T Consensus 146 EvL~~g~~~~gd~-~g~~~i~~g~~~~~~~~~l~~g----~~~~~~~~~~~~~----------~~~---~~~~lg~~~S~ 207 (624)
T COG1297 146 EVLKAGNQREGDA-SGIKLIALGGALAALYSLLASG----LRVIASSLSAAFS----------VGR---AAFALGLGLSL 207 (624)
T ss_pred HHHHhcCCCCCCc-ccchhhhhhhHHHHHHHHHhcc----ceeehhhHHHHHH----------hcc---hhhhhcccccH
Confidence 444444222222 6778888899999999888753 1111 1112221 111 11122344555
Q ss_pred hhhccchhHHH----HHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCccccccCCceeeceeeecCCCCcccHHHHhh
Q 037378 278 ISGALVFPLST----VVSLSIGTLLLLYVINPIAYWTNSNNARLFPFSSTQLFNQSGQVYNVSKVINDNDLTFNQKAYEE 353 (741)
Q Consensus 278 i~~~~g~pl~~----~~~~~~G~vl~~~ii~P~~~~~n~~~~~~~P~~s~~lfd~~g~~Yn~s~i~~~~~~~~~~~~y~~ 353 (741)
+++|.+.++ .+.+++|.+++|++..|++-+...- | ++..+-. .-++-|++
T Consensus 208 --AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~~~~-----p--~~~~~~~-----------------~a~~vW~s 261 (624)
T COG1297 208 --ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLIVPG-----P--SDQEAGV-----------------QAWKVWSS 261 (624)
T ss_pred --HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhcccC-----C--CchhHHH-----------------HHHHHhhh
Confidence 466766555 7889999999999999987554331 1 1110100 01111111
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhccc-cCCCChHHHHHHHHHHHHH
Q 037378 354 YSKLYMSVLFLFSVGFDFACLSASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRLMK-YKRVPQWWFLTILISAIGL 432 (741)
Q Consensus 354 y~~~~~~~~~~l~~~~~fa~~~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~lm~-y~~vP~ww~~~~~~~s~~~ 432 (741)
--+|++++.+. ..-+|+++...|.+.+..|+.+++.+.+++.. ...| ++|+|.-|-...++...+-
T Consensus 262 -~VrfIGaG~i~----------i~~~wtl~~l~~pi~~gi~~~f~~~r~~~~~~--~~~rte~Dl~~~~~~~~~~~~~v~ 328 (624)
T COG1297 262 -KVRFIGAGAIA----------IAAIWTLISLLGPILRGIKATFESARGRRRAG--AVSRTERDLPPKLVLLVLLATVVA 328 (624)
T ss_pred -eeEEeehhHHH----------HHHHHHHHHHHhHHHHHHHHHHHHhhcccccc--cccchhhcCChhhHHHHHHHHHHH
Confidence 13678887532 33456677777877777776654322111111 1114 7899987766665554443
Q ss_pred Hhheeeccccc-------CcchHHHHHHHHHHHHHHHhhheeeEEeeCCc--c--hhHHHHHHHhHhhc-----------
Q 037378 433 AILSCEGFGKQ-------LQLPYWGILLACLLALIFILPVGVLQATTGQT--L--SLNVISELLIGYIY----------- 490 (741)
Q Consensus 433 ~i~~~~~~~~~-------~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~--p--~l~~isqli~G~i~----------- 490 (741)
.++...+.-.+ ..+-.-+.+++++++|.++-.+|++.|..|.+ | +++++++++.+.++
T Consensus 329 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~ 408 (624)
T COG1297 329 LGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFI 408 (624)
T ss_pred HHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhcccccccc
Confidence 33322222101 12235677888889999999999999998866 4 78888777764433
Q ss_pred -CC-c---hhHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 037378 491 -PG-R---PIANMVFKLYGLNIQSYALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPER 565 (741)
Q Consensus 491 -pg-~---~~anl~f~~~~~~~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l 565 (741)
|. + ...+++.+++...++.++.|++||||+||+++++||+|+.+|++|+++++++...|++.+.+.| ++..+..
T Consensus 409 ~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aY-gf~ga~~ 487 (624)
T COG1297 409 DPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAY-GFAGAPP 487 (624)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHh-CcCCCCC
Confidence 22 1 2567777999999999999999999999999999999999999999999999999998665544 4432210
Q ss_pred CCCCCCcccchhhHHHHHHhhhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCccccccccchhHHHhhcc
Q 037378 566 LPKGSPWTCPGMNYTYAASIVWGAIGPQRIYFPNGQYSKQFYFFLIGLISPLIIWGASKFLPEKEWIKNINISNLFGGTS 645 (741)
Q Consensus 566 ~~~~~~~tcp~~~~~~~~sv~wg~igp~~~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~~~~~~~in~p~~~~g~~ 645 (741)
.+....++| |....+++. +.+|.....|..+..+..+|+.+..+.+.+++++ .+..+|++++|++
T Consensus 488 -r~~~~l~ap--qa~lma~ia------~Gvf~~~lew~mi~~g~~~gi~lI~id~~l~~~~------~~~~lpvlAvGvG 552 (624)
T COG1297 488 -RQGMDLAAP--QATLMATIA------KGVFTGNLEWSMILAGAGIGIVLIGIDERLKGRG------GKLRLPVLAVGVG 552 (624)
T ss_pred -CCCCCCcch--HHHHHHHHh------cccCCCCcchHHHHHHHhHhheeeeccHHHhcCC------ccccccceeeeee
Confidence 122225555 555556554 4457777778877777778887777777776532 2234789999999
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHhcCc-------cccchhhhhhhhhhhhhhHHHHHHHHHHHhcCCC
Q 037378 646 SLPVYGVANFWSWTIVRILYNLVVYRNYK-------DWWASYNYVLAYGLDMRVAFLSLLTSLTLGLNGI 708 (741)
Q Consensus 646 ~~~p~~~~~~~~~~~vG~~~~~~~rr~~~-------~w~~kynyvlaAgL~aG~~i~glii~~~~~~~g~ 708 (741)
.|.|. ..+..+++|.+..|.+.|+.+ +--++..+++||||+.||+++++++.+..-.+|.
T Consensus 553 IylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 553 IYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred eecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 99663 346788999999988887733 2334567999999999999999999877766655
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=87.57 E-value=16 Score=43.79 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHHHHh---Hhhc----------CC--chhHHHHHHHHHHHHHH-
Q 037378 446 LPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISELLI---GYIY----------PG--RPIANMVFKLYGLNIQS- 509 (741)
Q Consensus 446 lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isqli~---G~i~----------pg--~~~anl~f~~~~~~~~~- 509 (741)
+.+-++++.++++.+++..+.+..-.+|..+..+++.|++. |-.+ || ++.-|.+....+..+.+
T Consensus 2 lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~~ 81 (624)
T PF03169_consen 2 LTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGGM 81 (624)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 44556677777777777777777777777665555555543 1111 33 45566666665555554
Q ss_pred -HHHHHHhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 037378 510 -YALEFISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATS 550 (741)
Q Consensus 510 -qA~~~~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~ 550 (741)
.+.+++.-+..=.+++ .+.-+.-|+.-++.+.++.++..
T Consensus 82 ~~a~~~i~~ipa~~~~~--~~~~~~~~~l~~~~~~~lG~~~a 121 (624)
T PF03169_consen 82 AYAAGFIAAIPALLFLG--QPFSFGYLILWTLSTQLLGYGFA 121 (624)
T ss_pred hhhhhHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhhh
Confidence 6777766655445553 33366666766666666665544
No 8
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=60.09 E-value=1.3e+02 Score=33.32 Aligned_cols=157 Identities=17% Similarity=0.273 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhHHHHHHhHhhhccCCCCCchhhhhc-cc-cCCCChHHHHHHHHHHHHHHhheeecccccCcchHHHHH
Q 037378 375 SASLSLFLLFHGREVWQQFKHEYDSSRKSTEDVHNRL-MK-YKRVPQWWFLTILISAIGLAILSCEGFGKQLQLPYWGIL 452 (741)
Q Consensus 375 ~~~i~~~~l~~~~~i~~~~k~~~~~~~~~~~D~h~~l-m~-y~~vP~ww~~~~~~~s~~~~i~~~~~~~~~~~lp~w~~i 452 (741)
.-.++..++.+++++++.+++...+ +.++..++. -+ ++.+-.+..+-.++ +++.++.+...+. -.++|. +.+
T Consensus 164 ~~~~~ff~L~d~~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~~~~y~~gq~i~-al~~gi~~~igl~-ilgvp~-all 237 (355)
T COG0628 164 VLVLLFFLLLDGERLRRKLIKLLPR---KLRKRARRILSEVNATLSGYLRGQVLV-ALIVGILTGIGLL-ILGVPY-ALL 237 (355)
T ss_pred HHHHHHHHHcCHHHHHHHHHHhCCH---HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHcccH-HHH
Confidence 3445556788889999888776421 111222222 22 45555555444333 3444433221110 123432 333
Q ss_pred HHHHHHHHHHhhheeeEEeeCCcc----hhHHHHHHHhHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhHhcCCC
Q 037378 453 LACLLALIFILPVGVLQATTGQTL----SLNVISELLIGYIYPGRPIANMVFKLYGLNIQSYAL-EFISELKMAHYMKIA 527 (741)
Q Consensus 453 lal~la~v~~i~~~~~~g~Tg~~p----~l~~isqli~G~i~pg~~~anl~f~~~~~~~~~qA~-~~~~DlK~Ghy~k~p 527 (741)
++++.++ ++.=| .+..+--.+.++...| +. -...-.++....+|-. ++++-.=+|+-+|+|
T Consensus 238 lgil~g~------------~~lIP~iG~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~ 303 (355)
T COG0628 238 LGLLAGL------------LSLIPYIGPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLH 303 (355)
T ss_pred HHHHHHH------------HHhhcccccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCC
Confidence 4433333 33334 2444444555555555 32 3333444555555544 557888899999999
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHH
Q 037378 528 PKSMFIAQITGTI----ISSLVGYATSW 551 (741)
Q Consensus 528 PR~~f~aQliGti----vg~~v~~~v~~ 551 (741)
|=..+.+.+.|.- +|.++.+.++-
T Consensus 304 p~~ilisll~g~~l~G~~G~ila~pl~~ 331 (355)
T COG0628 304 PLVILLSLLGGGSLFGFVGLILAPPLAA 331 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 45555555553
No 9
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=47.07 E-value=5.8e+02 Score=30.59 Aligned_cols=229 Identities=12% Similarity=0.064 Sum_probs=123.3
Q ss_pred chHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHH----HHhHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh---
Q 037378 446 LPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISE----LLIGYIYPGRPIANMVFKLYGLNIQSYALEFISEL--- 518 (741)
Q Consensus 446 lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isq----li~G~i~pg~~~anl~f~~~~~~~~~qA~~~~~Dl--- 518 (741)
+.+-++++.++++.+++..+.|+-=.+|.+++.++.+= .+.-.+.+.++.-|.+..+.+..+.+.++ +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55778899999999999999998888888885544443 33444445677777777666655554443 22221
Q ss_pred -hhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhhHHHHHHhhhhhcccccccC
Q 037378 519 -KMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGSPWTCPGMNYTYAASIVWGAIGPQRIYF 597 (741)
Q Consensus 519 -K~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~~~tcp~~~~~~~~sv~wg~igp~~~f~ 597 (741)
.+|+.-..|...+...=+.|.++|.+.....-+.++. + ++ .+=|...+. +-++- .|.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~---~---~~-------L~fP~G~A~--Ae~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVV---E---SK-------LPYPEGVAC--AEVLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c---CC-------CCCCCHHHH--HHHHH--cccccc--
Confidence 1232223455666666678888888888776554431 1 11 233332221 21221 121100
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcCc----------cccccccchhHHHhhcccccccchhhhHHHHHHHHHHHH
Q 037378 598 PNGQYSKQFYFFLIGLISPLIIWGASKFLPE----------KEWIKNINISNLFGGTSSLPVYGVANFWSWTIVRILYNL 667 (741)
Q Consensus 598 ~~~~y~~l~~~fliG~~~~i~~~~l~r~~p~----------~~~~~~in~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 667 (741)
.+..-..+..+++++.+..+.. . -|.+|. +.+.-.++......|.|++.+- +....+++|.++.|
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFLG-S-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-H-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHHH
Confidence 0112234445555555544331 1 122331 0011123555567889988542 34567788888765
Q ss_pred HH-----Hhc-C-c----cc------cchhhhhhhhhhhhhhHHHHHHH
Q 037378 668 VV-----YRN-Y-K----DW------WASYNYVLAYGLDMRVAFLSLLT 699 (741)
Q Consensus 668 ~~-----rr~-~-~----~w------~~kynyvlaAgL~aG~~i~glii 699 (741)
.+ +++ . + .| |.+|---++.|...+.++..++.
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 42 121 1 1 01 22111116899999999998875
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=42.39 E-value=2e+02 Score=31.00 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=30.9
Q ss_pred HHHHHhhhhhhHhcCCChHHHHHHHHHHHHH----HHHHHHHHH
Q 037378 511 ALEFISELKMAHYMKIAPKSMFIAQITGTII----SSLVGYATS 550 (741)
Q Consensus 511 A~~~~~DlK~Ghy~k~pPR~~f~aQliGtiv----g~~v~~~v~ 550 (741)
-.+.++-.=+|.-+++||=.++.+.+.|..+ |.++.+.++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777889999999999999999988754 555555544
No 11
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=34.27 E-value=1.9e+02 Score=33.48 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHHhhe-eecccccCcchHHHHHHHHHHHHHHHhhheeeEEeeCCcchhHHHHHHHhHhhcCCchh
Q 037378 417 VPQWWFLTILISAIGLAILS-CEGFGKQLQLPYWGILLACLLALIFILPVGVLQATTGQTLSLNVISELLIGYIYPGRPI 495 (741)
Q Consensus 417 vP~ww~~~~~~~s~~~~i~~-~~~~~~~~~lp~w~~ilal~la~v~~i~~~~~~g~Tg~~p~l~~isqli~G~i~pg~~~ 495 (741)
.++++|+...++.+++-+.. ... -.+..|+. --...+.++.++..+.+...++.++ +..++-.+ +-.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~---~~~~~~~~-~~~~~~fl~~~ii~~~i~~~~~~~~--~~~~~~F~------~G~ 318 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFV---IIKIKWYF-PEIAALFLIIGIIIGLIRHRSGKSP--NEIVKAFF------KGM 318 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhh---hccccccH-HHHHHHHHHHHHHHHHHHhhccCCH--hHHHHHHH------HHH
Confidence 46778888888877765542 111 12222332 2222333344444444443444443 22222222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 037378 496 ANMVFKLYGLNIQSYALEFISELK 519 (741)
Q Consensus 496 anl~f~~~~~~~~~qA~~~~~DlK 519 (741)
.+++..+....-+.-+.-+++|.|
T Consensus 319 ~~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 319 GDMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 455444444444455556666665
No 12
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=33.51 E-value=6.3e+02 Score=27.05 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhhhHhcCCChHHHHHHHHHHHH----HHHHHHHHHHH
Q 037378 497 NMVFKLYGLNIQSYAL-EFISELKMAHYMKIAPKSMFIAQITGTI----ISSLVGYATSW 551 (741)
Q Consensus 497 nl~f~~~~~~~~~qA~-~~~~DlK~Ghy~k~pPR~~f~aQliGti----vg~~v~~~v~~ 551 (741)
......+.....+|-. +.++=.=.|+-+|+||=..+.+.+.|.. +|.++.+.++.
T Consensus 258 ~~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~ 317 (327)
T PF01594_consen 258 AALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILA 317 (327)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3334445555555654 4456666799999999999999999874 45556666553
No 13
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=27.79 E-value=63 Score=22.81 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=15.9
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 037378 62 TWVLGPITCAALAFVQQF 79 (741)
Q Consensus 62 a~~lG~i~~~~~~a~n~~ 79 (741)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998864
No 14
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=27.65 E-value=2.8e+02 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 037378 528 PKSMFIAQITGT-IISSLVGYATSWWLLS 555 (741)
Q Consensus 528 PR~~f~aQliGt-ivg~~v~~~v~~~ll~ 555 (741)
...-..+|++|| ++|+++++.++.+++.
T Consensus 89 ~~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 89 LWAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred chHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 356678999999 6999999999988763
No 15
>PRK10983 putative inner membrane protein; Provisional
Probab=27.19 E-value=9.1e+02 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhhHhcCCChHHHHHHHHHHHH----HHHHHHHHHH
Q 037378 507 IQSYALEFISELKMAHYMKIAPKSMFIAQITGTI----ISSLVGYATS 550 (741)
Q Consensus 507 ~~~qA~~~~~DlK~Ghy~k~pPR~~f~aQliGti----vg~~v~~~v~ 550 (741)
...+..+.++=.=+|.-+++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777889999999999999998876 3444444444
No 16
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.53 E-value=79 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.722 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 037378 62 TWVLGPITCAALAFVQQF 79 (741)
Q Consensus 62 a~~lG~i~~~~~~a~n~~ 79 (741)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999988864
No 17
>PRK14749 hypothetical protein; Provisional
Probab=24.10 E-value=82 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHhh
Q 037378 62 TWVLGPITCAALAFVQQF 79 (741)
Q Consensus 62 a~~lG~i~~~~~~a~n~~ 79 (741)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999988864
No 18
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=20.89 E-value=2.4e+02 Score=26.03 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=36.8
Q ss_pred CCCCCCccchhhhhhhhHHHHHHHHHHhhhccccCcccchhhHHHHHHHHHHHHH
Q 037378 51 DDPTLPTFTFRTWVLGPITCAALAFVQQFFDYRQNPIAVSSSCFKMLLFVLGKFM 105 (741)
Q Consensus 51 ddp~~p~~T~Ra~~lG~i~~~~~~a~n~~f~lr~g~~~~~~~~~~il~~~~g~~l 105 (741)
|+++...-+.|+.++|.+++.+.+++.-+.-.. +..+-......++..++-...
T Consensus 6 ~~~~~~hgs~k~yviGFiLSliLT~i~F~lv~~-~~~~~~~~~~~i~~lA~vQi~ 59 (109)
T PRK10582 6 DHGGASHGSVKTYMTGFILSIILTVIPFWMVMT-GAASPAVILGTILAMAVVQIL 59 (109)
T ss_pred CCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHH
Confidence 344444679999999999999999999887764 333444444555555555444
Done!