Query 037378
Match_columns 741
No_of_seqs 166 out of 1153
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:57:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 16.4 9.3E+02 0.032 25.2 15.7 21 526-546 171-191 (340)
2 3iyz_A Aquaporin-4; water tran 12.1 4.4E+02 0.015 27.8 7.5 19 532-550 136-154 (340)
3 3h3g_B Parathyroid hormone-rel 8.3 2.7E+02 0.0093 17.8 2.4 17 515-540 4-20 (24)
4 2kog_A Vesicle-associated memb 7.0 2E+02 0.0068 25.6 2.0 16 672-687 88-103 (119)
5 2l8s_A Integrin alpha-1; trans 6.3 2.8E+02 0.0094 21.3 2.2 15 446-460 7-21 (54)
6 2ks1_B Epidermal growth factor 6.2 4E+02 0.014 19.4 3.0 17 659-675 25-41 (44)
7 4g1u_A Hemin transport system 6.2 2E+03 0.07 22.6 16.3 82 515-625 242-323 (357)
8 2l2t_A Receptor tyrosine-prote 6.2 4.1E+02 0.014 19.5 3.0 17 659-675 24-40 (44)
9 2jwa_A Receptor tyrosine-prote 6.1 3E+02 0.01 20.2 2.2 19 657-675 23-41 (44)
10 2knc_A Integrin alpha-IIB; tra 5.8 3.2E+02 0.011 21.0 2.3 8 416-423 9-16 (54)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=16.38 E-value=9.3e+02 Score=25.23 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 037378 526 IAPKSMFIAQITGTIISSLVG 546 (741)
Q Consensus 526 ~pPR~~f~aQliGtivg~~v~ 546 (741)
.++-..|..|+++|++=.++.
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~I 191 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFTI 191 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 455678889999988644443
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=12.12 E-value=4.4e+02 Score=27.76 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037378 532 FIAQITGTIISSLVGYATS 550 (741)
Q Consensus 532 f~aQliGtivg~~v~~~v~ 550 (741)
+.+|++|.++|+.+...++
T Consensus 136 iiAQ~lGA~~GA~lv~~~~ 154 (340)
T 3iyz_A 136 ITAQCLGAIIGAGILYLVT 154 (340)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5799999999998876654
No 3
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.25 E-value=2.7e+02 Score=17.77 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=13.4
Q ss_pred HhhhhhhHhcCCChHHHHHHHHHHHH
Q 037378 515 ISELKMAHYMKIAPKSMFIAQITGTI 540 (741)
Q Consensus 515 ~~DlK~Ghy~k~pPR~~f~aQliGti 540 (741)
+||+| |.+|.-++++-+
T Consensus 4 ~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp HHHHH---------HHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHHHh
Confidence 68888 888888887653
No 4
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=6.98 E-value=2e+02 Score=25.60 Aligned_cols=16 Identities=25% Similarity=0.814 Sum_probs=11.0
Q ss_pred cCccccchhhhhhhhh
Q 037378 672 NYKDWWASYNYVLAYG 687 (741)
Q Consensus 672 ~~~~w~~kynyvlaAg 687 (741)
++..||++|...+--|
T Consensus 88 ~rkmwwkn~K~~iii~ 103 (119)
T 2kog_A 88 KRKYWWKNLKMMIILG 103 (119)
T ss_dssp HHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567999998665433
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=6.29 E-value=2.8e+02 Score=21.31 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=6.8
Q ss_pred chHHHHHHHHHHHHH
Q 037378 446 LPYWGILLACLLALI 460 (741)
Q Consensus 446 lp~w~~ilal~la~v 460 (741)
+|+|-++++++.+.+
T Consensus 7 vp~WiIi~svl~GLL 21 (54)
T 2l8s_A 7 VPLWVILLSAFAGLL 21 (54)
T ss_dssp CCTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 444444444444433
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.24 E-value=4e+02 Score=19.45 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCcc
Q 037378 659 TIVRILYNLVVYRNYKD 675 (741)
Q Consensus 659 ~~vG~~~~~~~rr~~~~ 675 (741)
.+++....+|+|||+.+
T Consensus 25 ~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 25 LVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhHhh
Confidence 34556667888887654
No 7
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=6.21 E-value=2e+03 Score=22.58 Aligned_cols=82 Identities=13% Similarity=-0.066 Sum_probs=45.4
Q ss_pred HhhhhhhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCcccchhhHHHHHHhhhhhccccc
Q 037378 515 ISELKMAHYMKIAPKSMFIAQITGTIISSLVGYATSWWLLSSVENICVPERLPKGSPWTCPGMNYTYAASIVWGAIGPQR 594 (741)
Q Consensus 515 ~~DlK~Ghy~k~pPR~~f~aQliGtivg~~v~~~v~~~ll~~~~~~~~~~l~~~~~~~tcp~~~~~~~~sv~wg~igp~~ 594 (741)
.-|=...+-+|+++|..-..-++-+.+-+.+.+.+. ..+.=+ ..-.|... ++
T Consensus 242 ~lGe~~A~sLGv~v~~~r~~~l~l~all~a~ava~v----G~I~FV----------GLivPhia--------------R~ 293 (357)
T 4g1u_A 242 QLGDEEAHYLGVNVRQAKLRLLLLSAILIGAAVAVS----GVIGFI----------GLVVPHLI--------------RM 293 (357)
T ss_dssp GGCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCCST----------TTHHHHHH--------------HT
T ss_pred cCCHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHH--------------HH
Confidence 446678899999999876665554444333333222 111100 12334321 34
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 037378 595 IYFPNGQYSKQFYFFLIGLISPLIIWGASKF 625 (741)
Q Consensus 595 ~f~~~~~y~~l~~~fliG~~~~i~~~~l~r~ 625 (741)
+++++ .-..++.+.++|+++-+..-.+.|.
T Consensus 294 l~g~~-~~~llp~Sal~Ga~lll~aD~lar~ 323 (357)
T 4g1u_A 294 RIGAD-HRWLLPGAALGGACLLLTADTLART 323 (357)
T ss_dssp TSCSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 2235678999999887777666653
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.19 E-value=4.1e+02 Score=19.47 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcCcc
Q 037378 659 TIVRILYNLVVYRNYKD 675 (741)
Q Consensus 659 ~~vG~~~~~~~rr~~~~ 675 (741)
.+++....+|+|||+.+
T Consensus 24 ~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 34556667788887654
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.15 E-value=3e+02 Score=20.23 Aligned_cols=19 Identities=5% Similarity=0.361 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 037378 657 SWTIVRILYNLVVYRNYKD 675 (741)
Q Consensus 657 ~~~~vG~~~~~~~rr~~~~ 675 (741)
..++++..+..|+|||+-+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4567777788899988754
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.78 E-value=3.2e+02 Score=20.96 Aligned_cols=8 Identities=50% Similarity=1.693 Sum_probs=3.6
Q ss_pred CCChHHHH
Q 037378 416 RVPQWWFL 423 (741)
Q Consensus 416 ~vP~ww~~ 423 (741)
++|.|.++
T Consensus 9 ~vp~wiIi 16 (54)
T 2knc_A 9 AIPIWWVL 16 (54)
T ss_dssp TCCHHHHH
T ss_pred CcchHHHH
Confidence 34544433
Done!