BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037382
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W27|A Chain A, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
pdb|1W27|B Chain B, Phenylalanine Ammonia-Lyase (Pal) From Petroselinum
Crispum
Length = 714
Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/557 (85%), Positives = 519/557 (93%), Gaps = 4/557 (0%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
MLVR+NTLLQGYSGIRFEILEAITK LN +ITPCLPLRGTIT DLVPLSYIAGLLTGR
Sbjct: 160 MLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITX--DLVPLSYIAGLLTGR 217
Query: 61 PNSKATGPNGETIDAQEASKQAGF--GFFELQPKEGLALVNGTAVGSGLASMVLFDANNL 118
PNSKA GP G + +EA K AG GFFELQPKEGLALVNGTAVGSG+ASMVLF+AN L
Sbjct: 218 PNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANIL 277
Query: 119 ALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHE 178
A+L+E++SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGS+YVKAA+KLHE
Sbjct: 278 AVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHE 337
Query: 179 IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238
+DPLQKPKQDRYALRTSPQWLGPQIEVIR +TK IEREINSVNDNPLIDVSRNKA+HGGN
Sbjct: 338 MDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN 397
Query: 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 298
FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE
Sbjct: 398 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAE 457
Query: 299 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVAL 358
IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKT+EAV+ILKLMS+TFLV L
Sbjct: 458 IAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGL 517
Query: 359 CQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYI 418
CQAIDLRHLEENLK TVK+TVS VA++VLT+G NGELHPSRFCEKDLL+ DRE++FAYI
Sbjct: 518 CQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYI 577
Query: 419 DDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478
DDPCSATYPLMQKLRQ LVEHAL NG+NE+N ++SIFQKIA FE+ELKA+LPKEVE+AR
Sbjct: 578 DDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARA 637
Query: 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538
+E+GNP IPNRI+ECRSYPLY+ VR+ELGT +LTGEKVTSPGEEF+KVF AM +G+IID
Sbjct: 638 ALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIID 697
Query: 539 PMLECLWEWNGAPLPIC 555
P+LECL WNGAPLPIC
Sbjct: 698 PLLECLESWNGAPLPIC 714
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/557 (47%), Positives = 366/557 (65%), Gaps = 17/557 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML+R+N+ G SGIR+E++EA+ KLLN +++P +PLRG++ S DL+PL+YIAGLL G+
Sbjct: 153 MLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGK 210
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
P+ A + + A EA + G F+LQ KEGLALVNGT+ + +AS V++DAN L L
Sbjct: 211 PSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLL 270
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
L E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + + +++ + ID
Sbjct: 271 LVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSID 330
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG NFQ
Sbjct: 331 KLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQ 390
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
G+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG +IA
Sbjct: 391 GSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIA 450
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
MA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L A+CQ
Sbjct: 451 MAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQ 510
Query: 361 AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD 420
A+DLR LEE L V++ VS +A E + LL A V+ Y++
Sbjct: 511 AVDLRQLEEALVKVVENVVSTLA---------DECGLPNDTKARLLYVAKAVPVYTYLES 561
Query: 421 PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 480
PC T PL+ L+Q + L + + ++ ++A FE+ L L E+ R
Sbjct: 562 PCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLY 621
Query: 481 E-NGNPTIPN-----RIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQG 534
E G+ T N RI+ + P YR VREEL T ++ + +P E+ KVF A+ G
Sbjct: 622 EKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADG 681
Query: 535 KIIDPMLECLWEWNGAP 551
+I P+L CL + G P
Sbjct: 682 RITVPLLHCLQGFLGQP 698
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 506 bits (1304), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/557 (47%), Positives = 366/557 (65%), Gaps = 17/557 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML+R+N+ G SGIR+E++EA+ KLLN +++P +PLRG++ S DL+PL+YIAGLL G+
Sbjct: 153 MLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGK 210
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
P+ A + + A EA + G F+LQ KEGLALVNGT+ + +AS V++DAN L L
Sbjct: 211 PSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLL 270
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
L E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + + +++ + ID
Sbjct: 271 LVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSID 330
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG NFQ
Sbjct: 331 KLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQ 390
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
G+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG +IA
Sbjct: 391 GSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIA 450
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
MA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L A+CQ
Sbjct: 451 MAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQ 510
Query: 361 AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD 420
A+DLR LEE L V++ VS +A E + LL A V+ Y++
Sbjct: 511 AVDLRQLEEALVKVVENVVSTLA---------DECGLPNDTKARLLYVAKAVPVYTYLES 561
Query: 421 PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 480
PC T PL+ L+Q + L + + ++ ++A FE+ L L E+ R
Sbjct: 562 PCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLY 621
Query: 481 E-NGNPTIPN-----RIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQG 534
E G+ T N RI+ + P YR VREEL T ++ + +P E+ KVF A+ G
Sbjct: 622 EKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADG 681
Query: 535 KIIDPMLECLWEWNGAP 551
+I P+L CL + G P
Sbjct: 682 RITVPLLHCLQGFLGQP 698
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/557 (47%), Positives = 364/557 (65%), Gaps = 17/557 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML+R+N+ G SGIR+E++EA+ KLLN +++P +PLRG++ S DL+PL+YIAGLL G+
Sbjct: 133 MLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGK 190
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
P+ A + + A EA + G F+LQ KEGLALVNGT+ + LAS V++DAN L L
Sbjct: 191 PSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATALASTVMYDANVLLL 250
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
L E L +F EV+ G+ EF L HK+K HPGQIE+A ++E +L S + +++ + ID
Sbjct: 251 LVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQDLSREYYSID 310
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
L+KPKQDRYALR+SPQWL P ++ IR AT ++E E+NS NDNP+ID + ++ALHG NFQ
Sbjct: 311 KLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQ 370
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
G+ +G MD R+A+A +GKL+FAQF+EL+ ++Y+NGLP NLS G + S+DYG KG +IA
Sbjct: 371 GSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIA 430
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
MA+Y SELQ+LANPVT HV SAEQHNQD+NSL LIS+RKT EA+DILKLM ++ L A+CQ
Sbjct: 431 MAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTDEALDILKLMIASHLTAMCQ 490
Query: 361 AIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKAADREHVFAYIDD 420
A+DLR LEE L V++ VS +A E + LL A V+ Y++
Sbjct: 491 AVDLRQLEEALVKVVENVVSTLA---------DECGLPNDTKARLLYVAKAVPVYTYLES 541
Query: 421 PCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 480
PC T PL+ L+Q L + + ++ ++A FE+ L L E+ R
Sbjct: 542 PCDPTLPLLLGLKQSCFGSILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLY 601
Query: 481 E-NGNPTIPN-----RIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQG 534
E G+ T N RI+ R P YR VR+EL T ++ + +P E+ KVF A+ G
Sbjct: 602 EKKGHKTADNNDALVRIQGSRFLPFYRFVRDELDTGVMSARREQTPQEDVQKVFDAIADG 661
Query: 535 KIIDPMLECLWEWNGAP 551
+I P+L CL + G P
Sbjct: 662 RITVPLLHCLQGFLGQP 678
>pdb|1Y2M|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
pdb|1Y2M|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Yeast Rhododporidium Toruloides
Length = 716
Score = 295 bits (756), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 213/558 (38%), Positives = 298/558 (53%), Gaps = 29/558 (5%)
Query: 3 VRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPN 62
+RVN+L +G+S +R +LEA+T LNH ITP +PLRGTI+ASGDL PLSYIA ++G P+
Sbjct: 171 IRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPD 230
Query: 63 SKATGPNG---ETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLA 119
SK + + + A+EA L PKEGL LVNGTAV + A++ L DA+ L+
Sbjct: 231 SKVHVVHEGKEKILYAREAXALFNLEPVVLGPKEGLGLVNGTAVSASXATLALHDAHXLS 290
Query: 120 LLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VKAAKKLH 177
LLS+ L+A E G F L + HP QIE A + +L+GS + V +++
Sbjct: 291 LLSQSLTAXTVEAXVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVK 350
Query: 178 EIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKALHG 236
D +QDRY LRTSPQWLGP + + A + E S DNPLIDV + HG
Sbjct: 351 VKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHG 410
Query: 237 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 296
GNFQ + + + TRL +A IGKL F Q +E +N N GLPS L+ +PSL Y KG
Sbjct: 411 GNFQAAAVANTXEKTRLGLAQIGKLNFTQLTEXLNAGXNRGLPSCLAA-EDPSLSYHCKG 469
Query: 297 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLV 356
+IA A+Y SEL LANPVT HVQ AE NQ VNSL LIS+R+T E+ D+L L+ +T L
Sbjct: 470 LDIAAAAYTSELGHLANPVTTHVQPAEXANQAVNSLALISARRTTESNDVLSLLLATHLY 529
Query: 357 ALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCE---KDLLKAADREH 413
+ QAIDLR +E K + + + G E K L K ++ +
Sbjct: 530 CVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTN 589
Query: 414 VFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEV 473
+ + A + +VL +L+ NA K+AA E + L ++V
Sbjct: 590 SYDLVPRWHDAFSFAAGTVVEVLSSTSLSLA--AVNA-----WKVAAAESAIS--LTRQV 640
Query: 474 ENARQTVENGNPTIPNRIKEC--RSYPLYRLVREELGT-----NFLTGEKVTSPGEEFDK 526
R+T + T + R+ LY VREELG + G++ + G K
Sbjct: 641 ---RETFWSAASTSSPALSYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSK 697
Query: 527 VFTAMCQGKIIDPMLECL 544
++ A+ G+I + +L+ L
Sbjct: 698 IYEAIKSGRINNVLLKXL 715
>pdb|1T6J|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6J|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|A Chain A, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|B Chain B, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|C Chain C, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|D Chain D, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|E Chain E, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|F Chain F, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|G Chain G, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
pdb|1T6P|H Chain H, Crystal Structure Of Phenylalanine Ammonia Lyase From
Rhodosporidium Toruloides
Length = 714
Score = 285 bits (729), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 211/558 (37%), Positives = 295/558 (52%), Gaps = 31/558 (5%)
Query: 3 VRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPN 62
+RVN+L +G+S +R +LEA+T LNH ITP +PLRGTI S DL PLSYIA ++G P+
Sbjct: 171 IRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTI--SXDLSPLSYIAAAISGHPD 228
Query: 63 SKATGPNG---ETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLA 119
SK + + + A+EA L PKEGL LVNGTAV + A++ L DA+ L+
Sbjct: 229 SKVHVVHEGKEKILYAREAXALFNLEPVVLGPKEGLGLVNGTAVSASXATLALHDAHXLS 288
Query: 120 LLSEILSAIFAEVMQGKP-EFTDHLTHKLKHHPGQIEAAAIMEHILDGSSY-VKAAKKLH 177
LLS+ L+A E G F L + HP QIE A + +L+GS + V +++
Sbjct: 289 LLSQSLTAXTVEAXVGHAGSFHPFLHDVTRPHPTQIEVAGNIRKLLEGSRFAVHHEEEVK 348
Query: 178 EIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKALHG 236
D +QDRY LRTSPQWLGP + + A + E S DNPLIDV + HG
Sbjct: 349 VKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSHHG 408
Query: 237 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 296
GNFQ + + + TRL +A IGKL F Q +E +N N GLPS L+ +PSL Y KG
Sbjct: 409 GNFQAAAVANTXEKTRLGLAQIGKLNFTQLTEXLNAGXNRGLPSCLAA-EDPSLSYHCKG 467
Query: 297 AEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLV 356
+IA A+Y SEL LANPVT HVQ AE NQ VNSL LIS+R+T E+ D+L L+ +T L
Sbjct: 468 LDIAAAAYTSELGHLANPVTTHVQPAEXANQAVNSLALISARRTTESNDVLSLLLATHLY 527
Query: 357 ALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCE---KDLLKAADREH 413
+ QAIDLR +E K + + + G E K L K ++ +
Sbjct: 528 CVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFGSAXTGSNLRDELVEKVNKTLAKRLEQTN 587
Query: 414 VFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEV 473
+ + A + +VL +L+ NA K+AA E + L ++V
Sbjct: 588 SYDLVPRWHDAFSFAAGTVVEVLSSTSLSLA--AVNA-----WKVAAAESAIS--LTRQV 638
Query: 474 ENARQTVENGNPTIPNRIKEC--RSYPLYRLVREELGT-----NFLTGEKVTSPGEEFDK 526
R+T + T + R+ LY VREELG + G++ + G K
Sbjct: 639 ---RETFWSAASTSSPALSYLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSK 695
Query: 527 VFTAMCQGKIIDPMLECL 544
++ A+ G+I + +L+ L
Sbjct: 696 IYEAIKSGRINNVLLKXL 713
>pdb|2NYF|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Nostoc Punctiforme
Length = 567
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 210/371 (56%), Gaps = 13/371 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML+R N+ L G SGIR E+++ I LN +TP + G+I DLVPLSYI G L G
Sbjct: 125 MLLRANSHLYGASGIRLELIQRIETFLNAGVTPHVYEFGSI--GXDLVPLSYITGALIGL 182
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
S +G+ +DA A + G +LQPKEGLA++NGT+V +G+A+ ++DA L
Sbjct: 183 DPSFTVDFDGKEMDAVTALSRLGLPKLQLQPKEGLAMMNGTSVMTGIAANCVYDAKVLLA 242
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
L+ + A+ + + G + H+ K HPGQ+ A M +L SS V+ E+D
Sbjct: 243 LTMGVHALAIQGLYGTNQSFHPFIHQCKPHPGQLWTADQMFSLLKDSSLVR-----EELD 297
Query: 181 PLQKPK-----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALH 235
+ + QDRY+LR Q++GP ++ + TK IE E+NSV DNPLIDV + H
Sbjct: 298 GKHEYRGKDLIQDRYSLRCLAQFIGPIVDGVSEITKQIEVEMNSVTDNPLIDVENQVSYH 357
Query: 236 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFK 295
GGNF G +GV+MD R I + K + Q + LV+ ++NGLP +L G + ++ G K
Sbjct: 358 GGNFLGQYVGVTMDRLRYYIGLLAKHIDVQIALLVSPEFSNGLPPSLVGNSDRKVNMGLK 417
Query: 296 GAEIAMASYCSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTF 354
G +I+ S L F N + + + AEQ NQ++NS G IS+ T +VDI + +
Sbjct: 418 GLQISGNSIMPLLSFYGNSLADRFPTHAEQFNQNINSQGYISANLTRRSVDIFQNYMAIA 477
Query: 355 LVALCQAIDLR 365
L+ QA+DLR
Sbjct: 478 LMFGVQAVDLR 488
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 211/394 (53%), Gaps = 13/394 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML+R N+ ++G SGIR E+++ + LN +TP + G+I DLVPLSYI G L G
Sbjct: 125 MLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSI--GXDLVPLSYITGSLIGL 182
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
S NG+ +DA A +Q L PKEGLA++NGT+V +G+A+ ++D L
Sbjct: 183 DPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTA 242
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
++ + A+ + + G + H K HPGQ+ AA M +L S V+ E+D
Sbjct: 243 IAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVR-----DELD 297
Query: 181 PLQKPK-----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALH 235
+ QDRY+LR PQ+LGP ++ I K IE EINSV DNPLIDV + H
Sbjct: 298 GKHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYH 357
Query: 236 GGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFK 295
GGNF G +G+ MD+ R I + K + Q + L + ++NGLP +L G R ++ G K
Sbjct: 358 GGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLK 417
Query: 296 GAEIAMASYCSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTF 354
G +I S L F N + + + AEQ NQ++NS G S+ +VDI + +
Sbjct: 418 GLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIA 477
Query: 355 LVALCQAIDLRHLEENLKHTVKDTVSQVARKVLT 388
L+ QA+DLR ++ + + +S ++ +
Sbjct: 478 LMFGVQAVDLRTYKKTGHYDARACLSPATERLYS 511
>pdb|3CZO|A Chain A, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|B Chain B, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|C Chain C, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
pdb|3CZO|D Chain D, Crystal Structure Of Double Mutant Phenylalanine
Ammonia-Lyase From Anabaena Variabilis
Length = 539
Score = 207 bits (528), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 202/393 (51%), Gaps = 13/393 (3%)
Query: 2 LVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRP 61
L+R N+ +G SGIR E+++ LN +TP + G+I DLVPLSYI G L G
Sbjct: 102 LLRANSHXRGASGIRLELIKRXEIFLNAGVTPYVYEFGSIGX--DLVPLSYITGSLIGLD 159
Query: 62 NSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALL 121
S NG+ DA A +Q L PKEGLA NGT+V +G+A+ ++D L +
Sbjct: 160 PSFKVDFNGKEXDAPTALRQLNLSPLTLLPKEGLAXXNGTSVXTGIAANCVYDTQILTAI 219
Query: 122 SEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDP 181
+ + A+ + + G + H K HPGQ+ AA +L S V+ E+D
Sbjct: 220 AXGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQXISLLANSQLVR-----DELDG 274
Query: 182 LQKPK-----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHG 236
+ QDRY+LR PQ+LGP ++ I K IE EINSV DNPLIDV + HG
Sbjct: 275 KHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHG 334
Query: 237 GNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKG 296
GNF G +G D+ R I + K + Q + L + ++NGLP +L G R ++ G KG
Sbjct: 335 GNFLGQYVGXGXDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNXGLKG 394
Query: 297 AEIAMASYCSELQFLANPVTNHVQS-AEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFL 355
+I S L F N + + + AEQ NQ++NS G S+ +VDI + + L
Sbjct: 395 LQICGNSIXPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIAL 454
Query: 356 VALCQAIDLRHLEENLKHTVKDTVSQVARKVLT 388
QA+DLR ++ + + ++S ++ +
Sbjct: 455 XFGVQAVDLRTYKKTGHYDARASLSPATERLYS 487
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 209/418 (50%), Gaps = 38/418 (9%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
ML R+ +L +G S I + + ++ N I PC+P +G++ DL PL+ IA + TG+
Sbjct: 125 MLARIVSLSRGNSAISIVNFKKLIEIYNQGIVPCIPEKGSL--GXDLGPLAAIALVCTGQ 182
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ GE + A ++AG EL KEGLAL+NGT+ GL ++ + L
Sbjct: 183 WKARY---QGEQMSGAMALEKAGISPMELSFKEGLALINGTSAMVGLGVLLYDEVKRLFD 239
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA-IMEHILDGSSYVKA--AKKL- 176
++++ E + GK + + H++K H GQ+E A I E + D S V +KL
Sbjct: 240 TYLTVTSLSIEGLHGKTKPFEPAVHRMKPHQGQLEVATTIWETLADSSLAVNEHEVEKLI 299
Query: 177 -HEIDPLQKPK----QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN 231
E+D L K +D Y++R +PQ LGP + ++ +++ E+NS NDNPLID +
Sbjct: 300 AEEMDGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTE 359
Query: 232 KALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLD 291
+ H G+F G + ++MD+ +A+ + L + ++ +NGLP L N L
Sbjct: 360 EVFHNGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLC-AENAGLR 418
Query: 292 YGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMS 351
G G + AS +E + P++ S QD+ S GL+++R+ E + LK +
Sbjct: 419 LGLMGGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVF 478
Query: 352 STFLVALCQAIDLR---------------------HLEENLKHTVKDTVSQVARKVLT 388
S L+ CQA+D+R +LEE+ T+ D + +A+ VLT
Sbjct: 479 SFELLCACQAVDIRGTAGLSKRTRALYDKTRTLVPYLEED--KTISDYIESIAQTVLT 534
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 206/422 (48%), Gaps = 32/422 (7%)
Query: 4 RVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNS 63
R+NTL +G+S +R ILE + + LN ITP +P G++ DL PLS++A L G
Sbjct: 102 RLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---E 156
Query: 64 KATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSE 123
+G ++ + + G EL+ KEGLAL+NGT+ +GL S+V+ A A +E
Sbjct: 157 GYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAE 216
Query: 124 ILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPL 182
I++A+ E ++G H + + H GQI+ AA M ++ GS L L
Sbjct: 217 IVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--EL 274
Query: 183 QKPK-------------QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVS 229
QK K Q Y+LR PQ +G + + A + E+NS NDNPL
Sbjct: 275 QKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FE 333
Query: 230 RNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS 289
+ HG NF G PI +MD +A+ +G L Q + ++N + GLP L G +P
Sbjct: 334 GKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPG 392
Query: 290 LDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILK 348
L GF GA+ + +E + + T V S NQDV S+GLIS+R + + K
Sbjct: 393 LHSGFAGAQYPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNK 451
Query: 349 LMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKA 408
+++ +L A QA+D+ + L K T V R V T+G + R+ D+
Sbjct: 452 ILAVEYLAA-AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELV 504
Query: 409 AD 410
AD
Sbjct: 505 AD 506
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 206/422 (48%), Gaps = 32/422 (7%)
Query: 4 RVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNS 63
R+NTL +G+S +R ILE + + LN ITP +P G++ DL PLS++A L G
Sbjct: 115 RLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---E 169
Query: 64 KATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSE 123
+G ++ + + G EL+ KEGLAL+NGT+ +GL S+V+ A A +E
Sbjct: 170 GYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAE 229
Query: 124 ILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPL 182
I++A+ E ++G H + + H GQI+ AA M ++ GS L L
Sbjct: 230 IVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--EL 287
Query: 183 QKPK-------------QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVS 229
QK K Q Y+LR PQ +G + + A + E+NS NDNPL
Sbjct: 288 QKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FE 346
Query: 230 RNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS 289
+ HG NF G PI +MD +A+ +G L Q + ++N + GLP L G +P
Sbjct: 347 GKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPG 405
Query: 290 LDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILK 348
L GF GA+ + +E + + T V S NQDV S+GLIS+R + + K
Sbjct: 406 LHSGFAGAQYPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNK 464
Query: 349 LMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKA 408
+++ +L A QA+D+ + L K T V R V T+G + R+ D+
Sbjct: 465 ILAVEYLAA-AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELV 517
Query: 409 AD 410
AD
Sbjct: 518 AD 519
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 206/422 (48%), Gaps = 32/422 (7%)
Query: 4 RVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNS 63
R+NTL +G+S +R ILE + + LN ITP +P G++ DL PLS++A L G
Sbjct: 113 RLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---E 167
Query: 64 KATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSE 123
+G ++ + + G EL+ KEGLAL+NGT+ +GL S+V+ A A +E
Sbjct: 168 GYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAE 227
Query: 124 ILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPL 182
I++A+ E ++G H + + H GQI+ AA M ++ GS L L
Sbjct: 228 IVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--EL 285
Query: 183 QKPK-------------QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVS 229
QK K Q Y+LR PQ +G + + A + E+NS NDNPL
Sbjct: 286 QKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FE 344
Query: 230 RNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS 289
+ HG NF G PI +MD +A+ +G L Q + ++N + GLP L G +P
Sbjct: 345 GKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPG 403
Query: 290 LDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILK 348
L GF GA+ + +E + + T V S NQDV S+GLIS+R + + K
Sbjct: 404 LHSGFAGAQYPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNK 462
Query: 349 LMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKA 408
+++ +L A QA+D+ + L K T V R V T+G + R+ D+
Sbjct: 463 ILAVEYLAA-AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELV 515
Query: 409 AD 410
AD
Sbjct: 516 AD 517
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 206/422 (48%), Gaps = 32/422 (7%)
Query: 4 RVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNS 63
R+NTL +G+S +R ILE + + LN ITP +P G++ DL PLS++A L G
Sbjct: 113 RLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---E 167
Query: 64 KATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSE 123
+G ++ + + G EL+ KEGLAL+NGT+ +GL S+V+ A A +E
Sbjct: 168 GYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAE 227
Query: 124 ILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPL 182
I++A+ E ++G H + + H GQI+ AA M ++ GS L L
Sbjct: 228 IVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--EL 285
Query: 183 QKPK-------------QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVS 229
QK K Q Y+LR PQ +G + + A + E+NS NDNPL
Sbjct: 286 QKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FE 344
Query: 230 RNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS 289
+ HG NF G PI +MD +A+ +G L Q + ++N + GLP L G +P
Sbjct: 345 GKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPG 403
Query: 290 LDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILK 348
L GF GA+ + +E + + T V S NQDV S+GLIS+R + + K
Sbjct: 404 LHSGFAGAQYPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNK 462
Query: 349 LMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKA 408
+++ +L A QA+D+ + L K T V R V T+G + R+ D+
Sbjct: 463 ILAVEYLAA-AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELV 515
Query: 409 AD 410
AD
Sbjct: 516 AD 517
>pdb|3KDY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
pdb|3KDY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase Mutant
Construct
Length = 537
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 137/422 (32%), Positives = 206/422 (48%), Gaps = 32/422 (7%)
Query: 4 RVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNS 63
R+NTL +G+S +R ILE + + LN ITP +P G++ DL PLS++A L G
Sbjct: 113 RLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSL--GXDLAPLSHVASTLIG---E 167
Query: 64 KATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSE 123
+G ++ + + G EL+ KEGLAL+NGT+ +GL S+V+ A A +E
Sbjct: 168 GYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAE 227
Query: 124 ILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPL 182
I++A+ E ++G H + + H GQI+ AA M ++ GS L L
Sbjct: 228 IVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRR--EL 285
Query: 183 QKPK-------------QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVS 229
QK K Q Y+LR PQ +G + + A + E+NS NDNPL
Sbjct: 286 QKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLF-FE 344
Query: 230 RNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS 289
+ HG NF G PI +MD +A+ +G L Q + ++N + GLP L G +P
Sbjct: 345 GKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSG-DPG 403
Query: 290 LDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAV-DILK 348
L GF GA+ + +E + + T V S NQDV S+GLIS+R + + K
Sbjct: 404 LHSGFAGAQYPATALVAENRTIGPASTQSVPS-NGDNQDVVSMGLISARNARRVLSNNNK 462
Query: 349 LMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRFCEKDLLKA 408
+++ +L A QA+D+ + L K T V R V T+G + R+ D+
Sbjct: 463 ILAVEYLAA-AQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVD------RYMADDIELV 515
Query: 409 AD 410
AD
Sbjct: 516 AD 517
>pdb|2O6Y|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O6Y|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
pdb|2O7B|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7B|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Coumarate
pdb|2O7D|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
pdb|2O7D|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides,
Complexed With Caffeate
Length = 521
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 193/373 (51%), Gaps = 15/373 (4%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
+L R+ ++ QG SG + + LLN + P +P RGT+ DL PL+++ L GR
Sbjct: 107 VLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGR 164
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
+ +G +D E ++ +L ++ LALVNGT+ +G+A + +L
Sbjct: 165 GDF--LDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGN 222
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVKAAKKL 176
+ L+A+ AE ++G+ E L+ HPGQ +AAA + +DGS+ +V A ++L
Sbjct: 223 WAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRL 282
Query: 177 HEIDPLQKPK--QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN-KA 233
D +P+ QD Y+LR +PQ LG + + + + + E+N+V DNP+ + A
Sbjct: 283 DAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPA 342
Query: 234 LHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS-LDY 292
LHGGNF G + ++ D A+ + L Q + L ++ N GLP L R P+ L+
Sbjct: 343 LHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNS 400
Query: 293 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSS 352
GF GA++ + +E++ P + H S NQDV SLG I++R E +D + +
Sbjct: 401 GFMGAQVTATALLAEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILA 459
Query: 353 TFLVALCQAIDLR 365
+ L QA +LR
Sbjct: 460 ILALCLAQAAELR 472
>pdb|2O78|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O78|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant) Complexed With Cinnamic Acid
pdb|2O7E|A Chain A, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|B Chain B, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|C Chain C, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|D Chain D, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|E Chain E, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|F Chain F, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|G Chain G, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7E|H Chain H, Tyrosine Ammonia-lyase From Rhodobacter Sphaeroides
(his89phe Variant), Bound To 2-aminoindan-2-phosphonic
Acid
pdb|2O7F|A Chain A, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|B Chain B, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|C Chain C, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|D Chain D, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|E Chain E, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|F Chain F, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|G Chain G, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
pdb|2O7F|H Chain H, Tyrosine Ammonia-Lyase From Rhodobacter Sphaeroides
(His89phe Variant), Complexed With Coumaric Acid
Length = 521
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 193/373 (51%), Gaps = 15/373 (4%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
+L R+ ++ QG SG + + LLN + P +P RGT+ DL PL+++ L GR
Sbjct: 107 VLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTV--GXDLTPLAHMVLCLQGR 164
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
+ +G +D E ++ +L ++ LALVNGT+ +G+A + +L
Sbjct: 165 GDFLDR--DGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGN 222
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSS----YVKAAKKL 176
+ L+A+ AE ++G+ E L+ HPGQ +AAA + +DGS+ +V A ++L
Sbjct: 223 WAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRL 282
Query: 177 HEIDPLQKPK--QDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN-KA 233
D +P+ QD Y+LR +PQ LG + + + + + E+N+V DNP+ + A
Sbjct: 283 DAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPA 342
Query: 234 LHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPS-LDY 292
LHGGNF G + ++ D A+ + L Q + L ++ N GLP L R P+ L+
Sbjct: 343 LHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLH--RGPAGLNS 400
Query: 293 GFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSS 352
GF GA++ + +E++ P + H S NQDV SLG I++R E +D + +
Sbjct: 401 GFMGAQVTATALLAEMRA-TGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILA 459
Query: 353 TFLVALCQAIDLR 365
+ L QA +LR
Sbjct: 460 ILALCLAQAAELR 472
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 15/376 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
M++++N+L +G+SGIR ++++A+ L+N + P +PL+G++ ASG L PL++++ +L G
Sbjct: 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGALAPLAHMSLVLLGE 159
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ G+ + A EA AG L KEGLAL+NGT + A LF A +L
Sbjct: 160 GKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYA 216
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
+ + E + G D H+ + GQI+ AA +L SS V + K D
Sbjct: 217 AAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NAD 274
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
+Q P Y+LR PQ +G + +R A + + E N+V+DNPL+ + + GGNF
Sbjct: 275 KVQDP----YSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFH 330
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
P+ ++ DN LAIA IG L + S L+ D + + LP L N ++ GF A++
Sbjct: 331 AEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVT 387
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
A+ SE + L++P + + +D S+ + ++ E + + + + + CQ
Sbjct: 388 AAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQ 447
Query: 361 AIDLRHLEENLKHTVK 376
+DLR + LK + K
Sbjct: 448 GLDLR---KGLKTSAK 460
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 15/376 (3%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
M++++N+L +G+SGIR ++++A+ L+N + P +PL+G++ ASGDL PL++++ +L G
Sbjct: 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGE 159
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ G+ + A EA AG L KEGLAL+NGT + A LF A +L
Sbjct: 160 GKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYA 216
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
+ + E + G D H+ + GQI+ AA +L SS V + K D
Sbjct: 217 AAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NAD 274
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
+Q P Y+LR PQ +G + +R A + + E N+V+DNPL+ + + GGN
Sbjct: 275 KVQDP----YSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGH 330
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
P+ ++ DN LAIA IG L + S L+ D + + LP L N ++ GF A++
Sbjct: 331 AEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVT 387
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
A+ SE + L++P + + +D S+ + ++ E + + + + + CQ
Sbjct: 388 AAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQ 447
Query: 361 AIDLRHLEENLKHTVK 376
+DLR + LK + K
Sbjct: 448 GLDLR---KGLKTSAK 460
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 194/376 (51%), Gaps = 17/376 (4%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
M++++N+L +G+SGIR ++++A+ L+N + P +PL+G++ DL PL++++ +L G
Sbjct: 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGE 157
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ G+ + A EA AG L KEGLAL+NGT + A LF A +L
Sbjct: 158 GKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYA 214
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
+ + E + G D H+ + GQI+ AA +L SS V + K D
Sbjct: 215 AAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NAD 272
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
+Q P Y+LR PQ +G + +R A + + E N+V+DNPL+ + + GGNF
Sbjct: 273 KVQDP----YSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFH 328
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
P+ ++ DN LAIA IG L + S L+ D + + LP L N ++ GF A++
Sbjct: 329 AEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVT 385
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
A+ SE + L++P + + +D S+ + ++ E + + + + + CQ
Sbjct: 386 AAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQ 445
Query: 361 AIDLRHLEENLKHTVK 376
+DLR + LK + K
Sbjct: 446 GLDLR---KGLKTSAK 458
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 194/376 (51%), Gaps = 17/376 (4%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
M++++N+L +G+SGIR ++++A+ L+N + P +PL+G++ DL PL++++ +L G
Sbjct: 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGE 157
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ G+ + A EA AG L KEGLAL+NGT + A LF A +L
Sbjct: 158 GKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYA 214
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
+ + E + G D H+ + GQI+ AA +L SS V + K D
Sbjct: 215 AAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NAD 272
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
+Q P ++LR PQ +G + +R A + + E N+V+DNPL+ + + GGNF
Sbjct: 273 KVQDP----FSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNFH 328
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
P+ ++ DN LAIA IG L + S L+ D + + LP L N ++ GF A++
Sbjct: 329 AEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVT 385
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
A+ SE + L++P + + +D S+ + ++ E + + + + + CQ
Sbjct: 386 AAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQ 445
Query: 361 AIDLRHLEENLKHTVK 376
+DLR + LK + K
Sbjct: 446 GLDLR---KGLKTSAK 458
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 193/376 (51%), Gaps = 17/376 (4%)
Query: 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGR 60
M++++N+L +G+SGIR ++++A+ L+N + P +PL+G++ DL PL++++ +L G
Sbjct: 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSV--GXDLAPLAHMSLVLLGE 157
Query: 61 PNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLAL 120
++ G+ + A EA AG L KEGLAL+NGT + A LF A +L
Sbjct: 158 GKARY---KGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYA 214
Query: 121 LSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEID 180
+ + E + G D H+ + GQI+ AA +L SS V + K D
Sbjct: 215 AAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHK--NAD 272
Query: 181 PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240
+Q P Y+LR PQ +G + +R A + + E N+V+DNPL+ + + GGN
Sbjct: 273 KVQDP----YSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAH 328
Query: 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIA 300
P+ ++ DN LAIA IG L + S L+ D + + LP L N ++ GF A++
Sbjct: 329 AEPVAMAADNLALAIAEIGSLSERRIS-LMMDKHMSQLPPFLV--ENGGVNSGFMIAQVT 385
Query: 301 MASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQ 360
A+ SE + L++P + + +D S+ + ++ E + + + + + CQ
Sbjct: 386 AAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQ 445
Query: 361 AIDLRHLEENLKHTVK 376
+DLR + LK + K
Sbjct: 446 GLDLR---KGLKTSAK 458
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 428 LMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTI 487
+MQ + L E NG +KN N+SI K EEE +A LP ++A PTI
Sbjct: 55 VMQNI--TLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN--CPTI 110
Query: 488 P 488
P
Sbjct: 111 P 111
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 428 LMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTI 487
+MQ + L E NG +KN N+SI K EEE +A LP ++A PTI
Sbjct: 32 VMQNI--TLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN--CPTI 87
Query: 488 P 488
P
Sbjct: 88 P 88
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 428 LMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNPTI 487
+MQ + L E NG +KN N+SI K EEE +A LP ++A PTI
Sbjct: 33 VMQNI--TLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPN--CPTI 88
Query: 488 P 488
P
Sbjct: 89 P 89
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 491 IKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 544
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 73 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 125
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 491 IKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 544
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 491 IKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 544
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 427 PLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ-----TVE 481
P +++ ++ L E E N +I A F +LK++ KE+++ + T+
Sbjct: 290 PHLREAQKTLAEEVTKFIHGEDALNDAIRISQALFSGDLKSLSAKELKDGFKDVPQVTLS 349
Query: 482 NGNPTIPNRIKECRSYPLYRLVREEL--GTNFLTGEK------VTSPGEEFDKVFTAMCQ 533
N I + E P R RE++ G ++ GE+ +P ++ D FT + +
Sbjct: 350 NDTTNIVEVLIETGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKIDGEFTIIRR 409
Query: 534 GK 535
GK
Sbjct: 410 GK 411
>pdb|2V1Y|A Chain A, Structure Of A Phosphoinositide 3-Kinase Alpha Adaptor-
Binding Domain (Abd) In A Complex With The Ish2 Domain
From P85 Alpha
Length = 108
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 492 KECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 544
KE R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 51 KEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 102
>pdb|4A55|A Chain A, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 1096
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 491 IKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECL 544
+E R YPL++L+++E F++ + E FD+ +C ++ P L+ +
Sbjct: 78 FREARKYPLHQLLQDETSYIFVSVTQEAEREEFFDET-RRLCDLRLFQPFLKVI 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,257,407
Number of Sequences: 62578
Number of extensions: 679252
Number of successful extensions: 1911
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1799
Number of HSP's gapped (non-prelim): 37
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)