Query 037382
Match_columns 555
No_of_seqs 261 out of 981
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02457 phenylalanine ammonia 100.0 2E-168 3E-173 1388.4 55.9 555 1-555 150-706 (706)
2 TIGR01226 phe_am_lyase phenyla 100.0 1E-157 3E-162 1299.3 52.4 544 1-545 136-680 (680)
3 KOG0222 Phenylalanine and hist 100.0 1E-157 3E-162 1223.1 42.6 547 1-555 168-715 (715)
4 COG2986 HutH Histidine ammonia 100.0 8E-123 2E-127 973.4 37.7 391 1-412 101-491 (498)
5 TIGR01225 hutH histidine ammon 100.0 1E-119 3E-124 979.0 39.9 392 1-412 98-489 (506)
6 TIGR03832 Tyr_2_3_mutase tyros 100.0 2E-118 3E-123 971.8 40.6 398 1-410 96-505 (507)
7 PRK09367 histidine ammonia-lya 100.0 2E-117 4E-122 963.3 39.2 391 1-412 101-491 (500)
8 cd00332 PAL-HAL Phenylalanine 100.0 1E-113 3E-118 922.0 36.4 352 1-365 93-444 (444)
9 PF00221 Lyase_aromatic: Aroma 100.0 5E-113 1E-117 925.6 34.5 372 1-387 98-469 (473)
10 cd01594 Lyase_I_like Lyase cla 99.8 9.6E-19 2.1E-23 172.8 10.4 210 53-350 16-230 (231)
11 PLN02972 Histidyl-tRNA synthet 95.8 0.014 3.1E-07 67.6 6.1 123 115-267 38-161 (763)
12 TIGR01226 phe_am_lyase phenyla 48.2 3.8E+02 0.0082 31.7 14.3 58 428-485 560-617 (680)
13 COG1441 MenC O-succinylbenzoat 24.5 18 0.0004 36.7 -0.9 28 518-545 124-155 (321)
14 PF12554 MOZART1: Mitotic-spin 21.2 1E+02 0.0022 23.8 2.8 22 12-33 16-37 (48)
No 1
>PLN02457 phenylalanine ammonia-lyase
Probab=100.00 E-value=1.5e-168 Score=1388.37 Aligned_cols=555 Identities=88% Similarity=1.304 Sum_probs=537.7
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++|+|.+|||+||+|+||++|||||||||+||||||++|+|+|+++++.|+|+++++.|||+
T Consensus 150 MliRlNsL~~G~SGVr~evle~L~~lLN~~i~PvVP~~GSVGASGDL~PLAhIAl~L~Geg~~~~v~~~G~~~~a~eAL~ 229 (706)
T PLN02457 150 MLVRINTLLQGYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVTPDGEKVTAAEAFK 229 (706)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeeccCCEEEcHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999877778999999999999
Q ss_pred hcCCCC--cccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHH
Q 037382 81 QAGFGF--FELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA 158 (555)
Q Consensus 81 ~~gl~p--~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~ 158 (555)
++||+| ++|+|||||||||||++|+|+|+++++|+++|+.++++++||++|||+|++++|||++|++||||||+++|+
T Consensus 230 ~aGl~Pp~~~L~~KEGLALiNGTa~~~a~aalal~da~~L~~~a~v~~Als~Eal~G~~~~fdp~ih~~RpHpGQ~e~Aa 309 (706)
T PLN02457 230 LAGIEGGFFELQPKEGLALVNGTAVGSALASTVLFDANVLAVLAEVLSAVFCEVMQGKPEFTDHLTHKLKHHPGQIEAAA 309 (706)
T ss_pred HcCCCCCCcCCCCCcchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhcCHHHHhcCCChhHHHHHH
Confidence 999954 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCC
Q 037382 159 IMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238 (555)
Q Consensus 159 ~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGN 238 (555)
+||++|+||++++...+.++.++..+++||||||||+||||||++|+|++++++|++||||+||||||++++++++||||
T Consensus 310 ~ir~lL~GS~l~~~~~~~~~~~~~~~~vQD~YSLRc~PQvlGp~~d~l~~a~~~ie~ElNS~tDNPLId~~~~~vl~GGN 389 (706)
T PLN02457 310 IMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPQIEVIRAATKSIEREINSVNDNPLIDVARDKALHGGN 389 (706)
T ss_pred HHHHHhCcCccchhhhhccccccccCcCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCceeCCCCceeeCCC
Confidence 99999999999876544444455567899999999999999999999999999999999999999999998889999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccc
Q 037382 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 318 (555)
Q Consensus 239 F~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~ 318 (555)
|||+||+++||++++|++++|+++|||+++|+||.+|+|||+||+++++||++||||++||++|||++||++||||+|+|
T Consensus 390 F~g~~va~amD~l~lAla~lg~ls~rr~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~~~q~taAAl~sEl~~LA~PvS~~ 469 (706)
T PLN02457 390 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNH 469 (706)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhcCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999976689999999999999999999999999999999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 037382 319 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPS 398 (555)
Q Consensus 319 ~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~d 398 (555)
++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||.++++|++.++.+++++++++++.+.++.+.+.
T Consensus 470 ~~pt~~~nED~~Smg~~sArkt~e~ve~l~~~lAieLl~a~QAlDLR~~~~~l~~~~~~~~~~vr~~v~~~~~~~~~~~~ 549 (706)
T PLN02457 470 VQSAEQHNQDVNSLGLISARKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKSAVKNTVSQVAKKTLTTGANGELHPS 549 (706)
T ss_pred cccccCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999988899999999999999999998888999999
Q ss_pred cCCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHH
Q 037382 399 RFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478 (555)
Q Consensus 399 r~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~ 478 (555)
||+++|+.+++++.++|+|.+|+|+.+|++|++++++|+||+++++..+++..+++|++|..|+++++++|+++|+++|+
T Consensus 550 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~~~l~~~~~~~r~ 629 (706)
T PLN02457 550 RFCEKDLLKVVDREPVFSYIDDPCSATYPLMQKLRQVLVEHALANGEAEKNASTSVFRKIGAFEEELKAALPKEVEAARE 629 (706)
T ss_pred ccCHHHHHHHHhhcceecccCCCcccchhHHHHHHHHHHHHHhhCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877777777899999999999999999999999999
Q ss_pred HhhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 037382 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC 555 (555)
Q Consensus 479 a~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~~ 555 (555)
+|++|+.+++++|++|||||||+|||+|||||||+|++++|||+||||||+|||+|+|++|||+||++|+|.|+|||
T Consensus 630 ~~~~~~~~~~~ri~~~~s~~lY~fVR~~L~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 706 (706)
T PLN02457 630 AYENGTAPIPNRIKECRSYPLYRFVREELGTELLTGEKTRSPGEEFDKVFDAICQGKLIDPLLECLKEWNGAPLPIC 706 (706)
T ss_pred HHhcCCccccchhhcCcchHHHHHHHHHcCCccccCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhcCCCCCCCC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=100.00 E-value=1.3e-157 Score=1299.31 Aligned_cols=544 Identities=81% Similarity=1.203 Sum_probs=522.1
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++|+|.+|||+||+|+||++|||||||||+||||||++|+|+|++++++++|+++++.|||+
T Consensus 136 MlvRlNsL~~G~SGVr~evle~l~~lLN~~i~P~VP~rGSIGASGDL~PLShIa~aL~Geg~v~~~~~~G~~~~a~eAL~ 215 (680)
T TIGR01226 136 MLVRINTLLQGYSGIRFEILEAITKLLNANVTPCLPLRGTITASGDLVPLSYIAGLITGRPNSKVYSPDGQIMSAAEALK 215 (680)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHhCcCcccCCCCCCcCccchHHHHHHHHHHHcCCCCceeecCCCeEEeHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999876666899999999999
Q ss_pred hcCCCC-cccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHH
Q 037382 81 QAGFGF-FELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAI 159 (555)
Q Consensus 81 ~~gl~p-~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~ 159 (555)
++||+| ++|+|||||||||||++|+|+|+++++|+++|+.++++++||++|+|+|++++|++.+|++||||||+++|++
T Consensus 216 ~aGl~p~~~L~pKEGLALvNGTa~~~a~aalal~~a~~L~~~a~v~~Al~~Eal~G~~~~~~~~~~~~RpHpGQ~e~Aa~ 295 (680)
T TIGR01226 216 LAGIEGGFELQPKEGLAIVNGTAVGASMASLVLFEANILALLAEVLSAMFCEVMNGKPEFTDHLTHKLKHHPGQIEAAAI 295 (680)
T ss_pred HcCCCCCCCCCCccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcCChHHHHHcCCCCcHHHHHHH
Confidence 999966 9999999999999999999999999999999999999999999999999999555557799999999999999
Q ss_pred HHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCC
Q 037382 160 MEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNF 239 (555)
Q Consensus 160 ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF 239 (555)
||++|+||+++....+.++.++..+++||||||||+||||||++|+|++++++|++||||+|||||||+++++++|||||
T Consensus 296 ir~lL~GS~l~~~~~~~~~~~~~~~~vQD~YSlRc~PQvlGp~~e~l~~a~~~ie~ElNS~tDNPLI~~~~~~vlhgGNF 375 (680)
T TIGR01226 296 MEHILDGSSYAKHAEKEVEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSATKMIEREINSVNDNPLIDVERGKAHHGGNF 375 (680)
T ss_pred HHHHhCCChhhhhhhhccccCccCCcCCCcccchhhhhhhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCCceeeCCCC
Confidence 99999999998876554444555678999999999999999999999999999999999999999999988999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCcccc
Q 037382 240 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV 319 (555)
Q Consensus 240 ~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~ 319 (555)
||++|+++||++++||+++|+++|||+++|+||.+|+|||+||+++++||++||||++||++|||++||++||||+|+|+
T Consensus 376 ~g~~ia~amD~l~lAla~lg~ls~~r~~~Lvnp~~n~GLP~fL~~~~~pgl~~Gf~g~q~~~aal~sEl~~LA~PvS~~~ 455 (680)
T TIGR01226 376 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLAGGRNPSLDYGFKGAEIAMASYTSELQFLANPVTNHV 455 (680)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCHhhCCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCccCc
Confidence 99999999999999999999999999999999999999999999766899999999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 037382 320 QSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSR 399 (555)
Q Consensus 320 ~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr 399 (555)
+|+++|||||||||++||||+.+++|++++|+|+||+++|||+|||+++++|.+.++..+.++.++++.++.++.+.+.|
T Consensus 456 ~~a~~~nEDv~Smg~~sArk~~~~ve~l~~m~A~eLl~a~QAlDLR~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 535 (680)
T TIGR01226 456 QSAEQHNQDVNSLGLISARKTAEAVDILKLMLATYLYALCQAVDLRHLEENFKSTVKNIVSEVAKKVLGMGLTGELHPKR 535 (680)
T ss_pred cccccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888899
Q ss_pred CCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHHH
Q 037382 400 FCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQT 479 (555)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~a 479 (555)
++++++.+.|++.++|+|.|++|+.+|++|++++++|++|+|++++.+++ ..+.|.+|+.|+++++..+.+++++.|.+
T Consensus 536 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~-~~s~~~~~~~~~~~~~~~l~~e~~~~~~~ 614 (680)
T TIGR01226 536 FCEKDLLKVLDRETVFDYIDDPCSANYPLMQKLRQVLVEHALSNGEREKD-LLSSFQKIQVFEAELKAVLPPDVRGARAA 614 (680)
T ss_pred HHHHHHHHHhcccCCCChhhccchhhHHHHHHHHHHHHHHhhcCCccccc-hhHHHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987766644 56789999999999999999999999999
Q ss_pred hhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhh
Q 037382 480 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLW 545 (555)
Q Consensus 480 ~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~ 545 (555)
|.+|..++|+++.+|||||||+|||+|||||||+|++.+|||+||||||+|||+|+|++|||+||+
T Consensus 615 ~~~g~~~~~~~i~~c~s~~lY~fVR~~l~~~~~~g~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~ 680 (680)
T TIGR01226 615 GDSGTSPAPNRIGECRSYPLYRFVREELGTKYLTGEKYNSPGEEISKVYEAISEGKIIDPLLKCLD 680 (680)
T ss_pred ccCCCchhhHHHhccCCcHHHHHHHHHcCCccccCCcCCCCCccHHHHHHHHHCCcchHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 3
>KOG0222 consensus Phenylalanine and histidine ammonia-lyase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-157 Score=1223.08 Aligned_cols=547 Identities=80% Similarity=1.180 Sum_probs=535.0
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++||||||.|+++++.+|||+.|+|.||++|+|||||||.||||||+.|+|+|+.+.|.+.|++.+|.+||+
T Consensus 168 m~lRIN~L~qGySGI~~E~leai~~~~N~~~~p~lP~rGTi~aSGDL~PLs~iA~~L~G~pn~K~~~P~~~~~~A~~a~k 247 (715)
T KOG0222|consen 168 MLLRINTLLQGYSGIRFEILEAITSLLNANITPYLPLRGTITASGDLVPLSYIAGGLTGRPNSKMWGPSGEWLTAKEAFK 247 (715)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHhcCcccccCcCcccccCCCcccHHHHhhhhcCCCCCcccCCCCCcccHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCC-cccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHH
Q 037382 81 QAGFGF-FELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAI 159 (555)
Q Consensus 81 ~~gl~p-~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~ 159 (555)
.+|+.| +.|+|||||||||||++.+|+||.++++|+.++++|++++||+.|+|.|++++||+.+|++||||||+++|.+
T Consensus 248 ~~gls~f~eL~PKEGLALvNGTav~s~L~s~vl~~An~ia~~aev~sAl~~eVmkGk~e~~D~~~Hrlk~H~GQieaA~~ 327 (715)
T KOG0222|consen 248 LAGLSPFFELQPKEGLALVNGTAVGSGLASTVLERANIIAVQAEVLSALFAEVMKGKPEFTDHLTHRLKHHPGQIEAAAR 327 (715)
T ss_pred HcCCCcceecccccceeeeccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchhhccCCCcHHHHHHH
Confidence 999955 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCC
Q 037382 160 MEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNF 239 (555)
Q Consensus 160 ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF 239 (555)
||++|.||.+.+...+.|..||.++++||+|.|||+||||||+.|+|+++++.|++||||+|||||||+++++++|||||
T Consensus 328 m~~iLd~ss~~ke~ae~Hr~dpl~k~~QD~YaLR~~PQ~~G~~~evI~fatkiIe~EiNSvnDNPli~vsR~kai~GGNF 407 (715)
T KOG0222|consen 328 MEHILDGSSYPKEAAESHRMDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKIIEREINSVNDNPLIDVSRNKAIHGGNF 407 (715)
T ss_pred HHHHhcccccHHHHHHHhccCccccchhhhhhhhcCchhhchHHHHHHHHHHHHHHHhhccCCCcceecccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCcccc
Q 037382 240 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV 319 (555)
Q Consensus 240 ~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~ 319 (555)
||+|++.|||++|+|++.||+|+|+|+.||+|+.+|+|||.||+++.+||+|||||++|++||+|+||+++||||+|+|+
T Consensus 408 qGt~~~~AmD~~~laiaei~kl~~~q~e~LvN~~~nngLPs~Lt~~rn~~Ld~Gf~~ae~a~As~~SE~q~L~~P~t~~~ 487 (715)
T KOG0222|consen 408 QGTPIGVAMDNLRLAIAEIGKLMFAQFEELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTVHV 487 (715)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCccccCCCCCCcccchhHHHHHHHHHHhhhhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 037382 320 QSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSR 399 (555)
Q Consensus 320 ~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr 399 (555)
+|+++|||||||||.+|+||+.++||++++|+++||+++|||+|||++++..+.++...+.++++.+.. ++.+||
T Consensus 488 ~sas~~nqD~~SlG~~ssRKt~~aVe~lk~m~t~~LvA~CQ~id~rhLe~ll~ta~~~kV~qlaksVl~-----~l~~dR 562 (715)
T KOG0222|consen 488 QSASQHNQDVNSLGLISSRKTLEAVEILKLMSTTELVAACQAIDLRHLEELLKTAVLEKVSQLAKSVLT-----PLHPDR 562 (715)
T ss_pred cchhhhcccchhhcchhhhhHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHHHhhhhHHHHHHHHHHhcc-----ccCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998875 689999
Q ss_pred CCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHHH
Q 037382 400 FCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQT 479 (555)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~a 479 (555)
|+++||.+++++..+|+|.+|||+.+||+|+|+|.++++|++..+..++ +++|.+|..|+.+++..++++.+..|.+
T Consensus 563 f~~~di~avv~re~v~~~ed~~~s~t~P~~qklr~~~~~~a~a~~e~e~---~~~f~ki~af~~e~k~~lPke~e~~r~e 639 (715)
T KOG0222|consen 563 FMEPDILAVVDREYVFSYEDDPWSATYPLMQKLRHVLVDHALALPETEK---NSVFHKIGAFEAELKALLPKEVERVRAE 639 (715)
T ss_pred ccchhHHHHhhhhheeeecCChHHHhhHHHHHHHHHhccccccCCcccc---chhhhccchhHHHHhhcCchhHHHHHHH
Confidence 9999999999999999999999999999999999999999887654442 3789999999999999999999999999
Q ss_pred hhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 037382 480 VENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC 555 (555)
Q Consensus 480 ~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~~ 555 (555)
|++|+.+++|||+.|||||||+|||+|||+.+++|++.++||+++.|||.||++||++||+|+||++|+|.|+|||
T Consensus 640 y~~gt~~~~nrik~crsyplyrfvr~el~t~lltge~v~spge~fdkvf~ai~~gk~idp~~ecl~ewngap~~ic 715 (715)
T KOG0222|consen 640 YENGTSAIANRIKECRSYPLYRFVREELGTELLTGEKVRSPGEEFDKVFTAISEGKLIDPLMECLKEWNGAPISIC 715 (715)
T ss_pred hccCcchhhhHHHHhhcCcHHHHHHHHhcceeccCCccCCchHHHHHHHHHHhcCccccHHHHHHHHcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-123 Score=973.45 Aligned_cols=391 Identities=35% Similarity=0.515 Sum_probs=379.4
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++||||||+++++.|++|||+||+|+||++|||||||||+|||||+++|+|||+++ |+|+++|++|||+
T Consensus 101 m~~r~nsLa~G~SGvr~~vi~~LlalLN~gv~P~iP~~GSVGASGDLapLaHmal~liGeG~a~---~~G~~~~a~~AL~ 177 (498)
T COG2986 101 MALRLNSLARGYSGVRLEVIELLLALLNKGVIPVIPSKGSVGASGDLAPLAHMALALIGEGEAF---YQGERLSAAEALA 177 (498)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCeecCCCCCCCcccccccHHHHHHHHHhcCceee---eCCEeccHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999975 9999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|.+||||||||||++|||+++++++||++|+.++++++|||+|+++|+..+|||+||.+||||||+++|+++
T Consensus 178 ~aglePi~L~aKEGLALiNGTq~~tg~a~lal~~Ae~L~~~A~~~~ALs~Eal~g~~~~fd~~i~~~Rp~~Gq~~~a~~l 257 (498)
T COG2986 178 KAGLEPVTLAAKEGLALINGTQVSTALALLALFRAERLLRTALIAGALSTEALMGSDAPFDERIHALRPHPGQIDVAAAL 257 (498)
T ss_pred HcCCCCcccccccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCccccchHHHHhCCCccHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|++|.||++|+... ..++||||||||+|||||+++|+|+++++.+++|+||+||||||+.+.++|+||||||
T Consensus 258 R~lLagS~~~~~~~--------~~rvQDpySlRc~PQV~GA~~d~l~~~~~~le~ElNsvtDNPlv~~~~~~ViSgGNFh 329 (498)
T COG2986 258 RALLAGSAIRRSHL--------EQRVQDPYSLRCQPQVHGACLDALRQAARVLEIELNSVTDNPLVFGDEEEVISGGNFH 329 (498)
T ss_pred HHHhccCcchhccc--------cccccCcchhhhhHHHHHHHHHHHHHHHHHHhhhhhhcCCCCcccCCCCccccCCCcC
Confidence 99999999987643 3589999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
++||++|||.|++|++++|++|+||+.+|+||.+| |||+||+ ++||+|+|||++||++|||++|||+||+|+|.++.
T Consensus 330 g~pva~A~D~L~iAlae~a~iseRRi~~Lvnp~~s-gLP~FL~--~~~G~nsGfMI~Q~taAAL~sENk~LA~PaSvDs~ 406 (498)
T COG2986 330 GEPVALAADFLAIALAELAAISERRIARLVNPALS-GLPAFLV--PKPGLNSGFMIAQYTAAALVSENKVLAHPASVDSI 406 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhc-cCCcccc--CCCCcccchHHHHHHHHHHHHHHHhhcCCcccCCc
Confidence 99999999999999999999999999999999997 9999999 58999999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcC
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRF 400 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr~ 400 (555)
|++.+||||+|||+.++||+++++||+++|+|||++++|||+|||... .++++++++++.+|++++ ++++||+
T Consensus 407 ptSanqEDhvSm~~~aa~k~~~iien~~~IlaiE~l~AaQa~dlr~~~-~~s~~t~~~~~~vR~~V~------~~~~DR~ 479 (498)
T COG2986 407 PTSANQEDHVSMATHAARKLLEIIENLRTILAIELLAAAQAVDLRAPL-DLSPGTKAAYAAVREKVP------FLDDDRP 479 (498)
T ss_pred cccCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc-ccChHHHHHHHHHHhhCC------ccccCCc
Confidence 999999999999999999999999999999999999999999999754 489999999999999988 7899999
Q ss_pred CHHHHHHHHhhc
Q 037382 401 CEKDLLKAADRE 412 (555)
Q Consensus 401 ~~~~l~~~~~~~ 412 (555)
+.+|++++.+-.
T Consensus 480 ~~~Di~~~~~~l 491 (498)
T COG2986 480 FAPDIEAAAALL 491 (498)
T ss_pred cchhHHHHHHHH
Confidence 999999987754
No 5
>TIGR01225 hutH histidine ammonia-lyase. This enzyme deaminates histidine to urocanic acid, the first step in histidine degradation. It is closely related to phenylalanine ammonia-lyase.
Probab=100.00 E-value=1.2e-119 Score=979.04 Aligned_cols=392 Identities=32% Similarity=0.488 Sum_probs=376.8
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++|||||||||+||||||++|+|||+++ |+|+++++.|||+
T Consensus 98 m~~Rlnsl~~G~SGvr~~vv~~L~~~LN~gi~P~VP~~GSvGaSGDL~pLAhial~LiGeg~v~---~~G~~~~a~eaL~ 174 (506)
T TIGR01225 98 MALRLNSLAKGYSGVRAEVLDQLIALLNAGVHPVVPEKGSVGASGDLAPLAHMALVLMGEGKAF---FKGERMPAAEALA 174 (506)
T ss_pred HHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCceE---ECCEeecHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999864 8999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|++||||||||||++|+|+++++++++++|++++++++||++|+|+|+.++|||++|++||||||+++|++|
T Consensus 175 ~~gl~P~~l~~KEgLALiNGt~~~~a~aalal~~a~~L~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 254 (506)
T TIGR01225 175 AAGLEPVTLAAKEGLALINGTQAMTALALLALFDAEDLLRAADITAALSVEALLGTTKPFDPDIHEARPHRGQIDVAARF 254 (506)
T ss_pred HcCCCCCCCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhCHHHHHhCCChhHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|.+|+||+++.... ..+++||||||||+||||||++|+|++++++|++||||+||||+|++++++++||||||
T Consensus 255 r~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~ve~ElNS~tDNPli~~~~~~v~~gGNFh 327 (506)
T TIGR01225 255 RELLAGSEITLSHR-------DCDRVQDAYSLRCQPQVHGAVLDTLDQVAEVLGIELNSATDNPLVFADGGEVVSGGNFH 327 (506)
T ss_pred HHHhCCCccchhcc-------cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCCc
Confidence 99999999976431 23579999999999999999999999999999999999999999998888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
|++|+++||++++|++++|++++||+.+|+||.+| |||+||+ ++||+++|||++||+++||++|||+||+|+|.+++
T Consensus 328 g~~vala~D~l~iAla~la~~serr~~~L~~p~~s-gLP~fL~--~~~g~~sGf~~~q~taaal~aE~r~La~PaS~~s~ 404 (506)
T TIGR01225 328 GEPVALAADFLAIAIAELGSISERRIERLLDPNLS-GLPPFLA--PDGGLNSGFMIAQYTAAALVSENKALSHPASVDSI 404 (506)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCcc
Confidence 99999999999999999999999999999999997 9999998 47899999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcC
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRF 400 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr~ 400 (555)
|++.+||||||||++||||+.+++|++++|+|||++++|||+|||+. .+.++.++++++.+|+.++ ++++||+
T Consensus 405 pts~~~ED~vSmg~~aar~~~~~v~~~~~ilAiEll~a~QAldlr~~-~~~~~~~~~~~~~vR~~vp------~~~~DR~ 477 (506)
T TIGR01225 405 PTSANQEDHVSMGAHAARKLREMIENVRRVIAIELLAACQGLEFRDP-LKTSAKLEKAYQAVRSVVA------PLDGDRF 477 (506)
T ss_pred cccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHhCC------CCcCCCC
Confidence 99999999999999999999999999999999999999999999974 3468899999999999888 7899999
Q ss_pred CHHHHHHHHhhc
Q 037382 401 CEKDLLKAADRE 412 (555)
Q Consensus 401 ~~~~l~~~~~~~ 412 (555)
+.+||+++.+..
T Consensus 478 ~~~dI~~~~~~l 489 (506)
T TIGR01225 478 FAPDIEAARDLV 489 (506)
T ss_pred cHHHHHHHHHHH
Confidence 999999987754
No 6
>TIGR03832 Tyr_2_3_mutase tyrosine 2,3-aminomutase. Members of this protein family are tyrosine 2,3-aminomutase. It is variable from member to member as to whether the (R)-beta-Tyr or (S)-beta-Tyr is the preferred product from L-Tyr. This enzyme tends to occur in secondary metabolite biosynthesis systems, as in the production of chondramides in Chondromyces crocatus.
Probab=100.00 E-value=1.5e-118 Score=971.79 Aligned_cols=398 Identities=33% Similarity=0.489 Sum_probs=376.7
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+|+|+++ |+|+++++.|||+
T Consensus 96 m~iRln~l~~G~SGvr~~vve~L~~~LN~gi~PvVP~~GSvGaSGDL~pLAhial~L~Geg~v~---~~G~~~~a~eaL~ 172 (507)
T TIGR03832 96 VAARLNALAKGHSAVRPEILERLALYLNLGITPAIPEIGSLGASGDLAPLSHVASTLIGEGYVL---RDGRPVETAQVLR 172 (507)
T ss_pred HHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcCcccchHHHHHHHHHHcCCCcee---ECCEeecHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999864 7999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhh-ccCCccHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHK-LKHHPGQIEAAAI 159 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~-~RphpGQ~~~A~~ 159 (555)
++||+|++|.+||||||||||++|+|+++++++++++|++++++++||++|+|+|+.++|||++|+ +||||||+++|++
T Consensus 173 ~~gl~Pl~L~~KEgLALiNGt~~~~a~aala~~~a~~Ll~~a~~~~Als~Eal~g~~~~f~~~~~~~~RphpGQ~~~A~~ 252 (507)
T TIGR03832 173 ERGIEPLELRFKEGLALINGTSAMTGLGALVVGRALEQVQQAEIVTALVIEALRGSTGPFLAEGHDIARPHPGQIDSAAN 252 (507)
T ss_pred HcCCCCcCCCCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhcCHHHHhhcCCCchHHHHHHH
Confidence 999988999999999999999999999999999999999999999999999999999999999997 6999999999999
Q ss_pred HHHHhcCChhhhhhhhhcc-----------cCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceec
Q 037382 160 MEHILDGSSYVKAAKKLHE-----------IDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDV 228 (555)
Q Consensus 160 ir~lL~gS~l~~~~~~~~~-----------~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~ 228 (555)
||++|+||+++....+... ..+..+++||||||||+||||||++|+|++++++|++||||+||||+|+
T Consensus 253 ir~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~le~ElNs~~DNPli~- 331 (507)
T TIGR03832 253 MRALMRGSGLTVEHADLRREVQERKEAEKSVQRTEIYMQKAYSLRAIPQVLGAVRDTLYHARTKLEIELNSANDNPLFF- 331 (507)
T ss_pred HHHHhccCccchhchhhhccccccccccccccccCCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc-
Confidence 9999999999875432110 0012357999999999999999999999999999999999999999998
Q ss_pred CCCccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 037382 229 SRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSEL 308 (555)
Q Consensus 229 ~~~~v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~ 308 (555)
++++++|||||||+||+++||++++|++++|++++||+.+|+||.+|+|||+||+. ++||+++|||++||++++|++||
T Consensus 332 ~~~~v~sgGNFhg~~va~a~D~L~iAla~la~~serR~~~L~~p~~s~gLP~fL~~-~~~g~~sGfm~~Q~~aaaL~aE~ 410 (507)
T TIGR03832 332 EGREIFHGANFHGQPVAFAMDFVTIALTQLGVLSERRLNRLLNRHLSYGLPEFLVA-GDPGLHSGFAGAQYPATALVAEN 410 (507)
T ss_pred CCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCC-CCCCCCccchHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999998899999985 48899999999999999999999
Q ss_pred hhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhh
Q 037382 309 QFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLT 388 (555)
Q Consensus 309 ~~La~P~s~~~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~ 388 (555)
|+| +|+|.+++|++++||||+|||++||||+.++++++++|+|||++++|||+|||+...++++.++++++.+|+.++
T Consensus 411 r~L-~PaS~~s~pts~~~ED~vSmg~~aark~~~~v~~~~~ilAiEll~aaQAldlr~~~~~~~~~~~~~~~~vr~~vp- 488 (507)
T TIGR03832 411 RTI-GPASTQSVPSNGDNQDVVSMGLIAARNARRVLSNNNKILAVELLAAAQAVDLAGRFDGLSPAARATYEAVRRLVP- 488 (507)
T ss_pred HHh-CCCccCCccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHhCC-
Confidence 999 999999999999999999999999999999999999999999999999999997545678999999999999888
Q ss_pred cCCCCCCCCCcCCHHHHHHHHh
Q 037382 389 VGANGELHPSRFCEKDLLKAAD 410 (555)
Q Consensus 389 ~~~~~~l~~dr~~~~~l~~~~~ 410 (555)
+++.||++.+||+++.+
T Consensus 489 -----~~~~DR~l~~di~~~~~ 505 (507)
T TIGR03832 489 -----TLGVDRYMADDIELVAD 505 (507)
T ss_pred -----CCcCCCCcHHHHHHHHH
Confidence 78999999999998765
No 7
>PRK09367 histidine ammonia-lyase; Provisional
Probab=100.00 E-value=1.6e-117 Score=963.32 Aligned_cols=391 Identities=35% Similarity=0.521 Sum_probs=375.2
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+|||++ +|+|+++++.|||+
T Consensus 101 m~~Rln~l~~G~SGV~~ev~~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~L~Geg~v---~~~G~~~~a~eal~ 177 (500)
T PRK09367 101 MLLRLNSLARGHSGVRPEVIEALLALLNAGVTPVIPEKGSVGASGDLAPLAHMALVLLGEGEA---FYKGERLPAAEALA 177 (500)
T ss_pred HHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCccccccHHHHHHHHHHHhCCCce---eeCCEeecHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999986 48999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++|++|++|++||||||||||++|+|+++++++++++|++++++++||++|+++||.++|||++|++||||||+++|++|
T Consensus 178 ~~gl~p~~l~~KegLALinGt~~~~a~~al~l~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~~~~Rph~Gq~~~A~~l 257 (500)
T PRK09367 178 KAGLEPVTLAAKEGLALINGTQASTALALLGLFDAEDLLAAADVAGALSVEALLGSDAPFDARIHALRGHPGQIDVAANL 257 (500)
T ss_pred HcCCCCcCCCCcchhHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhCHHHHHhCCChhHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|++|+||+++.... ..+++||||||||+||||||++|+|++++++|++||||+||||+|+++ ++++||||||
T Consensus 258 r~lL~gS~l~~~~~-------~~~~vQD~ySlRc~PQv~Ga~~d~l~~~~~~v~~ElNS~~DNPlv~~~-~~v~~gGNF~ 329 (500)
T PRK09367 258 RALLEGSSIITSSH-------DCERVQDPYSLRCQPQVHGACLDQLRYAAEVLEIEANAVTDNPLVFPD-GDVISGGNFH 329 (500)
T ss_pred HHHHcCCccccccc-------CCCcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccCC-CCeeeCCCCC
Confidence 99999999976532 235899999999999999999999999999999999999999999874 7899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
|++|+++||++++|++++|++++||+.+|+||.+| |||+||+ ++|++++|||++||+++||++|||+||+|+|.+++
T Consensus 330 g~~lala~D~L~iAla~la~~serR~~~L~~p~~s-gLp~fL~--~~~g~~~G~~~~q~taaal~ae~r~la~PaS~~s~ 406 (500)
T PRK09367 330 GEPVAFAADFLAIAVAEIGSISERRIARLVDPALS-GLPPFLV--PDPGLNSGFMIAQVTAAALVSENKTLAHPASVDSI 406 (500)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 99999999999999999999999999999999997 9999998 47899999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcC
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRF 400 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr~ 400 (555)
|++.+||||+|||+.||||+.+++|++++|+|||++++|||+|||+. .+.++.++++++.+|+.++ ++++||+
T Consensus 407 pts~~~ED~~Smg~~aark~~~~~~~~~~ilAiell~a~QA~dlr~~-~~~~~~~~~~~~~vr~~vp------~~~~Dr~ 479 (500)
T PRK09367 407 PTSANQEDHVSMGTHAARKLREMAENLRRVLAIELLAAAQGLDFRAP-LKTSPALEAAYALLREKVP------FLDEDRY 479 (500)
T ss_pred CccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCChHHHHHHHHHHhhCC------CCccCCC
Confidence 99999999999999999999999999999999999999999999963 3468899999999999887 7899999
Q ss_pred CHHHHHHHHhhc
Q 037382 401 CEKDLLKAADRE 412 (555)
Q Consensus 401 ~~~~l~~~~~~~ 412 (555)
+.+|++++.+..
T Consensus 480 l~~di~~~~~~l 491 (500)
T PRK09367 480 FAPDIEAAAELV 491 (500)
T ss_pred chHHHHHHHHHH
Confidence 999999988755
No 8
>cd00332 PAL-HAL Phenylalanine ammonia-lyase (PAL) and histidine ammonia-lyase (HAL). PAL and HAL are members of the Lyase class I_like superfamily of enzymes that, catalyze similar beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. PAL, present in plants and fungi, catalyzes the conversion of L-phenylalanine to E-cinnamic acid. HAL, found in several bacteria and animals, catalyzes the conversion of L-histidine to E-urocanic acid. Both PAL and HAL contain the cofactor 3, 5-dihydro-5-methylidene-4H-imidazol-4-one (MIO) which is formed by autocatalytic excision/cyclization of the internal tripeptide, Ala-Ser-Gly. PAL is being explored as enzyme substitution therapy for Phenylketonuria (PKU), a disorder which involves an inability to metabolize phenylalanine. HAL failure in humans results in the disease histidinemia.
Probab=100.00 E-value=1.4e-113 Score=921.97 Aligned_cols=352 Identities=41% Similarity=0.595 Sum_probs=342.3
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++|||||||||+||||||++|+|||+++ |+|+++++.|||+
T Consensus 93 m~~Rln~l~~G~SGV~~~vv~~L~~~lN~~i~P~VP~~GSvGaSGDL~pLahial~l~Geg~v~---~~G~~~~a~eal~ 169 (444)
T cd00332 93 MLLRLNSLARGHSGVRPEVLERLVALLNAGVTPVVPERGSVGASGDLAPLAHIALALIGEGEVF---YKGERMPAAEALA 169 (444)
T ss_pred HHHHHHHhccCCCcCCHHHHHHHHHHHhCCCcccCCCCCCcccccchHHHHHHHHHHcCCCcEE---ECCEEeeHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999864 8999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|++||||||||||++|+|+++++++++++|++++++++||++|+++|+.++|+|++|++||||||+++|++|
T Consensus 170 ~~gl~p~~l~~KegLALingta~~~a~aalal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~~~~~rphpGq~~~A~~l 249 (444)
T cd00332 170 RAGLEPLELGAKEGLALINGTAVMTALAALALHDAERLLDLADIAGALSLEALRGSDAPFDPRIHAARPHPGQIEVAANL 249 (444)
T ss_pred HcCCCCCCCCCcchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhcCHhHHhhCCChhHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|.+|+||++|... +.++++||||||||+||||||++|+|++++++|++||||+||||+|++++++++||||||
T Consensus 250 r~lL~gs~l~~~~-------~~~~~lQDpySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPli~~~~~~v~~ggNF~ 322 (444)
T cd00332 250 RALLAGSSLWESH-------DGERRVQDPYSLRCAPQVHGAARDALRYAARVLEIELNSVTDNPLVDPDNGEVLSGGNFH 322 (444)
T ss_pred HHHhCCCcccccc-------CCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeCCCCceeeCCCcc
Confidence 9999999997422 124689999999999999999999999999999999999999999999888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
+++|+++||++++|++++|++++||+.+|+||.+| |||+||+ ++|+.++|||++||+++||++|||+||+|+|.|++
T Consensus 323 ~~~va~a~D~l~iala~la~~s~rr~~~L~~p~~~-gLp~fL~--~~~g~~~Gf~~~q~~aaal~ae~r~la~P~s~~s~ 399 (444)
T cd00332 323 GQPVALAMDFLAIALAELANLSERRIARLVNPALS-GLPAFLV--ADPGLNSGFMIAQYTAAALVAENKALAHPASVDSI 399 (444)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCChhhC--CCCCcccchHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 99999999999999999999999999999999997 9999998 47899999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLR 365 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR 365 (555)
|++++||||+|||+.||||+.+++|++++|+|||++++|||+|||
T Consensus 400 ~~s~~~ED~~Sm~~~aa~~~~~~v~~~~~ilAiell~a~QA~dlr 444 (444)
T cd00332 400 PTSAGQEDHVSMGLIAARKLREIVDNLRRILAIELLAAAQALDLR 444 (444)
T ss_pred cccCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999997
No 9
>PF00221 Lyase_aromatic: Aromatic amino acid lyase; InterPro: IPR001106 This entry represents phenylalanine ammonia-lyase (PAL; 4.3.1.24 from EC) and the mechanistically related protein histidine ammonia lyase (HAL; 4.3.1.3 from EC). Both contain a catalytic Ala-Ser-Gly triad that is post-translationally cyclised []. PAL is a key biosynthetic catalyst in phenylpropanoid assembly in plants and fungi, and is involved in the biosynthesis of a wide variety of secondary metabolites such as flavanoids, furanocoumarin phytoalexins and cell wall components. These compounds are important for normal growth and in responses to environmental stress. HAL catalyses the first step in histidine degradation, the removal of an ammonia group from histidine to produce urocanic acid. The core domain in PAL and Hal share about 30% sequence identity, with PAL containing an additional approximately 160 residues extending from the common fold [].; GO: 0016841 ammonia-lyase activity, 0009058 biosynthetic process; PDB: 2RJR_A 2RJS_A 2OHY_B 3KDZ_B 2QVE_A 3KDY_A 2NYF_A 2YII_B 1Y2M_B 1T6P_B ....
Probab=100.00 E-value=4.8e-113 Score=925.56 Aligned_cols=372 Identities=38% Similarity=0.582 Sum_probs=336.0
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++||||||||++++|++|||+||+|+||.+|||||||||+||||||++|+|||+++ |+|+++++.|||+
T Consensus 98 m~~Rln~l~~G~SGv~~e~v~~l~~~ln~~i~P~Vp~~GSvGaSGDL~pLahial~l~Geg~v~---~~G~~~~a~eal~ 174 (473)
T PF00221_consen 98 MLLRLNSLARGYSGVRPELVERLVEMLNRGITPVVPERGSVGASGDLAPLAHIALALIGEGEVY---YDGERMPAAEALA 174 (473)
T ss_dssp HHHHHHHHTTSTS---HHHHHHHHHHHHHTEEE-BEEES-SSSSSSHHHHHHHHHHHTTSTTEE---ECTEEEEHHHHHH
T ss_pred HHHHHHHHccCCCccCHHHHHHHHHHHhCCCCceeeCCCCCCccccHHHHHHHHHHHcCCccee---ecceeccHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999974 7999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++++|+++++++++++|++++++++||++||++|+.+||||++|++||||||+++|++|
T Consensus 175 ~~gl~p~~l~~kEgLAlinGt~~~~a~aalal~~a~~ll~~a~~~~Als~Eal~g~~~~f~~~~~~~rph~Gq~~~A~~l 254 (473)
T PF00221_consen 175 RAGLEPLELGPKEGLALINGTAVSTALAALALHDARRLLRLADIVAALSLEALRGNPSPFDPRVHAARPHPGQIESAANL 254 (473)
T ss_dssp HTT-SS---TTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-BCGGG-HHHHHTST-HHHHHHHHHH
T ss_pred hcCcCCeecCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcccCCchHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|++|+||++|.... ++||||||||+||||||++|+|++++++|++||||++|||+|++++++++||||||
T Consensus 255 r~lL~gS~l~~~~~----------~vQDpySlRc~PQv~G~~~d~l~~~~~~v~~ElNs~~DNPlv~~~~~~v~~ggnF~ 324 (473)
T PF00221_consen 255 RELLKGSYLWSSHD----------RVQDPYSLRCAPQVHGAARDALAHAREVVEIELNSATDNPLVFPDDGRVLSGGNFH 324 (473)
T ss_dssp HHHHTT-SSSBHHH----------CSSS-HHHHTHHHHHHHHHHHHHHHHHHHHHHHTS--SSSEEEGGGTEEE-S-TT-
T ss_pred HHhhCCCcCccccc----------ccCCcceeeehHHHhHHHHHHHHHHHHHHHHHHcCCCCCceEecCCCeeeecCCcc
Confidence 99999999987643 59999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
+++++++||++++|++++|++++||+.+|+||.+|+|||+||++ +|+.++|||++||++++|++|||+||+|+|.|++
T Consensus 325 ~~~va~a~D~l~~Ala~l~~~s~rR~~~L~~p~~~~gLP~fL~~--~~g~~~G~~~~q~~aaaL~aE~r~La~P~s~~s~ 402 (473)
T PF00221_consen 325 GQPVALAMDALAIALAHLANLSERRIARLVNPAFNNGLPPFLAA--EPGLNSGFMILQYTAAALVAENRHLANPASIDSI 402 (473)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTS-GGGSS--SCTTB-TTHHHHHHHHHHHHHHHHHTS-SCGGG-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcCCCChhhcC--CCCCCcccchHhHHHHHHHHHHHhhccCcccccc
Confidence 99999999999999999999999999999999998899999995 7899999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHh
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVL 387 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~ 387 (555)
|++++||||+||++.||||+.+++|++++|+|||++++|||+|||+....++++++++++.+|+.++
T Consensus 403 pts~~~ED~~Sm~~~aa~k~~~~v~~~~~ilAiell~a~QA~dlr~~~~~~~~~~~~~~~~~R~~vp 469 (473)
T PF00221_consen 403 PTSGGQEDHVSMGPLAARKLRRIVENLRYILAIELLAAAQALDLRGPERSLGPGTRALYDAVRSVVP 469 (473)
T ss_dssp -BTTTTBSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999997666779999999999999887
No 10
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.77 E-value=9.6e-19 Score=172.81 Aligned_cols=210 Identities=22% Similarity=0.110 Sum_probs=184.5
Q ss_pred HHHHhccCCCccccCCCCceecHHHHHHhcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037382 53 IAGLLTGRPNSKATGPNGETIDAQEASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEV 132 (555)
Q Consensus 53 ia~~l~G~g~~~~~~~~G~~~~a~eal~~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Ea 132 (555)
|..+|+|++... ++|..+++ +.+|++++..|+++++.+.+..++.++.+++.....+.+...|.
T Consensus 16 i~~~L~~~~~~~---~~~~~~~~-------------~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~ 79 (231)
T cd01594 16 VEEVLAGRAGEL---AGGLHGSA-------------LVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEA 79 (231)
T ss_pred HHHHHHHHHHHH---hccccCCC-------------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899986542 44544332 88999999999999999999999999999999999999999999
Q ss_pred hcCCccccchhhhhccCCccHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHH
Q 037382 133 MQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKS 212 (555)
Q Consensus 133 l~g~~~~f~~~i~~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~ 212 (555)
.++++.++++ | + + ...++||+|+|||.||++|+.+|.|..+
T Consensus 80 ~~~~~~~~~t-------h---------------~----q----------~A~p~t~g~~~~~~~~~l~~~~~rL~~~--- 120 (231)
T cd01594 80 HKGTVMPGRT-------H---------------L----Q----------DAQPVTLGYELRAWAQVLGRDLERLEEA--- 120 (231)
T ss_pred hcCCEeeccc-------c---------------c----c----------cCccccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999999988 1 0 0 0247999999999999999999999999
Q ss_pred HHHHhhcCCCCCceecCCCccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcch
Q 037382 213 IEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDY 292 (555)
Q Consensus 213 i~~ElNs~~DNPli~~~~~~v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~ 292 (555)
+++..+|.+++++++++++++.++..+.+|..+ ..|+++. ..+|.+.
T Consensus 121 ------------------------------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~-~~~~~~~--~~~gSS~ 167 (231)
T cd01594 121 ------------------------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGE-LGEPFLP--GQPGSSI 167 (231)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-eeCccCC--CCCCCcC
Confidence 999999999999999999999999999999875 5577775 2567789
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCcccccccc-----cccccccchhHHHHHHHHHHHHHHHHH
Q 037382 293 GFKGAEIAMASYCSELQFLANPVTNHVQSAE-----QHNQDVNSLGLISSRKTAEAVDILKLM 350 (555)
Q Consensus 293 G~~~~q~~~aal~aE~~~La~P~s~~~~~~~-----~~neD~~Sm~~~aar~~~~~v~~l~~i 350 (555)
+++..+..++.++.++..+++|.+..+.++. .+|||.++++...++.+.++.+.+..+
T Consensus 168 mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 168 MPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998776655 789999999999999999999988765
No 11
>PLN02972 Histidyl-tRNA synthetase
Probab=95.76 E-value=0.014 Score=67.62 Aligned_cols=123 Identities=23% Similarity=0.233 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCccccchhhh-hccCCccHHHHHHHHHHHhcCChhhhhhhhhcccCCCCCCCCCccccc
Q 037382 115 ANNLALLSEILSAIFAEVMQGKPEFTDHLTH-KLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALR 193 (555)
Q Consensus 115 a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~-~~RphpGQ~~~A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR 193 (555)
+..|.+..+.++|++||+.+|...+|+-.-. +--...-.+.+|..|.-+|.||+++... +.-+|-
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 103 (763)
T PLN02972 38 ATCLARVVDAVAALSCEAAKADVAAFDVLDSGDGLSDKDEADVAGDMKVLLNGSKLVGKA--------------QAEVFS 103 (763)
T ss_pred hhHHHHHHHHHHhcccHhhhcchhhccCCCCCCCcccccccchhccceeeecccchhhhh--------------HHHHHh
Confidence 3678888999999999999999999986432 2233344678999999999999986532 345677
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037382 194 TSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFS 267 (555)
Q Consensus 194 ~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~ 267 (555)
-+|.++|-.+++++..+..+.+|+||... ...++.+-.| +.+..|+..++++|..|-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 161 (763)
T PLN02972 104 KIPKINGIFREAVKAVHAVVRIELNSPVK----LGKRDAIQTG------------EGLARAVQALGKLSVARAK 161 (763)
T ss_pred cCcccchHHHHHHHHHHHHHHHHhcCccc----ccccCcchhh------------HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999998532 2222222111 2277888888999888753
No 12
>TIGR01226 phe_am_lyase phenylalanine ammonia-lyase. Members of this family are found, so far, in plants and fungi. From phenylalanine, this enzyme yields cinnaminic acid, a precursor of many important plant compounds. This protein shows extensive homology to histidine ammonia-lyase, the first enzyme of a histidine degradation pathway.
Probab=48.25 E-value=3.8e+02 Score=31.66 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHHHhhcCCC
Q 037382 428 LMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTVENGNP 485 (555)
Q Consensus 428 lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~a~~~g~~ 485 (555)
....+.+.|++++....-.....+.+.++.+++|+....+.....|+++|++|+..+.
T Consensus 560 ~~~~~~~~l~~~l~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~~l~~e~~~~~~~~~~ 617 (680)
T TIGR01226 560 ANYPLMQKLRQVLVEHALSNGEREKDLLSSFQKIQVFEAELKAVLPPDVRGARAAGDS 617 (680)
T ss_pred hhHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHhCHHHHHHHHHhccC
Confidence 3445567888875543222222333468889999999999999999999999998554
No 13
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=24.50 E-value=18 Score=36.72 Aligned_cols=28 Identities=36% Similarity=0.627 Sum_probs=23.2
Q ss_pred cCCCcchHHH----HHHHhcCcchhhHHHhhh
Q 037382 518 TSPGEEFDKV----FTAMCQGKIIDPMLECLW 545 (555)
Q Consensus 518 ~T~G~~iskI----YeAIr~G~l~~~l~~cl~ 545 (555)
.-||+.|.|| |||+|+|-+.+.+++.+-
T Consensus 124 ~mpGeKvAKvKVGlYEa~RDGmivnllLEaiP 155 (321)
T COG1441 124 DMPGEKVAKVKVGLYEAVRDGMIVNLLLEAIP 155 (321)
T ss_pred cCCcceeeeeeeeeeeccccchHHHHHHHhCc
Confidence 4567777764 999999999999999865
No 14
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.17 E-value=1e+02 Score=23.75 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCcc
Q 037382 12 YSGIRFEILEAITKLLNHSITP 33 (555)
Q Consensus 12 ~SGvr~e~~~~l~~lLn~~i~P 33 (555)
.+|...+.+.-++++++.||-|
T Consensus 16 ntgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 16 NTGLDRETLSICIELCENGVNP 37 (48)
T ss_pred cCCCCHHHHHHHHHHHHCCCCH
Confidence 6799999999999999999988
Done!