Query 037382
Match_columns 555
No_of_seqs 261 out of 981
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w27_A Phenylalanine ammonia-l 100.0 5E-164 2E-168 1356.4 55.0 553 1-555 160-714 (714)
2 2yii_A Phenylalanine ammonia-l 100.0 1E-160 4E-165 1328.2 51.8 543 1-554 153-701 (705)
3 1y2m_A Phenylalanine ammonia-l 100.0 1E-152 4E-157 1267.3 47.5 524 1-545 169-716 (716)
4 3unv_A ADMH; MIO, lyase; HET: 100.0 7E-123 2E-127 1007.0 38.5 399 1-412 125-532 (547)
5 2nyn_A Phenylalanine/histidine 100.0 4E-122 1E-126 1004.2 37.6 409 1-412 125-547 (565)
6 1gkm_A Histidase, HAL, histidi 100.0 4E-122 1E-126 996.8 35.4 390 1-412 100-490 (507)
7 2o6y_A Putative histidine ammo 100.0 4E-121 1E-125 992.5 40.4 399 1-412 107-515 (521)
8 2qve_A Tyrosine aminomutase; M 100.0 8E-121 3E-125 990.5 40.3 398 1-412 99-508 (526)
9 1gkm_A Histidase, HAL, histidi 20.4 1.5E+02 0.0051 32.1 6.6 43 492-538 455-497 (507)
10 2qve_A Tyrosine aminomutase; M 18.6 43 0.0015 36.5 1.8 47 492-542 473-519 (526)
No 1
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO; HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Probab=100.00 E-value=5e-164 Score=1356.40 Aligned_cols=553 Identities=86% Similarity=1.310 Sum_probs=534.8
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++|||| |||+||||||++|+|||+++.++|+|+++|+.|||+
T Consensus 160 MllRlnsL~~G~SGVr~evve~L~~lLN~gi~P~VP~~GSVG--GDLaPLAhial~LiGeg~~~~v~~~G~~~~a~eAL~ 237 (714)
T 1w27_A 160 MLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTIT--XDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFK 237 (714)
T ss_dssp HHHHHHTTTTSCSCCCHHHHHHHHHHHHTTCEECCBSSCCCS--SCHHHHHHHHHHHTTCTTCCEECTTSCEECHHHHHH
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHhCCCccccCCCCCcc--ccchHHHHHHHHHhCCCcccccccCCccccHHHHHH
Confidence 799999999999999999999999999999999999999999 999999999999999999776789999999999999
Q ss_pred hcCCC--CcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHH
Q 037382 81 QAGFG--FFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA 158 (555)
Q Consensus 81 ~~gl~--p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~ 158 (555)
++||+ |++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|++++|||++|++||||||+++|+
T Consensus 238 ~aGl~~~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~v~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~ 317 (714)
T 1w27_A 238 LAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAA 317 (714)
T ss_dssp HHTCSSSCCCCCTTHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTTCCHHHHHHHH
T ss_pred HcCCCCCCCCCCCcchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhhChHHHhhCCChhHHHHHH
Confidence 99997 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCC
Q 037382 159 IMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGN 238 (555)
Q Consensus 159 ~ir~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGN 238 (555)
+||++|+||+++....+.++.++.++++||||||||+||||||++|+|++++++|++||||+||||+||+++++++||||
T Consensus 318 ~ir~lL~gS~l~~~~~~~~~~~~~~~rvQD~YSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGN 397 (714)
T 1w27_A 318 IMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGN 397 (714)
T ss_dssp HHHHHHHTCSSCCCCCSSCSSCCCCSSSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHTTSCCCSSEEETTTTEEECCCT
T ss_pred HHHHHhCccchhhhcccccccCcccCcCcCcceecchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCceeeCCC
Confidence 99999999999876543334455567999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccc
Q 037382 239 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 318 (555)
Q Consensus 239 F~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~ 318 (555)
|||+||+++||++++|++++|+++|||+++|+||.+|+|||+||+++++||+|||||++||++|||++|||+||+|+|+|
T Consensus 398 Fhg~pvA~AmD~L~iAla~lg~lserR~~~Lvdp~~~~GLP~fL~~~~~~glnsGfmi~Q~taAal~sEnk~LA~PaSvd 477 (714)
T 1w27_A 398 FQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNH 477 (714)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCCSSCGGGCCTTHHHHHHHHHHHHHHHHHTSCSTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999988999999976789999999999999999999999999999999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 037382 319 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPS 398 (555)
Q Consensus 319 ~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~d 398 (555)
++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+++.++++.+++.+++++++++.++.++.+.+.
T Consensus 478 s~pts~~qEDhvSmg~~aArk~~~~venl~~vlAiELl~a~QAiDlR~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~ 557 (714)
T 1w27_A 478 VQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPS 557 (714)
T ss_dssp CCCBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTTTBCCSSC
T ss_pred CccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHH
Q 037382 399 RFCEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQ 478 (555)
Q Consensus 399 r~~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~ 478 (555)
|++++|+.+++++.++|+|++|||+.+||+|+|++++|+||++++++.++...+++|++|..|+++++++|+++|+++|+
T Consensus 558 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~ 637 (714)
T 1w27_A 558 RFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARA 637 (714)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTSTTCTTSHHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhhhHHHHhhcCcccccchHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988766666667778999999999999999999999999
Q ss_pred HhhcCCCCCCccccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCCC
Q 037382 479 TVENGNPTIPNRIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPIC 555 (555)
Q Consensus 479 a~~~g~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~~ 555 (555)
+|++|+.++|++|++|||||||+|||+|||||||+|++.+|||+||||||||||+|+|++|||+||++|+|.|+|||
T Consensus 638 ~f~~g~~~~~~~i~~~~s~~lY~fVR~~Lg~~~~~g~~~~~~g~~~~~i~~ai~~g~~~~~l~~~~~~~~~~~~~~~ 714 (714)
T 1w27_A 638 ALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC 714 (714)
T ss_dssp HHHTTCCSSCCGGGGSTTHHHHHHHHTTSCCCCCCTTSSCCHHHHHHHHHHHHHTTTTHHHHHHTTTTCCSSCCCCC
T ss_pred HHhcCCcCccchhhcCCchhHHHHHHHHcCCCcccCCCCCCCchhHHHHHHHHHCCccHHHHHHHHhhhcCCCCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999998
No 2
>2yii_A Phenylalanine ammonia-lyase; HET: MDO; 2.18A {Taxus wallichiana var} PDB: 3nz4_A*
Probab=100.00 E-value=1.1e-160 Score=1328.17 Aligned_cols=543 Identities=48% Similarity=0.804 Sum_probs=504.1
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++||| ||||+||||||++|+|||+++++.|+|+++|+.|||+
T Consensus 153 MllRlnsL~~G~SGVr~evve~L~~lLN~~I~P~VP~~GSV--SGDLaPLAhial~LiGeG~v~~~~~~G~~~~a~eAL~ 230 (705)
T 2yii_A 153 MLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSV--SXDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALS 230 (705)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHTTEEECBCSCCCC--SSCHHHHHHHHHHHTTCTTCEEEESSSCEEEHHHHHH
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHhCCCccccCCCCCc--ccchhHHHHHHHHHhCCCCeeeeccCCEEeeHHHHHH
Confidence 79999999999999999999999999999999999999999 8999999999999999999876679999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++||||||+++|++|
T Consensus 231 ~aGl~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~RpHpGQ~~~A~~i 310 (705)
T 2yii_A 231 RVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELL 310 (705)
T ss_dssp HTTCCCCCCCTTHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGGCHHHHHTSCCHHHHHHHHHH
T ss_pred HcCCCCccCCcchHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHhhHHHHhcCCChhHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCCC
Q 037382 161 EHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQ 240 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF~ 240 (555)
|++|+||+++....+.++.++.++++||||||||+||||||++|+|++++++|++||||+||||+||+++|+++||||||
T Consensus 311 r~lL~gS~l~~~~~~~~~~~~~~~rvQDpYSlRc~PQV~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sGGNFh 390 (705)
T 2yii_A 311 EWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQ 390 (705)
T ss_dssp HHHHTTCHHHHHHHHHHHTTGGGSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEEGGGTEEECCCTTC
T ss_pred HHHhCcCcchhhhhhccccccccCcCcCCceeechhhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCCcc
Confidence 99999999987665333444445699999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCccccc
Q 037382 241 GTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQ 320 (555)
Q Consensus 241 ~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~~ 320 (555)
|+||+++||++++|++++|+++|||+.+|+||.+|+|||+||+++++||+|||||++||++|||++|||+||+|+|+|++
T Consensus 391 g~pvalamD~L~iAla~lg~lserR~~~Lvdp~~n~GLP~fL~~~~~~GlnsGfmi~Q~taAal~sEnk~LA~PaSvds~ 470 (705)
T 2yii_A 391 GSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVH 470 (705)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCGGGCCCSSGGGCCTTHHHHHHHHHHHHHHHHHTSCSGGGCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCccCCc
Confidence 99999999999999999999999999999999998899999996568999999999999999999999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCcC
Q 037382 321 SAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSRF 400 (555)
Q Consensus 321 ~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr~ 400 (555)
|+++|||||||||++||||+.+++||+++|+||||+++|||+|||+++.++.+.++..++++++++ + +.++
T Consensus 471 pts~~qED~vSmg~~aArk~~~~venl~~vlAiELl~a~QAidlR~~~~~~~~~~~~~~~~~~~~~------~-l~~~-- 541 (705)
T 2yii_A 471 SAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADEC------G-LPND-- 541 (705)
T ss_dssp CBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-CCHH--
T ss_pred ccccCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHh------C-CChh--
Confidence 999999999999999999999999999999999999999999999999999999999999998876 1 5554
Q ss_pred CHHHHHHHHhhccchhcccCCCCCchHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHHHHhHhHHHHHHHHHHh
Q 037382 401 CEKDLLKAADREHVFAYIDDPCSATYPLMQKLRQVLVEHALNNGENEKNANSSIFQKIAAFEEELKAVLPKEVENARQTV 480 (555)
Q Consensus 401 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lm~~~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~el~~~L~~~~~~~R~a~ 480 (555)
+++|+.++++++++|+|++|||+.+||+|+|++++|+||++++++.++...++.|++|..|+++++++|+++|+++|++|
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~r~~~ 621 (705)
T 2yii_A 542 TKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHKKDGIETDTLVDRLAEFEKRLSDRLENEMTAVRVLY 621 (705)
T ss_dssp HHHHHHHHHHHSCGGGTTTCTTCTTSHHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhhccccccccHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999877666667778999999999999999999999999999
Q ss_pred h-cCCCCCCc-----cccccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHHhhhhccCCCCCC
Q 037382 481 E-NGNPTIPN-----RIKECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLWEWNGAPLPI 554 (555)
Q Consensus 481 ~-~g~~~~~~-----~ilg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~cl~~~~~~p~~~ 554 (555)
+ +|+.++|| ||++|||||||+|||+|||||||+|++.+|||+||||||||||+|++++|||+||++|+|+|+|+
T Consensus 622 ~~~~~~~~~n~~~~~ri~~~~S~~lY~FVR~eLG~p~l~G~~~~~~g~~~~~v~~ai~~g~~~~~l~~~~~~~~~~~~~~ 701 (705)
T 2yii_A 622 EKKGHKTADNNDALVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLGQPNGC 701 (705)
T ss_dssp HC------------CGGGGSTTHHHHHHHHTTTTCCCCSTTCCSCHHHHHHHHHHHHHTTTTHHHHHHHTTTCC------
T ss_pred HhcCCCCCCccchhhhhhccCchhHHHHHHHHcCCCccCCCCCCCCCccHHHHHHHHHCCccHHHHHHHHHhhcCCCccc
Confidence 9 89888999 99999999999999999999999999999999999999999999999999999999999999997
No 3
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A {Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Probab=100.00 E-value=1.3e-152 Score=1267.31 Aligned_cols=524 Identities=39% Similarity=0.574 Sum_probs=488.1
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCcccc---CCCCceecHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAT---GPNGETIDAQE 77 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~---~~~G~~~~a~e 77 (555)
|++|+|+|++|||||||+++|+|++|||+||+|+||++|||||||||+||||||++|+|||+++.. ..+|+++|+.|
T Consensus 169 MllRlnsL~~G~SGVr~evle~L~~lLN~~i~P~VP~~GSVGASGDLaPLAhial~LiGeg~v~~~~~~~~~G~~~~a~e 248 (716)
T 1y2m_A 169 MTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYARE 248 (716)
T ss_dssp HHHHHHHHTTSSSCCCHHHHHHHHHHHHTTCEECCBSSCCCC-CBSHHHHHHHHHHHTTCTTCEEEEEETTEEEEEEHHH
T ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHhCCCeeccCCCCCCCccccHHHHHHHHHHHcCCCCeEEecccCCCCeEeeHHH
Confidence 799999999999999999999999999999999999999999999999999999999999997521 01599999999
Q ss_pred HHHhcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhc-cCCccHHHH
Q 037382 78 ASKQAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEA 156 (555)
Q Consensus 78 al~~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~-RphpGQ~~~ 156 (555)
||+++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++ ||||||+++
T Consensus 249 AL~~aGl~Pl~L~~KEGLALiNGTa~~ta~aalal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~~RpHpGQ~~~ 328 (716)
T 1y2m_A 249 AMALFNLEPVVLGPKEGLGLVNGTAVSASMATLALHDAHMLSLLSQSLTAMTVEAMVGHAGSFHPFLHDVTRPHPTQIEV 328 (716)
T ss_dssp HHHHTTCCCCCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCGGGTTTTSCCHHHHHH
T ss_pred HHHHcCCCCccCCCchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhCHHHHhccCCCchHHHH
Confidence 9999999889999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhcCChhhhhhhhhcccC-CCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHh-hcCCCCCceecCCCccc
Q 037382 157 AAIMEHILDGSSYVKAAKKLHEID-PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREI-NSVNDNPLIDVSRNKAL 234 (555)
Q Consensus 157 A~~ir~lL~gS~l~~~~~~~~~~~-~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~El-Ns~~DNPli~~~~~~v~ 234 (555)
|++||++|+||+++....+.++.+ +.++++||||||||+||||||++|+|++++++|++|| ||+||||+||+++|+++
T Consensus 329 A~~ir~lL~gS~l~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~El~NS~tDNPlI~~~~g~v~ 408 (716)
T 1y2m_A 329 AGNIRKLLEGSRFAVHHEEEVKVKDDEGILRQDRYPLRTSPQWLGPLVSDLIHAHAVLTIEAGQSTTDNPLIDVENKTSH 408 (716)
T ss_dssp HHHHHHHHTTCSSSBCHHHHC----CCCCCCSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSEEETTTTEEE
T ss_pred HHHHHHHhccCcchhhhhhhcccccccCCcCcCccchhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeCCCCeee
Confidence 999999999999988654333333 2356999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCC
Q 037382 235 HGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANP 314 (555)
Q Consensus 235 ~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P 314 (555)
|||||||+||+++||++++|++++|+++|||+.+|+||.+|+|||+||+++ +||+|||||++||++|||++|||+||+|
T Consensus 409 sGGNFhg~~va~amD~l~iAla~lg~lserR~~~Lvnp~~~~GLP~fL~~~-~~glnsG~m~~q~taAal~sE~k~LA~P 487 (716)
T 1y2m_A 409 HGGNFQAAAVANTMEKTRLGLAQIGKLNFTQLTEMLNAGMNRGLPSCLAAE-DPSLSYHCKGLDIAAAAYTSELGHLANP 487 (716)
T ss_dssp CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTSTTCCGGGCSS-CGGGCCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhhCCC-CCCcCcchHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999988999999874 7999999999999999999999999999
Q ss_pred CcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 037382 315 VTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGE 394 (555)
Q Consensus 315 ~s~~~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 394 (555)
+|+|++|+++|||||||||++||||+.+++|++++|+||||+++|||+|||+++++|...++..+.++.++++.
T Consensus 488 aSvds~pts~~~ED~vSmg~~aArk~~~~venl~~vlAiEll~a~QAidlR~~~~~~~~~~~~~~~~~~~~~~~------ 561 (716)
T 1y2m_A 488 VTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATHLYCVLQAIDLRAIEFEFKKQFGPAIVSLIDQHFG------ 561 (716)
T ss_dssp SGGGCCCBTTTTBSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred CCCCcCCHHHHH-HHHhhccchhcccC--CCCCchHHHHH-------HHHHHHHHHhhcCCCCCCCcchhhhhHHHHHHH
Q 037382 395 LHPSRFCEKDLL-KAADREHVFAYIDD--PCSATYPLMQK-------LRQVLVEHALNNGENEKNANSSIFQKIAAFEEE 464 (555)
Q Consensus 395 l~~dr~~~~~l~-~~~~~~~~~~~~~~--~~~~~~~lm~~-------~~~vll~~~l~~~~~~~~~~~~~~~~I~~f~~e 464 (555)
.|++++|+. ++.+.. |.++++ +|+.+||+|+| ++++|+||+ +++ ++.|++|..|+++
T Consensus 562 ---~~~~~~~l~~~~~~~~--~~~~~~~~~~t~~~~l~~r~~~~~~~~~~~l~~~~-~~~-------~~~~~~i~~f~~~ 628 (716)
T 1y2m_A 562 ---SAMTGSNLRDELVEKV--NKTLAKRLEQTNSYDLVPRWHDAFSFAAGTVVEVL-SST-------SLSLAAVNAWKVA 628 (716)
T ss_dssp ---TTTTTSSHHHHHHHHH--HHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHT-TTS-------CCBHHHHHHHHHH
T ss_pred ---ccCCHHHHHHHHHHHH--HHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHH-hcc-------ccHHHHHHHHHHH
Confidence 477788888 888755 666666 77899999997 789999985 321 4669999999999
Q ss_pred HHhHhHHHHHHHHHHhhcC---CCCCCccccccCcchhHHHhhhhcCcccccC-----ccccCCCcchHHHHHHHhcCcc
Q 037382 465 LKAVLPKEVENARQTVENG---NPTIPNRIKECRSYPLYRLVREELGTNFLTG-----EKVTSPGEEFDKVFTAMCQGKI 536 (555)
Q Consensus 465 l~~~L~~~~~~~R~a~~~g---~~~~~~~ilg~~S~~LY~FVR~eLgvp~~~G-----~~~~T~G~~iskIYeAIr~G~l 536 (555)
++++|.++|+++|++|++| ..++++ ++||||||||+|||+|||||||+| ++++|||+||||||||||+|+|
T Consensus 629 l~~~l~~~~~~~R~~f~~~~~~~~~~~~-~lg~~S~plY~fVR~eLg~~~~~G~~~~g~~~~t~g~~~~~v~~ai~~g~~ 707 (716)
T 1y2m_A 629 AAESAISLTRQVRETFWSAASTSSPALS-YLSPRTQILYAFVREELGVKARRGDVFLGKQEVTIGSNVSKIYEAIKSGRI 707 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCGGGG-TSCTTHHHHHHHHHTTSCCCCCCCHHHHTSCCSCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccchh-hhcccchHHHHHHHHHcCCCccccccccCCCCCCCcccHHHHHHHHHcCcc
Confidence 9999999999999999988 456786 669999999999999999999996 8899999999999999999999
Q ss_pred hhhHHHhhh
Q 037382 537 IDPMLECLW 545 (555)
Q Consensus 537 ~~~l~~cl~ 545 (555)
++|||+||+
T Consensus 708 ~~~~~~~~~ 716 (716)
T 1y2m_A 708 NNVLLKMLA 716 (716)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhC
Confidence 999999985
No 4
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Probab=100.00 E-value=6.9e-123 Score=1007.05 Aligned_cols=399 Identities=29% Similarity=0.453 Sum_probs=379.6
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++||||| ||+||||||++|+|||+++ |+|+++|+.|||+
T Consensus 125 mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPLahial~LiGeg~v~---~~G~~~~a~eaL~ 199 (547)
T 3unv_A 125 MLARIVSLSRGNSAISIVNFKKLIEIYNQGIVPCIPEKGSLGX--DLGPLAAIALVCTGQWKAR---YQGEQMSGAMALE 199 (547)
T ss_dssp HHHHHHHHHTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHHHHHHHHHTTCSEEE---ETTEEEEHHHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHHHHhCCCcccCCCCCCCCc--cchHHHHHHHHHhCCCceE---ECCEEeeHHHHHH
Confidence 7999999999999999999999999999999999999999998 9999999999999999874 7999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++||||||+++|++|
T Consensus 200 ~aGl~Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~ih~~Rph~GQ~~~A~~i 279 (547)
T 3unv_A 200 KAGISPMELSFKEGLALINGTSAMVGLGVLLYDEVKRLFDTYLTVTSLSIEGLHGKTKPFEPAVHRMKPHQGQLEVATTI 279 (547)
T ss_dssp HHTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHHHTTSCCHHHHHHHHHH
T ss_pred HcCCCCccCCcchHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcChHHHhhCCCchHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhhhhc-----ccC----CCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCC
Q 037382 161 EHILDGSSYVKAAKKLH-----EID----PLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN 231 (555)
Q Consensus 161 r~lL~gS~l~~~~~~~~-----~~~----~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~ 231 (555)
|++|+||+++....+.+ +.+ ...+++||||||||+||||||++|+|++++++|++||||+||||+||+++|
T Consensus 280 r~lL~gS~l~~~~~~~r~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~g 359 (547)
T 3unv_A 280 WETLADSSLAVNEHEVEKLIAEEMDGLVKASNHQIEDAYSIRCTPQILGPVADTLKNIKQTLTNELNSSNDNPLIDQTTE 359 (547)
T ss_dssp HHHTTTCSSSBCHHHHHHHHHHHCSSSCCCCSCCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSEEETTTT
T ss_pred HHHhcCCcccccccccccccccccccccccccCcCcCCccccchhHHhHHHHHHHHHHHHHHHHHHccCCCCCceeCCCC
Confidence 99999999987654321 111 123569999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhc
Q 037382 232 KALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFL 311 (555)
Q Consensus 232 ~v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~L 311 (555)
+++|||||||+||+++||++++|++++|+++|||+.+|+||.+|+|||+||++ ++||+|+|||++||++|||++|||+|
T Consensus 360 ~v~sgGNFhg~pva~amD~l~iAla~lg~iserR~~~Lvnp~~s~GLP~fL~~-~~~glnsGfmi~Q~taaal~sE~k~L 438 (547)
T 3unv_A 360 EVFHNGHFHGQYVSMAMDHLNIALVTMMNLANRRIDRFMDKSNSNGLPPFLCA-ENAGLRLGLMGGQFMTASITAESRAS 438 (547)
T ss_dssp EEECCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCCGGGCC-SSBTTBCTTTTHHHHHHHHHHHHHHT
T ss_pred ceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCChhhcC-CCCCcccccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998899999995 27999999999999999999999999
Q ss_pred cCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCC
Q 037382 312 ANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGA 391 (555)
Q Consensus 312 a~P~s~~~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~ 391 (555)
|+|+|+|++|+++|||||||||++||||+.+++||+++|+||||+++|||+|||.. .+.++.++++++.+|+.++
T Consensus 439 a~PaSvds~pts~~qED~vSmg~~aArk~~~~ven~~~vlAiEll~a~QAidlr~~-~~~s~~~~~~~~~vR~~Vp---- 513 (547)
T 3unv_A 439 CMPMSIQSLSTTGDFQDIVSFGLVAARRVREQLKNLKYVFSFELLCACQAVDIRGT-AGLSKRTRALYDKTRTLVP---- 513 (547)
T ss_dssp CCCSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-TTCCHHHHHHHHHHHTTSC----
T ss_pred cCCCccCCccccCcchhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHhCC----
Confidence 99999999999999999999999999999999999999999999999999999964 4689999999999999887
Q ss_pred CCCCCCCcCCHHHHHHHHhhc
Q 037382 392 NGELHPSRFCEKDLLKAADRE 412 (555)
Q Consensus 392 ~~~l~~dr~~~~~l~~~~~~~ 412 (555)
++++||++.+||+++.+..
T Consensus 514 --~~~~DR~l~~dI~~~~~~i 532 (547)
T 3unv_A 514 --YLEEDKTISDYIESIAQTV 532 (547)
T ss_dssp --CCSSCCCCHHHHHHHHHHT
T ss_pred --CccCCCCChHHHHHHHHHH
Confidence 7899999999999998866
No 5
>2nyn_A Phenylalanine/histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.90A {Anabaena variabilis} PDB: 3czo_A* 2nyf_A*
Probab=100.00 E-value=4e-122 Score=1004.18 Aligned_cols=409 Identities=35% Similarity=0.482 Sum_probs=381.3
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++||||| ||+||||||++|+|||+++.++|+|+++++.|||+
T Consensus 125 mllRlnsL~~G~SGVr~evve~L~~lLN~~i~P~VP~~GSVGA--DLaPLAhial~LiGeg~~~~v~~~G~~~~a~eaL~ 202 (565)
T 2nyn_A 125 MLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGX--DLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALR 202 (565)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEESCCSS--CHHHHHHHHHHHTTCCTTSEEEETTEEEEHHHHHH
T ss_pred HHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCccc--hHHHHHHHHHHHhCCCCCceEEECCEEeeHHHHHH
Confidence 7999999999999999999999999999999999999999998 99999999999999999444468999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++||||||+++|++|
T Consensus 203 ~aGl~Pl~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~A~~~~Als~Eal~G~~~~fd~~ih~~Rph~GQ~~~A~~i 282 (565)
T 2nyn_A 203 QLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQM 282 (565)
T ss_dssp HTTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCHHHHHTSCCHHHHHHHHHH
T ss_pred HcCCCCccCCCchhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhCHHHHHhCCCchHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhh-hhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCC
Q 037382 161 EHILDGSSYVKAAK-KLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNF 239 (555)
Q Consensus 161 r~lL~gS~l~~~~~-~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF 239 (555)
|++|+||+++.... +.+. ...++++||||||||+||||||++|+|++++++|++||||+||||+||+++|+++|||||
T Consensus 283 r~lL~gS~l~~~~~~~~~~-~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPlI~~~~g~v~sgGNF 361 (565)
T 2nyn_A 283 ISLLANSQLVRDELDGKHD-YRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNF 361 (565)
T ss_dssp HHHHTTCSSSBCCTTCC---------CCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSSSEEEGGGTEEECCCTT
T ss_pred HHHhccCcccccccccccc-ccCCCcCcCCcccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCeeccCCCc
Confidence 99999999986510 0000 012458999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCC-Cccc
Q 037382 240 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANP-VTNH 318 (555)
Q Consensus 240 ~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P-~s~~ 318 (555)
||+||+++||++++|++++|+++|||+.+|+||.+|+|||+||+++++||+|+|||++||++|||++|||+||+| +|.|
T Consensus 362 hg~~va~a~D~l~iAla~lg~lserR~~~Lvdp~~s~GLP~fL~~~~~~glnsGfmi~q~taaal~sE~k~La~P~aSvd 441 (565)
T 2nyn_A 362 LGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRF 441 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCCGGGCSCTTSTTCCTTHHHHHHHHHHHHHHHHHTSCCGGGC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCChhhcCCCCCCcccchHHHHHHHHHHHHHHHHhcCCCeecc
Confidence 999999999999999999999999999999999998899999996433999999999999999999999999999 9999
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh--------hhhhhHHHHHHHHHHHHHh---
Q 037382 319 VQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE--------ENLKHTVKDTVSQVARKVL--- 387 (555)
Q Consensus 319 ~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~--------~~~~~~~~~~~~~l~~~~~--- 387 (555)
++|+++|||||||||++||||+.+++||+++|+|||++++|||+|||+.+ .+.++.++++++.+|+.++
T Consensus 442 s~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~~~~~~~~~~~~~~~~~~~~~~~vR~~vp~~~ 521 (565)
T 2nyn_A 442 PTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTGHYDARACLSPATERLYSAVRHVVGQKP 521 (565)
T ss_dssp CTTTTTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCGGGTSCHHHHHHHHHHHHHHTCCC
T ss_pred cccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCChhHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999631 5689999999999999988
Q ss_pred -hcCCCCCCCCCcCCHHHHHHHHhhc
Q 037382 388 -TVGANGELHPSRFCEKDLLKAADRE 412 (555)
Q Consensus 388 -~~~~~~~l~~dr~~~~~l~~~~~~~ 412 (555)
...+.+++++||++.+||+++.+..
T Consensus 522 ~~~~~~~~~~~DR~l~~di~~~~~~i 547 (565)
T 2nyn_A 522 TSDRPYIWNDNEQGLDEHIARISADI 547 (565)
T ss_dssp BTTBCSCCCGGGCCHHHHHHHHHHHH
T ss_pred cccccCCCCCCCcccHHHHHHHHHHH
Confidence 3556778999999999999988755
No 6
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=100.00 E-value=4.4e-122 Score=996.82 Aligned_cols=390 Identities=29% Similarity=0.441 Sum_probs=376.7
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++|||| |||+|||||+++|+|||+++ |+|+++|+.|||+
T Consensus 100 m~~RlnsL~~G~SGVr~evv~~l~~~LN~~i~P~VP~~GSvG--GDLapLahial~LiGeg~v~---~~G~~~~a~eaL~ 174 (507)
T 1gkm_A 100 MVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVG--XDLAPLAHMSLVLLGEGKAR---YKGQWLSATEALA 174 (507)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHTEEECCEEECCCC--CSHHHHHHHHHGGGTCSEEE---ETTEEEEHHHHHH
T ss_pred HHHHHHHHccCcCcCcHHHHHHHHHHHHCCCcccCCCCCCcc--hhhHHHHHHHHHHcCCCcee---ECCEEeeHHHHHH
Confidence 799999999999999999999999999999999999999999 99999999999999999964 8999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++|+|+++++++++++|++++++++||++||++|+.++|||++|++||||||+++|++|
T Consensus 175 ~~Gl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~i~~~Rph~GQ~~~A~~l 254 (507)
T 1gkm_A 175 VAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACF 254 (507)
T ss_dssp HTTCCCCCCCTTHHHHHHSBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSGGGCHHHHHHHCCHHHHHHHHHH
T ss_pred HcCCCCCCCCcchhHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHHHHhccCchHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-cCChhhhhhhhhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCCccccCCCC
Q 037382 161 EHIL-DGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNF 239 (555)
Q Consensus 161 r~lL-~gS~l~~~~~~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~~v~~gGNF 239 (555)
|++| +||+++.... .++++||||||||+||||||++|+|++++++|++|+||+||||+|++++|+++|||||
T Consensus 255 r~lL~~gS~l~~~~~-------~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~~~~~~v~sgGNF 327 (507)
T 1gkm_A 255 RDLLGDSSEVSLSHK-------NADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNF 327 (507)
T ss_dssp HHHHCSCCHHHHHTT-------TGGGSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSEEETTTTEEECCCTT
T ss_pred HHHHHcCChhhhccC-------CCCcCcCCcccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCCeeeCCCCccccCCcc
Confidence 9999 9999987542 1358999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhccCCCcccc
Q 037382 240 QGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHV 319 (555)
Q Consensus 240 ~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La~P~s~~~ 319 (555)
||+||+++||++++|++++|+++|||+.+|+||.+| |||+||+ ++||+|+|||++||++|||++|||+||+|+|+|+
T Consensus 328 hg~~va~a~D~l~iAla~l~~iserR~~~L~d~~~s-gLP~fL~--~~~glnsGfmi~q~taaal~sE~k~La~PaSvds 404 (507)
T 1gkm_A 328 HAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMS-QLPPFLV--ENGGVNSGFMIAQVTAAALASENKALSHPHSVDS 404 (507)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-SSCGGGC--SSTTTCCTTHHHHHHHHHHHHHHHHHTSCSTTCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCChhhc--CCCCcCccchHHHHHHHHHHHHHHHhcCCcccCC
Confidence 999999999999999999999999999999999997 9999998 4799999999999999999999999999999999
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 037382 320 QSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLTVGANGELHPSR 399 (555)
Q Consensus 320 ~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~dr 399 (555)
+|+++|||||||||++||||+.+++||+++|+|||++++|||+|||+ ..+.++.++++++.+|++++ ++++||
T Consensus 405 ~pts~~qED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~-~~~~~~~~~~~~~~vR~~vp------~~~~DR 477 (507)
T 1gkm_A 405 LPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRK-GLKTSAKLEKARQALRSEVA------HYDRDR 477 (507)
T ss_dssp CCBTTTTBCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TCCCCHHHHHHHHHHHTTSC------CCCSCC
T ss_pred ccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCCChHHHHHHHHHHHhCC------CccCCc
Confidence 99999999999999999999999999999999999999999999996 45689999999999999887 789999
Q ss_pred CCHHHHHHHHhhc
Q 037382 400 FCEKDLLKAADRE 412 (555)
Q Consensus 400 ~~~~~l~~~~~~~ 412 (555)
++.+||+++.+..
T Consensus 478 ~l~~di~~~~~~l 490 (507)
T 1gkm_A 478 FFAPDIEKAVELL 490 (507)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999988755
No 7
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone prosthetic group; HET: MDO; 1.50A {Rhodobacter sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A* 2o7f_A*
Probab=100.00 E-value=3.5e-121 Score=992.47 Aligned_cols=399 Identities=29% Similarity=0.440 Sum_probs=377.5
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++||||| ||+||||||++|+|||+++ .|+|+++++.|||+
T Consensus 107 m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahial~LiGeg~v~--~~~G~~~~a~eaL~ 182 (521)
T 2o6y_A 107 VLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGX--DLTPLAHMVLCLQGRGDFL--DRDGTRLDGAEGLR 182 (521)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHTSSCEECCEEECCCSS--CHHHHHHHHHHHTTSSCEE--CTTCCEECHHHHHH
T ss_pred HHHHHHHHccCCCcCcHHHHHHHHHHHhCCCcccCCCCCCccc--chHHHHHHHHHHcCCCceE--eeCCEEecHHHHHH
Confidence 7999999999999999999999999999999999999999998 9999999999999999963 38999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhccCCccHHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIM 160 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~RphpGQ~~~A~~i 160 (555)
++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++||||||+++|++|
T Consensus 183 ~aGl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~ih~~Rph~GQ~~~A~~i 262 (521)
T 2o6y_A 183 RGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARL 262 (521)
T ss_dssp HTTCCCCCCTTSCGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBGGGGCHHHHHHSCCHHHHHHHHHH
T ss_pred HcCCCCCCCCcchHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHHHhcCCCchHHHHHHHH
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhhhh------hhcccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceecCCC--c
Q 037382 161 EHILDGSSYVKAAK------KLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRN--K 232 (555)
Q Consensus 161 r~lL~gS~l~~~~~------~~~~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~~~~--~ 232 (555)
|++|+||+++.... ..++.++.++++||||||||+||||||++|+|++++++|++||||+||||+ |++++ +
T Consensus 263 r~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~l~~ElNS~tDNPl-~~~~~~~~ 341 (521)
T 2o6y_A 263 RARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPV-FPPDGSVP 341 (521)
T ss_dssp HHHTTTCSSSBCCCGGGCBCCGGGCSBCSSCSSCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSB-CCTTCSSS
T ss_pred HHHhccCccccccccccccccccccccccCcCcCcccccchhhhhHHHHHHHHHHHHHHHHHHhcCCcCCC-CCCCCCce
Confidence 99999999987543 212223335699999999999999999999999999999999999999999 98888 9
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHhhcc
Q 037382 233 ALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLA 312 (555)
Q Consensus 233 v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~~~La 312 (555)
++|||||||+||+++||++++|++++|+++|||+.+|+||.+|+|||+||+. ++||+|||||++||++|||++|||+||
T Consensus 342 v~sgGNFhg~~va~a~D~l~iAla~l~~iserR~~~L~~~~~~~gLP~fL~~-~~~glnsGfm~~q~taaal~sE~k~La 420 (521)
T 2o6y_A 342 ALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHR-GPAGLNSGFMGAQVTATALLAEMRATG 420 (521)
T ss_dssp CBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTTTCCGGGCC-SSBTTBCTTHHHHHHHHHHHHHHHTBC
T ss_pred eccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhcCC-CCCCcccchHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998899999943 589999999999999999999999999
Q ss_pred CCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-hh-hhhHHHHHHHHHHHHHhhcC
Q 037382 313 NPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLE-EN-LKHTVKDTVSQVARKVLTVG 390 (555)
Q Consensus 313 ~P~s~~~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~-~~-~~~~~~~~~~~l~~~~~~~~ 390 (555)
|+|+|++|+++|||||||||++||||+.+++||+++|+|||++++|||+|||... .+ .++.++++++.+|+.++
T Consensus 421 -PaS~ds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiell~a~QAidlr~~~~~~~~~~~~~~~~~~vR~~vp--- 496 (521)
T 2o6y_A 421 -PASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFP--- 496 (521)
T ss_dssp -CSGGGCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHTTSC---
T ss_pred -CCccCcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhHHHHHHHHHHhCC---
Confidence 9999999999999999999999999999999999999999999999999999433 35 78899999999999887
Q ss_pred CCCCCCCCcCCHHHHHHHHhhc
Q 037382 391 ANGELHPSRFCEKDLLKAADRE 412 (555)
Q Consensus 391 ~~~~l~~dr~~~~~l~~~~~~~ 412 (555)
++++||++.+||+++.+..
T Consensus 497 ---~~~~DR~l~~di~~~~~~l 515 (521)
T 2o6y_A 497 ---PLETDRPLGQEIAALATHL 515 (521)
T ss_dssp ---CCSSCCCCHHHHHHHHHHH
T ss_pred ---CccCCcCcHHHHHHHHHHH
Confidence 7899999999999987765
No 8
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=100.00 E-value=8.2e-121 Score=990.52 Aligned_cols=398 Identities=32% Similarity=0.466 Sum_probs=377.5
Q ss_pred CHHHHHHhcCCCCCCCHHHHHHHHHHHhCCCcccCCCCCCCCCccchHHHHHHHHHhccCCCccccCCCCceecHHHHHH
Q 037382 1 MLVRVNTLLQGYSGIRFEILEAITKLLNHSITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGETIDAQEASK 80 (555)
Q Consensus 1 m~iRlnsl~~G~SGvr~e~~~~l~~lLn~~i~P~VP~~GSvGASGDL~pLa~ia~~l~G~g~~~~~~~~G~~~~a~eal~ 80 (555)
|++|+|+|++|||||||+++++|++|||+||+|+||++||||| ||+||||||++|+|||+++ |+|+++|+.|||+
T Consensus 99 m~~RlnsL~~G~SGVr~evve~l~~~LN~~i~P~VP~~GSvGA--DLaPLahial~LiGeg~v~---~~G~~~~a~eaL~ 173 (526)
T 2qve_A 99 VAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGX--DLAPLSHVASTLIGEGYVL---RDGRPVETAQVLA 173 (526)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHTTCEECCEEECCCSS--CHHHHHHHHHHHTTCSEEE---ETTEEEEHHHHHH
T ss_pred HHHHHHHHccCcCCCcHHHHHHHHHHHhCCCccccCCCCCcch--hhHHHHHHHHHHcCCCcee---ECCEeecHHHHHH
Confidence 7999999999999999999999999999999999999999998 9999999999999999864 8999999999999
Q ss_pred hcCCCCcccCCcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCccccchhhhhc-cCCccHHHHHHH
Q 037382 81 QAGFGFFELQPKEGLALVNGTAVGSGLASMVLFDANNLALLSEILSAIFAEVMQGKPEFTDHLTHKL-KHHPGQIEAAAI 159 (555)
Q Consensus 81 ~~gl~p~~L~~KEgLaLinGta~s~a~a~lal~~a~~l~~~a~~~~Als~Eal~g~~~~f~~~i~~~-RphpGQ~~~A~~ 159 (555)
++||+|++|+|||||||||||++|+|+|+++++++++|++++++++||++||++|+.++|||++|++ ||||||+++|++
T Consensus 174 ~~Gl~P~~L~~KEGLALiNGT~~~ta~a~lal~~a~~L~~~a~~~~Als~Eal~G~~~~fd~~ih~~~Rph~GQ~~~A~~ 253 (526)
T 2qve_A 174 ERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAAN 253 (526)
T ss_dssp TTTCCCCCCCTTHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBSGGGCGGGTTTTCCCHHHHHHHHH
T ss_pred HcCCCCCCCCchHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhCHHHHhccCCCchHHHHHHH
Confidence 9999889999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhcCChhhhhhhhhc-----------ccCCCCCCCCCccccccccchhhhHHHHHHHHHHHHHHHhhcCCCCCceec
Q 037382 160 MEHILDGSSYVKAAKKLH-----------EIDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDV 228 (555)
Q Consensus 160 ir~lL~gS~l~~~~~~~~-----------~~~~~~~~~QD~yslR~~PQv~G~~~d~l~~a~~~i~~ElNs~~DNPli~~ 228 (555)
||++|+||+++......+ ..++.++++||||||||+||||||++|+|++++++|++||||+||||+|+
T Consensus 254 lr~lL~gS~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vQD~YSlRc~PQv~Ga~~d~l~~a~~~le~ElNS~tDNPli~- 332 (526)
T 2qve_A 254 MRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFF- 332 (526)
T ss_dssp HHHHHTTCSSSBCHHHHHHHHHHHCCSSCSEECCSCCSSCCGGGTSHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSBCC-
T ss_pred HHHHhccCcccccchhhhcccccccccccccccccCcCcCCeeccchhhhhHHHHHHHHHHHHHHHHHHhcCCCCCccc-
Confidence 999999999987653211 11233568999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 037382 229 SRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSEL 308 (555)
Q Consensus 229 ~~~~v~~gGNF~~~~va~a~d~l~~Al~~l~~l~~~r~~~L~n~~~n~GLP~~L~~~~~~~~~~G~~~~q~~~aal~aE~ 308 (555)
++|+++|||||||+||+++||++++|++++|+++|||+.+|+||.+|+|||+||+. ++||+|||||++||++|||++||
T Consensus 333 ~~~~v~sgGNFhg~~va~a~D~l~iAla~lg~lserR~~~L~d~~~~~gLP~fL~~-~~~glnsGfm~~q~taaal~sE~ 411 (526)
T 2qve_A 333 EGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVS-GDPGLHSGFAGAQYPATALVAEN 411 (526)
T ss_dssp TTSCCBCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCGGGCS-SCBTTBCTTHHHHHHHHHHHHHH
T ss_pred CCCceecCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCChhcCC-CCCCcCcccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999997899999932 57999999999999999999999
Q ss_pred hhccCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHhh
Q 037382 309 QFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKHTVKDTVSQVARKVLT 388 (555)
Q Consensus 309 ~~La~P~s~~~~~~~~~neD~~Sm~~~aar~~~~~v~~l~~i~A~ell~a~QAldlR~~~~~~~~~~~~~~~~l~~~~~~ 388 (555)
|+|| |+|+|++|+++|||||||||++||||+.+++||+++|+|||++++|||+|||+.....++.++++++.+|+.++
T Consensus 412 k~La-PaSvds~pts~~~ED~vSmg~~aArk~~~~v~n~~~vlAiEll~a~QAidlr~~~~~~~~~~~~~~~~vR~~vp- 489 (526)
T 2qve_A 412 RTIG-PASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVP- 489 (526)
T ss_dssp TTCC-CSTTCCCCBTTTTBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHSC-
T ss_pred HHhC-CCccCCccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHhCC-
Confidence 9999 99999999999999999999999999999999999999999999999999996432289999999999999988
Q ss_pred cCCCCCCCCCcCCHHHHHHHHhhc
Q 037382 389 VGANGELHPSRFCEKDLLKAADRE 412 (555)
Q Consensus 389 ~~~~~~l~~dr~~~~~l~~~~~~~ 412 (555)
++++||++.+||+++.+..
T Consensus 490 -----~~~~DR~l~~di~~~~~~l 508 (526)
T 2qve_A 490 -----TLGVDRYMADDIELVADAL 508 (526)
T ss_dssp -----CCCSCCCCHHHHHHHHHHH
T ss_pred -----CccCCcCcHHHHHHHHHHH
Confidence 7899999999999987765
No 9
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation; HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB: 1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Probab=20.43 E-value=1.5e+02 Score=32.12 Aligned_cols=43 Identities=9% Similarity=0.162 Sum_probs=36.9
Q ss_pred cccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchh
Q 037382 492 KECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIID 538 (555)
Q Consensus 492 lg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~ 538 (555)
.+.++..+|+.||+. ||+.. +++....+|.++.+-|++|++..
T Consensus 455 ~~~~~~~~~~~vR~~--vp~~~--~DR~l~~di~~~~~~l~~~~~~~ 497 (507)
T 1gkm_A 455 TSAKLEKARQALRSE--VAHYD--RDRFFAPDIEKAVELLAKGSLTG 497 (507)
T ss_dssp CCHHHHHHHHHHHTT--SCCCC--SCCCCHHHHHHHHHHHHTTTTGG
T ss_pred CChHHHHHHHHHHHh--CCCcc--CCcCcHHHHHHHHHHHHcCCHHh
Confidence 377899999999996 77774 56888999999999999999854
No 10
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247; 2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A* 2ohy_A* 3kdz_A* 3kdy_A*
Probab=18.56 E-value=43 Score=36.53 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=39.6
Q ss_pred cccCcchhHHHhhhhcCcccccCccccCCCcchHHHHHHHhcCcchhhHHH
Q 037382 492 KECRSYPLYRLVREELGTNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLE 542 (555)
Q Consensus 492 lg~~S~~LY~FVR~eLgvp~~~G~~~~T~G~~iskIYeAIr~G~l~~~l~~ 542 (555)
.+.++..+|+.||+. ||+.. +++....+|.++.+.|++|++...+-+
T Consensus 473 ~~~~~~~~~~~vR~~--vp~~~--~DR~l~~di~~~~~~l~~~~~~~~~~~ 519 (526)
T 2qve_A 473 LSPAAKATYEAVRRL--VPTLG--VDRYMADDIELVADALSRGEFLRAIAR 519 (526)
T ss_dssp SCHHHHHHHHHHHHH--SCCCC--SCCCCHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CChhHHHHHHHHHHh--CCCcc--CCcCcHHHHHHHHHHHHcCcHHHHHHH
Confidence 477899999999997 77774 568889999999999999998766544
Done!