Query 037384
Match_columns 190
No_of_seqs 175 out of 1080
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 3.8E-16 8.3E-21 114.3 3.9 73 27-100 2-79 (89)
2 PF14368 LTP_2: Probable lipid 99.6 1.6E-16 3.4E-21 116.2 -1.3 79 24-105 18-96 (96)
3 cd04660 nsLTP_like nsLTP_like: 99.6 1.5E-15 3.2E-20 107.9 2.4 71 28-105 1-73 (73)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 5.4E-15 1.2E-19 101.2 2.8 63 35-97 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 9.2E-13 2E-17 92.5 2.2 61 33-100 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 1.1E-10 2.4E-15 80.7 3.6 75 28-105 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.7 1.6E-10 3.6E-15 83.8 -6.5 69 33-105 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 96.3 0.0014 3E-08 48.3 0.5 77 28-106 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 95.9 0.0042 9.1E-08 45.8 1.8 77 27-105 3-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 82.1 0.23 5E-06 37.1 -1.5 69 33-106 13-109 (110)
11 PF07172 GRP: Glycine rich pro 66.9 4.2 9.1E-05 30.4 1.9 8 1-8 1-8 (95)
12 KOG1924 RhoA GTPase effector D 66.2 32 0.0007 35.1 8.3 14 89-102 519-532 (1102)
13 PF05617 Prolamin_like: Prolam 23.1 59 0.0013 22.0 1.7 33 35-70 9-46 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.61 E-value=3.8e-16 Score=114.32 Aligned_cols=73 Identities=34% Similarity=0.729 Sum_probs=62.8
Q ss_pred CChhhhcCccccHHhhcCCCCCCChhhhhhhhhhhcC-----CcccccccccCCCCCCCcccChhhhhccccccccccC
Q 037384 27 VCTGALTSLAPCLNYVSGNSSNPSPSCCSQLRSVVQS-----SPQCLCSVLNGGVPSLGITINQTLALSLPRACQVQTP 100 (190)
Q Consensus 27 ~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~lk~v~~s-----~~~CLC~~l~~~~~slg~~in~trA~~LP~~CgV~~p 100 (190)
+|..++..|.||++|++|+...|++.||++++++++. +++|+|.++++....+. .||.+|+++||++|||+++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~-~i~~~~a~~LP~~C~v~~~ 79 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGIS-GLNPGRAAGLPGKCGVSIP 79 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccC-CCCHHHHHhChHhcccCCC
Confidence 6999999999999999988778999999999998753 56899999987654442 2899999999999999976
No 2
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.57 E-value=1.6e-16 Score=116.18 Aligned_cols=79 Identities=49% Similarity=0.941 Sum_probs=49.4
Q ss_pred CCCCChhhhcCccccHHhhcCCCCCCChhhhhhhhhhhcCCcccccccccCCCCCCCcccChhhhhccccccccccCCCC
Q 037384 24 GQMVCTGALTSLAPCLNYVSGNSSNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSLGITINQTLALSLPRACQVQTPPIS 103 (190)
Q Consensus 24 A~~~C~~~l~~L~pCl~yvtg~~~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~slg~~in~trA~~LP~~CgV~~pp~s 103 (190)
...+|.+.+....+|+.|+.++ ..|+..||+++|++++.+++|||+++++.. ..+++||.+|++.||++||++.++ +
T Consensus 18 ~~~~c~~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~-~~~~~in~~~a~~Lp~~Cg~~~~~-~ 94 (96)
T PF14368_consen 18 CCCSCANSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQADPPCLCQLLNSPG-APGFGINVTRALALPAACGVPVPP-S 94 (96)
T ss_dssp BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC-HCHHCCTCHHHHHHHHHCTSS-S---
T ss_pred CcchhHHHHhccccchhccCCC-CCCCHHHHHHHHHhccCCCCCHHHhcCccc-cccCCcCHHHHHHHHHHcCCCCCC-C
Confidence 4567765433333348888854 579999999999998889999999999865 234579999999999999999988 7
Q ss_pred CC
Q 037384 104 QC 105 (190)
Q Consensus 104 ~C 105 (190)
+|
T Consensus 95 ~C 96 (96)
T PF14368_consen 95 KC 96 (96)
T ss_dssp --
T ss_pred CC
Confidence 87
No 3
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.55 E-value=1.5e-15 Score=107.87 Aligned_cols=71 Identities=39% Similarity=0.779 Sum_probs=59.9
Q ss_pred ChhhhcCccccHHhhcCCC--CCCChhhhhhhhhhhcCCcccccccccCCCCCCCcccChhhhhccccccccccCCCCCC
Q 037384 28 CTGALTSLAPCLNYVSGNS--SNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSLGITINQTLALSLPRACQVQTPPISQC 105 (190)
Q Consensus 28 C~~~l~~L~pCl~yvtg~~--~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~slg~~in~trA~~LP~~CgV~~pp~s~C 105 (190)
|...+..|.+|++|+++++ ..|+..||+++|++ +++|+|.+++... +. .||.+||.+||++|||++|+ ++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~--~~-~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSLV--LQ-IIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCCc--cc-ccCHHHHHHHHHHcCCCCCC-CCC
Confidence 5666788999999999876 36899999999986 6679999887532 33 38999999999999999998 888
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.52 E-value=5.4e-15 Score=101.17 Aligned_cols=63 Identities=52% Similarity=0.962 Sum_probs=54.0
Q ss_pred ccccHHhhcCCCCCCChhhhhhhhhhhcCCcccccccccCCCCCCCcccChhhhhcccccccc
Q 037384 35 LAPCLNYVSGNSSNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSLGITINQTLALSLPRACQV 97 (190)
Q Consensus 35 L~pCl~yvtg~~~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~slg~~in~trA~~LP~~CgV 97 (190)
|.||++|++++...|+..||++++++++.++.|||+++++........+|.++++.||++|||
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 679999999887789999999999999889999999999875433222379999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.30 E-value=9.2e-13 Score=92.48 Aligned_cols=61 Identities=36% Similarity=0.704 Sum_probs=52.5
Q ss_pred cCccccHHhhcCCCCCCChhhhhhhhhhhcCCcccccccccCCCCCCCcccChhhhhccccccccccC
Q 037384 33 TSLAPCLNYVSGNSSNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSLGITINQTLALSLPRACQVQTP 100 (190)
Q Consensus 33 ~~L~pCl~yvtg~~~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~slg~~in~trA~~LP~~CgV~~p 100 (190)
.+|.+|++|++++ ..|+..||+.||+ +..|||.++++.. ++..||.++|++||++|||.+|
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~p~--l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKNPS--LKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecCcc--HHhhcCcHHHHHHHHHcCCCCC
Confidence 4799999999976 4799999999998 4489999998753 4445899999999999999885
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.07 E-value=1.1e-10 Score=80.73 Aligned_cols=75 Identities=44% Similarity=0.828 Sum_probs=59.5
Q ss_pred ChhhhcCccccHHhhcCC--CCCCChhhhhhhhhhhcCCcccccccccCCCCCCCc--ccChhhhhccccccccccCCCC
Q 037384 28 CTGALTSLAPCLNYVSGN--SSNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSLGI--TINQTLALSLPRACQVQTPPIS 103 (190)
Q Consensus 28 C~~~l~~L~pCl~yvtg~--~~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~slg~--~in~trA~~LP~~CgV~~pp~s 103 (190)
|...+..+.+|++|+++. ...|+..||++|+++. +..|+|..++.....+.. .+|..++..||+.||+..++ +
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~ 77 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-T 77 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-C
Confidence 666777888999999976 4578899999999986 788999998865432211 25899999999999998764 4
Q ss_pred CC
Q 037384 104 QC 105 (190)
Q Consensus 104 ~C 105 (190)
.|
T Consensus 78 ~C 79 (79)
T smart00499 78 DC 79 (79)
T ss_pred CC
Confidence 55
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.69 E-value=1.6e-10 Score=83.75 Aligned_cols=69 Identities=38% Similarity=0.841 Sum_probs=55.7
Q ss_pred cCccccHHhhcCCCCCCChhhhhhhhhhhcCCcccccccccCCCCCC---------CcccChhhhhccccccccccCCCC
Q 037384 33 TSLAPCLNYVSGNSSNPSPSCCSQLRSVVQSSPQCLCSVLNGGVPSL---------GITINQTLALSLPRACQVQTPPIS 103 (190)
Q Consensus 33 ~~L~pCl~yvtg~~~~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~sl---------g~~in~trA~~LP~~CgV~~pp~s 103 (190)
..|.+|+.|++++...|+..||++|+++ ++.|.|..|+...... ...++..+|..||+.|||..+. .
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~-~ 88 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY-T 88 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-S
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-C
Confidence 4589999999987667999999999999 8999999987643221 1367899999999999999875 3
Q ss_pred CC
Q 037384 104 QC 105 (190)
Q Consensus 104 ~C 105 (190)
+|
T Consensus 89 ~C 90 (90)
T PF00234_consen 89 DC 90 (90)
T ss_dssp -G
T ss_pred CC
Confidence 45
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=96.25 E-value=0.0014 Score=48.31 Aligned_cols=77 Identities=30% Similarity=0.626 Sum_probs=54.0
Q ss_pred ChhhhcCccccHHhhc----CCCCCCChhhhhhhhhhhcCC-cccccccccCCCCCCC-cccChhhhhc-cccccccccC
Q 037384 28 CTGALTSLAPCLNYVS----GNSSNPSPSCCSQLRSVVQSS-PQCLCSVLNGGVPSLG-ITINQTLALS-LPRACQVQTP 100 (190)
Q Consensus 28 C~~~l~~L~pCl~yvt----g~~~~Ps~~CC~~lk~v~~s~-~~CLC~~l~~~~~slg-~~in~trA~~-LP~~CgV~~p 100 (190)
|-....+|.-|.+.+- .-+..+...||.-++.+.+.+ ..|||..++... +| +++|....+. |-+.||-+.|
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v--lg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV--LGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc--ccccccccccHHHHHHHHhCCcCc
Confidence 4444457888888871 112247889999999997765 579999998654 45 4554444444 5688999988
Q ss_pred CCCCCC
Q 037384 101 PISQCK 106 (190)
Q Consensus 101 p~s~C~ 106 (190)
+.++|.
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 888884
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=95.94 E-value=0.0042 Score=45.78 Aligned_cols=77 Identities=29% Similarity=0.638 Sum_probs=54.2
Q ss_pred CChhhhcCccccHHhhcCC----CCCCChhhhhhhhhhhcCC-cccccccccCCCCCCCcccChhhhhcc-ccccccccC
Q 037384 27 VCTGALTSLAPCLNYVSGN----SSNPSPSCCSQLRSVVQSS-PQCLCSVLNGGVPSLGITINQTLALSL-PRACQVQTP 100 (190)
Q Consensus 27 ~C~~~l~~L~pCl~yvtg~----~~~Ps~~CC~~lk~v~~s~-~~CLC~~l~~~~~slg~~in~trA~~L-P~~CgV~~p 100 (190)
.|-....+|.-|.+-+-.- +..|..+||.-++.+.+-+ ..|||..++... +|+++|..-.+.+ -..||-..|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~--lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANI--LGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccc--cCcccccChhHHHHHHHHcCcCC
Confidence 3544445677777766311 2357789999999997765 579999998653 5666665555554 467999998
Q ss_pred CCCCC
Q 037384 101 PISQC 105 (190)
Q Consensus 101 p~s~C 105 (190)
+.++|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 88777
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=82.05 E-value=0.23 Score=37.05 Aligned_cols=69 Identities=25% Similarity=0.514 Sum_probs=45.0
Q ss_pred cCccccHHhhcCC---CC-----------CCChhhhhhhhhhhcCCcccccccccCCCCC----C----------CcccC
Q 037384 33 TSLAPCLNYVSGN---SS-----------NPSPSCCSQLRSVVQSSPQCLCSVLNGGVPS----L----------GITIN 84 (190)
Q Consensus 33 ~~L~pCl~yvtg~---~~-----------~Ps~~CC~~lk~v~~s~~~CLC~~l~~~~~s----l----------g~~in 84 (190)
..|.+|..|+.-. .. ..-..||..|+.+ +..|-|..|...... . ....-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 3688999998521 10 1237899999998 788999987532110 0 01223
Q ss_pred hhhhhccccccccccCCCCCCC
Q 037384 85 QTLALSLPRACQVQTPPISQCK 106 (190)
Q Consensus 85 ~trA~~LP~~CgV~~pp~s~C~ 106 (190)
...|..||..|||.. ...|.
T Consensus 90 ~~~a~~Lp~~C~~~~--~~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYP--PPYCP 109 (110)
T ss_pred HHHHHhhchhcCCCC--CCCCC
Confidence 457889999999986 23564
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=66.85 E-value=4.2 Score=30.37 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=5.1
Q ss_pred CccchhHH
Q 037384 1 MASRGLEM 8 (190)
Q Consensus 1 Ma~~~~~~ 8 (190)
||++.+++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 89666443
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.19 E-value=32 Score=35.12 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.4
Q ss_pred hccccccccccCCC
Q 037384 89 LSLPRACQVQTPPI 102 (190)
Q Consensus 89 ~~LP~~CgV~~pp~ 102 (190)
..+|..||+..||.
T Consensus 519 ~~~~~~~~iP~PP~ 532 (1102)
T KOG1924|consen 519 QLLPIDGGIPPPPP 532 (1102)
T ss_pred cCCCCCCCCCCCCC
Confidence 35788999988753
No 13
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=23.08 E-value=59 Score=21.96 Aligned_cols=33 Identities=24% Similarity=0.602 Sum_probs=21.7
Q ss_pred ccccHHhh----c-CCCCCCChhhhhhhhhhhcCCcccccc
Q 037384 35 LAPCLNYV----S-GNSSNPSPSCCSQLRSVVQSSPQCLCS 70 (190)
Q Consensus 35 L~pCl~yv----t-g~~~~Ps~~CC~~lk~v~~s~~~CLC~ 70 (190)
...|.+-| . |+....+..||..+.++ ..+|.=.
T Consensus 9 ~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~---g~~C~~~ 46 (70)
T PF05617_consen 9 SPGCGDEIFNSFFNGNKKNIGPECCKAINKM---GKDCHPA 46 (70)
T ss_pred ccchHHHHHHHHHcCCCCCCChHHHHHHHHH---hHhHHHH
Confidence 44455544 3 44347899999999887 5666655
Done!