Query 037386
Match_columns 189
No_of_seqs 181 out of 677
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 99.8 7.9E-19 1.7E-23 138.9 10.9 93 76-187 21-124 (125)
2 PF03330 DPBB_1: Rare lipoprot 99.7 6.2E-17 1.3E-21 116.3 6.2 65 108-186 2-78 (78)
3 smart00837 DPBB_1 Rare lipopro 99.4 6.9E-13 1.5E-17 98.9 6.1 77 107-186 1-87 (87)
4 PLN00193 expansin-A; Provision 99.3 2E-11 4.4E-16 106.9 10.2 105 81-188 35-155 (256)
5 PLN00050 expansin A; Provision 99.2 4.1E-11 8.9E-16 104.5 9.6 92 94-188 44-147 (247)
6 PF00967 Barwin: Barwin family 98.7 1.4E-08 3E-13 80.0 5.2 56 117-188 56-116 (119)
7 PLN03023 Expansin-like B1; Pro 98.7 7.4E-08 1.6E-12 84.2 9.9 79 94-187 44-137 (247)
8 PRK10672 rare lipoprotein A; P 98.7 6.1E-07 1.3E-11 82.2 15.1 112 48-185 54-167 (361)
9 TIGR00413 rlpA rare lipoprotei 98.3 4.1E-06 8.8E-11 71.8 9.7 74 91-185 12-87 (208)
10 COG0797 RlpA Lipoproteins [Cel 98.3 5.6E-05 1.2E-09 65.9 15.2 103 58-186 68-174 (233)
11 PF07249 Cerato-platanin: Cera 97.9 5.5E-05 1.2E-09 59.9 7.7 64 106-188 44-111 (119)
12 COG4305 Endoglucanase C-termin 97.7 0.00015 3.3E-09 61.6 7.0 75 99-188 51-129 (232)
13 TIGR02645 ARCH_P_rylase putati 68.9 17 0.00038 35.2 7.0 45 118-175 26-70 (493)
14 TIGR03327 AMP_phos AMP phospho 52.7 49 0.0011 32.2 6.9 44 119-175 28-71 (500)
15 PRK04350 thymidine phosphoryla 41.4 96 0.0021 30.1 7.0 44 121-176 23-66 (490)
16 COG4332 Uncharacterized protei 40.4 56 0.0012 28.2 4.7 52 120-174 30-81 (203)
17 KOG4106 Uncharacterized conser 36.2 35 0.00075 27.3 2.6 24 117-140 24-47 (125)
18 PF02237 BPL_C: Biotin protein 34.4 75 0.0016 20.6 3.6 21 121-141 2-22 (48)
19 TIGR03170 flgA_cterm flagella 22.1 1.2E+02 0.0027 22.7 3.4 24 118-141 92-117 (122)
20 COG2991 Uncharacterized protei 22.0 71 0.0015 23.7 2.0 35 1-36 1-38 (77)
21 PHA03295 envelope glycoprotein 21.8 1.1E+02 0.0024 31.1 3.9 33 47-86 34-66 (714)
22 PF08669 GCV_T_C: Glycine clea 21.4 1.4E+02 0.003 21.3 3.4 20 121-140 75-94 (95)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.79 E-value=7.9e-19 Score=138.89 Aligned_cols=93 Identities=24% Similarity=0.390 Sum_probs=79.1
Q ss_pred ceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe-----------CCcEEEEEEeecCCC
Q 037386 76 KATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG-----------NGKSVKAKVVDECDS 144 (189)
Q Consensus 76 ~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~-----------nGkSV~a~VVD~Cds 144 (189)
....+.|+|++ +.++||+ ..+.+++++|||++..|++++.||++++|+. |||+|+++|+|+|+
T Consensus 21 ~~~G~AT~Y~~----~~~gAC~-~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP- 94 (125)
T PLN03024 21 ATPGIATFYTS----YTPSACY-RGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCP- 94 (125)
T ss_pred ccceEEEEeCC----CCCcccc-CCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCC-
Confidence 34456789974 3456997 4577889999999999999999999999983 68999999999994
Q ss_pred CCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEEEE
Q 037386 145 TVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIHWS 187 (189)
Q Consensus 145 ~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~ItWs 187 (189)
++|. ++||||+++|++|+ +.+.|+++|+|.
T Consensus 95 -----------~~C~-~~~DLS~~AF~~iA-~~~aG~v~V~y~ 124 (125)
T PLN03024 95 -----------SGCA-STLDLSREAFAQIA-NPVAGIINIDYI 124 (125)
T ss_pred -----------CCCC-CceEcCHHHHHHhc-CccCCEEEEEEe
Confidence 2575 59999999999999 789999999996
No 2
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.68 E-value=6.2e-17 Score=116.29 Aligned_cols=65 Identities=38% Similarity=0.704 Sum_probs=57.5
Q ss_pred EEeeccccCCCCCCccEEEEEe-----C-----C--cEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 037386 108 VALSTGWYNKGSRCLNYINIYG-----N-----G--KSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV 175 (189)
Q Consensus 108 VALstgw~~~~~~CGk~I~It~-----n-----G--kSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~ 175 (189)
||++..||+++..||++++++. . . |+|+|+|+|+| |+|.+++||||+++|++|+
T Consensus 2 ~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~C-------------p~~~~~~lDLS~~aF~~la- 67 (78)
T PF03330_consen 2 AAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRC-------------PGCPPNHLDLSPAAFKALA- 67 (78)
T ss_dssp EEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE--------------TTSSSSEEEEEHHHHHHTB-
T ss_pred eEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccC-------------CCCcCCEEEeCHHHHHHhC-
Confidence 7899999999999999999986 1 2 99999999999 7899999999999999999
Q ss_pred CCCCcEEEEEE
Q 037386 176 PTSRGELDIHW 186 (189)
Q Consensus 176 ~~~~G~i~ItW 186 (189)
+.+.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 78999999999
No 3
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.39 E-value=6.9e-13 Score=98.90 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=60.7
Q ss_pred eEEeeccccCCCCCCccEEEEEe--------CCcEEEEEEeecCCCCCCCCCCCCCCCCCC--CCeeecCHHHHHHhCCC
Q 037386 107 VVALSTGWYNKGSRCLNYINIYG--------NGKSVKAKVVDECDSTVGCDSVHDYQPPCP--NNIVDGSKAVWKALGVP 176 (189)
Q Consensus 107 VVALstgw~~~~~~CGk~I~It~--------nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~--~n~IDlS~avf~aLg~~ 176 (189)
.+|+++.+|+++..||.+++|+- +|++|+++|+|+|+...+..++ -..-|. ..|+|||..+|.+|+ .
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~--~~~~C~~~~~hfDLS~~AF~~iA-~ 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSND--NGGWCNPPRKHFDLSQPAFEKIA-Q 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCcccccccc--CCCccCCCCcCeEcCHHHHHHHh-h
Confidence 37999999999999999999982 4579999999999753221100 002263 479999999999999 7
Q ss_pred CCCcEEEEEE
Q 037386 177 TSRGELDIHW 186 (189)
Q Consensus 177 ~~~G~i~ItW 186 (189)
...|+|+|+|
T Consensus 78 ~~~Gvi~v~y 87 (87)
T smart00837 78 YKAGIVPVKY 87 (87)
T ss_pred hcCCEEeeEC
Confidence 8999999987
No 4
>PLN00193 expansin-A; Provisional
Probab=99.28 E-value=2e-11 Score=106.86 Aligned_cols=105 Identities=18% Similarity=0.304 Sum_probs=74.2
Q ss_pred Eeeecc-CCCCCCCCCCCCCc---CCCCCceEEeeccccCCCCCCccEEEEEe----------CCcEEEEEEeecCCCCC
Q 037386 81 INSFEK-NGEGGGPSECDNKY---HSDDDPVVALSTGWYNKGSRCLNYINIYG----------NGKSVKAKVVDECDSTV 146 (189)
Q Consensus 81 ~t~f~~-g~~gGg~gaCg~~~---~sd~d~VVALstgw~~~~~~CGk~I~It~----------nGkSV~a~VVD~Cds~~ 146 (189)
.|+|.. .+.|..-||||..- ....-+++||++..|+++..||.+++|+- +|++|+++|+|.||...
T Consensus 35 AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~ 114 (256)
T PLN00193 35 ATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNY 114 (256)
T ss_pred EEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecCCCCcc
Confidence 467752 11121236999531 11245899999999999999999999984 47799999999996421
Q ss_pred CCCCCCCCCCCCC--CCeeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386 147 GCDSVHDYQPPCP--NNIVDGSKAVWKALGVPTSRGELDIHWSD 188 (189)
Q Consensus 147 gCd~~~~~~p~C~--~n~IDlS~avf~aLg~~~~~G~i~ItWs~ 188 (189)
+ .+.+...-|. ..|+|||..+|.+|+ ....|+++|+|+-
T Consensus 115 ~--~~~~~ggwC~~~~~HFDLS~~AF~~iA-~~~~Giv~V~yrR 155 (256)
T PLN00193 115 A--LPNNNGGWCNPPLQHFDMAQPAWEKIG-IYRGGIVPVLFQR 155 (256)
T ss_pred c--ccccCCCcCCCCCcccccCHHHHHHHh-hhcCCeEeEEEEE
Confidence 1 0000011263 379999999999999 6789999999963
No 5
>PLN00050 expansin A; Provisional
Probab=99.24 E-value=4.1e-11 Score=104.47 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=69.6
Q ss_pred CCCCCCc-C--CCCCceEEeeccccCCCCCCccEEEEEe-CC------cEEEEEEeecCCCCCCCCCCCCCCCCCC--CC
Q 037386 94 SECDNKY-H--SDDDPVVALSTGWYNKGSRCLNYINIYG-NG------KSVKAKVVDECDSTVGCDSVHDYQPPCP--NN 161 (189)
Q Consensus 94 gaCg~~~-~--sd~d~VVALstgw~~~~~~CGk~I~It~-nG------kSV~a~VVD~Cds~~gCd~~~~~~p~C~--~n 161 (189)
||||..- . ....+++||++..|+++..||.+++|+- ++ ++|+++|+|+||...+.. .+...-|. ..
T Consensus 44 GACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~--~~~~gwC~~~~~ 121 (247)
T PLN00050 44 GACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALP--NNDGGWCNPPQQ 121 (247)
T ss_pred cccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcC--ccCCCcCCCCCc
Confidence 6999432 1 1256899999999999999999999995 32 489999999997432210 00011263 48
Q ss_pred eeecCHHHHHHhCCCCCCcEEEEEEEe
Q 037386 162 IVDGSKAVWKALGVPTSRGELDIHWSD 188 (189)
Q Consensus 162 ~IDlS~avf~aLg~~~~~G~i~ItWs~ 188 (189)
|+|||+.+|.+|+ ....|+|+|+|+-
T Consensus 122 hFDLS~~AF~~iA-~~~aGii~V~yRR 147 (247)
T PLN00050 122 HFDLSQPVFQKIA-QYKAGIVPVQYRR 147 (247)
T ss_pred ccccCHHHHHHHh-hhcCCeeeeEEEE
Confidence 9999999999999 7889999999963
No 6
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.75 E-value=1.4e-08 Score=79.99 Aligned_cols=56 Identities=20% Similarity=0.432 Sum_probs=41.3
Q ss_pred CCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCC---CCcEEEEEEEe
Q 037386 117 KGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPT---SRGELDIHWSD 188 (189)
Q Consensus 117 ~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~---~~G~i~ItWs~ 188 (189)
+...|||+++||. +|.+++++|||+| .++.|||.+.||.+|-.+- ..|.+.|+|+|
T Consensus 56 gq~~CGkClrVTNt~tga~~~~RIVDqC----------------snGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~f 116 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTATGAQVTVRIVDQC----------------SNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEF 116 (119)
T ss_dssp SGGGTT-EEEEE-TTT--EEEEEEEEE-----------------SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEE
T ss_pred CcccccceEEEEecCCCcEEEEEEEEcC----------------CCCCcccChhHHhhhccCCcccccceEEEEEEE
Confidence 3568999999996 7999999999999 4567999999999996322 37899999987
No 7
>PLN03023 Expansin-like B1; Provisional
Probab=98.73 E-value=7.4e-08 Score=84.21 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=62.5
Q ss_pred CCCCCCc---CCCCCceEEeeccccCCCCCCccEEEEEe------CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeee
Q 037386 94 SECDNKY---HSDDDPVVALSTGWYNKGSRCLNYINIYG------NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVD 164 (189)
Q Consensus 94 gaCg~~~---~sd~d~VVALstgw~~~~~~CGk~I~It~------nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~ID 164 (189)
||||..- ....-.++|++ ..|+++.-||.+.+|+- .+++|+++|+|.| ++ ...|+|
T Consensus 44 GACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd~~-------------~~-~~~hFd 108 (247)
T PLN03023 44 GACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYG-------------EG-DKTDFI 108 (247)
T ss_pred ccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEeCC-------------CC-CCCccc
Confidence 4898421 22346789998 99999999999999983 4668999999999 33 357999
Q ss_pred cCHHHHHHhCCC------CCCcEEEEEEE
Q 037386 165 GSKAVWKALGVP------TSRGELDIHWS 187 (189)
Q Consensus 165 lS~avf~aLg~~------~~~G~i~ItWs 187 (189)
||..+|.+|+.+ ...|+|+|+++
T Consensus 109 LS~~AF~~iA~pg~~~~l~~aGiv~v~Yr 137 (247)
T PLN03023 109 LSPRAYARLARPNMAAELFAYGVVDVEYR 137 (247)
T ss_pred cCHHHHHHHhCccccchhccCcEEEeEEE
Confidence 999999999842 34699999874
No 8
>PRK10672 rare lipoprotein A; Provisional
Probab=98.69 E-value=6.1e-07 Score=82.21 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=80.1
Q ss_pred CCCCCCccccCCeEEeeeecCCCcccccceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEE
Q 037386 48 NKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINI 127 (189)
Q Consensus 48 ~~~~~~~cc~~g~~Y~~~~csp~v~~~t~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~I 127 (189)
+.....+-=+.|+.|+..+= ...-.......||... -.|..++-|+.|+. ..+.+|-.+- --+..|+|
T Consensus 54 ~~~~n~~Y~v~G~~Y~~~~~----~~~~~~~G~ASwYg~~-f~G~~TA~Ge~~~~-~~~tAAH~tL------Plps~vrV 121 (361)
T PRK10672 54 NPTANQDYQRNGKSYKIVQD----PSNFSQAGLAAIYDAE-AGSNLTASGERFDP-NALTAAHPTL------PIPSYVRV 121 (361)
T ss_pred CccCCCCeEECCEEEEeCcc----CCCcceEEEEEEeCCc-cCCCcCcCceeecC-CcCeeeccCC------CCCCEEEE
Confidence 34444456678999998541 1223345666777653 34678999977754 5666665432 57789999
Q ss_pred Ee--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEEEE
Q 037386 128 YG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELDIH 185 (189)
Q Consensus 128 t~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~It 185 (189)
|. |||+|+++|.|++++.. ..+||||.+++++||. ...+++.|+
T Consensus 122 tNl~ngrsvvVrVnDRGP~~~-------------gRiiDLS~aAA~~Lg~-~~~~~V~ve 167 (361)
T PRK10672 122 TNLANGRMIVVRINDRGPYGP-------------GRVIDLSRAAADRLNT-SNNTKVRID 167 (361)
T ss_pred EECCCCcEEEEEEeCCCCCCC-------------CCeeEcCHHHHHHhCC-CCCceEEEE
Confidence 95 99999999999997543 4799999999999995 456777665
No 9
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.32 E-value=4.1e-06 Score=71.83 Aligned_cols=74 Identities=23% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe--CCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHH
Q 037386 91 GGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG--NGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKA 168 (189)
Q Consensus 91 Gg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~--nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~a 168 (189)
|..+|.|..|+. ..+.+|-.+- ..|..|+|+. |||+|+++|.|++|+.. ..+||||++
T Consensus 12 G~~TAnGe~y~~-~~~tAAHktL------PlgT~V~VtNl~ngrsviVrVnDRGPf~~-------------gRiIDLS~a 71 (208)
T TIGR00413 12 GRKTANGEVYNM-KALTAAHKTL------PFNTYVKVTNLHNNRSVIVRINDRGPFSD-------------DRIIDLSHA 71 (208)
T ss_pred CCcCCCCeecCC-CccccccccC------CCCCEEEEEECCCCCEEEEEEeCCCCCCC-------------CCEEECCHH
Confidence 678899977755 5566665432 6888999995 99999999999997643 379999999
Q ss_pred HHHHhCCCCCCcEEEEE
Q 037386 169 VWKALGVPTSRGELDIH 185 (189)
Q Consensus 169 vf~aLg~~~~~G~i~It 185 (189)
++++|| -.+.|+.+|.
T Consensus 72 AA~~Lg-~~~~G~a~V~ 87 (208)
T TIGR00413 72 AAREIG-LISRGVGQVR 87 (208)
T ss_pred HHHHcC-CCcCceEEEE
Confidence 999999 5667776654
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=5.6e-05 Score=65.85 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCeEEeeeecCCCcccccceEEEEeeeccCCCCCCCCCCCCCcCCCCCceEEeeccccCCCCCCccEEEEEe--CCcEEE
Q 037386 58 EGKLYTIYRCSPPVTGHTKATLTINSFEKNGEGGGPSECDNKYHSDDDPVVALSTGWYNKGSRCLNYINIYG--NGKSVK 135 (189)
Q Consensus 58 ~g~~Y~~~~csp~v~~~t~a~lt~t~f~~g~~gGg~gaCg~~~~sd~d~VVALstgw~~~~~~CGk~I~It~--nGkSV~ 135 (189)
.|+.|.... ......-..+..||.+ +=.|-.+|=|+.|+. ..+.+|=.+= .-+-.++||. |||+|+
T Consensus 68 ~g~~y~~~~----~~~~~~~~G~ASwYg~-~fhgr~TA~Ge~~n~-~~~tAAH~TL------P~~t~v~VtNl~Ngrsvv 135 (233)
T COG0797 68 KGKSYYPKA----EPASFEQVGYASWYGE-KFHGRKTANGERYDM-NALTAAHKTL------PLPTYVRVTNLDNGRSVV 135 (233)
T ss_pred eeeEEEeee----ccccccccceeeeecc-ccCCccccCcccccc-cccccccccC------CCCCEEEEEEccCCcEEE
Confidence 456665543 2223333445556652 223445555544432 3333332221 4677899996 999999
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCCCCCcEEE--EEE
Q 037386 136 AKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVPTSRGELD--IHW 186 (189)
Q Consensus 136 a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~~~~G~i~--ItW 186 (189)
++|.|++|+.. ..+||||.+++++|+ -.+.|+.+ |+|
T Consensus 136 VRINDRGPf~~-------------gRiIDlS~aAA~~l~-~~~~G~a~V~i~~ 174 (233)
T COG0797 136 VRINDRGPFVS-------------GRIIDLSKAAADKLG-MIRSGVAKVRIEV 174 (233)
T ss_pred EEEeCCCCCCC-------------CcEeEcCHHHHHHhC-CccCceEEEEEEE
Confidence 99999997654 489999999999999 56677665 555
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=97.90 E-value=5.5e-05 Score=59.89 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=46.1
Q ss_pred ceEEee--ccccCCCCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC--CCCCcE
Q 037386 106 PVVALS--TGWYNKGSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV--PTSRGE 181 (189)
Q Consensus 106 ~VVALs--tgw~~~~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~--~~~~G~ 181 (189)
+|.+.. ++| | .+.||++.++++|||+|.+..+|.=. ..+++|+++|+.|.. ....|+
T Consensus 44 ~IGg~~~V~gW-n-S~~CGtC~~lty~g~si~vlaID~a~-----------------~gfnis~~A~n~LT~g~a~~lG~ 104 (119)
T PF07249_consen 44 YIGGAPAVAGW-N-SPNCGTCWKLTYNGRSIYVLAIDHAG-----------------GGFNISLDAMNDLTNGQAVELGR 104 (119)
T ss_dssp SEEEETT--ST-T--TTTT-EEEEEETTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHHTS-CCCC-E
T ss_pred eeccccccccC-C-CCCCCCeEEEEECCeEEEEEEEecCC-----------------CcccchHHHHHHhcCCcccceeE
Confidence 355554 356 4 47999999999999999999999752 349999999999953 456999
Q ss_pred EEEEEEe
Q 037386 182 LDIHWSD 188 (189)
Q Consensus 182 i~ItWs~ 188 (189)
|++++..
T Consensus 105 V~a~~~q 111 (119)
T PF07249_consen 105 VDATYTQ 111 (119)
T ss_dssp EE-EEEE
T ss_pred EEEEEEE
Confidence 9999864
No 12
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00015 Score=61.58 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=60.8
Q ss_pred CcCCCCCceEEeeccccCC----CCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhC
Q 037386 99 KYHSDDDPVVALSTGWYNK----GSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALG 174 (189)
Q Consensus 99 ~~~sd~d~VVALstgw~~~----~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg 174 (189)
++.+ +.-|-||+....|- .+.-|..++|+....+.++.|.|.- |.=..+.||||+.+|.++|
T Consensus 51 PI~s-d~eITAlNPaqlNlGGipAAmAGaYLrVqGPKG~TTVYVTDlY-------------PegasGaLDLSpNAFakIG 116 (232)
T COG4305 51 PIPS-DMEITALNPAQLNLGGIPAAMAGAYLRVQGPKGKTTVYVTDLY-------------PEGASGALDLSPNAFAKIG 116 (232)
T ss_pred CcCC-cceeeecCHHHcccCCchhhhccceEEEECCCCceEEEEeccc-------------ccccccccccChHHHhhhc
Confidence 3444 45588999998883 4578999999995444678999988 4446689999999999999
Q ss_pred CCCCCcEEEEEEEe
Q 037386 175 VPTSRGELDIHWSD 188 (189)
Q Consensus 175 ~~~~~G~i~ItWs~ 188 (189)
+..+|+|+|.|+.
T Consensus 117 -nm~qGrIpvqWrv 129 (232)
T COG4305 117 -NMKQGRIPVQWRV 129 (232)
T ss_pred -chhcCccceeEEE
Confidence 8999999999974
No 13
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=68.90 E-value=17 Score=35.18 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=34.7
Q ss_pred CCCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 037386 118 GSRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV 175 (189)
Q Consensus 118 ~~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~ 175 (189)
+-+=+.+|+|+.++|+++|.|++.=. . =.++.+.||..+|+.|+.
T Consensus 26 g~~~~~rv~v~~~~~~~~a~~~~~~~-~------------~~~~~~gl~~~~~~~l~~ 70 (493)
T TIGR02645 26 GFTPQDRVEVRIGGKSLIAILVGSDT-L------------VEMGEIGLSVSAVETFMA 70 (493)
T ss_pred CCCcCCeEEEEeCCEEEEEEEecccc-c------------ccCCeeeccHHHHHHcCC
Confidence 34557899999999999998886311 1 134679999999999984
No 14
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=52.70 E-value=49 Score=32.20 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCC
Q 037386 119 SRCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGV 175 (189)
Q Consensus 119 ~~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~ 175 (189)
-.=+.+|+|+.|+|+++|+|.=. ++.- .++.+.||..+|+.|+.
T Consensus 28 ~~~~~rv~v~~~~~~~~a~~~~~-~~~~------------~~g~~gls~~~~~~l~~ 71 (500)
T TIGR03327 28 VHPGDRVRIESGGKSVVGIVDST-DTLV------------EKGEIGLSHEVLEELGI 71 (500)
T ss_pred CCCCCeEEEEeCCEEEEEEEEcc-cccc------------cCCeeeccHHHHHHcCC
Confidence 34567899999999999887532 2111 34679999999999984
No 15
>PRK04350 thymidine phosphorylase; Provisional
Probab=41.45 E-value=96 Score=30.14 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.2
Q ss_pred CccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhCCC
Q 037386 121 CLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALGVP 176 (189)
Q Consensus 121 CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg~~ 176 (189)
=+.+|+|+.++++++|++.=.=+.. =.++.+.||..+|+.|+..
T Consensus 23 ~~~rv~v~~~~~~~~a~~~~~~~~~------------~~~~~~gl~~~~~~~l~~~ 66 (490)
T PRK04350 23 AGDRVEVRAGGRSIIATLNITDDDL------------VGPGEIGLSESAFRRLGVS 66 (490)
T ss_pred cCCeEEEEcCCeEEEEEEEeccccc------------cCCCcccccHHHHHHhCCC
Confidence 3679999999999998874321101 1346799999999999853
No 16
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.39 E-value=56 Score=28.22 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=40.1
Q ss_pred CCccEEEEEeCCcEEEEEEeecCCCCCCCCCCCCCCCCCCCCeeecCHHHHHHhC
Q 037386 120 RCLNYINIYGNGKSVKAKVVDECDSTVGCDSVHDYQPPCPNNIVDGSKAVWKALG 174 (189)
Q Consensus 120 ~CGk~I~It~nGkSV~a~VVD~Cds~~gCd~~~~~~p~C~~n~IDlS~avf~aLg 174 (189)
.|..+++|.+|||...|...=+| .-||..-++.-==.-|-=|++|.+.++|-
T Consensus 30 ~cSg~fRvNAq~K~LDvWlIYkC---~~Cd~tWN~~IfeR~~~~~Iep~lleal~ 81 (203)
T COG4332 30 TCSGKFRVNAQGKVLDVWLIYKC---THCDYTWNISIFERLNVSDIEPDLLEALM 81 (203)
T ss_pred eecCcEEEcCCCcEEEEEEEEEe---eccCCccchhhhhccCcccCCHHHHHHHH
Confidence 57889999999999999999999 46877655432112244589999999996
No 17
>KOG4106 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.23 E-value=35 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.0
Q ss_pred CCCCCccEEEEEeCCcEEEEEEee
Q 037386 117 KGSRCLNYINIYGNGKSVKAKVVD 140 (189)
Q Consensus 117 ~~~~CGk~I~It~nGkSV~a~VVD 140 (189)
++++|...+-+++|||+|+|.==|
T Consensus 24 ~sp~lve~vavt~nGRTIvawHP~ 47 (125)
T KOG4106|consen 24 DSPRLVEKVAVTANGRTIVAWHPP 47 (125)
T ss_pred CCcceeeeEEEecCCcEEEEecCC
Confidence 356899999999999999987544
No 18
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=34.38 E-value=75 Score=20.58 Aligned_cols=21 Identities=0% Similarity=-0.113 Sum_probs=17.9
Q ss_pred CccEEEEEeCCcEEEEEEeec
Q 037386 121 CLNYINIYGNGKSVKAKVVDE 141 (189)
Q Consensus 121 CGk~I~It~nGkSV~a~VVD~ 141 (189)
-||.|+|..+++.+++++.|-
T Consensus 2 lG~~V~v~~~~~~~~G~~~gI 22 (48)
T PF02237_consen 2 LGQEVRVETGDGEIEGIAEGI 22 (48)
T ss_dssp TTSEEEEEETSCEEEEEEEEE
T ss_pred CCCEEEEEECCeEEEEEEEEE
Confidence 489999999999999988764
No 19
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=22.05 E-value=1.2e+02 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.3
Q ss_pred CCCCccEEEEEe--CCcEEEEEEeec
Q 037386 118 GSRCLNYINIYG--NGKSVKAKVVDE 141 (189)
Q Consensus 118 ~~~CGk~I~It~--nGkSV~a~VVD~ 141 (189)
...=|..|+|.. .||.+.|+|++.
T Consensus 92 ~g~~G~~I~V~N~~s~k~i~~~V~~~ 117 (122)
T TIGR03170 92 DGAVGDQIRVRNLSSGKIISGIVTGP 117 (122)
T ss_pred ccCCCCEEEEEECCCCCEEEEEEeCC
Confidence 346789999995 899999999974
No 20
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.97 E-value=71 Score=23.71 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=19.4
Q ss_pred CcccccchhHHHHHHHHHHhhhccc---ccCCcccCCCe
Q 037386 1 MKKQVCASNIILVIVSIVFLVTYGS---VEAGTCKPSGK 36 (189)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~c~~sg~ 36 (189)
|+++.... .+|+++++..++-+.. +.+++|-.=+.
T Consensus 1 M~t~lltF-g~Fllvi~gMsiG~I~krk~I~GSCGGi~a 38 (77)
T COG2991 1 MTTFLLTF-GIFLLVIAGMSIGYIFKRKSIKGSCGGIAA 38 (77)
T ss_pred CccHHHHH-HHHHHHHHHHhHhhheeccccccccccHHh
Confidence 66666665 5566666666644443 35666644333
No 21
>PHA03295 envelope glycoprotein H; Provisional
Probab=21.77 E-value=1.1e+02 Score=31.08 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCCCCCccccCCeEEeeeecCCCcccccceEEEEeeecc
Q 037386 47 CNKENNSDCCKEGKLYTIYRCSPPVTGHTKATLTINSFEK 86 (189)
Q Consensus 47 c~~~~~~~cc~~g~~Y~~~~csp~v~~~t~a~lt~t~f~~ 86 (189)
-..+|.+.||..+..-. -+--+++..|+|+|+.
T Consensus 34 ~~~~n~~~~~~~~~~~n-------~t~~~~~~itfnF~~~ 66 (714)
T PHA03295 34 FLRSNSTRCCVNNETRN-------QTVVREGLITFNFYED 66 (714)
T ss_pred EecCCCceEeecCCccc-------cccccCCeEEEEEEec
Confidence 55567778997765322 2345778999999964
No 22
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. ; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 3GIR_A 1WOO_A 1WOS_A 1WOR_A ....
Probab=21.42 E-value=1.4e+02 Score=21.33 Aligned_cols=20 Identities=30% Similarity=0.208 Sum_probs=17.1
Q ss_pred CccEEEEEeCCcEEEEEEee
Q 037386 121 CLNYINIYGNGKSVKAKVVD 140 (189)
Q Consensus 121 CGk~I~It~nGkSV~a~VVD 140 (189)
=|..++|...|+.+.|+|+|
T Consensus 75 ~g~~l~v~~~g~~~~a~v~~ 94 (95)
T PF08669_consen 75 PGTELEVEIRGKRVPATVVK 94 (95)
T ss_dssp TTSEEEEEETTEEEEEEEE-
T ss_pred CCCEEEEEECCEEEEEEEeC
Confidence 37889999999999999997
Done!