BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037387
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1
Length = 802
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 187 AICCFIYSFLYCTYP-RERERARMDALIESEMQKLEPDNTPSLENYYQQSKELSEKEVID 245
A+CC S+ + T + R + LIE+ MQ + DN L+N+ Q K+LS ++ D
Sbjct: 466 ALCCRPQSYTFQTKSLSQLLRLKTSFLIET-MQIKQQDNATMLKNFLQHHKKLSNLDIGD 524
Query: 246 IDIEYEGEESTDLDDNDKKSLLPHQTT 272
+ + GE + + N +L+ TT
Sbjct: 525 LKAQQNGENTDVVPPNIASNLIAVVTT 551
>sp|P46458|CCMH_HAEIN Putative cytochrome c-type biogenesis protein CcmH OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=ccmH PE=5 SV=1
Length = 459
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 152 KPVPKEASNSAEVETDRENAASLAKAL-------YTAIGI----PMAICCFIYSFLYCTY 200
KP + A S E+ TD +N A LA+ L +T I I +A+ CF Y L C +
Sbjct: 124 KPKTQSAVKSQEILTDEDN-ARLAELLNKDKXMNFTLIFILTTLVVALICF-YPLL-CQF 180
Query: 201 PRERERARMD---ALIESEMQKLEPDNTPSLENYYQQSKELSEKEVIDIDIEYEGEESTD 257
+ + R D AL S ++++E DN+ L +Q K+ +K ++D D+ + +E+ D
Sbjct: 181 KAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVENVEQLKQELQKTLLD-DVPSKVQENVD 239
>sp|Q0TWF4|AT221_PHANO Autophagy-related protein 22-1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=ATG22-1 PE=3 SV=2
Length = 566
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 28/182 (15%)
Query: 11 GSTAFLLTLFTIAGSLGGLFGGWMGDTLAKRLPNSGR-IILAQISFGSGIPIAAVLLLFL 69
G+ A L T GS G+ G + + KR + I+L ++ IP+ LL F+
Sbjct: 380 GTIAIALLSITSIGS--GIIGAFAWPRVQKRFSLQPKTILLCCVAGMEMIPLYG-LLGFI 436
Query: 70 PDDPSTGFMRGLVLVIMGLCISWN--PIAANKYHLTTGYSP----IFAEIVPERSRTTIY 123
P GF+ GL W P+A + G S ++A ++PE S +
Sbjct: 437 PLFKKLGFI--------GLQQPWEIYPVAVLHGIVMGGVSSYARSVYAPLIPEGSEAAFF 488
Query: 124 ALDRSFESILSSIAPPVVGLLAHHVYGYKP----------VPKEASNSAEVETDRENAAS 173
AL + S+ P +VG L H +P +P +VE RE+A +
Sbjct: 489 ALYAVTDKGSSAFGPALVGWLVDHAGSIRPAFIFLAVLVVLPAPLLWMLDVEKGREDAKA 548
Query: 174 LA 175
+A
Sbjct: 549 MA 550
>sp|A4VM84|AROC_PSEU5 Chorismate synthase OS=Pseudomonas stutzeri (strain A1501) GN=aroC
PE=3 SV=1
Length = 363
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 146 HHVYGYKPVPKEASNSAEVETDRENAASLAKALYTAIGIPMAICCFIYSFLYCTYPRERE 205
HH YG + +SA R A ++AK +GI + ++ P E
Sbjct: 112 HHKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLATLGIQ------VRGYMSQLGPIEIP 165
Query: 206 RARMDALIESEMQKLEPDNTPSLENYYQQSKELSEKEVIDIDIEYEG 252
D++ ++ +PDN P LE Y Q + + I + EG
Sbjct: 166 FKTWDSVEQNAFFSPDPDNVPELEAYMDQLRRDQDSVGAKITVVAEG 212
>sp|B2TIR2|ILVD_CLOBB Dihydroxy-acid dehydratase OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=ilvD PE=3 SV=1
Length = 552
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 176 KALYTAIGIPMAICCFIYSFLYCTYPRERERARMDALIESEMQ-------KLEPDNTPSL 228
K++ A+ MA+ C S L+ T + M+ I +++ KL P + +
Sbjct: 252 KSIMNALKADMALGCSTNSVLHITAIANEAKVNMNLDIINDLSSKTPDLCKLAPASNVHI 311
Query: 229 ENYYQQS------KELSEKEVIDID 247
EN Y ELS+K+++D+D
Sbjct: 312 ENLYAAGGITAMMNELSKKDILDLD 336
>sp|Q0C3Z2|PDXH_HYPNA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Hyphomonas
neptunium (strain ATCC 15444) GN=pdxH PE=3 SV=1
Length = 219
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 28 GLFGGWMGDTLAKRLPNSGRIILAQISFGSGIPIAAVLLLFLPDDPSTGFMRGLVLVIMG 87
GLF WM A +S + LA + G P ++LL D F L V G
Sbjct: 32 GLFQDWMAQARASEPNDSNAMSLATVD-ADGRPDVRIVLLKGVDSEGFTFFTNLESV-KG 89
Query: 88 LCISWNPIAANKYHLTT---------GYSPIFAEIVPERSRTTIYALDRSFESILSSIA 137
+ ++ NP+AA +H + G +P+ A + Y R+ +S +S+IA
Sbjct: 90 VQLAANPVAALCFHWKSQRRQVRVRGGVAPVSA------AEADAYFASRAAQSRISAIA 142
>sp|Q0GQS6|PBUE_BACAM Purine efflux pump PbuE OS=Bacillus amyloliquefaciens GN=pbuE PE=1
SV=1
Length = 386
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 19 LFTIAGSLGGLFGGWMGDTLAKRLPNSGRIILAQISFGSGIPIAAVLLLFLPDDPSTGFM 78
LF ++ GG FGGW+ D RL + I+L +SF A++L LP + +
Sbjct: 243 LFGLSAVCGGPFGGWLYD----RLGSFKSIMLVTVSF-------ALILFILPLSTVSLIV 291
Query: 79 RGLVLVIMGLCISWNPIAANKYHLTTGYSPIFAEIVPERS 118
+VI GL +SW+ A + +L +I PE S
Sbjct: 292 FLPAMVIWGL-LSWSLAPAQQSYLI--------KIAPESS 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,582,261
Number of Sequences: 539616
Number of extensions: 4279152
Number of successful extensions: 14931
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 14913
Number of HSP's gapped (non-prelim): 50
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)