BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037388
MVTACTKFEVSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLISNFLFHT
GQHFFCCKFL

High Scoring Gene Products

Symbol, full name Information P value
CGR3
AT5G65810 		protein from Arabidopsis thaliana 1.1e-07
AT3G49720 protein from Arabidopsis thaliana 1.2e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037388
        (70 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156208 - symbol:CGR3 "AT5G65810" species:3702...   125  1.1e-07   1
TAIR|locus:2097380 - symbol:AT3G49720 "AT3G49720" species...   116  1.2e-06   1


>TAIR|locus:2156208 [details] [associations]
            symbol:CGR3 "AT5G65810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
            "Golgi apparatus" evidence=ISM;IDA] [GO:0000139 "Golgi membrane"
            evidence=IDA] [GO:0010394 "homogalacturonan metabolic process"
            evidence=IMP] [GO:0045488 "pectin metabolic process" evidence=IMP]
            [GO:0005768 "endosome" evidence=IDA] [GO:0005802 "trans-Golgi
            network" evidence=IDA] EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0000139 GO:GO:0005768 GO:GO:0005802 GO:GO:0045488
            HOGENOM:HOG000029119 ProtClustDB:CLSN2689079 EMBL:BT033154
            EMBL:AK229026 IPI:IPI00521631 RefSeq:NP_569020.1 UniGene:At.7046
            STRING:Q0WPN7 PaxDb:Q0WPN7 PRIDE:Q0WPN7 EnsemblPlants:AT5G65810.1
            GeneID:836710 KEGG:ath:AT5G65810 TAIR:At5g65810 eggNOG:NOG257268
            InParanoid:Q0WPN7 OMA:ADSNCKS PhylomeDB:Q0WPN7
            Genevestigator:Q0WPN7 GO:GO:0010394 Uniprot:Q0WPN7
        Length = 258

 Score = 125 (49.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query:    10 VSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLCIKALYAWLI 53
             V P+T  VVS  LNEEET+AWG+EPYD E A++ C   L+  L+
Sbjct:    94 VGPETCSVVSSLLNEEETEAWGVEPYDVEDADSNCKSLLHKGLV 137


>TAIR|locus:2097380 [details] [associations]
            symbol:AT3G49720 "AT3G49720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
            "trans-Golgi network" evidence=IDA] GO:GO:0016021 GO:GO:0005886
            GO:GO:0005794 GO:GO:0005774 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0000139 EMBL:AL132965 GO:GO:0005768 GO:GO:0005802
            GO:GO:0009535 UniGene:At.22445 EMBL:AY087451 EMBL:AY059938
            EMBL:AY114597 IPI:IPI00546242 PIR:T46038 RefSeq:NP_001078265.1
            RefSeq:NP_566924.1 STRING:Q9M2Y6 PaxDb:Q9M2Y6 PRIDE:Q9M2Y6
            EnsemblPlants:AT3G49720.1 EnsemblPlants:AT3G49720.2 GeneID:824134
            KEGG:ath:AT3G49720 TAIR:At3g49720 eggNOG:NOG327425
            HOGENOM:HOG000029119 InParanoid:Q9M2Y6 OMA:SKNKYKP PhylomeDB:Q9M2Y6
            ProtClustDB:CLSN2689079 Genevestigator:Q9M2Y6 Uniprot:Q9M2Y6
        Length = 261

 Score = 116 (45.9 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query:    10 VSPDTYPVVSRFLNEEETKAWGLEPYDTEVAENLC 44
             V PDT  VVS  L EEET+AWG+EPYD E A++ C
Sbjct:    97 VGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHC 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.465    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        70   0.00091  102 3  11 22  0.42    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.78u 0.14s 8.92t   Elapsed:  00:00:00
  Total cpu time:  8.78u 0.14s 8.92t   Elapsed:  00:00:00
  Start:  Sat May 11 11:59:33 2013   End:  Sat May 11 11:59:33 2013

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